Spg001884.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg001884.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold10: 2018689 .. 2019481 (+)
Sequence length	471
RNA-Seq Expression	Spg001884.1
Synteny	Spg001884.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTTGTTGAAAATCAAAATCAAAGCTTGGGTAGAGTCCCCACAATAAAAAAAGTTGCTGAATTTATTGAATTCTCCATTCGAGAACGGAGGGATTTTGGTCCTAAGTGCTTTGTTCTTCGATTCGGAATCTCATCGTCATTATCATCAAATTCAAGAAAGAAATTATGAAAAAAAAAAGATTCCTTTTTTCTCACAAATTTGCCCAATCTTGGCTCTGGATTTTTTTGTTTTATTTTTTTTTCTTTGTGACAAAATAATAGAGAATTAAATGGTGTTTATAAGTGAAAATGAGTGTTTAATTAAAGAAAGAAACAAAAGAGTTAAAAATGGTTTTAATTTTACCCAAAAACAGAAAAGGACAGTTTTATCAAGAAATCGACTGCAAGGCCAAGATGAGTTTTCTGTTCTGTACAAAACCAACTGCAGGAATCAGCAAGGATGTGCAAAATCGACTGCAAGGGGAGACGACGAACTGCTATCGACTGCAAAGGAAGATGACGAGGACGAACTGCTATGCAAATCGACTGTGTTCTGTTCGACTGCAAGGCTGAAACCGAGAAGGAAAAGAGTGAGATCGAGAGACGTGCGACTGGAATTGAAGTTCTGGCGCTGTGTGTCCGTGGCATGCGACTGGAATCGAAGGAGAAAACTGAGATGTAGGGAGTTGTTGGCTGGAATCGAAGGAGAATTGGCGTGCGGCTGGAATCGAAGGAAAAAAAACGTGATTTTCTATGGCGTGCGGCTGAAATCGAAGGAGAAGAAGGAGATTTTTGTGTCATGCTATTGA

mRNA sequence

ATGGAGCTTGTTGAAAATCAAAATCAAAGCTTGGGTAGAGTCCCCACAATAAAAAAAGTTGCTGAATTTATTGAATTCTCCATTCGAGAACGGAGGGATTTTGGTCCTAAGAATCAGCAAGGATGTGCAAAATCGACTGCAAGGGGAGACGACGAACTGCTATCGACTGCAAAGGAAGATGACGAGGACGAACTGCTATGCAAATCGACTGTGTTCTGTTCGACTGCAAGGCTGAAACCGAGAAGGAAAAGAGTGAGATCGAGAGACGTGCGACTGGAATTGAAGTTCTGGCGCTGTGTGTCCGTGGCATGCGACTGGAATCGAAGGAGAAAACTGAGATGTAGGGAGTTGTTGGCTGGAATCGAAGGAGAATTGGCGTGCGGCTGGAATCGAAGGAAAAAAAACGTGATTTTCTATGGCGTGCGGCTGAAATCGAAGGAGAAGAAGGAGATTTTTGTGTCATGCTATTGA

Coding sequence (CDS)

ATGGAGCTTGTTGAAAATCAAAATCAAAGCTTGGGTAGAGTCCCCACAATAAAAAAAGTTGCTGAATTTATTGAATTCTCCATTCGAGAACGGAGGGATTTTGGTCCTAAGAATCAGCAAGGATGTGCAAAATCGACTGCAAGGGGAGACGACGAACTGCTATCGACTGCAAAGGAAGATGACGAGGACGAACTGCTATGCAAATCGACTGTGTTCTGTTCGACTGCAAGGCTGAAACCGAGAAGGAAAAGAGTGAGATCGAGAGACGTGCGACTGGAATTGAAGTTCTGGCGCTGTGTGTCCGTGGCATGCGACTGGAATCGAAGGAGAAAACTGAGATGTAGGGAGTTGTTGGCTGGAATCGAAGGAGAATTGGCGTGCGGCTGGAATCGAAGGAAAAAAAACGTGATTTTCTATGGCGTGCGGCTGAAATCGAAGGAGAAGAAGGAGATTTTTGTGTCATGCTATTGA

Protein sequence

MELVENQNQSLGRVPTIKKVAEFIEFSIRERRDFGPKNQQGCAKSTARGDDELLSTAKEDDEDELLCKSTVFCSTARLKPRRKRVRSRDVRLELKFWRCVSVACDWNRRRKLRCRELLAGIEGELACGWNRRKKNVIFYGVRLKSKEKKEIFVSCY

Homology

The following BLAST results are available for this feature:

BLAST of Spg001884.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg001884.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg001884.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg001884.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..55

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg001884	Spg001884	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg001884.1-cds	Spg001884.1-cds-scaffold10:2018689..2018798	CDS
Spg001884.1-cds	Spg001884.1-cds-scaffold10:2019121..2019481	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg001884.1	Spg001884.1-protein	polypeptide