Spg002835.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg002835.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA-directed RNA polymerases II and V subunit 6B
Location	scaffold6: 1693564 .. 1695569 (+)
Sequence length	243
RNA-Seq Expression	Spg002835.1
Synteny	Spg002835.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAGTACTTGAAATCCAACTCCTGGGCTAGATATAAGGGTTTGCTATTTGTACTAAATATTCCATTCTTAGCTGTAGTTTCGCCACACTGGTAGTATCTTGTTTTGCTGAAAGGCCTTTATATTTTCATCTAGAACAATTGGAAGGTACAAATATGTTTCAGCTTTTTTATTAGTAAGTGGTTTTTGTTGCAGATATGAAGATGAGCCACCAGAACCAGAGATTGAGGTAAGAAATAACTAGTTTGATTCTCTTTGAAAGGAAGCAGATAACTGTTATTTTTTAAGTTGATTTATTATAGTGGAACTGTGAATGATGTACAGGAAGGTGCTGAAGAAGAATTGGATAATACTAACAATGATGATGTTCCTGGTGAACCTGTTGAAGCAGAGGAAAAGGAAGATGAAGAACCTGTTGAACGTGTGCGTAAAACCTCAAAATTTATGACCAAGTATGAACGTGCTAGAATTTTGGGTACACGGGCCCTCCAGATAAGGTTCTCTTAAATTTGTTACATCCAAATTTTTACTTGTCATCAAATTGATAAATTGCATGATGATTCTTTTTCCTTTTGGGCAGCATGAATGCTCCTGTGATGGTCGAGTTGGAGGGTGAGACTGATCCACTCGAGGTAAGATTCTTAAATGTTAAGCTAAAATCATTGAAAAGCTCCCTTTTTGTTTTCACTATCAGTAGATGTATACGTTTTTCCATGTGTGCATCCCATGGTTAGTACACCTACTCAAAAGTAAAAGGTTTAATTTAAATCATCTAAAGTGCCCCTGAACTTTGAGGTTGGGGGTTAAAATGAAACCTTTCAAACAATAGGGTATAATGGAAACCAACGTTGAAGTTTAAAGGCAATTTGTACAAAGATATTGTTTATAGTTTCAATGAATCCATGCTGAACCCCCCAAAGAAATATGTTGGATGCCATTCATGGGTTCGGCTTAGAACTGCAATAGTTCATGCTTTTTCTAGCGAATGAAGATTTATGCTTGTCAATCTTGAGTGCTTCGCATTCTTTTGGTCGAGTGTTCTGAGTTCTGACGTCTCATCTTATTCTGTACTGTTTTAGATTGCAATGAAGGAGCTTCGTGAGCGGAAGATACCCTTCACCATCCGTCGCTACCTGCCAGATGGAAGGTTTGTCTCCGGATTTTTGCCGAAACCAAATCAAATAGAACATTCTAGTTGTGGAGGGTAAGATAAAATGCTTAACAAGTGATCTCTCTCTCTCTCTCTTCATGTTGTACAGTTATGAAGACTGGGGCGTTGATGAATTGATAGTGGAGGACTCTTGGAAGAGGCAAGTTGGCGGCGCTTGATCGATCTTTGGTTAGTTGTGTGGCTGTCATCGTATGTGAGATTATGGTTTCAACTGCATAGTGATTAGGGCACGGTGTTCCCATTTAATCAGGTTGTGAACGATGAGATGGTTGTGCTCTCGACTACTATTGTTTTGTTGCATAACTATCTATTATATTTTGGAAAGGAAACTCTATTGACAAACATTTTCTACTTTTAGAAAGCATGCCGACTTGGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAGCATGCCTGACTTTCTTTCTAACTTATAAAAAACAAAACAAAAAATTTCCTTCTCACTAATTAAGAATTTGTTAAAAACTCAAAACAGAAGAAAGCACTTTTTGACACTACACTTCTCGAAGTCTCTGAAAACGAACGGTGAATAAAGGAATGCATAGATGTTTTTCAATGCCGCAGGCAATACATGTATATGGTTGGTAACTTTGGTTTTCAATAACGATTTTTGATAAAATATTCACCAGTGACTAAGAGATGAGAGCAATCACGGTTAATCAACAGTTTTTTTTTAAAACATAATTTTGTGTAAGAAATGAAAGCGAAGTAACTATGGATCTCTTTATTGGATGTAAACTATAGAAAACACCTCTGAAATGAAAGCGAAGTAGCTATAAATATTTCTATTGGATGTAACCTATTGAAAGGGGTG

