Spg001916.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg001916.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	heterogeneous nuclear ribonucleoprotein 1
Location	scaffold10: 2276851 .. 2287655 (-)
Sequence length	1734
RNA-Seq Expression	Spg001916.1
Synteny	Spg001916.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCAGGTAGAGGTTGAAGGTAGTGTTGGATTATCTGTTTTGATTAAGCTATGCTTTGTCTAATGTTTTAAATTCTCAAGAGAAGGTTGGTTAGTATTGCTCGGGACGCGCAATAGTTCAAGTTTGGGGGTATGATAACTCTCCAAAAGGAAGTTATTTAGACCTTATTTCTATATTGATTTGTGTGTCTTTTGTGCTAAATAGGGTTGCTTTTAGATAGATATTATATGTTTTAACCCATTTGGAAGAATGGATGCTTTGGAAGTTATTTTGTGTAGAATATATTGTTGAGCGACTTGAGAGAGCAAAATCTGTGCTGGAGCAAAGCTGGGAGCAAAACTGTCACGTCACAGTTCGTTAGCCAATTTAATGAAATGAATTATGTTAAGCTATTCTCGGGATAAAGGAGCAATGAGAGCCATCCACGTGTCTAGGTCAACCTAATTCAAGCGTTCCTCAACTCTATAAAAGGAGTTAGCCGCCCAAGTCAAATGCATTCCTTTTTGGGGAAGGAAATTCCATCCTTGGGAGGAACATTCCACTTTTGGAAGGATAATTTCTCATTTCCATTTTGGGAGCCGAATAGAGGAGAGAGATTGGAGACCAACAAGAAGACCATCAATTGCAAGCTGATCAAGGGAATTAATATTTTCTTGTATTACTTTGTAGTTATGGATGCATTTACTTATATTGTAATGTGTGTCTCTATGCACTTTATGAACTAAGTAATTTTAGGCGTTGGTTAGGGAACATGTAATTGTTGTGCTTAATATCTATGCAATAAATGTTGATTGATGCATCTTGATTATTTGTTTTGCTCATTTATATTTTGTGTCCGCCTGGCCAGCCGGTATGAATACCATTCTCTAATTTCAGGGATGATTTAGGGAGTGTGACATTTAATCACACTAGATCATTGTGTATTGGTGAACGCCAGTGACTGAGCTAGGGATAGCCAGTTGCCTAGTGCTTGATCGGTAGTACGTCATTGGAGTTGAAACATATTCTAAAAAATCCGGAGTTCTGGGAGGAATCCGCTAATAAGACTGCGAGAGTTTTGCATGATCAATAATATTGCTAGAGCATCTTTTAAAACAATTACTAAATCCTGACCAGCGTCTGTTTCTAATCTGTCTGCTTATTTGTTTACTTTCTGTTCTGTCATTTCTTTTGCTTCAGCATTATATCAAAACCAATCATTTTAACCGTTCTTGAAACCATTAATGAGTTGCACAAAATAGATAAAGTGAAAGCTAATTCAGACCCTGGATTCGATAAATACTTATTACTTGCTGCGGATTGTGTATACTTGCACAGAGTTCTAGAGTCTATTTCTTACTACATTTTTACTCACTTCGGAAACCCAACATCCCACAACTACGTTCCTAATCTCAGAGTCATAGGGGGAAGATCAATTGGTGGTGTCCCAACTGTTGACCCTTGGTCCCTATGAAATCAAGAAAGGCGTTCTTGATATTTCAGAGACGACAACGACGATATGTTTGCTTCTCCCCTTTAGAATTAGTTCTAAGGTTGTATGCTTAGCCTTAATAATATAAATCTAGAATAGTTCTAAGTTTTTTTGCCAATGTATTGGTATTTTGGTAGAAACAAAATTAACTACGAATCGGTCCCAATTACGCTTCCGCTTTATCGGAATTGGGGAATTCCAAATCCTTCAAGTTTCACGTTCATACCCAAGTCACTATCTAATTTAATTCAAAAAAAGTAAATAAATAAAACAATTTATCTCATGAATCAAGGAATTACACAATATCTATCTTTTCTCTCTTATCTTTCAAAATTCAAATTCAAATTTTATCTTTAAAAAAAACTGAAATATTACATAGAAATTAGTTTTTAATTTTCAATTTTTTGTTATTGTTAGTTTTTAATTTTCAATTTTTCGTTATTGTTAGTTTTTAATTATCTAATCAACATCTTCATCGTTTTTCCTAACTTTTTGTCATCCATCAATTTTTTGCTCTACCATTCTTGTCACCATTAAAAGTATTATTGATCTCTAAACATAGGTATGCTATACACTACTTAATTTACATTTATTTTCAATTCTAAATTCATTCTCTTATTTTCATTGTTGTTTTCAAAACTAGATATCTAGTCTTCTCGTTTCTATATGGTATGATGGGAGGTGGAATAATAAGAATCATTACTGTCAATAGTGCATTATAATCAGATTCTACACTCCAACTTCTCAACGATTGTATAAAAAGTAAGCTTAAAATTGAGAATAATCAAACAATTATTCGACTCTCTATGTATAACAATAGTCATGAAAAACCAGTATTTAGGCTTTCTGAGGGTATAGATGTTTCATGACATTATTTTTCATCTCCAATAGTAGGGGCGAACGATATCTGGAATGCAGTAGATTATGACCACTCTGACATGGTAAATAATTCAAATACAATGTGTATGCAAAATAATCCTGACAATTTTCTCCAACTTTCATAAATAAAAAACAAAAAATTTGATTATATTGACCTCGATTCTACTCCAGTAACCATGTCCGAAAGGTTAATGAAATGTTGTATATCTATTTGTAGTAGTTTTCGATATATTGTATTTGTGTAATTCATTCCTATTTTTCCTCTTAAAATTCTTTTAGTATTATATTTCCTAATTTAAATTTTTATTATTAAATCATGCTAGTAAGATAATTTAAATTTGTTTGATTAAAGTTTATCATTAATTTAAATTGTAATTCCTACATTTCATTTTAGTTTGTTTCATGGTTATAAAATCCTATTGATTTTCATAATATCTTTGTAAACTTAAATTTTTTTTAATTAATTTTTTGTTGTTAAGATAAACTATATTTCCTAGATTTTCTCCATATATTTGAATTTAAATTTTCATTAAACTGCAAATTTTCTCTCCTTGTATTTGAATTTAATTGTTTACTATATTTATCTCCTTGTATTTGAATTTAATTGTTTACTATATTTATATTTTGATTAGGGGCATTTTCATACGATTCGTTGTTAAAAAAACCTACTATAGCAATTGACCAATTTTCAAAAGAAAAATTCAGATGATCATTTTTCATTTCATTAAAATTAGTCATTTATCTAGTTGTCCCAATAGTTTATTGTTTTTAAATCATCATTTCATTAACATGTTTTTTATTGTTAGTAAATCATCATTTTATTAACATATTTGAGTAAAAACCCATATCATTCAAAAGAAATTATTTTTATTGTAGATAGTAGAATTATACCAGTAATCAAATTGGATTTCAACAGATAAATAGCAAATCCACCTAATTAAATAAATATGTTAACAAAACAATAATGAAATGATATATTAACTTTTTATTACCAAATTTTAACAATTGGTTTGCCCAACGTAGCAAGGAAGGAGATGATAGTCTGTTTTTTTTTCAAGGCCAGGTTTGATGAAGGTTCTGTGGTTCGAAGTGTTCTTCTCCAGTATGAAGAGGCATCATGGCAAACAATTAATTTTGAAAAATCAATTATTTCATTAAGCTCGAACATGCATGGGCCAGTCCATGCCACTATACAGACCATTTTTGGGGTTCAAAGTGTCTCATGCCACCAGCATTACTTTGGGTTGCCTTCTTTTATGCCCCAAAATCGTCCGAAAACTCTTGGTTTCATTAAGGATAGGGTTCGACGTCATTTGCAGGGGTGGAAAAGGGAAGCTTTTTCTCGGTAGGAGAGAGGGAGATCTTGTTGAAAACAGTGATTCAGGCGGTTCCCTGTTACACTATGAATTGTTTTCGGCTTCCTTTGGCTTTGATTAGAGAACTTCATCAACTTATGGCTAGATTCTGGTGGAACGGAGCCTCAAAGGATAGGCGGATTCATTGGGTCAGTTGGGAGCGGATGTGCTTACCGAAATGCTTGGGAGGTTTGGGTTTTCGTAATCTGGAATCTTTTAACCTGTTTTTGTTGGCCAAGTAGGGTTGGCACCTTTTGCATAACCCGTCTTGTATCCTGCAATTTCGGTACTTCAGGAGTGGTTCTTTTCTGAATGCCACTTAGGGTGGGCGTCCTTCTTTCATCTGGCGCAGTTTGCTTCGGCAAGGTCTCCGATGGAGAATTGAGTCTGGTTCTACTATTGATATTTATGGATCTAATTGGTTACCTCGAGTATCCTCCTTTCAGGTTCGGTCTTTTCCTTCATTACCGTTGGATAGCAAGGTGAATTCTCTGTTTTCCTCTGATGGCTCTTGGGATGTGGAGCGGATTCATTCACATTTTGATCCAGATGAGGCTAGATTGATTTTGTCGTTACCTATCGGCAAAGATGGTTCCCCTGATCAGCTAATCTGACATTACGAGAAGACAGGTTGTTTCATTGTAAAGAGCGATTATGTAACGCCCCAGGCCCAGGATTCGGAATCTGGATTCGGCCCTTAACGGCCCCGGCATTCCCCTGCGACCTGGCCACGCCACCATACTTGTCTGATACTACTTCTAAGATTGAAGACTGCCCCCACAAACCAACACGGGGTCCTTTTAGCATGCTTTGTCCTCACTCACATGCTTCCTAGGAAAATTCCCAGGAGGTCACCCAACATAGAACTTCTCCAAGCTAAGCACGCATAACTTCAAAGTTCCTATGATTGAGCCACCGAAAAGGAAGGTGCACCTTGTTGGTATAGGTAGTATCTATCAATTCTTTTAAGCTTATCTTGACCATACTTTCATGTCCTCAGGACCTTCTCATTTGGAAGTGGTATCGGTTTATTCATGTACCCCTCCTAACCTCGGGCGTCACATGCCCACCAGCTTCCGCTTGGTTCGTCCCCGAACCACATCCTACTGGGAGAGGTTCTACTCTGATACCATCTGTAACGTCCCAGGCCCAGGATTCGGAATCCGGATTCGGCAGCTGACGGCCCCGGCATTCCCCTACGACCTGGCCACGTTACCATACTCGTCTTACACTGCTTCTAAGAGTGAAGACTATCCCCACAAACCAACACGGGGTCCTTTTAGCATGCTTTGTCCTCACTCACATGCTTCCTAGGAAAATTCCCAGGAGGTCACCCAACATAGAACTTCTCCAAGCCAAGCACGCTTAACTTCAAAGTTCCTATGATTGAGCCACCGAAAAGGAAGGTGCACCTTGTTGGTATAGGTAGTATCTATCAATTCTTTTAAGCTTATCTTGACCATACTTTCATGTCCTCAGGACCCTCTCATTCGGAAGTGGTATCGATTTATTCATGTACCCCTCCTAACCTCGGGCGTCACATGCCCACCAGCTTCCACTTGGTTCGTCCCCGAACCACATCCTACTGGGAGAGGTTCTGCTCTGATACCATCTGTAACGTCCCAGGCCCAGGATTCGGAATCCGGATTCGGCAGCTGACGGCCCCGGCATTCCCCTACGACCTGGCCACGTTACCATACTCGTCTTACACTGCTTCTAAGAGTGAAGACTATCCCCACAAACCAACACGGGGTCCTTTTAGCATGCTTTGTCCTCACTCACATGCTTCCTAGGAAAATTCCCAGGAAGTCACCCAACATAGAACTTCTCCAAGCCAAGCACGCTTAACTTCAAAGTTCCTATGATTGAGCCACCGAAAAGGAAGGTGCACCTTGTTGGTATAGGTAGTACCTATCAATTCTTTTAAGCTTATCTTGACCATACTTTCATGTCCTCAGGACCCTCTCATTCGGATGTGGTATCGGTTCATTCATGTACCCCTCCTAACCTCGGGCGTCACAGATTATCGTCTGGCCCAGCTTTTGGTTAGGCAATCTCTCCCGTGTTCTTCAGGCTCTTTGACACAGTCTTGGTGGAAAGGGGTCTGGAATATGAGGATCCCTAGCAAAATTAAGATATTCTTCTGGCGTCTTTACTTTGAACGATTACCTTCTGGAGTGGGTCTCTCTCAACGAGGGATTGATTGCCCAACGATCTGTTTCGGGTGTGGTCGTTCTGGTGAAGATGTTTTTCATATTTTCTGGTTTTGCAAGATTGCTCGCTCCCAGTGGAAAAGCTCTCAATTCTGGCACATTTGGTCACCCAGACCTGCTGCTAATTTTTCTCTACTTCTCATGGACTGTCAAGAGCCTTTGTGTGGTCGGATTTCGCTGTTCTTGTCGCGTTTTTGTATGGTCTCTATGGAATGCTCGAAATGGTTTGAAATTTCAAGATCTCTCTCCGTTGCATGATCTTGGTGAGTGGGCGAATAAGTACATTCATACCTTTCAGGTTGCTGACTTGTCTGTCTGTTTCAGTCGGTCCCCACCGCTCAGGCGTTCTCCGGTTCGCTGGCAGCCCCCTCCAGGCGATTATTTCAAGGTCAATGTAGATGCTGGTTTCCTCCAGGATCTTGGTGAGGTTGGTGTCGAAATTATCATTCATGATTCCTTGGGTCGGGTTCTACTGTCGATCATGTGTTTCTTGGGGTTGGTCTAGAATATTGATTTGGCTGAGGCTCATGTCGTTATAGAAGGTGTTTGTCTATCTCATCATATGGGTTTTCGACCAATTATGATCGAATCAGACTCCCAACATGTGATTAATCTTCTCTCCGATCCGTCGGATGACTTGTCTGACGTTGGCGTTCTTATCTCTCACTTTCGACGGAGTCTGTAAGATTCTCTTTGCTCTTTCTTGTTCGTGCCTCGGTCGGTAACGTGGCGACTCATCGATTTGCTTCATTAGCTCTGGCTCAACGGTCTTATCAAACTTGGATTAAGGATTGGCCTTCTAAAATTGTGGATGTTATTGTTTCTGAATGTTTAGTTCCCTTTTCAGTTTCTATTTCCATGTAATCGTGGTTTATGAATTCAAAAAAAAAAAAAAAAAAAAAAAACAAACAAACAAACGAACAACTGGTTTGCGGAAAAAAAAAAAAAAAAAAAAAAAACCTATTCCAAAAATTTTAATACACTGAGGATAATATATATAATTAGGGCTCAATTGTAAGTCTAATTCCTAATACCTAAATTTGGTATTGTGTCAATTTGACCCTTAAACTTTAAAAGTTTCAAATAGGTTTTCAAACTTTCAATTTTGTGTTCAACAAGTGATTCGACTTTCTATCTTGTATGAGTCTTGACCTATTTAACATTTTTAAAATTCACAAGTCTACTAGATCTAAAATTGAAAGTTTAGGGTCTCAATAGACATAAAATTTAAATTTATATCTAGTAGTTTGGTTAAAAAAACATGGAACATATTAGGGACCTATTAGGCACAAAATTGAAAGTTCAAGGACTTATTCGACATTTTTAAAATTTAGAGACCTATTAAAAACAAAATTGAAAGTTCAGTGACTTATTAGATACTTTTTAAAGTTCAGTGACCAAATTCACACAACACTAAGGAGGTGTTTGGCTTGACCCAAGGAGTTGGAGCTATAAAATCTGGAGTTTTTTTATTCTAGAAGTTGGAGTAGAAGTTGTTTGTGGAACCCACAACCGAGTGTTATAATTGATTAATAAGTTTGTGGGAATCACAATTAAGTGTTGTATGTTATCAGACCAAACAATAAGTTGGATGAGTTATTAACCCCACCCAACTCGTTGGACCAAATATCTCTTGAAAGTTCATGAACTAAACTTGTAATTTAACCTAAAGTTGATAGGGAGCCAATCAATTTTATAAATTTTGTCAAATTACTATTATCACATGATGACAACGGGTAGGAAAGCCGGGTTGTAGGAGATTAAAATAGGCGGGGCCGCAGCAGATAAAGAAAGAACCAAGATATTTATTGGCAAGGGTCCAATGAAATTAGGAGGTCCGTCTGGAGGTTGTGGCCAATTGCGAATTCTAGGGTTTAAGTTTGAAGGGCGCCATTTTTTCAACAACACATGTCCTCTAGGGCTTAGCCATTTCCCTCGTTCACTTGTCTTCTCCCCCCTCCTCTCTTCAAGCTCCTCTGTTCCCTTTAATGTCGGAAAACTCCATGGATTCCAAGCCGAATGATGCTGCCACTAATGGTGAACACGACGACGCCAAGCCCTTGAACCACAAAGACGACGGGAGTAGACACGACCCTCCCTCCCATGCCGACGGAGCCAGTGCTGGGTAAGATGTCCTTGCTCTCCATACTGGGTCGCCCTTTTCTTGTTTTCTTTTGGGTGTATTTTCGAGTTTCTCATGTTCTGATGTGTTCGGACGAGTTTGTTTGGTTTCATGTCTCTTGATCCGTTTTCTTGGTTGTTTGGATGCTGTTGTAGGAAAATCTTCGTTGGGGGTTTACCGCGGGAAACGACTTCCGGTTGGTTTTTTTTTTTACGGTTGTACGTTTCCTATGCAGTTGTTGTTGTTTTTGTAATGGTCGGGATTTCAATTGATTGTATGCAGCACAATTTGTTAAACATTTCGGTCAATATGGAGAAATTACGGACTCTGTTATAATGAAGGACCGCAAGACTGGACATCCCCGCGGATTCGGGTTTGTGACTTATGCTGATCACTCTGTGGTAGATAAAGTCATTGAGGACACACATATTATTAATGGGAAACAAGTAGGCCTGTACTTAGTGTTGATTTTGAGTTAGACATTAGGTTTCAAATGATTTCAAGCTCAAACTTTGACTTAACTTTTAGGTGGAAATCAAGCGAACAATACCCAAAGGTTCTTCCAGCTCTCGCGATTTCAAGACTAAGAAGATTTTTGTTGGTGGAATTCCTACATCTGTAGATGAAGGTAACTCGTAGGTTTCACTAATGCTTATTTAGATGGTACTGTGAGGTATGGCGTACTCACTTTTTAAGTGTCAAGCAGATGAGTTCAGGGATTTCTTTATGCAATATGGTGAGGTTAAGGAGCACCAGATCATGCGTGACCACTCCACTAGTCGGTCTCGTGGGTTTGGTTTTATTACATTTGAGACAGAGCAAGCAGTTGATGATCTCTTGGCAAATGGAAACAGGCTTGAGTTGGCAGGCAGTCAGGTCAGCAGAGTTCTATCTCGGCTGAACTAATCTAACATGTCCATTTTCTATCTTTGGTTGAAAATGATTTACCTACGCAGAATTTTAGTTTCTATTTACCAATGTGCTAGGTTCCAATGATGGGGTTTTTTTTTTAATGAATTGTCATTTTTTTCAATTGCGCTTGAGCAATAGATGAAAATCTTTTCTCCTCTTGCAGTTGCATGAATTTAGTATTTATTTATTTGACCAATTTCTTGGATTTGGATTATGAATTTTTATACAAATATGATACTAAAGATAGGCTTGATTGAGAAGTTCAAATTTCCATAGTCTGCCTGTCCAAGTAGTTAGTTTGTGTTATTAGTTCCACTTCGAACCTGTCATTTACTTAAGTTTTGATTTTCTTAAATAAGCTATATTTACATGAATACATTTTACTGAACTAAGGCTATGTTATGCGATTCCAAAATCTCCATGGCCACGATGTTTTTCTTACCTGGATTATTCTAGTAGTTACCCAAGGCTCAAGCATCTTCCATTGAGAAGTCTATACAGAGCATTGGATTCATTTCTTGTGAGAGTTTCTTAGCGTTCACCTGGAGTGAAGTTTGAAGAAGTTTTAAATCTTGAAATTTATGTTACAAAATGTTTTTGGAAACATTATTAAGAGAGGAAAAGTAAATTAGTAGAAAGTGAAAAATGATATTTTGTTTTTTGGGAAGCATTGCTTCATATTGTTTGATTATTTTTTTTCTAGTTTATTAACTCAAAATCATTTTAAACTTATAGGATAGGATAAAAGTGATTGGAATCAATTTTTGAAAATTTTCAAAATCAAAGTACATCCAAATAATTCTGTTGTCTCTTACAGAAAGCCATCTTTTATCGCAAGCTTATTCAAATTCAGATGCATGTAGTTCATTGCAATAAATGTTTTTTATTGGTTCCTCTATGGGGTCTTTTAATTTTATTGGTCATATGTACAAGTAAAACATAAAGAATGGAGATTTATGTACTAAATTTATTCACCTGTTGAAGTCATTCTAACAATTTAAGGTTGATGCTTTGTTTTAAAGGTGGAGATCAAGAAGGCAGAGCCGAAAAAGGCAAATCCTCCTCCAGCTCCTTCAAAGAGATACCATGATTCAAGGCCAAGTTACAGTGGTGGCTATGGGGATTCATATGGGGAGTTTGGAGGTGGCGGGTATGGTGGTGGTTTTAGGGCAGGCGGACCATACAGTGCTAGAGGTGGTAGCTATGGTGGATATGGTGGAAATGATTTTAGTGGCTATGGAATGTATGGTGCTGGTGGCATTGGAGCTTACAGGGAAGACCCCTCCATGGGATATTCTGCTCGTTATGGAGCAGGCTTCAGCAGAGGTTATGATTTTAGAGGTGGTTATGGTGGACCTGATGAGAGTTATGGTGCGTATAACAGCGGTGGTGCTCCTAATGCTGGTGGGTATGCAGGTAGCTATGACATGGGCATGGGCACTGGATACCCTGCTGGTGGTAGAGGCTCCTTCTATGGAAGTAGAGGAGCAGGAGGATATGATGGTGCGGGGAGTGCTCCAAGTGGTCGATATCATCCTTATGGACGGTAATAAGTAGCGGTGGGAGCTTTTGTTAATTGATGTGCTACAAGGACGGCAATGCTGATCAGTTCCCGGTTGTCAAAATAATGATAAATATGTGTGCCTCTTACCGTCACAAGATTCCTGCCATGTTCACCAGGATCACAATTTTCAGAGACTTAGAATTTGACTGTACAATTGATTGACTAACTTGCTGGAGATTGTGCTAAGATTATGTATCACCTATATACGCCATTAATTTCTCCATTTTGCTGTCAACATTTACGTTGTTTTAATTGACATGGCTATTTTAAAGAATGTTTAATGAATT

