Spg002759.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg002759.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like
Location	scaffold6: 2105877 .. 2106842 (-)
Sequence length	288
RNA-Seq Expression	Spg002759.1
Synteny	Spg002759.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACAAGTCTAAACATGAAAAACTAGAATATTTCCAAAAAAAAAAAAAAAACGATAATTGGAAACAAGAAAATAGGCGGTAAAATTAGCCGACGGCACCTGCGTTCAGTGTCGAGCAAAATGAAGCTTTCATGGCTTCTAATGGCAGTTACTTGCATGAATTCTCGTTCGCTTCCACAAGCCCTATATTTCCTGTCTATTCAATCTAATCACCGCACTTCAGAACAGAAAACTCCAATCCTTCTTATAGAGTTCATGCTCGCAATCAAGCGTTCTAAGGCAACCCATTCGTTCTCGAAGTTCGATCGCCGTGCCACCATTGCCACTGTATCGTTTAGCCTCCCGACTCCGTAGGTTTTGTTTATTACTCTTGCTTAAGTTGCTGATTATTTTTCGAGCCTTAAAAGCTAAAAGTCTTGTCTGATTTTGCAGGAAAATCGGTTGGCACTTCCCCTCAGAAACCCCCAACGTAAGTTTACCCACAAATTTTCTCCATTCAATTAGCGTTTTTCTGCTGCAAGCATTGAGGTTAAGTGGTGTTAATTTTTTTTTTTTTGAAAAGGTTAAGTGGTGTTAATTGGATTCATTATTGCTTAACTTTATAATCCCCGAAGATATTTTTTTTTTCTAATTTAACTTATCTGTATGATATTAATGAAGGGTGATGATTAATTGGGTTGAACTACAACTTTAGTCTTGATTCCGTAAAGAGACAAGCTTATGTTGTCTAGATTATACCAGGATGTGAAAATTTTTCTTCGTATTTTGGGTTGTAGCTTATATTAATATTGACTTCTCTGAAGTCATATGTACTCCGTGGGCCAAAATATTTGTCCATAAAGAAAGTTGGAATTAGGGCACGAGATGGATCTCAGCAATAACAGGAGAATGGTTATTCATGTGGGGAGCCTGGTTGCACAAACTATGGCGGGTCTTGTTTGTGCAGGATTTGACATTGCAGGCTTGA

mRNA sequence

ATGAAGCTTTCATGGCTTCTAATGGCAGTTACTTGCATGAATTCTCGTTCGCTTCCACAAGCCCTATATTTCCTGTCTATTCAATCTAATCACCGCACTTCAGAACAGAAAACTCCAATCCTTCTTATAGAGTTCATGCTCGCAATCAAGCGTTCTAAGGCAACCCATTCGTTCTCGAAGTTCGATCGCCGTGCCACCATTGCCACTGTATCGTTTAGCCTCCCGACTCCGAAAATCGGTTGGCACTTCCCCTCAGAAACCCCCAACGATTTGACATTGCAGGCTTGA

Coding sequence (CDS)

ATGAAGCTTTCATGGCTTCTAATGGCAGTTACTTGCATGAATTCTCGTTCGCTTCCACAAGCCCTATATTTCCTGTCTATTCAATCTAATCACCGCACTTCAGAACAGAAAACTCCAATCCTTCTTATAGAGTTCATGCTCGCAATCAAGCGTTCTAAGGCAACCCATTCGTTCTCGAAGTTCGATCGCCGTGCCACCATTGCCACTGTATCGTTTAGCCTCCCGACTCCGAAAATCGGTTGGCACTTCCCCTCAGAAACCCCCAACGATTTGACATTGCAGGCTTGA

Protein sequence

MKLSWLLMAVTCMNSRSLPQALYFLSIQSNHRTSEQKTPILLIEFMLAIKRSKATHSFSKFDRRATIATVSFSLPTPKIGWHFPSETPNDLTLQA

Homology

[Close]

BLAST of Spg002759.1 vs. NCBI nr
Match: XP_022141304.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 68.6 bits (166), Expect = 3.4e-08
Identity = 45/85 (52.94%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 8  MAVTCMNSRSLPQALYFLSIQSNHRTSEQKTPIL----LIEFMLAIKRSKATHSFSKFDR 67
          MA T +NS SL Q  + L+ QSN    E KT  L    L E  LAIKRS  THS SKF R
Sbjct: 1  MAATRLNSLSLSQVPFSLATQSNCYNLEHKTLFLPVSPLFELKLAIKRSNVTHSVSKFTR 60