mRNA sequence

ATGACCAAGTATGAACGTGCTAGAATTTTGGGTACACGGGCCCTCCAGATAAGCATGAATGCTCCTGTGATGGTCGAGTTGGAGGGTGAGACTGATCCACTCGAGATTGCAATGAAGGAGCTTCGTGAGCGGAAGATACCCTTCACCATCCGTCGCTACCTGCCAGATGGAAGTTATGAAGACTGGGGCGTTGATGAATTGATAGTGGAGGACTCTTGGAAGAGGCAAGTTGGCGGCGCTTGA

Coding sequence (CDS)

ATGACCAAGTATGAACGTGCTAGAATTTTGGGTACACGGGCCCTCCAGATAAGCATGAATGCTCCTGTGATGGTCGAGTTGGAGGGTGAGACTGATCCACTCGAGATTGCAATGAAGGAGCTTCGTGAGCGGAAGATACCCTTCACCATCCGTCGCTACCTGCCAGATGGAAGTTATGAAGACTGGGGCGTTGATGAATTGATAGTGGAGGACTCTTGGAAGAGGCAAGTTGGCGGCGCTTGA

Protein sequence

MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

Homology

[Close]

BLAST of Spg002835.1 vs. NCBI nr
Match: XP_008439178.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo])

HSP 1 Score: 165.6 bits (418), Expect = 1.7e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 60
           MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE
Sbjct: 64  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 123

Query: 61  DWGVDELIVEDSWKRQVGGA 81
           DWGVDELIVEDSWKRQVGGA
Sbjct: 124 DWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Spg002835.1 vs. NCBI nr
Match: XP_004140788.1 (DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis sativus] >KGN57349.1 hypothetical protein Csa_009934 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 1.7e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 60
           MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE
Sbjct: 64  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 123

Query: 61  DWGVDELIVEDSWKRQVGGA 81
           DWGVDELIVEDSWKRQVGGA
Sbjct: 124 DWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Spg002835.1 vs. NCBI nr
Match: KAG6574158.1 (DNA-directed RNA polymerases II, IV and V subunit 6A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 165.6 bits (418), Expect = 1.7e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 60
           MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE
Sbjct: 69  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 128

Query: 61  DWGVDELIVEDSWKRQVGGA 81
           DWGVDELIVEDSWKRQVGGA
Sbjct: 129 DWGVDELIVEDSWKRQVGGA 148

[Close]

BLAST of Spg002835.1 vs. NCBI nr
Match: XP_038878213.1 (DNA-directed RNA polymerases II, IV and V subunit 6A-like [Benincasa hispida])

HSP 1 Score: 165.6 bits (418), Expect = 1.7e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 60
           MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE
Sbjct: 63  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 122

Query: 61  DWGVDELIVEDSWKRQVGGA 81
           DWGVDELIVEDSWKRQVGGA
Sbjct: 123 DWGVDELIVEDSWKRQVGGA 142

[Close]

BLAST of Spg002835.1 vs. NCBI nr
Match: TYK22284.1 (DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo var. makuwa])

HSP 1 Score: 165.6 bits (418), Expect = 1.7e-37
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 60
           MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE
Sbjct: 69  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 128

Query: 61  DWGVDELIVEDSWKRQVGGA 81
           DWGVDELIVEDSWKRQVGGA
Sbjct: 129 DWGVDELIVEDSWKRQVGGA 148

[Close]

BLAST of Spg002835.1 vs. ExPASy Swiss-Prot
Match: Q9FJ98 (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Arabidopsis thaliana OX=3702 GN=NRPB6A PE=1 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.6e-38
Identity = 76/79 (96.20%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 60
           MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPDGS+E
Sbjct: 65  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDGSFE 124

Query: 61  DWGVDELIVEDSWKRQVGG 80
           +WGVDELIVEDSWKRQVGG
Sbjct: 125 EWGVDELIVEDSWKRQVGG 143

[Close]

BLAST of Spg002835.1 vs. ExPASy Swiss-Prot
Match: Q9SJ96 (DNA-directed RNA polymerases II and V subunit 6B OS=Arabidopsis thaliana OX=3702 GN=NRPB6B PE=1 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 6.2e-38
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 60
           MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD SYE
Sbjct: 65  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDMSYE 124