mRNA sequence

ATGTTTTTCATATTTTCTGGTTTTGCAAGATTGCTCGCTCCCAGTGGAAAAGCTCTCAATTCTGGCACATTTGGTCACCCAGACCTGCTGCTAATTTTTCTCTACTTCTCATGGACTGTCAAGAGCCTTTGTGTGGTCGGATTTCGCTGTTCTTGTCGCGTTTTTGTATGGTCTCTATGGAATGCTCGAAATGGTTTGAAATTTCAAGATCTCTCTCCGTTGCATGATCTTGGTGAGTGGGCGAATAAGTACATTCATACCTTTCAGGTTGCTGACTTGTCTGTCTGTTTCAGTCGGTCCCCACCGCTCAGGCGTTCTCCGGTTCGCTGGCAGCCCCCTCCAGGCGATTATTTCAAGGTCAATGTAGATGCTGGTTTCCTCCAGGATCTTGGTGAGAATATTGATTTGGCTGAGGCTCATGTCGTTATAGAAGGTGTTTGTCTATCTCATCATATGGGTTTTCGACCAATTATGATCGAATCAGACTCCCAACATGTGATTAATCTTCTCTCCGATCCGTCGGATGACTTGTCTGACGTTGGCGGCTTAGCCATTTCCCTCGTTCACTTGTCTTCTCCCCCCTCCTCTCTTCAAGCTCCTCTGTTCCCTTTAATGTCGGAAAACTCCATGGATTCCAAGCCGAATGATGCTGCCACTAATGGTGAACACGACGACGCCAAGCCCTTGAACCACAAAGACGACGGGAGTAGACACGACCCTCCCTCCCATGCCGACGGAGCCAGTGCTGGGAAAATCTTCGTTGGGGGTTTACCGCGGGAAACGACTTCCGGTTGGTTTTTTTTTTTACGGTTGTACGTTTCCTATGCAGTTGACCGCAAGACTGGACATCCCCGCGGATTCGGGTTTGTGACTTATGCTGATCACTCTGTGGTAGATAAAGTCATTGAGGACACACATATTATTAATGGGAAACAAGTGGAAATCAAGCGAACAATACCCAAAGGTTCTTCCAGCTCTCGCGATTTCAAGACTAAGAAGATTTTTGTTGGTGGAATTCCTACATCTGTAGATGAAGATGAGTTCAGGGATTTCTTTATGCAATATGGTGAGGTTAAGGAGCACCAGATCATGCGTGACCACTCCACTAGTCGGTCTCGTGGGTTTGGTTTTATTACATTTGAGACAGAGCAAGCAGTTGATGATCTCTTGGCAAATGGAAACAGGCTTGAGTTGGCAGGCAGTCAGGTGGAGATCAAGAAGGCAGAGCCGAAAAAGGCAAATCCTCCTCCAGCTCCTTCAAAGAGATACCATGATTCAAGGCCAAGTTACAGTGGTGGCTATGGGGATTCATATGGGGAGTTTGGAGGTGGCGGGTATGGTGGTGGTTTTAGGGCAGGCGGACCATACAGTGCTAGAGGTGGTAGCTATGGTGGATATGGTGGAAATGATTTTAGTGGCTATGGAATGTATGGTGCTGGTGGCATTGGAGCTTACAGGGAAGACCCCTCCATGGGATATTCTGCTCGTTATGGAGCAGGCTTCAGCAGAGGTTATGATTTTAGAGGTGGTTATGGTGGACCTGATGAGAGTTATGGTGCGTATAACAGCGGTGGTGCTCCTAATGCTGGTGGGTATGCAGGTAGCTATGACATGGGCATGGGCACTGGATACCCTGCTGGTGGTAGAGGCTCCTTCTATGGAAGTAGAGGAGCAGGAGGATATGATGGTGCGGGGAGTGCTCCAAGTGGTCGATATCATCCTTATGGACGGTAA

Coding sequence (CDS)

ATGTTTTTCATATTTTCTGGTTTTGCAAGATTGCTCGCTCCCAGTGGAAAAGCTCTCAATTCTGGCACATTTGGTCACCCAGACCTGCTGCTAATTTTTCTCTACTTCTCATGGACTGTCAAGAGCCTTTGTGTGGTCGGATTTCGCTGTTCTTGTCGCGTTTTTGTATGGTCTCTATGGAATGCTCGAAATGGTTTGAAATTTCAAGATCTCTCTCCGTTGCATGATCTTGGTGAGTGGGCGAATAAGTACATTCATACCTTTCAGGTTGCTGACTTGTCTGTCTGTTTCAGTCGGTCCCCACCGCTCAGGCGTTCTCCGGTTCGCTGGCAGCCCCCTCCAGGCGATTATTTCAAGGTCAATGTAGATGCTGGTTTCCTCCAGGATCTTGGTGAGAATATTGATTTGGCTGAGGCTCATGTCGTTATAGAAGGTGTTTGTCTATCTCATCATATGGGTTTTCGACCAATTATGATCGAATCAGACTCCCAACATGTGATTAATCTTCTCTCCGATCCGTCGGATGACTTGTCTGACGTTGGCGGCTTAGCCATTTCCCTCGTTCACTTGTCTTCTCCCCCCTCCTCTCTTCAAGCTCCTCTGTTCCCTTTAATGTCGGAAAACTCCATGGATTCCAAGCCGAATGATGCTGCCACTAATGGTGAACACGACGACGCCAAGCCCTTGAACCACAAAGACGACGGGAGTAGACACGACCCTCCCTCCCATGCCGACGGAGCCAGTGCTGGGAAAATCTTCGTTGGGGGTTTACCGCGGGAAACGACTTCCGGTTGGTTTTTTTTTTTACGGTTGTACGTTTCCTATGCAGTTGACCGCAAGACTGGACATCCCCGCGGATTCGGGTTTGTGACTTATGCTGATCACTCTGTGGTAGATAAAGTCATTGAGGACACACATATTATTAATGGGAAACAAGTGGAAATCAAGCGAACAATACCCAAAGGTTCTTCCAGCTCTCGCGATTTCAAGACTAAGAAGATTTTTGTTGGTGGAATTCCTACATCTGTAGATGAAGATGAGTTCAGGGATTTCTTTATGCAATATGGTGAGGTTAAGGAGCACCAGATCATGCGTGACCACTCCACTAGTCGGTCTCGTGGGTTTGGTTTTATTACATTTGAGACAGAGCAAGCAGTTGATGATCTCTTGGCAAATGGAAACAGGCTTGAGTTGGCAGGCAGTCAGGTGGAGATCAAGAAGGCAGAGCCGAAAAAGGCAAATCCTCCTCCAGCTCCTTCAAAGAGATACCATGATTCAAGGCCAAGTTACAGTGGTGGCTATGGGGATTCATATGGGGAGTTTGGAGGTGGCGGGTATGGTGGTGGTTTTAGGGCAGGCGGACCATACAGTGCTAGAGGTGGTAGCTATGGTGGATATGGTGGAAATGATTTTAGTGGCTATGGAATGTATGGTGCTGGTGGCATTGGAGCTTACAGGGAAGACCCCTCCATGGGATATTCTGCTCGTTATGGAGCAGGCTTCAGCAGAGGTTATGATTTTAGAGGTGGTTATGGTGGACCTGATGAGAGTTATGGTGCGTATAACAGCGGTGGTGCTCCTAATGCTGGTGGGTATGCAGGTAGCTATGACATGGGCATGGGCACTGGATACCCTGCTGGTGGTAGAGGCTCCTTCTATGGAAGTAGAGGAGCAGGAGGATATGATGGTGCGGGGAGTGCTCCAAGTGGTCGATATCATCCTTATGGACGGTAA

