Spg002098.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg002098.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	scaffold2: 25394891 .. 25409983 (+)
Sequence length	1194
RNA-Seq Expression	Spg002098.1
Synteny	Spg002098.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTTCATCGATGGCTCTGTTTTCCCCATCTCTGGTCGCCCAAGCCGTGAAATTGTCCCTCGCCGCCTCTTACCTCTTCGGCGACAGCCGTGTCACCATGAGGAAAACTGCCGGCAAGCCCAAGCCCGTCTCCTCCGGAAGCCCATGGTACGACCCAGATTGCGTCAAGTACTTGGGCCCATTCTTCAGCGAGCCCCCGTCCTATCTGACCGGCGAGTTCCCCGGCGACTACGACTGGGACACCATCGGCCTCTCCGCCGACCCCGAGACCTTCGCCAAGAACCGCGAGCTCGAAGTGATCCAATCGAGATGGGCCATGCTCGGGGCTCTTGGCCACGTGTTCCCTGAGCTCCCTCTCGCAACGACGTCAAATTCGACGACGCCGTGTGGTTCAAAGCCGGCTCGCAGATCTTCAGCGAAGGTGGGCTCGACTATTTGGGCAACCCGAGCCTGGTCCACGCTCCAGACCTCGTCGGAACGGGGAGGAGGTCCAACATTTAAAAAAAAAGAGAGAGAGAAAGAGAAGTTGAGGTGAGAAAGAAGAAGAGGAGAGAAAAGGAGAGAAGAAAAAAAAAATCTGGCGGTCGGCGCCGTCAGCTGGCGACGGCCGGCCACCAGAGTTGAAGAAGATGATATGGAAGAAGAAGGAAGAAGGTGGTTGGGAAGAGAAAGAAGAAGGAGAAGAGAGAGGGAGAGAAAGAATTAATAAAATAATTAAAAAATAATATATATTTTTTTTTATTATTTTAATATATTTTTAATTAAAAATTTAAAAATTAATTTTTTAATTAAAATAATAGTGCCACGTCAGCAGCCGGTTAGATTTAACGACAAAATGGATGGCAGGGACCAAATTGCTACTTATCTAAAACCTTAGGGACTAAATTGTTGAATTTGAAACCTCAAGGACCAAAATGGAACCTAACTCAAACCTCAGGGACTAAAAGTGTATTTTTCCCTTATGTATTTTATAAGTAAGAAATGAAAAAAGAATAATGATGTTATTTATAATTTAAAGTTTTTTTTTTCAAAAGCACAATACTAAATATTTCTTATTCTCATTTTTAATAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATCAAATATATTTTTCCTGTTTCTAGGCAAAAAAAGAAAAAAAAAATGGAAAAGAAATGGAAGGAGGGAGGCGGTGGGACAACAGCGACAGAGGTCGCGATGTCGAAGTCTTATTTAGGAAAGGAAAGCAGCCGTTATAGTTTACGTGACGACAATGCCAGTAGAAGAATAAAAGAGCCGTTGGTGATCCCCGGCGCGGCAGATTGCTTCCTTAATTACAACGGTCTGATTATCAGAAATTTTCCTTAATTGAAACCCAGCCGTTCCCCTTCCCTATAAATGAGACACCGCTCCCGCCTCCCCCCGTGCAAAATCAAAACTCTATTTTTGGTTTTGATCAGAGACAGAGACAAAGACAACCACCATGTCTTTCTTCTCCACGAATTCCTACCTCCAATACTCTATCCGCCCCACTGGAAACAGCAGCGACGATCAAATTCTGAAACTCCGATTAGGGCATTGTAGCCGCCTGATTTCTGGATTTCCACACCAAATCCTGCAACAAACTCCGTCGACTCTGATGGAGGAGGCTCTATTTCCTCTCTGTTTCCACACCAATCCAATATTTTCTCCCATTGGTTTATTTTTTGCTCATTCCTAAACAATCCCTGAGGATGCTATGCTGCATTGAGAGTTGGGACTTTCAATTTTTTGTGTGTGTTTTGGAGCATTGTACAGTATTGAGAGTTGAGAATTTCTATTTTTTTTTGTGTGTGTGTGTTTTGGAGCATTGGCAAGACAAGTGCATAATATTTTCTCCCCTTTATTCATTGGTTTATTTTTTGCTCATTCCTAAACCATCACTTGAGGATGTTGTGCTACATTAAGAGTTGGGACTTTCAATTTTTTGTGTGTTTTGGAGCATTTTATTTTCAATGTCCATTAATTATGTATATGTTATACTTTCCAAGAATTTCTTGCTTTGTTTTTTTTTTAAAAAAAATAGTTGAAATAGATGATGGAAGAAACGCAGAAGCTTCAAATTCTATATGTTTATTATTTTCTTTTTTAAGATCGATTTTTATATGTTTATTACACTTTTAATTTTTGCCTTATAAATACAAAAATTTCGGTTCTCAAACCTCCACAGATCACAACCAACTTGCTTTGCTTGGTTATGGAAAGAAACTAAGATGGAGAAGCTCTCATTTCATGAATATGTTACATTGAACAGACAATTAATTGAATTGAATTAAATAATTAGGTGGAGGAGGTTGGTGAACTCAAAACTTCTAATATTTAGATGTTTTATTTGAAGATGATTTGAATTTGTAGACATTTAATTTGCGTAATGCTCTAGATTCAATGGCAAGCTTTATTTCATACAGAGAGGGTTTCTTTAATTCCAAATGAACACATTCCAAAAGAAAAATAGCCTTCGACATTGAACAACCTAATGGTGAAGAGAAACTTTTCTTGATTGATTGGTATCATACCTCTACTGATGTTTTTGAGGGTGTGGAAACAGGTGAAGTGTCAGATGATAGTGATGAGAGACCAACTTCACCTAATCCATAATTGGATGTTACTTCACCTTGTTTTCATTCACCTAGTGTTTATTAATCATTTGTGTTTGCAGGAGGTTGAAACTGGAGTTGCTATTGAGGGAATGACACTTGAAGGTGAGAGATAGAACAATGAAGGTGAAAGATAAAAGGAAGAGGAAAATATTGGAAGCCAACAATCTACAAATCAACTATAGTCTTAAGGAAACTTTTATTTTTCTATAGTTTTAGATCTAGGACAAATATGCAGATTTTTTTGTGCATATGACAACTTTTTGCAAACTCTGCAATTTTGTATAGTAATTTGATGAAGAAGCTCTCTTTTTGGAAACTCTTTTTTGTATAATAATTTGATGGTGTTCAACCTATATGAAGAAGCTTACTTTATTAGTTTAATTGTGATATTTCGTTGGAAATGATGAATATTGAAATGACAGGTTATTGAATCCATGTTTCTTGATTGAATTTTATGCTCACCATTCTAATATTTTTGTTCACATAACAAGCCAATTTCTATTCCAGAAAGCTTCAATCATCAAGTAGTGGGTATTTATAATGTAAGCATTCCTTTGAACTTGTTTGCCCAATTCTTTTTCTACGTTGACTTCGTGGGGCTTCTGATATAGGAACATCAAATTGTTCTACTGTGTTAGCCAATCTTGAAAAATATTATAACTAACAATATGGGTTGTATGATGAATGGTAGGCTAGCTTTGCTCTTGATGATTGTTATTCTATTTAATTCTTAGATTTACATACATTTTTCTTGACCTCAAATGTTTAATTCTTGATGATTGAATGAGAGAAAATCAAATTTCCTTTGTAATCCATAACTACAACATGATAAAAAATCTTCAACTAAAATTTATTTCGATATTTGATGTCTATGGCTCTACACCTCTCATACTACATCTTTCTTCCCATTCAATTACAGTTCAAATGACCTAACCTCTTTAGATTGCTTAATGAGAATCCTTTTACCTAGCAACAAACACAAACACATAAATAAAAGGTAAAAATAAAATTTGATGGAGCATTTTGAAAGTTGAAACATGGACTCCACAACTTGTCTTTCAATATTCTAAACATAGGCAAAGAATCTGTAACGTCGGCAACTTAAGGTAAATCTCAATTCCTTTAGTTTTGGGTTAATTTGAGTTAATTTCATGGAATTAGTATAAGGAGGTGTTAGGTTTTATGTCCTAAAACTCGTAGATAGTGAATGATTAACGAATTATACACTTGTATCAATAAAGTGTTATTGAGGTTTATGCAATAAAGTGTTATTGTCATATTAAGTCTAGAATTGCACAATATGACCCAAATCCAATAAACTAAGATCCAAGGTTGTTTACATGTAACTTGAACTAGTATGTGGGGACATACGGGGATTGGTGTTCAAATAACAACCTAAAAGGTCAATAGTACAGGGATAAGGCTGGGTACCTTATCCTGGTAACACTATGTGGTACGACCCGCATTGTATTCGATACAGACATATTGATCCAAGGCGTCCATGTAGGAGACATGCGAGCGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCACGAAATAGTAAACCACTAGATGTAACACCGTTAACTAGTTAGGTTACTGTTTCAATAGGATGACCTAGGTAACTCAATCTCAATCCTGAGTCTGTTATGAACTTCTTTCAGGAGGAATTTTCCTTAGATTTGTATGGGTGAGAGTGGCCTGCTCGCCGACTCAATAATCCTACCATTTCAGGGGCAAGACCGAATAGGGGCTGGGAACATAACAGTACAAGATGGAATTCACTCCTTCCCCTATTGGGGCAAGTAGATGTGTGTTCCCTTAAGGGCTGATTCCGGGGCTTGAACAAAAGCGCGCTGTCCTTTCCTGGCCCGAGAGGAATTTCTGTTTAGTGGTTGGACCCTAAATAGGTTGTTCATTAGAGGGATCAGTGGTACTTAAGGATCCAGAGGTAACCCAGGGGTAAAACGGTAATTTGACCCAGCTGGTGTTACGAACACACGTGAAGGATTGACTTACTGCATTGGTCGATATCCGTGGACACAGAAATATTCTATAGTGAGAAGAGAGCAGCTGTGGGTCTTTAGTGGAGTGACCCACAGTTAACGAATGTTGATCGACTCGGTTAATGAGTTTAGCTGATCAATCTCGTATCGTTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCACTTGCTAGCTCATAACGGATTCTGAGATAATTTAGTCTTGATATTAAAGGGAATTAATATAATATATGGAGATACATTATAGTATAAAGTTTAATTAAAAAATTAAACTTTATAATTAATTTTGGATATGATTCAAAATTAATTATTGAGAGAATAATGAATTTAATTAAATATGTGATATTTGATTAATTCATGAATTAATTAATCGGGAACTAATTAATTTAATTTAGTTTGGTTAAATGTGATTTAATCAAATTAATACTATAGTTTATATTAATGTACATTATGATGCACATTAAAACTATAGGTTAAATGAGAGAGATTAAAATTGAATATGATTCAGTTGTAATATTAATTAAATATATGATATTTGATTAATATGGGATCAATTAATTTAAATTAATTGAATGACCTATTTAATTCAATTGAATATGATTTAATTGAATTAAAACTATATGTTATAATTGATTTAATTAAAATTGGTTTAATTAAATTAATTATAATTAATTAGATAATTAATTATTAATTATTATTAGATAATAATTAAACGGTCCAGATCAATTGGATTAGATCCAATGGTTGAGATCGTGTAGGGTTTTAACTCCCTCCCCACTTATCGTGAAGTGGAGAGGGGTTACCCCACAGATCCTCCCATTCTCTCATTCACGCAAAAGTTACAGAGAAAGAAAGTTTTTCTTTTCTCTCTTCCTCTCTCAAATTCCAGCAATTCACCTTGCTGAAAATTCCCATCCAAGGCATCTAGATTGGTTCCCACAAGCCGATCTCAAGTCTCAAGAGTCATAGCGGGTGATCCAACGTGGTGGTGTTCATTGGGAGGAAGAAGAACGCGATTTGGAGCATCGTGCCGTTAGTTCTTCGAAATCCATGTAAGTGTTCTTGATCTTAAATAAATTTCCAGCAAGCTTAATCTTAGTAATTATAGAAATTGTTTCTGTATTTTTATTTGCCAATGTAACGGTTTTTCCTAAAATTGAAATAAAAAACGAGATCGTTCTTGATTGCTTCCGCTGCCAAAAGGAATTTTAATCCTTCAGGAGGGAGATTTAAAAGGATGGAATTGGGGGAATTTTAAAATTTATTAAAGCTTCGATGACAAACTTGTAAATAAGAGGTTTTGCAAGCCAAGTCAAGCCTCTTTATTTTAGGAGCTTCACGCAGCCCTAGGAAGCCATCTAAGCCTCAAGGTCTCATCTCCCTCATCTCATCTCCTTCCCTTTTCACGATTTTCTACCCTCAAGCACCATAATCAATCTTCATCTTCTTCTCCTTCGTGATAGCCATCGAACAGCCCTATCCCCCGTCACCCTTGTCGTCGACGAGCAGCTCCGACGACCACGAGAGAAGAGTAGCGGCGACGAGCGTGTTGCAGTTCGATAGCGGCGGCGGTTCACGGTTTTGGGTGCAACGACGTGTTTTTTGGTAGATTTCAGCAGCAGAGCACGACCAACCTTCGTCGGGCGTTGTTTCCGTAGTGTGCTGGTCCGTTTCAGCCTCATAAAACGCGCGGGCAGCAGAACTTCAGCAGTGGGTGCGACGGACAACAGTGGTGGGTGATAAGGGTAAAAAATATACCTATTTTACCCTTATATTTAGCTCATTTTCTTGTCAAATATTGCATGTTTAGATCAATTTTATTGTTCCCGAGCTCAAAATATGTTAGAGTTATTAAGTTAGGGTGTTGAAAATCACTTTTGTCAAATTATGCTCATTTGTGCTTAAAAAGACTCAATTTTAAGAGAATTTGACTAAGTTTGTTGTTGTGCAGAAAAACAGAGGAAATGCTGGAATTTGCCCAGAAATGCGACTGGGAAGGCAAAATGAAATGCGATAGCATTTCTGGAAAAACAGAGGCAGTTCCGAGTCTTCTGCGGGTCGTTTTGAATGAGACTTCTTCGCACCTAACCGACTGTTTTGACCCCGAAACCGACTGCGCTACCTACCAACACCTATTTCGCAGCTCCTCAACCACTTTCAGCACTATATAAGCTCGAGATTCGAAGTCAAATTCAAGTAGAACTCATTTGGAAGAAGAGGGTGGTGACAGAACCCTAGTTGATGCCTATGAGTAGGGATGCCCGAGGTCCTTCGTAGATGACTAAATTCTAACCTTAGTTAGACATCAAACCTTAGGGTTTGTAGAGATTTTCACCCATTCTCACTTGTAAAAGCGAGAGAGTTGAGTGTCTAAGCGAACTCTAGAAGAATTGGATAAAATAGAAAAACCCTAGTATCTGGCTACTGTCATTATTTCCAGCTTTTGATACTTTTCATTTATATGTATTCTTTACATCTTATTTTCAATGAAAATGTATTCATTTTCACTTTATCCCACCATGAGTAGCTAAATTCCGTTGAGGGGTTCAATATGATGAATTCCCTTATGGTTCAATAGCTTGAAAGTGTTTTATTTGCTTAAGTATTGTTCAATGCATGTCATTCTTTATTGAATATCATTCTGACCTTGCTGAGTTTAACTTGATCACTTAGACTTTGCATGCTATGTGAGTTTGATCTCGAAAGGGACAGACGATATCGGTTCTCATAAAGGTGATATAGGAGAAAAAGCTCGAAAGAGATTGTTCGGTAATTTAGGGTAAGTTGCCTAAGGCACCCTATATCAACTATAGGGTTATAGATTGCATTCGTGAATTATCTATGTCGGAGTCGAGTCACAGAAATGTGCATAACGGTGCTCGCTTAGCCTTCTAACGGTTCTTGGGAGCGAGGCCAAATAGAAGTTAAATCTGACCCAATGCATTGAATAAGCTTAGGTTGAATAATCCACGATTACGGTTATTGCCTTTGGGATGAATCCATGTTGAATACCTCGTTTTATTCATTATTGTTATTCTTTTATTTATTTGCTTGCTTTATTTATTTTTCTAAAAATCAATCATCAATCATTTCTTTGGTTACCTATTTTTAAGCAATCAGTTGAGCAGTTTTATGTTTATTATTATCTACCATCTCATCTCACATCCATCATTTAGCCTCTGCCGCACCAAGTTTTTGGTGCCGTTGTCGGGGACCAAAAGTGAAACCAGTTTTGTTTTTGAAATTGCGATCTGATTGCGTCCGCATTTTCTGTCTCTAAGGGAATTTGACTTTAATTTGCATTTGTTTTGCTTTTGCAGGTTGAAGTTAGTGCATGAATAAGGGGTGTTCACTCCTTGACATTGATCCTGAGATAGAAAGAACCTTTCATCGTCGTAGGAAAGAGCAGAGACGAAAGAAAAGGGAACAACAAGAGTTGAACACATAGGAACCTCTAGAAGAAGCTTCTTACATACAAAAGTTTCCAATGGAACCTCATAGAGTCGATCCTCAAGTTGATCCACAGAACCGTGGAAGAGAGTAAAACAGTGGAAGAATTCCTTCAGTTCCACCGGTGCCACAACAAGAAAATCCAATTTATATTGCTGAAGACCGCAATAGAGCAATAAGGGACTACGCTTTACCTATTTTTCAGACTTTAAATCCAGGAATTTTGGAGCCATCGATAGATGCTCCATAGTTTGAACTTAAACCAGTGATGTTCCAAATGTTGAATACCATGGGCCAATTCTCTGGACTTCCAAATGAAGATCCACATAAACACATCAAGCTATTTTTGAGAGTTTGCAATTCTTTTAAAGTTATAGGAGTGCCTGAAGATACTTTGAAGCTAAAGATTTTTCCATTTTCTTTGCAGGGAGATGCTGAAGCTTGGTTGGATTCATTCCCTCCAAACTCCATCACTTCTTGGAATGATTTGGCGGAGAAATTTTTAGAGAAGTTTTTTCCTTCTAATAAAAATGCCAAATATAGAGCTGAAATTATTGCTTTCAGACAATCTTACAATGAACCTCTGGATGCAGCTTGGGAAAGATTTCAAAGGCTGGTTCGGAAGTGTCCACACCACGGATTGCCTGCTTGCATCATCTTGGAGCATTTTTATAGTGAATTAGATCAAGCTTCGAAGGCAGTAGTCAATGCATCTGCAAACGGATCTTTCTTGAAGAAGTCTGCAAATGAGGCACATGCTATCTTGGACACCATAGCCACAAACAACAGACATTGGGGAGAGACTGAGCCAACAACAATCTTGAAGAATCCAGTTAAAGTAGTGGAAACAGAGGCTAATTCTACTATGCAAGCTCAAATCAAGGCTATCCACAACATGATGATGGGCATGACCATGAACAATCAAGCGAACATAGCCCCTGCCAATGCTATTTCTTCTCCCTACTGTGCAATTTGTGGTGAAGAACACATTGCTGAAAATTTTCCACTAAATCCCGCGTCTGTCTTTTATGTAGGTCAACAAGGGAATCAAAACCAGAACAGATGGAATCCTTATTCGGCCACGTACAACCCAGGTTGGAGACAGCATCCAAACTTCTCTTGGGGAGGACAAGCCGGTTCAAGTAATTCCAATACAAACCAGTTCGTGAAACCTCCTACACAATAGCAGCCGCAAAAGAACTTCCAACCAGTCCAAGTGCAGAGTCAAGAGTCAAATCTAGAGAGTCTTATGAAGGAGTACATGGCAAGAAACGATGCTGCAGTTAGAAATTTGGAAGTACAGTGTCGCAACGTCATCGCGACGCGGAGCTGCCGACGTCCTTCCCTAAGGGTCTCTTTCGAGGTGAGAGATTTGGAGTCGCCACCAATCATCTTGGGGTGTGATTGGTCACCCGTTTTAAAGAAAAACTGGTCTATGAAAACCAAAAATTAGGCTCGGGAGTCGATTGAGTGTAGGGAAGGTGTTAGCACCCCTACAACACCCGTTTAAAAACGGTTACCACATTTTACTTTAAAATTATCCTTTTATAACATGAACGGTCCTTTATTTTGAAGAGAAAAAAAAAAAAACAAATGTCCCACTTGATTTTACCTTGGCTTTAAAAATTAAAGTAAGGTTTTGATGTAGTGAGTGGGGTTATACCCAATAATTGTTTGTCATGTTGAAATCTTCTTTTAATTAAAAGAAAATTTGTCACCTCAAGAATTTGAGAAGTTATCTCAACTCTGTCATAGGTTTTACATGATATTATTTGTCCCATGTCTATTATTTCACATTTTAGGAATAAAATGTGAATTAATAATTATGAGTGGTATGACACATTTCAACAAAAAGAAATCCTTTTTTATTTTCCAAATAAAAAAAAACTAATTAGAAATTTTAAAGTTAAAAAAAAATAAATAAAGAATTTGAAATCAAATGAAAGAAAGTTAAATCATTTAGAAATTCGAACTAAAACCAAATTGAAATTCAATTGGAAATCTCAGTTTAAAAGTCATTTTGAAATTGTTTTGAGAATTCCAATTTAAAGTCAAATTGAAGTTGATTTCAAAAATTCTAAATTAAGACCAAATTCAAGTTGATTGAAAAATATTTAGGCTAATTTCCAGGCAGGGTGTTCCCTTTCGGTCAGCTTAAATACCCGTTCTTAGACAAAATTAGCCTAAAGTTTCCATAATCAACTTAAAAAAACTTTTCTTGAAATCCAATTTGAAACTTCAAATTAAATCCCATTTGAGATTCATTTAAACAATTCAAATTTAAATACCAAATTAAAATTCAATTTGAAATTCATTTGAGTATTTTCAAATTTAAATCATTTGATTCAAATATTAACCAAATTAAGATTGACTTCAAAATTTTCAATCAAAACCTATTTTGAAATTTATTTAAGAATCCCAATTTACATCCAATTGAAATCAATTTTGAAAATTAAAATCAAATCGAAATTCATTTGTGAATATCATAATTACAAATTGAACCAATTTGAGATTTTATTCAAATTAAAATCAAAGGAAAATTGAAATTTTATTCGAAAATTTCAAATCAAAACTAAATTGAAATTGGTTTCTAAAATTCCAAAATAAAATTGAATTGGAAATCCGAATTTAGAATCAAAATGGAATTTAAACTCTAAATCTCAAATTAAGATCCAATTGAAATTGATTATGAAAATCCAAATCAAAATCGAATTGAAATGGATAAGAAATCCAAATTGAAATTCCAATTAGAATCAAATTGATTGAAATTCCAATTAGAATCCAATTGATTGAAATTCCAATTACAATCCAATTGTTTGAAATTCCAATTAGAATCCAATTGATTGAAATGGATAAGAAATCTAATTTGAAAGCAAATTTGAAAATGATTTGAAAATTTCAAAATAAAAACCAATTTGAGATAAAATTGAAATATTGGGAAAACCACTTAAGACCAAATTGATTATTTCAATTTAAAACCAAGAAGACCTTTGAAATTCCAACTCATGCAAATTTGAAATAAAATTAAAATCCTAATTCTAAATAGAAATTTTAAGTTGAAATAAAAACAAAACTAAAAACCATTTTTGAAATTCATTTGGAAAATCCAAATTAAAATCAAATTGAAAGTGTTAAAGTTCCAAATTTAAAACAAATTGAAAATTTTAGTTACAACCCAATGGAAATTAATTAAGAAAATACGAATTTAAATTTAAATTAGAAATTTTAGGTTAAACCTCAATTTAAATTGAAAATCTCTTATTAAAGTCCAATTGAAATTGGCAATAAAATTCAATTTAAAACCAACTTAAAATGAGTTTGGAAACTTCCAATTCAAATCCAATTAAAACTTTTATTTGGAGACTCATTAAAGATCCAAGTAAAAACTAGATTTGGAAATCCAAATTTAAAAAAAAAAAAAAATCAACTGAATGGAATAAACTCCAAAACACAAAATAAATAAATAACTTTAAAGAAAAAAAAACAAACAAAGAATTGATAAAGAAAAGAAGAAAATGAGGAGATAAAAAAAAAATTAAAAGAAAGTGGGACCCACTACCTTTCCTCTCTTTCTCTTTTCCACCTCACCTTCTTCTTCACGATTTTCTTCCTCTGTGTTCTTCTTCTCTTCTTTTTTTCTTTTCTTCTTCCTTCCATTCACATACCTTTCTCCTTCGATTCTCACCTTTCTCCTTCGAAATCTCACCTTAGAACTCGTCAGAATCAATATGGGTCTTCGAACCGGAGCGGCGACGGCGGAACTATGCAGGCTGCGGTAGTGACGGCGACGTTCGTTGGGTAGAGGTAGTTGGAATCGTAGTGATTCAAGAAAAATCACATTGAGTTCTTATGGATCTCTCTCTAAAATCTCCTCCTTTAAAACTCTCTCATTTTTTTTTTGTGTTTTTCTCACTCATTTTCCTCCACCTTCCTTATTGTCTTCATCCTCCATAAGCTCTCCTTTTATAGGAGAGCTTGGAGAAACGGTTGAGGGAAAAGGGGAATGGGTTGAGAAAGAGGGGGAAAGAGTGGAAGGTTGGGAGAAGAAGGGGGAGAGGGAGAAGAAGGGGGAGAGGGAGAAGGAGAAGGAAGGGGGAGTGGAAGACCAAAGAAAAAAAAATTAAATAAAAACAAAAAAGAGGATAAAATAAAATGAAAATAAACAATGCAAACCAAAAAACAAATTTTTTTGATATGTGGGGAGGGGGATTCGAACCACAGAACTTGTGGTTACCAATACAGTTTTATGCCAGTTGAGCTACACTCTTGGTTGCATACCAAAAAACAAATTGACCACCACATATTGGAAAAATTCAAATATTATTACTAAAAATCAAGCCGGACCAAATACGGTGTCTACATACAGATTGGACAGATTGCTCAAGAAATTAAAAATAGACCGCAAGGGACGTTGCCCAACAAGACTAAGATCCCTCACAGAGAACGAAAGGAGCAATGCAAGGCAGTAACCTTGAGAAGTGGACTAGAGTATGATGGCCCAAAGTACCCAGTGAATCAAGAAGCAAAGATCCTAGAAGAAGCTCGAGAAAAGATTTTAGAAAAGAAATCAGAAGTTACCTCAGAAGTTATACAGAATAAAAGCCATGAAGAAAAGACCAAGGAGCATGAAGTCTTGGTAGAAAAAGAAGAAAAATCAAATTCAGAGAAAAAACAGGGGAATGCGACCGCAAAACCTAAGAAGTTTGTTATAGATCCAGAATACAGATCACCTCCTCCATACCCTCAAAGATTTAAACATGCTTCGCAGGATGCACAGTTTAAGAAGTTCTTAGATGTTTTAAAGCAGCTACATATCAATATTCCATTGGTAGAAGCACTTGAACAGATGCCTACCTATGTGAAGTTCCTGAAGGATATTCTGTCAAAGAAAAGAAGGTTGGGAGAATACGAAACGGTTGCACTCACTGAATGTTCCAGTGCACTGGTCAAGAATGAGATCCCTCCCAAACTCAAAGACCCAGGAAGTTTCACCATTCCATGCTCCATGGGAGGAAGGGATGTAGGTAGAGCTTTATGCGACCTAGGAGCGAGTATAAACCTAATGCCATACTCAGTTTTTCAACAGTTGGGGATAGGAGAAGCAAGACCAACAACTGTAACCTTACAGTTGGCGGACAGATCACTTACACAACCTATTGGAAAAATTGAAGATGTGTTAGTCAAGGTTGACAAATTTGTACCCCCAGTAGATTTCATCATTTTAGATTGTGAAGCTGATAAGGACGTGCCAATCATCTTAGGACGACCATTTTTGGCCACTGGCAGGACCTTAATTGATGTGCAGAAAGGAGAGTTGACCATGAGGGTCAATGACCAGCAAGTCACTTTCAATGTGATGAATGCCATGAAATATCCAAGAGACTTCGAGGAATGTTCTATGATTGATGAAATTGATGAACTCTCCCGGTCTACTTTTCAGGAAATGATGAAAGGAGAAACTCTGGAGGATATACTTGGAGATGAAGAACAAGACGAAAAAGGTGGGAAAAAGATTGAAGTAGAAGAAATCAATCAACCCATGAAAAGACAAAGAATCAAACCATATTGGGGAAGGGCTTTAAAGATGAAGAAGCTCATGTTTCTGTGATTGACCTGGTATGAATTCTATTCTTTGAGAATTTATTTTTGTATACTATGTGGATCTATAATGAATTAAATAAAATAATATGGATAGGATCTCAAAATATCTGGACAAGAGTAAAAACTCTGTCTAGGAAAATCCTGTAGGTGTTAATATCACATGATTGAAGAGATTGTCGAGGTCTCTTATCAAATAAATTTATAATCCTCAACCTCTAAAGCTAACTTGTAGCAGTAGCGGCCGAGGTCGATCACAGGGAGTCTATGCACACAAATCTTTAATTCCTTAATTGTTTTAGGTAACCAAAAAGGGGGGATTTTATATTTGAAAAGAAAGTAAATATCAAAGAAAACTAATTATGGAAAATAACAAAAGAGGAAAGTAAGAGAATTAAATTTAGGAAAGAAATCAATACCTTAAAGATCATGCAATCGAGTTAGTCATGGTAAGTTCAATTCAATTAAGTCATCAATTTCACTAATAAGTCAAAACAAATTTAAGCCCGGCGTATTCCGGCAACAAACCGAGAACCATGATCCAACTATCACAAACATGCAAACGCTAAGTTTGATTCTAGTTTAAACTAATTAATTGACCGATTAATTAACCTAAACCGCAATGGGATCTAGCCAAGTTAATTTACATGCTACGGGCAACAAACCACAATTACAATTAATTAAATCATTTAGTTCTAGGGACACATGCGTAAAAACATAACGTTAACCTATATGCTACTAAGATTTAGCAAGTAAATTTAGAAAGGGTGCGGTCAAGGTTGTCGATCTTTCCTACCACAATCTAAACTTATAAAAAAAAAAACTAAAATTACATAAACATGCTTTGATGATTCAAACAAGAAATTTCATTAAAAGAATATGAACTTACTCTTGACTTCTCGGTTACATGAATGAAGAACTTAGCCTCTCATAGAGCAAGAACAAGCTTTATTCTTCATGGAATACATCAAAGAAAGCAATAAAGACTAAAACTAAGAAGAATGGTGGAAAGGGGGAGAGAGATGGTCTACAAAGTTGTAGTGAATTGTGTGTTGAGGGATGATTCTAAACCTACACCAAAGGCCTCTATTTATAGAGTTTCTTGGCCTTCAATTCGTGGTAGAATGGTGCTGAATTTGGTCTTCAAACAAGGAAAATTTCAGCCAAAATTGGAAAAAATTCGATTCTGGGAACTGCCTAGCGTTGCGACGCTAGGACACAGCGTCGCAATGCTATGCCTTCAGATATGGAATGAATCTCTCGGATCAACATAGCGTCGAGACGCTATGGGTGCAGCGTCGAGACGCTGCAGCTTCTGCTTGGCGCCCACGAAATTTCCTTATTTGA