Query: 61  DWGVDELIVEDSWKRQVGG 80
           +WGVDELIVEDSWKRQVGG
Sbjct: 125 EWGVDELIVEDSWKRQVGG 143

[Close]

BLAST of Spg002835.1 vs. ExPASy Swiss-Prot
Match: P61219 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus musculus OX=10090 GN=Polr2f PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 8.9e-29
Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1   MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 60
           MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYE
Sbjct: 57  MTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYE 116

Query: 61  DWGVDELIVED 72
           DWGVDELI+ D
Sbjct: 117 DWGVDELIISD 127

[Close]

BLAST of Spg002835.1 vs. ExPASy Swiss-Prot
Match: O88828 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus OX=10116 GN=Polr2f PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 8.9e-29
Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1   MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 60
           MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYE
Sbjct: 57  MTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYE 116

Query: 61  DWGVDELIVED 72
           DWGVDELI+ D
Sbjct: 117 DWGVDELIISD 127

[Close]

BLAST of Spg002835.1 vs. ExPASy Swiss-Prot
Match: Q32PE0 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Bos taurus OX=9913 GN=POLR2F PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-28
Identity = 61/71 (85.92%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1   MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 60
           MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYE
Sbjct: 57  MTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYE 116

Query: 61  DWGVDELIVED 72
           DWGVDELI+ D
Sbjct: 117 DWGVDELIITD 127

[Close]

BLAST of Spg002835.1 vs. ExPASy TrEMBL
Match: A0A6J1J2R7 (DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita maxima OX=3661 GN=LOC111482872 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 8.4e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 60
           MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE
Sbjct: 64  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 123

Query: 61  DWGVDELIVEDSWKRQVGGA 81
           DWGVDELIVEDSWKRQVGGA
Sbjct: 124 DWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Spg002835.1 vs. ExPASy TrEMBL
Match: A0A6J1HXF2 (DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita maxima OX=3661 GN=LOC111467735 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 8.4e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 60
           MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE
Sbjct: 64  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 123

Query: 61  DWGVDELIVEDSWKRQVGGA 81
           DWGVDELIVEDSWKRQVGGA
Sbjct: 124 DWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Spg002835.1 vs. ExPASy TrEMBL
Match: A0A5D3DFB9 (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold440G00400 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 8.4e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 60
           MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE
Sbjct: 69  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 128

Query: 61  DWGVDELIVEDSWKRQVGGA 81
           DWGVDELIVEDSWKRQVGGA
Sbjct: 129 DWGVDELIVEDSWKRQVGGA 148

[Close]

BLAST of Spg002835.1 vs. ExPASy TrEMBL
Match: A0A5A7TBT6 (PX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G003780 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 8.4e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 60
           MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE
Sbjct: 839 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 898

Query: 61  DWGVDELIVEDSWKRQVGGA 81
           DWGVDELIVEDSWKRQVGGA
Sbjct: 899 DWGVDELIVEDSWKRQVGGA 918

[Close]

BLAST of Spg002835.1 vs. ExPASy TrEMBL
Match: A0A5D3E797 (DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007550 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 8.4e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 60
           MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE
Sbjct: 63  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 122

Query: 61  DWGVDELIVEDSWKRQVGGA 81
           DWGVDELIVEDSWKRQVGGA
Sbjct: 123 DWGVDELIVEDSWKRQVGGA 142

[Close]

BLAST of Spg002835.1 vs. TAIR 10
Match: AT5G51940.1 (RNA polymerase Rpb6 )

HSP 1 Score: 159.5 bits (402), Expect = 1.2e-39
Identity = 76/79 (96.20%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 60
           MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPDGS+E
Sbjct: 65  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDGSFE 124

Query: 61  DWGVDELIVEDSWKRQVGG 80
           +WGVDELIVEDSWKRQVGG
Sbjct: 125 EWGVDELIVEDSWKRQVGG 143

[Close]

BLAST of Spg002835.1 vs. TAIR 10
Match: AT2G04630.1 (RNA polymerase Rpb6 )

HSP 1 Score: 157.5 bits (397), Expect = 4.4e-39
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1   MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 60
           MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD SYE
Sbjct: 65  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDMSYE 124