Query: 68 RATIATVSFSLPTPKIGWHFPSETP 89
          RAT ATVSFSLP  K     P + P
Sbjct: 61 RATTATVSFSLPATKPEGVSPDKLP 85

[Close]

BLAST of Spg002759.1 vs. NCBI nr
Match: XP_023552673.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.8 bits (164), Expect = 5.8e-08
Identity = 46/85 (54.12%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 8  MAVTCMNSRSLPQALYFLSIQSNHRTSEQKTPIL----LIEFMLAIKRSKATHSFSKFDR 67
          MA T MNS SL    + L  QSN  + E KT  L    LI+  LAIKRS ATHS SKF R
Sbjct: 1  MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR 60

Query: 68 RATIATVSFSLPTPKIGWHFPSETP 89
          RAT ATVSFSLP  K     P + P
Sbjct: 61 RATTATVSFSLPASKPEGVSPDKLP 85

[Close]

BLAST of Spg002759.1 vs. NCBI nr
Match: KAG6576777.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014811.1 ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.8 bits (164), Expect = 5.8e-08
Identity = 46/85 (54.12%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 8  MAVTCMNSRSLPQALYFLSIQSNHRTSEQKTPIL----LIEFMLAIKRSKATHSFSKFDR 67
          MA T MNS SL    + L  QSN  + E KT  L    LI+  LAIKRS ATHS SKF R
Sbjct: 1  MAATRMNSLSLSLVPFSLPAQSNCYSLEPKTLFLPASPLIQLNLAIKRSNATHSVSKFTR 60

Query: 68 RATIATVSFSLPTPKIGWHFPSETP 89
          RAT ATVSFSLP  K     P + P
Sbjct: 61 RATTATVSFSLPASKPEGVSPDKLP 85

[Close]

BLAST of Spg002759.1 vs. NCBI nr
Match: XP_022968478.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-07
Identity = 45/85 (52.94%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 8  MAVTCMNSRSLPQALYFLSIQSNHRTSEQKTPIL----LIEFMLAIKRSKATHSFSKFDR 67
          MA T MNS SL    + L IQS   + EQKT  L    L E  LAIKRS ATH   KF R
Sbjct: 1  MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60

Query: 68 RATIATVSFSLPTPKIGWHFPSETP 89
          RAT ATVSFSLP  K     P + P
Sbjct: 61 RATTATVSFSLPASKPEGISPDKLP 85

[Close]

BLAST of Spg002759.1 vs. NCBI nr
Match: XP_022945169.1 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-07
Identity = 45/85 (52.94%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 8  MAVTCMNSRSLPQALYFLSIQSNHRTSEQKTPIL----LIEFMLAIKRSKATHSFSKFDR 67
          MA T MNS SL    + L IQS   + EQKT  L    L E  LAIKRS ATH   KF R
Sbjct: 1  MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60

Query: 68 RATIATVSFSLPTPKIGWHFPSETP 89
          RAT ATVSFSLP  K     P + P
Sbjct: 61 RATTATVSFSLPASKPEGISPDKLP 85

[Close]

BLAST of Spg002759.1 vs. ExPASy TrEMBL
Match: A0A6J1CI79 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111011733 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.7e-08
Identity = 45/85 (52.94%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 8  MAVTCMNSRSLPQALYFLSIQSNHRTSEQKTPIL----LIEFMLAIKRSKATHSFSKFDR 67
          MA T +NS SL Q  + L+ QSN    E KT  L    L E  LAIKRS  THS SKF R
Sbjct: 1  MAATRLNSLSLSQVPFSLATQSNCYNLEHKTLFLPVSPLFELKLAIKRSNVTHSVSKFTR 60

Query: 68 RATIATVSFSLPTPKIGWHFPSETP 89
          RAT ATVSFSLP  K     P + P
Sbjct: 61 RATTATVSFSLPATKPEGVSPDKLP 85

[Close]

BLAST of Spg002759.1 vs. ExPASy TrEMBL
Match: A0A6J1HY47 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467707 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.3e-08
Identity = 45/85 (52.94%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 8  MAVTCMNSRSLPQALYFLSIQSNHRTSEQKTPIL----LIEFMLAIKRSKATHSFSKFDR 67
          MA T MNS SL    + L IQS   + EQKT  L    L E  LAIKRS ATH   KF R
Sbjct: 1  MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60

Query: 68 RATIATVSFSLPTPKIGWHFPSETP 89
          RAT ATVSFSLP  K     P + P
Sbjct: 61 RATTATVSFSLPASKPEGISPDKLP 85

[Close]

BLAST of Spg002759.1 vs. ExPASy TrEMBL
Match: A0A6J1G082 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111449490 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.3e-08
Identity = 45/85 (52.94%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 8  MAVTCMNSRSLPQALYFLSIQSNHRTSEQKTPIL----LIEFMLAIKRSKATHSFSKFDR 67
          MA T MNS SL    + L IQS   + EQKT  L    L E  LAIKRS ATH   KF R
Sbjct: 1  MAATPMNSLSLSHVPFSLPIQSKCHSLEQKTLFLPLSPLTELNLAIKRSTATHPVPKFSR 60

Query: 68 RATIATVSFSLPTPKIGWHFPSETP 89
          RAT ATVSFSLP  K     P + P
Sbjct: 61 RATTATVSFSLPASKPEGISPDKLP 85

[Close]

BLAST of Spg002759.1 vs. ExPASy TrEMBL
Match: A0A6J1E4F8 (ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111430678 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07
Identity = 46/85 (54.12%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 8  MAVTCMNSRSLPQALYFLSIQSNHRTSEQKTPIL----LIEFMLAIKRSKATHSFSKFDR 67
          MA T MNS SL      L  QSN  + E KT  L    LI+  LAIKRS ATHS SKF R
Sbjct: 1  MAATRMNSLSLSLVPCSLPAQSNCYSLEPKTLFLPVSPLIQLNLAIKRSNATHSVSKFTR 60

Query: 68 RATIATVSFSLPTPKIGWHFPSETP 89
          RAT ATVSFSLP  K     P + P
Sbjct: 61 RATTATVSFSLPASKPEGVSPDKLP 85

[Close]

BLAST of Spg002759.1 vs. ExPASy TrEMBL
Match: A0A5D3E3F8 (ATP-dependent Clp protease ATP-binding subunit CLPT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1044G00010 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.9e-07
Identity = 45/86 (52.33%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 8  MAVTCMNSRSLPQALYFLSIQSNHRTSEQKTPIL-----LIEFMLAIKRSKATHSFSKFD 67
          MA T +NS S  Q    L  QSN  + E K P+L     LIE  LAIKRS ATH  SKF 
Sbjct: 1  MAATRLNSLSFSQLPLSLPSQSNCYSLEHK-PLLFPLTPLIELKLAIKRSNATHPVSKFT 60

Query: 68 RRATIATVSFSLPTPKIGWHFPSETP 89
          RRAT ATVSFSLP  K     P + P
Sbjct: 61 RRATAATVSFSLPASKPEGVSPEKLP 85

The following BLAST results are available for this feature:

BLAST of Spg002759.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141304.1	3.4e-08	52.94	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Momord...	[more]
XP_023552673.1	5.8e-08	54.12	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurb...	[more]
KAG6576777.1	5.8e-08	54.12	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic, partial [Cu...	[more]
XP_022968478.1	1.3e-07	52.94	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurb...	[more]
XP_022945169.1	1.3e-07	52.94	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like [Cucurb...	[more]

BLAST of Spg002759.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg002759.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CI79	1.7e-08	52.94	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Momo...	[more]
A0A6J1HY47	6.3e-08	52.94	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu...	[more]
A0A6J1G082	6.3e-08	52.94	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu...	[more]
A0A6J1E4F8	1.1e-07	54.12	ATP-dependent Clp protease ATP-binding subunit CLPT1, chloroplastic-like OS=Cucu...	[more]
A0A5D3E3F8	6.9e-07	52.33	ATP-dependent Clp protease ATP-binding subunit CLPT1 OS=Cucumis melo var. makuwa...	[more]

BLAST of Spg002759.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg002759	Spg002759	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg002759.1-cds	Spg002759.1-cds-scaffold6:2105877..2105897	CDS
Spg002759.1-cds	Spg002759.1-cds-scaffold6:2106375..2106411	CDS
Spg002759.1-cds	Spg002759.1-cds-scaffold6:2106494..2106723	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg002759.1-five_prime_utr	Spg002759.1-five_prime_utr-scaffold6:2106724..2106842	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg002759.1	Spg002759.1-protein	polypeptide