mRNA sequence

ATGGCAGCTTCATCGATGGCTCTGTTTTCCCCATCTCTGGTCGCCCAAGCCGTGAAATTGTCCCTCGCCGCCTCTTACCTCTTCGGCGACAGCCGTGTCACCATGAGGAAAACTGCCGGCAAGCCCAAGCCCGTCTCCTCCGGAAGCCCATGGTACGACCCAGATTGCGTCAAGTACTTGGGCCCATTCTTCAGCGAGCCCCCGTCCTATCTGACCGGCGAGTTCCCCGGCGACTACGACTGGGACACCATCGGCCTCTCCGCCGACCCCGAGACCTTCGCCAAGAACCGCGAGCTCGAAGTGATCCAATCGAGATGGGCCATGCTCGGGGCTCTTGGCCACGTGTTCCCTGAGCTCCCTCTCGCAACGACGTCAAATTCGACGACGCCGTGTGGTTCAAAGCCGGCTCGCAGATCTTCAGCGAAGGAGGTTGAAACTGGAGTTGCTATTGAGGGAATGACACTTGAAGGAGGAATTTTCCTTAGATTTGTATGGCGGGTGATCCAACGTGGTGGTGTTCATTGGGAGGAAGAAGAACGCGATTTGGAGCATCGTGCCGTTAGTTCTTCGAAATCCATAAAAACAGAGGAAATGCTGGAATTTGCCCAGAAATGCGACTGGGAAGGCAAAATGAAATGCGATAGCATTTCTGGAAAAACAGAGGCAGTTCCGAGTCTTCTGCGGGTCGTTGAAAGTCAAGAGTCAAATCTAGAGAGTCTTATGAAGGAGTACATGGCAAGAAACGATGCTGCAGTTAGAAATTTGGAAGTACAGTGTCGCAACGTCATCGCGACGCGGAGCTGCCGACGTCCTTCCCTAAGGGTCTCTTTCGAGAACTCGTCAGAATCAATATGGGTCTTCGAACCGGAGCGGCGACGGCGGAACTATGCAGGCTGCGGTAGTGACGGCGACGTTCGTTGGGTAGAGGAGAGCTTGGAGAAACGGTTGAGGGAAAAGGGGAATGGGTTGAGAAAGAGGGGGAAAGAGTGGAAGACAAAGAATCAAACCATATTGGGGAAGGGCTTTAAAGATGAAGAAGCTCATGTTTCTGTGATTGACCTGGACACAGCGTCGCAATGCTATGCCTTCAGATATGGAATGAATCTCTCGGATCAACATAGCGTCGAGACGCTATGGGTGCAGCGTCGAGACGCTGCAGCTTCTGCTTGGCGCCCACGAAATTTCCTTATTTGA