Query: 61  DWGVDELIVEDSWKRQVGG 80
           +WGVDELIVEDSWKRQVGG
Sbjct: 125 EWGVDELIVEDSWKRQVGG 143

The following BLAST results are available for this feature:

BLAST of Spg002835.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439178.1	1.7e-37	100.00	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo]	[more]
XP_004140788.1	1.7e-37	100.00	DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis sativus] >KGN57349...	[more]
KAG6574158.1	1.7e-37	100.00	DNA-directed RNA polymerases II, IV and V subunit 6A, partial [Cucurbita argyros...	[more]
XP_038878213.1	1.7e-37	100.00	DNA-directed RNA polymerases II, IV and V subunit 6A-like [Benincasa hispida]	[more]
TYK22284.1	1.7e-37	100.00	DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo var. makuwa]	[more]

BLAST of Spg002835.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJ98	1.6e-38	96.20	DNA-directed RNA polymerases II, IV and V subunit 6A OS=Arabidopsis thaliana OX=...	[more]
Q9SJ96	6.2e-38	96.20	DNA-directed RNA polymerases II and V subunit 6B OS=Arabidopsis thaliana OX=3702...	[more]
P61219	8.9e-29	85.92	DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus musculus OX=10...	[more]
O88828	8.9e-29	85.92	DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus ...	[more]
Q32PE0	1.2e-28	85.92	DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Bos taurus OX=9913...	[more]

BLAST of Spg002835.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J2R7	8.4e-38	100.00	DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita maxima OX...	[more]
A0A6J1HXF2	8.4e-38	100.00	DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita maxima OX...	[more]
A0A5D3DFB9	8.4e-38	100.00	DNA-directed RNA polymerases II, IV and V subunit 6A OS=Cucumis melo var. makuwa...	[more]
A0A5A7TBT6	8.4e-38	100.00	PX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3E797	8.4e-38	100.00	DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucumis melo var. m...	[more]

BLAST of Spg002835.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51940.1	1.2e-39	96.20	RNA polymerase Rpb6	[more]
AT2G04630.1	4.4e-39	96.20	RNA polymerase Rpb6	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028363	DNA-directed RNA polymerase, subunit RPB6	PIRSF	PIRSF500154	RPB6	coord: 1..71 e-value: 4.0E-46 score: 154.3
IPR006111	Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit	PIRSF	PIRSF000778	RpoK/RPB6	coord: 1..71 e-value: 1.5E-42 score: 142.6
IPR006110	RNA polymerase, subunit omega/K/RPB6	PFAM	PF01192	RNA_pol_Rpb6	coord: 1..48 e-value: 9.2E-15 score: 54.3
IPR012293	RNA polymerase subunit, RPB6/omega	GENE3D	3.90.940.10		coord: 1..71 e-value: 7.1E-43 score: 147.6
None	No IPR available	PANTHER	PTHR10773	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2	coord: 1..79
None	No IPR available	PANTHER	PTHR10773:SF17	RNA POLYMERASE RPB6-RELATED	coord: 1..79
IPR020708	DNA-directed RNA polymerase, 14-18kDa subunit, conserved site	PROSITE	PS01111	RNA_POL_K_14KD	coord: 2..16
IPR036161	RPB6/omega subunit-like superfamily	SUPERFAMILY	63562	RPB6/omega subunit-like	coord: 1..70

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg002835	Spg002835	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg002835.1-five_prime_utr	Spg002835.1-five_prime_utr-scaffold6:1693564..1693658	five_prime_UTR
Spg002835.1-five_prime_utr	Spg002835.1-five_prime_utr-scaffold6:1693762..1693795	five_prime_UTR
Spg002835.1-five_prime_utr	Spg002835.1-five_prime_utr-scaffold6:1693891..1694010	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg002835.1-cds	Spg002835.1-cds-scaffold6:1694011..1694063	CDS
Spg002835.1-cds	Spg002835.1-cds-scaffold6:1694147..1694198	CDS
Spg002835.1-cds	Spg002835.1-cds-scaffold6:1694646..1694713	CDS
Spg002835.1-cds	Spg002835.1-cds-scaffold6:1694826..1694895	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg002835.1-three_prime_utr	Spg002835.1-three_prime_utr-scaffold6:1694896..1695569	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg002835.1	Spg002835.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0015031	protein transport
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005768	endosome
cellular_component	GO:0016020	membrane
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0035091	phosphatidylinositol binding