Protein sequence

MFFIFSGFARLLAPSGKALNSGTFGHPDLLLIFLYFSWTVKSLCVVGFRCSCRVFVWSLWNARNGLKFQDLSPLHDLGEWANKYIHTFQVADLSVCFSRSPPLRRSPVRWQPPPGDYFKVNVDAGFLQDLGENIDLAEAHVVIEGVCLSHHMGFRPIMIESDSQHVINLLSDPSDDLSDVGGLAISLVHLSSPPSSLQAPLFPLMSENSMDSKPNDAATNGEHDDAKPLNHKDDGSRHDPPSHADGASAGKIFVGGLPRETTSGWFFFLRLYVSYAVDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVEIKRTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGYGDSYGEFGGGGYGGGFRAGGPYSARGGSYGGYGGNDFSGYGMYGAGGIGAYREDPSMGYSARYGAGFSRGYDFRGGYGGPDESYGAYNSGGAPNAGGYAGSYDMGMGTGYPAGGRGSFYGSRGAGGYDGAGSAPSGRYHPYGR

Homology

[Close]

BLAST of Spg001916.1 vs. NCBI nr
Match: KAG7017783.1 (Nuclear pore complex protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 660.6 bits (1703), Expect = 1.2e-185
Identity = 356/414 (85.99%), Postives = 365/414 (88.16%), Query Frame = 0


Query: 182  GLAISLVHLSSPPSSLQAPLFPLMSENSMDSKPNDAATNGEHDDAKPLNHKDDGSRHDPP 241
            GLA SLV LS P   L +   PLMSENSMDSK NDAATNGEH+DAKPLNHKDDGSRHDPP
Sbjct: 2088 GLANSLVPLSLPSLFLFSSA-PLMSENSMDSKGNDAATNGEHEDAKPLNHKDDGSRHDPP 2147

Query: 242  SHADGASAGKIFVGGLPRETTSGWFFFLRLYVSYA--------VDRKTGHPRGFGFVTYA 301
            SH DGASAGKIFVGGLPRETTS    F++ +  Y          DRKTGHPRGFGFVTYA
Sbjct: 2148 SHGDGASAGKIFVGGLPRETTSAQ--FVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYA 2207

Query: 302  DHSVVDKVIEDTHIINGKQVEIKRTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFM 361
            D SVVDKVIEDTHIINGKQVEIKRTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFM
Sbjct: 2208 DPSVVDKVIEDTHIINGKQVEIKRTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFM 2267

Query: 362  QYGEVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKA 421
            QYGEVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKA
Sbjct: 2268 QYGEVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKA 2327

Query: 422  NPPPAPSKRYHDSRPSYSGGYGDSYGEFGGGGYGGGFRAGGPYSARGGSYGGYGGNDFSG 481
            NPPP PSKRYHDSRPSYSG YGD+YGEFGGGGYGGGFRAGGPY ARGG YGGYGGNDFSG
Sbjct: 2328 NPPPPPSKRYHDSRPSYSGTYGDAYGEFGGGGYGGGFRAGGPYGARGGGYGGYGGNDFSG 2387

Query: 482  YGMYGAGGIGAYREDPSMGYSARYGAGFSRGYDFRGGYGGPDESYGAYNSGGAPNAGGYA 541
            YGMYG GGIGAYREDPSMGY+ARYGAGFSRGYDFRGGYGGPDESYGAYNS  APN GGYA
Sbjct: 2388 YGMYGTGGIGAYREDPSMGYTARYGAGFSRGYDFRGGYGGPDESYGAYNSSAAPNTGGYA 2447

Query: 542  GSYDMGMGTGYPAGGRGSFYGSR----------GAGGYDGAGSAPSGRYHPYGR 578
            GSYDMG+GTGYP+GGRGSFYGSR          G GGYDGAGSAPSGRYHPYGR
Sbjct: 2448 GSYDMGIGTGYPSGGRGSFYGSRGGGGGGGGGGGGGGYDGAGSAPSGRYHPYGR 2498

[Close]

BLAST of Spg001916.1 vs. NCBI nr
Match: XP_023528997.1 (LOW QUALITY PROTEIN: nuclear pore complex protein GP210 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 656.8 bits (1693), Expect = 1.8e-184
Identity = 347/392 (88.52%), Postives = 354/392 (90.31%), Query Frame = 0


Query: 203  PLMSENSMDSKPNDAATNGEHDDAKPLNHKDDGSRHDPPSHADGASAGKIFVGGLPRETT 262
            PLMSENSMDSK NDAATNGEH+DAKPLNHKDDGSRHDPPSH DGASAGKIFVGGLPRETT
Sbjct: 2003 PLMSENSMDSKGNDAATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETT 2062

Query: 263  SGWFFFLRLYVSYA--------VDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVE 322
            S    F++ +  Y          DRKTGHPRGFGFVTYAD SVVDKVIEDTHIINGKQVE
Sbjct: 2063 SAQ--FVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVE 2122

Query: 323  IKRTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRG 382
            IKRTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRG
Sbjct: 2123 IKRTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRG 2182

Query: 383  FGFITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGY 442
            FGFITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPP PSKRYHDSRPSYSG Y
Sbjct: 2183 FGFITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPPPSKRYHDSRPSYSGTY 2242

Query: 443  GDSYGEFGGGGYGGGFRAGGPYSARGGSYGGYGGNDFSGYGMYGAGGIGAYREDPSMGYS 502
            GD+YGEFGGGGYGGGFRAGGPY ARGG YGGYGGNDFSGYGMYG GGIGAYREDPSMGYS
Sbjct: 2243 GDAYGEFGGGGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAYREDPSMGYS 2302

Query: 503  ARYGAGFSRGYDFRGGYGGPDESYGAYNSGGAPNAGGYAGSYDMGMGTGYPAGGRGSFYG 562
            ARYGAGFSRGYDFRGGYGGPDESYGAYNS  APN GGYAGSYDMG+GTGYP+GGRGSFYG
Sbjct: 2303 ARYGAGFSRGYDFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIGTGYPSGGRGSFYG 2362

Query: 563  SR---------GAGGYDGAGSAPSGRYHPYGR 578
            SR         G GGYDGAGSAPSGRYHPYGR
Sbjct: 2363 SRGGGGGGGGGGGGGYDGAGSAPSGRYHPYGR 2392

[Close]

BLAST of Spg001916.1 vs. NCBI nr
Match: KAG6581052.1 (Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 652.5 bits (1682), Expect = 3.4e-183
Identity = 345/391 (88.24%), Postives = 352/391 (90.03%), Query Frame = 0


Query: 205 MSENSMDSKPNDAATNGEHDDAKPLNHKDDGSRHDPPSHADGASAGKIFVGGLPRETTSG 264
           MSENSMDSK NDAATNGEH+DAKPLNHKDDGSRHDPPSH DGASAGKIFVGGLPRETTS 
Sbjct: 1   MSENSMDSKGNDAATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSA 60

Query: 265 WFFFLRLYVSYA--------VDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVEIK 324
              F++ +  Y          DRKTGHPRGFGFVTYAD SVVDKVIEDTHIINGKQVEIK
Sbjct: 61  Q--FVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIK 120

Query: 325 RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFG 384
           RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFG
Sbjct: 121 RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFG 180

Query: 385 FITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGYGD 444
           FITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPP PSKRYHDSRPSYSG YGD
Sbjct: 181 FITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPPPSKRYHDSRPSYSGTYGD 240

Query: 445 SYGEFGGGGYGGGFRAGGPYSARGGSYGGYGGNDFSGYGMYGAGGIGAYREDPSMGYSAR 504
           +YGEFGGGGYGGGFRAGGPY ARGG YGGYGGNDFSGYGMYG GGIGAYREDPSMGYSAR
Sbjct: 241 AYGEFGGGGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAYREDPSMGYSAR 300

Query: 505 YGAGFSRGYDFRGGYGGPDESYGAYNSGGAPNAGGYAGSYDMGMGTGYPAGGRGSFYGSR 564
           YGAGFSRGYDFRGGYGGPDESYGAYNS  APN GGYAGSYDMG+GTGYP+GGRGSFYGSR
Sbjct: 301 YGAGFSRGYDFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIGTGYPSGGRGSFYGSR 360

Query: 565 ----------GAGGYDGAGSAPSGRYHPYGR 578
                     G GGYDGAGSAPSGRYHPYGR
Sbjct: 361 GGGGGGGGGGGGGGYDGAGSAPSGRYHPYGR 389

[Close]

BLAST of Spg001916.1 vs. NCBI nr
Match: XP_022934343.1 (heterogeneous nuclear ribonucleoprotein 1 [Cucurbita moschata])

HSP 1 Score: 652.1 bits (1681), Expect = 4.4e-183
Identity = 345/392 (88.01%), Postives = 352/392 (89.80%), Query Frame = 0


Query: 205 MSENSMDSKPNDAATNGEHDDAKPLNHKDDGSRHDPPSHADGASAGKIFVGGLPRETTSG 264
           MSENSMDSK NDAATNGEH+DAKPLNHKDDGSRHDPPSH DGASAGKIFVGGLPRETTS 
Sbjct: 1   MSENSMDSKGNDAATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSA 60

Query: 265 WFFFLRLYVSYA--------VDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVEIK 324
              F++ +  Y          DRKTGHPRGFGFVTYAD SVVDKVIEDTHIINGKQVEIK
Sbjct: 61  Q--FVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIK 120

Query: 325 RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFG 384
           RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFG
Sbjct: 121 RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFG 180

Query: 385 FITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGYGD 444
           FITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPP PSKRYHDSRPSYSG YGD
Sbjct: 181 FITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPPPSKRYHDSRPSYSGTYGD 240

Query: 445 SYGEFGGGGYGGGFRAGGPYSARGGSYGGYGGNDFSGYGMYGAGGIGAYREDPSMGYSAR 504
           +YGEFGGGGYGGGFRAGGPY ARGG YGGYGGNDFSGYGMYG GGIGAYREDPSMGYSAR
Sbjct: 241 AYGEFGGGGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAYREDPSMGYSAR 300

Query: 505 YGAGFSRGYDFRGGYGGPDESYGAYNSGGAPNAGGYAGSYDMGMGTGYPAGGRGSFYGSR 564
           YGAGFSRGYDFRGGYGGPDESYGAYNS  APN GGYAGSYDMG+GTGYP+GGRGSFYGSR
Sbjct: 301 YGAGFSRGYDFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIGTGYPSGGRGSFYGSR 360

Query: 565 -----------GAGGYDGAGSAPSGRYHPYGR 578
                      G GGYDGAGSAPSGRYHPYGR
Sbjct: 361 GGGGGGGGGGGGGGGYDGAGSAPSGRYHPYGR 390

[Close]

BLAST of Spg001916.1 vs. NCBI nr
Match: XP_022982535.1 (heterogeneous nuclear ribonucleoprotein 1 [Cucurbita maxima])

HSP 1 Score: 651.7 bits (1680), Expect = 5.7e-183
Identity = 344/390 (88.21%), Postives = 352/390 (90.26%), Query Frame = 0


Query: 205 MSENSMDSKPNDAATNGEHDDAKPLNHKDDGSRHDPPSHADGASAGKIFVGGLPRETTSG 264
           MSENSMDSK NDAATNGEH+DAKPLNHKDDGSRHDPPSH DGASAGKIFVGGLPRETTS 
Sbjct: 1   MSENSMDSKGNDAATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSA 60

Query: 265 WFFFLRLYVSYA--------VDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVEIK 324
              F++ +  Y          DRKTGHPRGFGFVTYAD SVVDKVIEDTHIINGKQVEIK
Sbjct: 61  Q--FVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIK 120

Query: 325 RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFG 384
           RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFG
Sbjct: 121 RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFG 180

Query: 385 FITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGYGD 444
           FITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKK+NPPP PSKRYHDSRPSYSG YGD
Sbjct: 181 FITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKSNPPPPPSKRYHDSRPSYSGTYGD 240

Query: 445 SYGEFGGGGYGGGFRAGGPYSARGGSYGGYGGNDFSGYGMYGAGGIGAYREDPSMGYSAR 504
           +YGEFGGGGYGGGFRAGGPY ARGG YGGYGGNDFSGYGMYG GGIGAYREDPSMGYSAR
Sbjct: 241 AYGEFGGGGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAYREDPSMGYSAR 300

Query: 505 YGAGFSRGYDFRGGYGGPDESYGAYNSGGAPNAGGYAGSYDMGMGTGYPAGGRGSFYGSR 564
           YGAGFSRGYDFRGGYGGPDESYGAYNS  APN GGYAGSYDMG+GTGYP+GGRGSFYGSR
Sbjct: 301 YGAGFSRGYDFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIGTGYPSGGRGSFYGSR 360

Query: 565 ---------GAGGYDGAGSAPSGRYHPYGR 578
                    G GGYDGAGSAPSGRYHPYGR
Sbjct: 361 GGGGGGGGGGGGGYDGAGSAPSGRYHPYGR 388

[Close]

BLAST of Spg001916.1 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.1e-30
Identity = 140/384 (36.46%), Postives = 189/384 (49.22%), Query Frame = 0


Query: 250 GKIFVGGLPRETTSGWF---FFLRLYVSYAV---DRKTGHPRGFGFVTYADHSVVDKVIE 309
           GK+FVGG+  ET        F     VS A+   D+ TG PRGFGFV ++D SV+D+V++
Sbjct: 6   GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65

Query: 310 DTHIINGKQVEIKRTIPK--------------GSSSSRDF--KTKKIFVGGIPTSVDEDE 369
           + H I+ ++V++KR + +                SS  D   KTKKIFVGG+P ++ ++E
Sbjct: 66  EKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEE 125

Query: 370 FRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIKK 429
           FR +F  YG V +  IM D +T+R RGFGF++F++E AVD +L +    +L+G QVE+K+
Sbjct: 126 FRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVL-HKTFHDLSGKQVEVKR 185

Query: 430 AEPKKANP----------PPAPSKRYHDSRPSYSG-----------GYGDSYGEFGGGGY 489
           A PK ANP               + Y  +  SY G             G+    +G  GY
Sbjct: 186 ALPKDANPGGGGRSMGGGGSGGYQGYGGNESSYDGRMDSNRFLQHQSVGNGLPSYGSSGY 245

Query: 490 GGGFRAGGPYSARGGSYGGYGGNDFSGYGMYGAGGIGAYREDPSMGYSARYGAGFSRGYD 549
           G G+   G   A  G+YGGY G+   GYG     G GA    P  GY +  G      +D
Sbjct: 246 GAGY-GNGSNGAGYGAYGGYTGS-AGGYGAGATAGYGA-TNIPGAGYGSSTGVAPRNSWD 305

Query: 550 --FRGGYGGPDESYGAYNSG-GAPNA-----------------GGYAGSYDMGMGTGYP- 566
                GYG P    GA +SG G P A                 GGY+GS D G G     
Sbjct: 306 TPASSGYGNPGYGSGAAHSGYGVPGAAPPTQSPSGYSNQGYGYGGYSGS-DSGYGNQAAY 365

[Close]

BLAST of Spg001916.1 vs. ExPASy Swiss-Prot
Match: Q08473 (RNA-binding protein squid OS=Drosophila melanogaster OX=7227 GN=sqd PE=1 SV=3)

HSP 1 Score: 115.5 bits (288), Expect = 1.9e-24
Identity = 125/366 (34.15%), Postives = 171/366 (46.72%), Query Frame = 0


Query: 218 ATNGEHDDAKPLNHKDDGSRHDPPSHADGASAGKIFVGGLPRETTS-------GWFFFLR 277
           +TNG  D+    + + D  R             K+FVGGL  ETT        G +  + 
Sbjct: 37  STNGSSDNQSAASGQRDDDR-------------KLFVGGLSWETTEKELRDHFGKYGEIE 96

Query: 278 LYVSYAVDRKTGHPRGFGFVTYADHSVVDKV-IEDTHIINGKQVEIKRTIPKGSSSSRDF 337
             ++   D +TG  RGF F+ + +   +DKV   D HIIN K+V+ K+   +        
Sbjct: 97  -SINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHG------ 156

Query: 338 KTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETEQAVDDL 397
              KIFVGG+ T + ++E + +F Q+G + E ++  D   S+ +GF FITF++EQ V DL
Sbjct: 157 ---KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDL 216

Query: 398 LANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGYGDSYGEFGGGGYGGG 457
           L    + ++AG +V++K+A PK  N      +          G  G   G  G GGYGG 
Sbjct: 217 LKTPKQ-KIAGKEVDVKRATPKPENQMMGGMR---------GGPRGGMRG--GRGGYGGR 276

Query: 458 FRAGGPYSARGGSYGGYGGNDFSGYGMYGAGGIGAYREDPSMGYSARYGAGFSRGYDFRG 517
                 +  + GSYGGYGG    GYG YGAGG G Y           Y  G+  GYD+  
Sbjct: 277 GGYNNQWDGQ-GSYGGYGG----GYGGYGAGGYGDY-----------YAGGYYNGYDY-- 336

Query: 518 GYGGPDESYGAYNSGGAPNAGGYAGSYDMGMGTGYPAGGRGSFYGSRGAGGYDGAGSAPS 576
           GY G    YG Y  G   N  G  G  +MG G G P GG G   G    GG    G    
Sbjct: 337 GYDG----YG-YGGGFEGNGYGGGGGGNMGGGRGGPRGGGGPKGGGGFNGGKQRGGGGRQ 344

[Close]

BLAST of Spg001916.1 vs. ExPASy Swiss-Prot
Match: P09651 (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens OX=9606 GN=HNRNPA1 PE=1 SV=5)

HSP 1 Score: 110.2 bits (274), Expect = 8.1e-23
Identity = 120/340 (35.29%), Postives = 161/340 (47.35%), Query Frame = 0


Query: 251 KIFVGGLPRETT--------SGWFFFLRLYVSYAVDRKTGHPRGFGFVTYADHSVVDKVI 310
           K+F+GGL  ETT          W       V    D  T   RGFGFVTYA    VD  +
Sbjct: 15  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMR--DPNTKRSRGFGFVTYATVEEVDAAM 74

Query: 311 E-DTHIINGKQVEIKRTIPKGSSS--SRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVK 370
               H ++G+ VE KR + +  S         KKIFVGGI    +E   RD+F QYG+++
Sbjct: 75  NARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 134

Query: 371 EHQIMRDHSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPAP 430
             +IM D  + + RGF F+TF+   +VD ++       + G   E++KA  K+     + 
Sbjct: 135 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH-TVNGHNCEVRKALSKQEMASASS 194

Query: 431 SKRYHDSRPSYSGGYGDSYGEFGGGGYGGGFRAGGPY--SARGGSYGGYGG--NDFSGYG 490
           S+R      ++ GG G  +G     G GG F   G +  S  GG YGG G   N F   G
Sbjct: 195 SQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDG 254

Query: 491 MYGAGGIGAYREDPSMGYSARYGAGFSRGYDFRG-GYGGPDESYGAYNSGGAPNAGGYAG 550
            YG GG G        G S  YG+G  +GY  +G GYGG   SY +YN+GG    GG +G
Sbjct: 255 GYGGGGPG------YSGGSRGYGSG-GQGYGNQGSGYGG-SGSYDSYNNGGGGGFGGGSG 314

Query: 551 SYDMGMGTGYPAGG----RGSFYGSRGAGGYDGAGSAPSG 571
           S + G G  Y   G    + S +G    G + G  S P G
Sbjct: 315 S-NFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYG 342

[Close]

BLAST of Spg001916.1 vs. ExPASy Swiss-Prot
Match: Q8BG05 (Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus OX=10090 GN=Hnrnpa3 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.4e-22
Identity = 127/352 (36.08%), Postives = 162/352 (46.02%), Query Frame = 0


Query: 238 HDPPSHADGASAGKIFVGGLPRETTSG--------WFFFLRLYVSYAVDRKTGHPRGFGF 297
           HDP    +     K+F+GGL  ETT          W       V    D +T   RGFGF
Sbjct: 26  HDP---KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMR--DPQTKRSRGFGF 85

Query: 298 VTYADHSVVDKVI-EDTHIINGKQVEIKRTIPKGSS--SSRDFKTKKIFVGGIPTSVDED 357
           VTY+    VD  +    H ++G+ VE KR + +  S         KKIFVGGI    +E 
Sbjct: 86  VTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEY 145

Query: 358 EFRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIK 417
             RD+F +YG+++  ++M D  + + RGF F+TF+    VD ++       + G   E+K
Sbjct: 146 NLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYH-TINGHNCEVK 205