Coding sequence (CDS)

ATGGCAGCTTCATCGATGGCTCTGTTTTCCCCATCTCTGGTCGCCCAAGCCGTGAAATTGTCCCTCGCCGCCTCTTACCTCTTCGGCGACAGCCGTGTCACCATGAGGAAAACTGCCGGCAAGCCCAAGCCCGTCTCCTCCGGAAGCCCATGGTACGACCCAGATTGCGTCAAGTACTTGGGCCCATTCTTCAGCGAGCCCCCGTCCTATCTGACCGGCGAGTTCCCCGGCGACTACGACTGGGACACCATCGGCCTCTCCGCCGACCCCGAGACCTTCGCCAAGAACCGCGAGCTCGAAGTGATCCAATCGAGATGGGCCATGCTCGGGGCTCTTGGCCACGTGTTCCCTGAGCTCCCTCTCGCAACGACGTCAAATTCGACGACGCCGTGTGGTTCAAAGCCGGCTCGCAGATCTTCAGCGAAGGAGGTTGAAACTGGAGTTGCTATTGAGGGAATGACACTTGAAGGAGGAATTTTCCTTAGATTTGTATGGCGGGTGATCCAACGTGGTGGTGTTCATTGGGAGGAAGAAGAACGCGATTTGGAGCATCGTGCCGTTAGTTCTTCGAAATCCATAAAAACAGAGGAAATGCTGGAATTTGCCCAGAAATGCGACTGGGAAGGCAAAATGAAATGCGATAGCATTTCTGGAAAAACAGAGGCAGTTCCGAGTCTTCTGCGGGTCGTTGAAAGTCAAGAGTCAAATCTAGAGAGTCTTATGAAGGAGTACATGGCAAGAAACGATGCTGCAGTTAGAAATTTGGAAGTACAGTGTCGCAACGTCATCGCGACGCGGAGCTGCCGACGTCCTTCCCTAAGGGTCTCTTTCGAGAACTCGTCAGAATCAATATGGGTCTTCGAACCGGAGCGGCGACGGCGGAACTATGCAGGCTGCGGTAGTGACGGCGACGTTCGTTGGGTAGAGGAGAGCTTGGAGAAACGGTTGAGGGAAAAGGGGAATGGGTTGAGAAAGAGGGGGAAAGAGTGGAAGACAAAGAATCAAACCATATTGGGGAAGGGCTTTAAAGATGAAGAAGCTCATGTTTCTGTGATTGACCTGGACACAGCGTCGCAATGCTATGCCTTCAGATATGGAATGAATCTCTCGGATCAACATAGCGTCGAGACGCTATGGGTGCAGCGTCGAGACGCTGCAGCTTCTGCTTGGCGCCCACGAAATTTCCTTATTTGA

Protein sequence

MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYLGPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLGALGHVFPELPLATTSNSTTPCGSKPARRSSAKEVETGVAIEGMTLEGGIFLRFVWRVIQRGGVHWEEEERDLEHRAVSSSKSIKTEEMLEFAQKCDWEGKMKCDSISGKTEAVPSLLRVVESQESNLESLMKEYMARNDAAVRNLEVQCRNVIATRSCRRPSLRVSFENSSESIWVFEPERRRRNYAGCGSDGDVRWVEESLEKRLREKGNGLRKRGKEWKTKNQTILGKGFKDEEAHVSVIDLDTASQCYAFRYGMNLSDQHSVETLWVQRRDAAASAWRPRNFLI

Homology

[Close]

BLAST of Spg002098.1 vs. NCBI nr
Match: XP_038901990.1 (chlorophyll a-b binding protein of LHCII type 1 [Benincasa hispida])

HSP 1 Score: 203.4 bits (516), Expect = 3.7e-48
Identity = 101/119 (84.87%), Postives = 103/119 (86.55%), Query Frame = 0


Query: 1   MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYL 60
           MAASSMAL SPSL  QAVKLS  AS L GD R+TMRKTAGKPKP+SSGSPWY PD VKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPTASDLLGDGRITMRKTAGKPKPISSGSPWYGPDRVKYL 60

Query: 61  GPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLGALGHVFPEL 120
           GPF  EPPSYLTGEFPGDY WDT GLSADPETFAKNRELEVI SRWAMLGALG VFPEL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 119

[Close]

BLAST of Spg002098.1 vs. NCBI nr
Match: XP_008456347.1 (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Cucumis melo] >KAA0054604.1 chlorophyll a-b binding protein of LHCII type 1 [Cucumis melo var. makuwa] >TYK27568.1 chlorophyll a-b binding protein of LHCII type 1 [Cucumis melo var. makuwa])

HSP 1 Score: 202.2 bits (513), Expect = 8.3e-48
Identity = 101/119 (84.87%), Postives = 103/119 (86.55%), Query Frame = 0


Query: 1   MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYL 60
           MAASSMAL SPSL  QAVKLS  AS L G+ R+TMRKTAGKPKPVSSGSPWY PD VKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLGALGHVFPEL 120
           GPF  EPPSYLTGEFPGDY WDT GLSADPETFAKNRELEVI SRWAMLGALG VFPEL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 119

[Close]

BLAST of Spg002098.1 vs. NCBI nr
Match: XP_022986017.1 (chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita maxima])

HSP 1 Score: 201.4 bits (511), Expect = 1.4e-47
Identity = 100/119 (84.03%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 1   MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYL 60
           MAASSMAL SPSL  QAVKLS +AS + G+SRVTMRKT G+PKPVSSGSPWY PD VKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPSASNILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLGALGHVFPEL 120
           GPF  EPPSYLTGEFPGDY WDT GLSADPETFAKNRELEVI SRWAMLGALG VFPEL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 119

[Close]

BLAST of Spg002098.1 vs. NCBI nr
Match: KAG6570576.1 (hypothetical protein SDJN03_29491, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.1 bits (510), Expect = 1.8e-47
Identity = 100/119 (84.03%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 1   MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYL 60
           MAASSMAL SPSL  QAVKLS +AS + G+SRVTMRKT G+PKPVSSGSPWY PD VKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLGALGHVFPEL 120
           GPF  EPPSYLTGEFPGDY WDT GLSADPETFAKNRELEVI SRWAMLGALG VFPEL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 119

[Close]

BLAST of Spg002098.1 vs. NCBI nr
Match: XP_022944462.1 (chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita moschata])

HSP 1 Score: 201.1 bits (510), Expect = 1.8e-47
Identity = 100/119 (84.03%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 1   MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYL 60
           MAASSMAL SPSL  QAVKLS +AS + G+SRVTMRKT G+PKPVSSGSPWY PD VKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLGALGHVFPEL 120
           GPF  EPPSYLTGEFPGDY WDT GLSADPETFAKNRELEVI SRWAMLGALG VFPEL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 119

[Close]

BLAST of Spg002098.1 vs. ExPASy Swiss-Prot
Match: P12333 (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.3e-45
Identity = 91/119 (76.47%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 1   MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYL 60
           MA+S+MAL SPSL  +AVKL   AS + G+ R+TMRKTAGKPK V S SPWY PD VKYL
Sbjct: 1   MASSTMALSSPSLAGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYL 60

Query: 61  GPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLGALGHVFPEL 120
           GPF  E PSYLTGEFPGDY WDT GLSADPETFAKNRELEVI  RWAMLGALG VFPEL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119

[Close]

BLAST of Spg002098.1 vs. ExPASy Swiss-Prot
Match: P27495 (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB40 PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.0e-44
Identity = 91/119 (76.47%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 1   MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYL 60
           MAAS+MAL SPS   +AVKLS ++S + G+ +VTMRKTA K K VSSGSPWY PD VKYL
Sbjct: 1   MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYL 60

Query: 61  GPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLGALGHVFPEL 120
           GPF  E PSYLTGEFPGDY WDT GLSADPETFAKNRELEVI  RWAMLGALG VFPEL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119

[Close]

BLAST of Spg002098.1 vs. ExPASy Swiss-Prot
Match: P07369 (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB3C PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.9e-43
Identity = 89/119 (74.79%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 1   MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYL 60
           MA S+MAL S +   +AVKLS ++S + G+ RVTMRKTA K KP SSGSPWY PD VKYL
Sbjct: 1   MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYL 60

Query: 61  GPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLGALGHVFPEL 120
           GPF  E PSYLTGEFPGDY WDT GLSADPETFAKNRELEVI  RWAMLGALG VFPEL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119

[Close]

BLAST of Spg002098.1 vs. ExPASy Swiss-Prot
Match: P12469 (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 GN=CABC PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.7e-43
Identity = 89/119 (74.79%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 1   MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYL 60
           MAAS+MAL S S   +AVKLS ++S + G+ +VTMRKTA K KPVSS SPWY P+ VKYL
Sbjct: 1   MAASTMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYL 60

Query: 61  GPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLGALGHVFPEL 120
           GPF  E PSYLTGEFPGDY WDT GLSADPETFAKNRELEVI  RWAMLGALG VFPEL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119

[Close]

BLAST of Spg002098.1 vs. ExPASy Swiss-Prot
Match: P27496 (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB50 PE=2 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.9e-43
Identity = 88/119 (73.95%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 1   MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYL 60
           MAA++MAL S S   +AVKLS ++S + G+ +VTMRKT  K KP+SSGSPWY PD VKYL
Sbjct: 1   MAAATMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYL 60

Query: 61  GPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLGALGHVFPEL 120
           GPF  E PSYLTGEFPGDY WDT GLSADPETFAKNRELEVI  RWAMLGALG VFPEL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 119

[Close]

BLAST of Spg002098.1 vs. ExPASy TrEMBL
Match: A0A5D3DVR3 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00410 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.0e-48
Identity = 101/119 (84.87%), Postives = 103/119 (86.55%), Query Frame = 0


Query: 1   MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYL 60
           MAASSMAL SPSL  QAVKLS  AS L G+ R+TMRKTAGKPKPVSSGSPWY PD VKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLGALGHVFPEL 120
           GPF  EPPSYLTGEFPGDY WDT GLSADPETFAKNRELEVI SRWAMLGALG VFPEL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 119

[Close]

BLAST of Spg002098.1 vs. ExPASy TrEMBL
Match: A0A1S3C301 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496313 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.0e-48
Identity = 101/119 (84.87%), Postives = 103/119 (86.55%), Query Frame = 0


Query: 1   MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYL 60
           MAASSMAL SPSL  QAVKLS  AS L G+ R+TMRKTAGKPKPVSSGSPWY PD VKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLGALGHVFPEL 120
           GPF  EPPSYLTGEFPGDY WDT GLSADPETFAKNRELEVI SRWAMLGALG VFPEL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 119

[Close]

BLAST of Spg002098.1 vs. ExPASy TrEMBL
Match: A0A6J1J6F4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111483879 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 6.8e-48
Identity = 100/119 (84.03%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 1   MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYL 60
           MAASSMAL SPSL  QAVKLS +AS + G+SRVTMRKT G+PKPVSSGSPWY PD VKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPSASNILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLGALGHVFPEL 120
           GPF  EPPSYLTGEFPGDY WDT GLSADPETFAKNRELEVI SRWAMLGALG VFPEL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 119

[Close]

BLAST of Spg002098.1 vs. ExPASy TrEMBL
Match: A0A6J1FVQ6 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448911 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 8.9e-48
Identity = 100/119 (84.03%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 1   MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYL 60
           MAASSMAL SPSL  QAVKLS +AS + G+SRVTMRKT G+PKPVSSGSPWY PD VKYL
Sbjct: 1   MAASSMALSSPSLAGQAVKLSPSASDILGESRVTMRKTGGRPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLGALGHVFPEL 120
           GPF  EPPSYLTGEFPGDY WDT GLSADPETFAKNRELEVI SRWAMLGALG VFPEL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 119

[Close]

BLAST of Spg002098.1 vs. ExPASy TrEMBL
Match: A0A0A0KGD7 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_6G139750 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-47
Identity = 100/119 (84.03%), Postives = 102/119 (85.71%), Query Frame = 0


Query: 1   MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYL 60
           MAASSMAL SPS   QAVKLS  AS L G+ R+TMRKTAGKPKPVSSGSPWY PD VKYL
Sbjct: 1   MAASSMALSSPSFAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLGALGHVFPEL 120
           GPF  EPPSYLTGEFPGDY WDT GLSADPETFAKNRELEVI SRWAMLGALG VFPEL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 119

[Close]

BLAST of Spg002098.1 vs. TAIR 10
Match: AT1G29930.1 (chlorophyll A/B binding protein 1 )

HSP 1 Score: 174.5 bits (441), Expect = 1.7e-43
Identity = 90/119 (75.63%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 1   MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYL 60
           MAAS+MAL SP+   +AVKLS AAS + G  RVTMRKT  KPK   SGSPWY  D VKYL
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKG-PSGSPWYGSDRVKYL 60