Query: 418 KAEPKKANPPPAPSKRYHDSRPSYSGGYGDSYGEFGGGGYGGGFRAGGPYSARGGSYGGY 477
           KA  K+     A S+R    R   SG +    G FGGG  GG F  GG +  RGG YGG 
Sbjct: 206 KALSKQ-EMQSAGSQR---GRGGGSGNFMGRGGNFGGG--GGNFGRGGNFGGRGG-YGGG 265

Query: 478 GGNDFSGYGMYGAGGIGAYREDPSMGYSARYGAGFSRGYDFRGGYGGPDESYGAYNSGGA 537
           GG     YG    GG G Y  +   G    YG G   GY  RGGYGG    YG  N GG 
Sbjct: 266 GGGSRGSYG----GGDGGY--NGFGGDGGNYGGG--PGYSSRGGYGGGGPGYG--NQGGG 325

Query: 538 PNAGGYAGSYDMGMGTGYPAGGR--GSFYGSRGAGGYDGAGSAPSGRYHPYG 577
              GG  G YD     GY  GG   G  YG  G G Y+  G+    +   YG
Sbjct: 326 YGGGG--GGYD-----GYNEGGNFGGGNYG--GGGNYNDFGNYSGQQQSNYG 345

[Close]

BLAST of Spg001916.1 vs. ExPASy Swiss-Prot
Match: Q6URK4 (Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus OX=10116 GN=Hnrnpa3 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.4e-22
Identity = 127/352 (36.08%), Postives = 162/352 (46.02%), Query Frame = 0


Query: 238 HDPPSHADGASAGKIFVGGLPRETTSG--------WFFFLRLYVSYAVDRKTGHPRGFGF 297
           HDP    +     K+F+GGL  ETT          W       V    D +T   RGFGF
Sbjct: 26  HDP---KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMR--DPQTKRSRGFGF 85

Query: 298 VTYADHSVVDKVI-EDTHIINGKQVEIKRTIPKGSS--SSRDFKTKKIFVGGIPTSVDED 357
           VTY+    VD  +    H ++G+ VE KR + +  S         KKIFVGGI    +E 
Sbjct: 86  VTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEY 145

Query: 358 EFRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIK 417
             RD+F +YG+++  ++M D  + + RGF F+TF+    VD ++       + G   E+K
Sbjct: 146 NLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYH-TINGHNCEVK 205

Query: 418 KAEPKKANPPPAPSKRYHDSRPSYSGGYGDSYGEFGGGGYGGGFRAGGPYSARGGSYGGY 477
           KA  K+     A S+R    R   SG +    G FGGG  GG F  GG +  RGG YGG 
Sbjct: 206 KALSKQ-EMQSAGSQR---GRGGGSGNFMGRGGNFGGG--GGNFGRGGNFGGRGG-YGGG 265

Query: 478 GGNDFSGYGMYGAGGIGAYREDPSMGYSARYGAGFSRGYDFRGGYGGPDESYGAYNSGGA 537
           GG     YG    GG G Y  +   G    YG G   GY  RGGYGG    YG  N GG 
Sbjct: 266 GGGSRGSYG----GGDGGY--NGFGGDGGNYGGG--PGYSSRGGYGGGGPGYG--NQGGG 325

Query: 538 PNAGGYAGSYDMGMGTGYPAGGR--GSFYGSRGAGGYDGAGSAPSGRYHPYG 577
              GG  G YD     GY  GG   G  YG  G G Y+  G+    +   YG
Sbjct: 326 YGGGG--GGYD-----GYNEGGNFGGGNYG--GGGNYNDFGNYSGQQQSNYG 345

[Close]

BLAST of Spg001916.1 vs. ExPASy TrEMBL
Match: A0A6J1F7E2 (heterogeneous nuclear ribonucleoprotein 1 OS=Cucurbita moschata OX=3662 GN=LOC111441536 PE=4 SV=1)

HSP 1 Score: 652.1 bits (1681), Expect = 2.1e-183
Identity = 345/392 (88.01%), Postives = 352/392 (89.80%), Query Frame = 0


Query: 205 MSENSMDSKPNDAATNGEHDDAKPLNHKDDGSRHDPPSHADGASAGKIFVGGLPRETTSG 264
           MSENSMDSK NDAATNGEH+DAKPLNHKDDGSRHDPPSH DGASAGKIFVGGLPRETTS 
Sbjct: 1   MSENSMDSKGNDAATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSA 60

Query: 265 WFFFLRLYVSYA--------VDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVEIK 324
              F++ +  Y          DRKTGHPRGFGFVTYAD SVVDKVIEDTHIINGKQVEIK
Sbjct: 61  Q--FVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIK 120

Query: 325 RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFG 384
           RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFG
Sbjct: 121 RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFG 180

Query: 385 FITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGYGD 444
           FITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPP PSKRYHDSRPSYSG YGD
Sbjct: 181 FITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPPPSKRYHDSRPSYSGTYGD 240

Query: 445 SYGEFGGGGYGGGFRAGGPYSARGGSYGGYGGNDFSGYGMYGAGGIGAYREDPSMGYSAR 504
           +YGEFGGGGYGGGFRAGGPY ARGG YGGYGGNDFSGYGMYG GGIGAYREDPSMGYSAR
Sbjct: 241 AYGEFGGGGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAYREDPSMGYSAR 300

Query: 505 YGAGFSRGYDFRGGYGGPDESYGAYNSGGAPNAGGYAGSYDMGMGTGYPAGGRGSFYGSR 564
           YGAGFSRGYDFRGGYGGPDESYGAYNS  APN GGYAGSYDMG+GTGYP+GGRGSFYGSR
Sbjct: 301 YGAGFSRGYDFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIGTGYPSGGRGSFYGSR 360

Query: 565 -----------GAGGYDGAGSAPSGRYHPYGR 578
                      G GGYDGAGSAPSGRYHPYGR
Sbjct: 361 GGGGGGGGGGGGGGGYDGAGSAPSGRYHPYGR 390

[Close]

BLAST of Spg001916.1 vs. ExPASy TrEMBL
Match: A0A6J1J2Y6 (heterogeneous nuclear ribonucleoprotein 1 OS=Cucurbita maxima OX=3661 GN=LOC111481383 PE=4 SV=1)

HSP 1 Score: 651.7 bits (1680), Expect = 2.8e-183
Identity = 344/390 (88.21%), Postives = 352/390 (90.26%), Query Frame = 0


Query: 205 MSENSMDSKPNDAATNGEHDDAKPLNHKDDGSRHDPPSHADGASAGKIFVGGLPRETTSG 264
           MSENSMDSK NDAATNGEH+DAKPLNHKDDGSRHDPPSH DGASAGKIFVGGLPRETTS 
Sbjct: 1   MSENSMDSKGNDAATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSA 60

Query: 265 WFFFLRLYVSYA--------VDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVEIK 324
              F++ +  Y          DRKTGHPRGFGFVTYAD SVVDKVIEDTHIINGKQVEIK
Sbjct: 61  Q--FVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIK 120

Query: 325 RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFG 384
           RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFG
Sbjct: 121 RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFG 180

Query: 385 FITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGYGD 444
           FITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKK+NPPP PSKRYHDSRPSYSG YGD
Sbjct: 181 FITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKSNPPPPPSKRYHDSRPSYSGTYGD 240

Query: 445 SYGEFGGGGYGGGFRAGGPYSARGGSYGGYGGNDFSGYGMYGAGGIGAYREDPSMGYSAR 504
           +YGEFGGGGYGGGFRAGGPY ARGG YGGYGGNDFSGYGMYG GGIGAYREDPSMGYSAR
Sbjct: 241 AYGEFGGGGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAYREDPSMGYSAR 300

Query: 505 YGAGFSRGYDFRGGYGGPDESYGAYNSGGAPNAGGYAGSYDMGMGTGYPAGGRGSFYGSR 564
           YGAGFSRGYDFRGGYGGPDESYGAYNS  APN GGYAGSYDMG+GTGYP+GGRGSFYGSR
Sbjct: 301 YGAGFSRGYDFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIGTGYPSGGRGSFYGSR 360

Query: 565 ---------GAGGYDGAGSAPSGRYHPYGR 578
                    G GGYDGAGSAPSGRYHPYGR
Sbjct: 361 GGGGGGGGGGGGGYDGAGSAPSGRYHPYGR 388

[Close]

BLAST of Spg001916.1 vs. ExPASy TrEMBL
Match: A0A0A0LG75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G839850 PE=4 SV=1)

HSP 1 Score: 651.0 bits (1678), Expect = 4.7e-183
Identity = 342/385 (88.83%), Postives = 351/385 (91.17%), Query Frame = 0


Query: 205 MSENSMDSKPNDAATNGEHDDAKPLNHKDDGSRHDPPSHADGASAGKIFVGGLPRETTSG 264
           MSENSMDSKPND ATNGEH+DAKPLNHKDDGSRHDPPSH DGASAGKIFVGGLPRETTS 
Sbjct: 1   MSENSMDSKPNDVATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSA 60

Query: 265 WFFFLRLYVSYA--------VDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVEIK 324
              F++ +  Y          DRKTGHPRGFGFVTYAD SVVDKVIEDTHIINGKQVEIK
Sbjct: 61  Q--FVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIK 120

Query: 325 RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFG 384
           RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYG VKEHQIMRDHSTSRSRGFG
Sbjct: 121 RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGVVKEHQIMRDHSTSRSRGFG 180

Query: 385 FITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGYGD 444
           FITFETEQAVDDLLANGNRLE+AGSQVEIKKAEPKKANPPPAPSKR+HDSRPSYSG YGD
Sbjct: 181 FITFETEQAVDDLLANGNRLEMAGSQVEIKKAEPKKANPPPAPSKRFHDSRPSYSGAYGD 240

Query: 445 SYGEFGGGGYGGGFRAGGPYSARGGSYGGYGGNDFSGYGMYGAGGIGAYREDPSMGYSAR 504
           +YGEFGGGGYGG FRAGGPY ARGG YGGYGGNDFSGYGMYG GG+GAYREDPSMGYSAR
Sbjct: 241 AYGEFGGGGYGGSFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGMGAYREDPSMGYSAR 300

Query: 505 YGAGFSRGYDFRGGYGGPDESYGAYNSGGAPNAGGYAGSYDMGMGTGYPAGGRGSFYGSR 564
           YGA FSRGYDFRGGYGGPDESYGAYNSGGAP+ GGYAGSYDMGMGTGY AGGRGSFYGSR
Sbjct: 301 YGASFSRGYDFRGGYGGPDESYGAYNSGGAPSTGGYAGSYDMGMGTGYAAGGRGSFYGSR 360

Query: 565 ----GAGGYDGAGSAPSGRYHPYGR 578
               G GGYDGAGSAPSGRYHPYGR
Sbjct: 361 GGGGGGGGYDGAGSAPSGRYHPYGR 383

[Close]

BLAST of Spg001916.1 vs. ExPASy TrEMBL
Match: A0A5D3D587 (Heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00140 PE=4 SV=1)

HSP 1 Score: 642.9 bits (1657), Expect = 1.3e-180
Identity = 342/383 (89.30%), Postives = 349/383 (91.12%), Query Frame = 0


Query: 205 MSENSMDSKPNDAATNGEHDDAKPLNHKDDGSRHDPPSHADGASAGKIFVGGLPRETTSG 264
           MSENSMDSKPND ATNGEHDDAKPLNHKDDGSRHDPP H DGASAGKIFVGGLPRETTS 
Sbjct: 1   MSENSMDSKPNDVATNGEHDDAKPLNHKDDGSRHDPPPHGDGASAGKIFVGGLPRETTSA 60

Query: 265 WFFFLRLYVSYA--------VDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVEIK 324
              F++ +  Y          DRKTGHPRGFGFVTYAD SVVDKVIEDTHIINGKQVEIK
Sbjct: 61  Q--FVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIK 120

Query: 325 RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFG 384
           RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYG VKEHQIMRDHSTSRSRGFG
Sbjct: 121 RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGVVKEHQIMRDHSTSRSRGFG 180

Query: 385 FITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGY-G 444
           FITFETEQAVDDLLANGNRLE+AGSQVEIKKAEPKKANPPPAPSKRYH+SRPSYSG Y G
Sbjct: 181 FITFETEQAVDDLLANGNRLEMAGSQVEIKKAEPKKANPPPAPSKRYHESRPSYSGAYGG 240

Query: 445 DSYGEFGGGGYGGGFRAGGPYSARGGSYGGYGGNDFSGYGMYGAGGIGAYREDPSMGYSA 504
           D+YGEFGGGGYGG FRAGGPY ARGG YGGYGGNDFSGYGMYG GG+GAYREDPSMGYSA
Sbjct: 241 DAYGEFGGGGYGGSFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGMGAYREDPSMGYSA 300

Query: 505 RYGAGFSRGYDFRGGYGGPDESYGAYNSGGAPNAGGYAGSYDMGMGTGYPAGGRGSFYGS 564
           RYGA FSRGYDFRGGYGGPDESYGAYNSGGAPN GGYA SYDMGMGTGY AGGRGSFYGS
Sbjct: 301 RYGASFSRGYDFRGGYGGPDESYGAYNSGGAPNTGGYA-SYDMGMGTGYAAGGRGSFYGS 360

Query: 565 R-GAGGYDGAGSAPSGRYHPYGR 578
           R G GGYDGAGSAPSGRYHPYGR
Sbjct: 361 RGGGGGYDGAGSAPSGRYHPYGR 380

[Close]

BLAST of Spg001916.1 vs. ExPASy TrEMBL
Match: A0A1S4E4Y8 (heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC107992116 PE=4 SV=1)

HSP 1 Score: 642.9 bits (1657), Expect = 1.3e-180
Identity = 342/383 (89.30%), Postives = 349/383 (91.12%), Query Frame = 0


Query: 205 MSENSMDSKPNDAATNGEHDDAKPLNHKDDGSRHDPPSHADGASAGKIFVGGLPRETTSG 264
           MSENSMDSKPND ATNGEHDDAKPLNHKDDGSRHDPP H DGASAGKIFVGGLPRETTS 
Sbjct: 1   MSENSMDSKPNDVATNGEHDDAKPLNHKDDGSRHDPPPHGDGASAGKIFVGGLPRETTSA 60

Query: 265 WFFFLRLYVSYA--------VDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVEIK 324
              F++ +  Y          DRKTGHPRGFGFVTYAD SVVDKVIEDTHIINGKQVEIK
Sbjct: 61  Q--FVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIK 120

Query: 325 RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFG 384
           RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYG VKEHQIMRDHSTSRSRGFG
Sbjct: 121 RTIPKGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGVVKEHQIMRDHSTSRSRGFG 180

Query: 385 FITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGY-G 444
           FITFETEQAVDDLLANGNRLE+AGSQVEIKKAEPKKANPPPAPSKRYH+SRPSYSG Y G
Sbjct: 181 FITFETEQAVDDLLANGNRLEMAGSQVEIKKAEPKKANPPPAPSKRYHESRPSYSGAYGG 240

Query: 445 DSYGEFGGGGYGGGFRAGGPYSARGGSYGGYGGNDFSGYGMYGAGGIGAYREDPSMGYSA 504
           D+YGEFGGGGYGG FRAGGPY ARGG YGGYGGNDFSGYGMYG GG+GAYREDPSMGYSA
Sbjct: 241 DAYGEFGGGGYGGSFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGMGAYREDPSMGYSA 300

Query: 505 RYGAGFSRGYDFRGGYGGPDESYGAYNSGGAPNAGGYAGSYDMGMGTGYPAGGRGSFYGS 564
           RYGA FSRGYDFRGGYGGPDESYGAYNSGGAPN GGYA SYDMGMGTGY AGGRGSFYGS
Sbjct: 301 RYGASFSRGYDFRGGYGGPDESYGAYNSGGAPNTGGYA-SYDMGMGTGYAAGGRGSFYGS 360

Query: 565 R-GAGGYDGAGSAPSGRYHPYGR 578
           R G GGYDGAGSAPSGRYHPYGR
Sbjct: 361 RGGGGGYDGAGSAPSGRYHPYGR 380

[Close]

BLAST of Spg001916.1 vs. TAIR 10
Match: AT5G40490.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 343.6 bits (880), Expect = 3.1e-94
Identity = 233/428 (54.44%), Postives = 265/428 (61.92%), Query Frame = 0


Query: 210 MDSKPNDAATNGEHDDAKPLNH-KDDGSRHDPPSHADGASAGKIFVGGLPRETTSGWFFF 269
           MD    +     E  D KP    +DD  +  P S     SAGKIFVGGL RETTS    F
Sbjct: 1   MDPYGTETVIEDEIHDPKPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSA--EF 60

Query: 270 LRLYVSYA--------VDRKTGHPRGFGFVTYADHSVVDKVIEDTHIINGKQVEIKRTIP 329
           L+ +  Y          DRKTG PRGFGFVTYAD SVVDKVI+D HII GKQVEIKRTIP
Sbjct: 61  LKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDNHIIIGKQVEIKRTIP 120

Query: 330 KGSSSSRDFKTKKIFVGGIPTSVDEDEFRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITF 389
           +GS SS DFKTKKIFVGGIP+SVD+DEF++FFMQ+GE+KEHQIMRDHST RSRGFGF+T+
Sbjct: 121 RGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTY 180

Query: 390 ETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPAPSKRYHDSRPSYSGGYGDSYGE 449
           E+E  VD LLA GNR+EL+G+QVEIKKAEPKK N    PSKR+ DSR ++ GGYGD YG 
Sbjct: 181 ESEDMVDHLLAKGNRIELSGTQVEIKKAEPKKPNSVTTPSKRFGDSRSNFGGGYGDGYGG 240

Query: 450 FGGGGY---GGGFRAGGPY-SARGGSYGGYGGNDFSGYGMYG-AGGIGAYREDPSMGYSA 509
             GGGY   GG +++GG Y   R G YGGYGG +F GYG  G  GG+G YR +P++GYS 
Sbjct: 241 GHGGGYGGPGGPYKSGGGYGGGRSGGYGGYGG-EFGGYGGGGYGGGVGPYRGEPALGYSG 300

Query: 510 RY---GAGFSR-GYDF---------------------RGGYGGPDESY---------GAY 569
           RY   G G++R GY                        GGYGGP  SY         G Y
Sbjct: 301 RYGGGGGGYNRGGYSMGGGGGYGGGPGDMYGGSYGEPGGGYGGPSGSYGGGYGSSGIGGY 360

Query: 570 NSG-GAPNAGGY--AGSYDM---------GMGTGYPAGGRGSFYGSRGAGGYDGAGSAPS 578
             G G    GGY   G YDM         G G G    G GSFYG  G GG  G G   S
Sbjct: 361 GGGMGGAGGGGYRGGGGYDMGGVGGGGAGGYGAGGGGNGGGSFYG--GGGGRGGYGGGGS 420

[Close]

BLAST of Spg001916.1 vs. TAIR 10
Match: AT3G13224.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 271.6 bits (693), Expect = 1.5e-72
Identity = 190/364 (52.20%), Postives = 234/364 (64.29%), Query Frame = 0


Query: 236 SRHDPPSHADGASAGKIFVGGLPRETTSGWF---FFLRLYVSYAV---DRKTGHPRGFGF 295
           SR+D     DGAS GKIF+GGL ++TT+  F   F     ++ +V   DR TG PRGFGF
Sbjct: 5   SRNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGF 64

Query: 296 VTYADHSVVDKVIEDTHIINGKQVEIKRTIPKGS--SSSRDFKTKKIFVGGIPTSVDEDE 355
           +T+AD SVVDKVIEDTH+INGKQVEIKRTIPKG+  + S+D KTKKIFVGGIP++V EDE
Sbjct: 65  ITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDE 124

Query: 356 FRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIKK 415
            +DFF +YG V EHQ++RDH T+RSRGFGF+ F++E+ VD+LL+ GN +++A +QVEIKK
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKK 184

Query: 416 AEPKKANPPPAPSKRYHDSRPSYSGGYGDSYGEFGG--GGYG---GGFRA-GGPYSARGG 475
           AEPKK+     PS   H    S +  Y    G +GG  GGYG   G  R+ GGP S   G
Sbjct: 185 AEPKKSLNRSPPSYGSHPRGRSSNDSYASYGGPYGGFDGGYGHPPGPIRSHGGPASRYAG 244

Query: 476 SYG---GYGGNDF-SGYGMYGAGGIGAYREDPSMGYSAR---YGAGF-SRGYDFRGGYGG 535
            YG   G  G +F  GY  YG G +G YR +P +GYS+R   YG+GF   GY  RGG G 
Sbjct: 245 GYGYGRGSVGPEFGGGYNNYGGGSLGGYRNEPPLGYSSRFGPYGSGFGGEGYG-RGGEG- 304

Query: 536 PDESYGAYNSGGAPNAGGYAGSYDMGMGTGYPAGGRGSFYGSRGAGGYDGAGSAPSGRYH 578
              +Y  Y  GG    GGY G    G G  Y +GG G  Y   GAGG  G G + S RYH
Sbjct: 305 ---AYLGYPRGGGEGYGGYGGP---GYGGAYESGGPGGSY--EGAGGPYGRGYSSSSRYH 358

[Close]

BLAST of Spg001916.1 vs. TAIR 10
Match: AT3G13224.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 210.7 bits (535), Expect = 3.1e-54
Identity = 107/180 (59.44%), Postives = 139/180 (77.22%), Query Frame = 0


Query: 236 SRHDPPSHADGASAGKIFVGGLPRETTSGWF---FFLRLYVSYAV---DRKTGHPRGFGF 295
           SR+D     DGAS GKIF+GGL ++TT+  F   F     ++ +V   DR TG PRGFGF
Sbjct: 5   SRNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGF 64

Query: 296 VTYADHSVVDKVIEDTHIINGKQVEIKRTIPKGS--SSSRDFKTKKIFVGGIPTSVDEDE 355
           +T+AD SVVDKVIEDTH+INGKQVEIKRTIPKG+  + S+D KTKKIFVGGIP++V EDE
Sbjct: 65  ITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDE 124

Query: 356 FRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIKK 408
            +DFF +YG V EHQ++RDH T+RSRGFGF+ F++E+ VD+LL+ GN +++A +QV + K
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVSLYK 184

[Close]

BLAST of Spg001916.1 vs. TAIR 10
Match: AT1G17640.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 173.7 bits (439), Expect = 4.3e-43
Identity = 139/350 (39.71%), Postives = 187/350 (53.43%), Query Frame = 0


Query: 242 SHADGASAGKIFVGGLPRETTSGWF------FFLRLYVSYAVDRKTGHPRGFGFVTYADH 301
           S +  +S GK+FVGG+  ETT+  F      F   +      DR TG+PRGFGFVT+AD 
Sbjct: 58  SSSSMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADS 117

Query: 302 SVVDKVIEDTHIINGKQVEIKRTIPKGSSSS---RDFKTKKIFVGGIPTSVDEDEFRDFF 361
           +V +KV+E+ H+I+ ++V++KRT+P+G   +      KT+KIFVGG+P  ++EDE +++F
Sbjct: 118 AVAEKVLEEDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYF 177

Query: 362 MQYGEVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKK 421
             YG++ EHQIM DH T RSRGFGF+TF+TE +VD L ++G   EL   QVEIK+AEPK+
Sbjct: 178 CVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKR 237

Query: 422 ANPPPA----PSKRYHDSRPSYSGGYGDSYGEFGG-GGYGGGFRAGGPYSARGGSYGGYG 481
                +     +   +D   SYSG   + Y  + G GGYGG              YG Y 
Sbjct: 238 TGRDNSFRSYGASGKYDQEDSYSGKANEDYSMYSGYGGYGG--------------YGAYA 297

Query: 482 GNDF-SGYGMYGAGGIGAYREDPSMGYSARYGAGFSRGYDFRGGYGGPDESYGAYNSG-G 541
           GN   +  G YG GG          GY   YG G   G  F  GYG     Y    SG G
Sbjct: 298 GNSMVNPAGFYGYGG----------GYGYGYGYG---GQMFNMGYGA--GGYSHMGSGYG 357

Query: 542 APNAGGYAGSYDMGMGTGYPAGGRGSFYGSRGAGGYDGAGSAPSGRYHPY 576
              A  Y G    G G    + G+G+  G+ G+G           RYHPY
Sbjct: 358 VAAAAAYGGGKSHGNGNNGSSSGKGN--GTNGSG---------PDRYHPY 367

[Close]

BLAST of Spg001916.1 vs. TAIR 10
Match: AT2G33410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 142.9 bits (359), Expect = 8.1e-34
Identity = 144/396 (36.36%), Postives = 193/396 (48.74%), Query Frame = 0


Query: 250 GKIFVGGLPRETTSGWF------FFLRLYVSYAVDRKTGHPRGFGFVTYADHSVVDKVIE 309
           GK+F+GG+  +T           F   L V+   ++ TG PRGFGFV ++D +V+D+V++
Sbjct: 6   GKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65

Query: 310 DTHIINGKQVEIKRTI------PKGSS----SSRDF------KTKKIFVGGIPTSVDEDE 369
           D H I+ + V++KR +      P G S    +SR+F      +TKKIFVGG+P ++  DE
Sbjct: 66  DKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDE 125

Query: 370 FRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIKK 429
           FR +F  YG V +  IM D +T R RGFGF++F++E +V DL+ +    +L G QVE+K+
Sbjct: 126 FRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSV-DLVLHKTFHDLNGKQVEVKR 185

Query: 430 AEPKKANPPPA----------------------------PSKRYHDSR------PSYSG- 489
           A PK ANP  A                             S RY   +      P Y G 
Sbjct: 186 ALPKDANPGIASGGGRGSGGAGGFPGYGGSGGSGYEGRVDSNRYMQPQNTGSGYPPYGGS 245

Query: 490 GYGDSYG----EFGGGGYGG-GFRAGGPY---SARGGSYG-----GYGGNDFSGYGMYGA 549
           GYG  YG      G GG+GG G  AG PY   S  G  +G      +G    SGYG  G 
Sbjct: 246 GYGTGYGYGSNGVGYGGFGGYGNPAGAPYGNPSVPGAGFGSGPRSSWGAQAPSGYGNVGY 305

Query: 550 GGIGAYREDPSMGYSARYGAGFSRGYDFRG-GYGGPDESYG---AY-----NSGGAPN-- 564
           G    +      G +    AG S GY  +G GYGG D SYG   AY      SG  PN  
Sbjct: 306 GNAAPWGGSGGPGSAVMGQAGASAGYGSQGYGYGGNDSSYGTPSAYGAVGGRSGNMPNNH 365

The following BLAST results are available for this feature:

BLAST of Spg001916.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017783.1	1.2e-185	85.99	Nuclear pore complex protein, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_023528997.1	1.8e-184	88.52	LOW QUALITY PROTEIN: nuclear pore complex protein GP210 [Cucurbita pepo subsp. p...	[more]
KAG6581052.1	3.4e-183	88.24	Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp...	[more]
XP_022934343.1	4.4e-183	88.01	heterogeneous nuclear ribonucleoprotein 1 [Cucurbita moschata]	[more]
XP_022982535.1	5.7e-183	88.21	heterogeneous nuclear ribonucleoprotein 1 [Cucurbita maxima]	[more]

BLAST of Spg001916.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W034	3.1e-30	36.46	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP...	[more]
Q08473	1.9e-24	34.15	RNA-binding protein squid OS=Drosophila melanogaster OX=7227 GN=sqd PE=1 SV=3	[more]
P09651	8.1e-23	35.29	Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens OX=9606 GN=HNRNPA1 PE...	[more]
Q8BG05	2.4e-22	36.08	Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus OX=10090 GN=Hnrnpa3 P...	[more]
Q6URK4	2.4e-22	36.08	Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus OX=10116 GN=Hnrn...	[more]

BLAST of Spg001916.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F7E2	2.1e-183	88.01	heterogeneous nuclear ribonucleoprotein 1 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1J2Y6	2.8e-183	88.21	heterogeneous nuclear ribonucleoprotein 1 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A0A0LG75	4.7e-183	88.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G839850 PE=4 SV=1	[more]
A0A5D3D587	1.3e-180	89.30	Heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S4E4Y8	1.3e-180	89.30	heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC10799211...	[more]

BLAST of Spg001916.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40490.1	3.1e-94	54.44	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13224.2	1.5e-72	52.20	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13224.1	3.1e-54	59.44	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G17640.1	4.3e-43	39.71	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G33410.1	8.1e-34	36.36	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 333..406 e-value: 1.3E-20 score: 84.5 coord: 251..316 e-value: 1.9E-5 score: 34.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 334..403 e-value: 4.5E-16 score: 58.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 250..320 score: 9.456252
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 332..410 score: 18.990221
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 321..421 e-value: 5.5E-25 score: 89.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 249..320 e-value: 3.6E-11 score: 45.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 401..429
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 205..249
None	No IPR available	PANTHER	PTHR48033	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 210..577
None	No IPR available	PANTHER	PTHR48033:SF5	NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED	coord: 210..577
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 251..325
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 327..440

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg001916	Spg001916	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg001916.1-three_prime_utr	Spg001916.1-three_prime_utr-scaffold10:2276851..2277151	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg001916.1-cds	Spg001916.1-cds-scaffold10:2277152..2277679	CDS
Spg001916.1-cds	Spg001916.1-cds-scaffold10:2278738..2278907	CDS
Spg001916.1-cds	Spg001916.1-cds-scaffold10:2278986..2279085	CDS
Spg001916.1-cds	Spg001916.1-cds-scaffold10:2279168..2279272	CDS
Spg001916.1-cds	Spg001916.1-cds-scaffold10:2279377..2279458	CDS
Spg001916.1-cds	Spg001916.1-cds-scaffold10:2279611..2279816	CDS
Spg001916.1-cds	Spg001916.1-cds-scaffold10:2281084..2281230	CDS
Spg001916.1-cds	Spg001916.1-cds-scaffold10:2281309..2281704	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg001916.1-five_prime_utr	Spg001916.1-five_prime_utr-scaffold10:2281705..2281813	five_prime_UTR
Spg001916.1-five_prime_utr	Spg001916.1-five_prime_utr-scaffold10:2286211..2286474	five_prime_UTR
Spg001916.1-five_prime_utr	Spg001916.1-five_prime_utr-scaffold10:2287648..2287655	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg001916.1	Spg001916.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006378	mRNA polyadenylation
biological_process	GO:0048578	positive regulation of long-day photoperiodism, flowering
biological_process	GO:0048576	positive regulation of short-day photoperiodism, flowering
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003730	mRNA 3'-UTR binding
molecular_function	GO:0097157	pre-mRNA intronic binding