Query: 61  GPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLGALGHVFPEL 120
           GPF  E PSYLTGEFPGDY WDT GLSADPETFA+NRELEVI SRWAMLGALG VFPEL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEL 118

[Close]

BLAST of Spg002098.1 vs. TAIR 10
Match: AT2G34430.1 (light-harvesting chlorophyll-protein complex II subunit B1 )

HSP 1 Score: 173.7 bits (439), Expect = 2.9e-43
Identity = 89/119 (74.79%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 1   MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYL 60
           MAAS+MAL SP+L  +AVKLS AAS +FG  R+TMRK +    P  SGSPWY  D VKYL
Sbjct: 1   MAASTMALSSPALTGKAVKLSPAASEVFGTGRITMRKASKPTGP--SGSPWYGSDRVKYL 60

Query: 61  GPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLGALGHVFPEL 120
           GPF  EPPSYLTGEFPGDY WDT GLSADPETFA+NRELEVI SRWAMLGALG VFPEL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEL 117

[Close]

BLAST of Spg002098.1 vs. TAIR 10
Match: AT1G29910.1 (chlorophyll A/B binding protein 3 )

HSP 1 Score: 172.6 bits (436), Expect = 6.5e-43
Identity = 89/119 (74.79%), Postives = 94/119 (78.99%), Query Frame = 0


Query: 1   MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYL 60
           MAAS+MAL SP+   +AV LS AAS + G  RVTMRKT  KPK   SGSPWY  D VKYL
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKG-PSGSPWYGSDRVKYL 60

Query: 61  GPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLGALGHVFPEL 120
           GPF  E PSYLTGEFPGDY WDT GLSADPETFA+NRELEVI SRWAMLGALG VFPEL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEL 118

[Close]

BLAST of Spg002098.1 vs. TAIR 10
Match: AT1G29920.1 (chlorophyll A/B-binding protein 2 )

HSP 1 Score: 172.6 bits (436), Expect = 6.5e-43
Identity = 89/119 (74.79%), Postives = 94/119 (78.99%), Query Frame = 0


Query: 1   MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYL 60
           MAAS+MAL SP+   +AV LS AAS + G  RVTMRKT  KPK   SGSPWY  D VKYL
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKG-PSGSPWYGSDRVKYL 60

Query: 61  GPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLGALGHVFPEL 120
           GPF  E PSYLTGEFPGDY WDT GLSADPETFA+NRELEVI SRWAMLGALG VFPEL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEL 118

[Close]

BLAST of Spg002098.1 vs. TAIR 10
Match: AT2G34420.1 (photosystem II light harvesting complex gene B1B2 )

HSP 1 Score: 168.3 bits (425), Expect = 1.2e-41
Identity = 88/119 (73.95%), Postives = 94/119 (78.99%), Query Frame = 0


Query: 1   MAASSMALFSPSLVAQAVKLSLAASYLFGDSRVTMRKTAGKPKPVSSGSPWYDPDCVKYL 60
           MA+S+MAL SP+   +AVK   AAS + G  RVTMRKT  KPK   SGSPWY  D VKYL
Sbjct: 1   MASSTMALSSPAFAGKAVK--PAASDVLGSGRVTMRKTVAKPKG-PSGSPWYGSDRVKYL 60

Query: 61  GPFFSEPPSYLTGEFPGDYDWDTIGLSADPETFAKNRELEVIQSRWAMLGALGHVFPEL 120
           GPF  EPPSYLTGEFPGDY WDT GLSADPETFA+NRELEVI SRWAMLGALG VFPEL
Sbjct: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEL 116

The following BLAST results are available for this feature:

BLAST of Spg002098.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901990.1	3.7e-48	84.87	chlorophyll a-b binding protein of LHCII type 1 [Benincasa hispida]	[more]
XP_008456347.1	8.3e-48	84.87	PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Cucumis melo] >KAA00...	[more]
XP_022986017.1	1.4e-47	84.03	chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita maxima]	[more]
KAG6570576.1	1.8e-47	84.03	hypothetical protein SDJN03_29491, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022944462.1	1.8e-47	84.03	chlorophyll a-b binding protein of LHCII type 1-like [Cucurbita moschata]	[more]

BLAST of Spg002098.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P12333	2.3e-45	76.47	Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1...	[more]
P27495	2.0e-44	76.47	Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 G...	[more]
P07369	2.9e-43	74.79	Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum OX=408...	[more]
P12469	3.7e-43	74.79	Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia OX...	[more]
P27496	4.9e-43	73.95	Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum OX=4097 G...	[more]

BLAST of Spg002098.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DVR3	4.0e-48	84.87	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3C301	4.0e-48	84.87	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1J6F4	6.8e-48	84.03	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FVQ6	8.9e-48	84.03	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A0A0KGD7	1.2e-47	84.03	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]

BLAST of Spg002098.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29930.1	1.7e-43	75.63	chlorophyll A/B binding protein 1	[more]
AT2G34430.1	2.9e-43	74.79	light-harvesting chlorophyll-protein complex II subunit B1	[more]
AT1G29910.1	6.5e-43	74.79	chlorophyll A/B binding protein 3	[more]
AT1G29920.1	6.5e-43	74.79	chlorophyll A/B-binding protein 2	[more]
AT2G34420.1	1.2e-41	73.95	photosystem II light harvesting complex gene B1B2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 58..200 e-value: 3.9E-22 score: 81.0
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 67..124 e-value: 9.0E-17 score: 62.1
None	No IPR available	PANTHER	PTHR21649:SF88	CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC	coord: 1..119
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 50..122
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..119

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg002098	Spg002098	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg002098.1-cds	Spg002098.1-cds-scaffold2:25394891..25395316	CDS
Spg002098.1-cds	Spg002098.1-cds-scaffold2:25397616..25397658	CDS
Spg002098.1-cds	Spg002098.1-cds-scaffold2:25399228..25399253	CDS
Spg002098.1-cds	Spg002098.1-cds-scaffold2:25400558..25400640	CDS
Spg002098.1-cds	Spg002098.1-cds-scaffold2:25401540..25401648	CDS
Spg002098.1-cds	Spg002098.1-cds-scaffold2:25402909..25402914	CDS
Spg002098.1-cds	Spg002098.1-cds-scaffold2:25404261..25404401	CDS
Spg002098.1-cds	Spg002098.1-cds-scaffold2:25406750..25406842	CDS
Spg002098.1-cds	Spg002098.1-cds-scaffold2:25407008..25407073	CDS
Spg002098.1-cds	Spg002098.1-cds-scaffold2:25408586..25408654	CDS
Spg002098.1-cds	Spg002098.1-cds-scaffold2:25409852..25409983	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg002098.1	Spg002098.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0016020	membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding