Spg001670.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg001670.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein root UVB sensitive 1, chloroplastic isoform X1
Locationscaffold10: 131717 .. 141634 (+)
Sequence length2112
RNA-Seq ExpressionSpg001670.1
SyntenySpg001670.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCAAATGGGATGGCTATATGTGCTGGATTGATGCCTGTAGTTGTTCATCTTCCAATCCGATTAACTGACTTTTGTAGTTTTCTTAAGGAGCCAAAAATGGGTTTACTATCTACTGAAGCAAAGGAATCAGCAGCTAATATTGAAAAGCGACTTCAATTGGGATCTAAGCTCAGTGATGTGGCGAGCTGTGAAGAGGACGTTCTTGAACTCTTGAGTCTGTATAAAATTGAAAATTACATTCTGTCAGAGCACAGGGGAAGATATTGTGTAAGTAATCTAACCCATTTCATTTTAGTCCTGCATAATACTTTTCCTTGGGAAGGGCGAAGTTGGTGGATTTCTTTTTTCCTGCTCTTAAGTAAATATGCATTTCGGGTGAATGTTGTTTCTTCCAGTAATCACTAAACTGTATTTCAAATGTGTGCATTGTTGTGGATTATGGAGCTTTCTACTCCCAGTCCTTCCTATAAGTACTCGATATGAAGCTTTACACCCTTATTTTCGTTGAAGTGTTGGTTGACTAATTTTATTGACCAACACTTGGAAACTGTCTCATAAATTGTGTTTGACATATAGAAGTGTTGAAAAAAGATCGAGTAATTAAATTTAGGTTTTGAAACTTTAAGTTCAAAACACTATACCATTATTTTCTTCCTCATTTAATATCTTGATAATATATGCAAACCTGATGTAGGCTTATGTTTATTGTGGGGTTATTTTAGTTGTTGAGGATTTTTATTTAAGCCTTTTAATTCTCTATAAACTTCCAGCCAACCAATTAGTTGGTTATGGTTAGTTGGTTTTGTAGCTTAGTTGGTTAGTTTGTGTATAAATGGCCAAATGGGCCTCCCCTCATTTTACAAGTTGAATTTTATACGTCAAAATTAAACTAATATTTGGGTCCAAATGTAAGATGAAATGTTGAAAGAGAGTAGTTTAAGCTTCTTGGTCTAAAGGTAATTTAGCAAGTATAAACAGTAAAATCAGGCTTTGGAGGCTTCTAGAAAAATTCTTGAAGAATTTGAAAGAGTCTGTGACGAGCTTTAGTCAGTCACAAGTAGGAATGTGCAGAAACCGAATCGAACCGGTCTGAACCGACTAGTTCGGTCCGGTTTTGCCCTCTTTTCTTGGTTTCCTCGGTTTATCTCTATAAAAAAAAAACCGAGCTATTTAGTGTGGTCTTCGGTTTAACCTTTAAAAAAACCAACTAAAATCGAATCGAACCGAATACTAACAGTTTTAAATAATCCAGCGCAATCCAAAATAATTCAGCCCACTAAAGGTAGCCCACCCCAACAAATTAGGGTTTCTTCTACCCCAACCCTAAACTTTTTACCCTTTCCTCTCCCTTCCTCTTGTTGTTTCCCCTCCCCCTCTCTACCCCACTCTTCTTTCTCTCTCTATTGCAACCTCTTTTCCCCTCTCACTCTTCCTACTCTTCCTTTTCGAGTTTAGACAGTCACCACCTCTTCGCCATTGTCGTCGTTGATTTCTTTTCATCATCGATGTCATCAATTTCTCTTCGCCATTGCCACCGTCGATTTCCTTGGCCATCCTTCACCATTGTTGTCTTCTCTTCCCTTTTTCTCATGATCGACGGTTTGCCCAAACCCTCTGTCGATCTCTTCGTTTTCGCTTTCTTATCTCTCTTCCTCCTCTCTTTCTCTCTATCACTCCGCATTCGTTTATATATATATATATATATATATATATATATATATATGTTTATTGTGTTGTATTTTTACTTTTAAGAAAAACATCGTGTTGCAAAAAGAAATAGGAAAAAATCGGTTTCAAAACTGAACCGAATCGTCTAAACCAAAATTGACTGGTTCGGTTTTGAAATCGAAACCAATAATATTTCGGTTTTCTCAGTTTGTAACTCTTCAGAACGAAGGGTTTGGATCGAACCGTGCAGACCCCTAATCACAAGTTTCTCTTCCTGGTTGAAACATACTATTCATCAAAGGTGTAACAAGCCTTTCTTCACCTAAGAAGCATCCTTCTTGTTTTGATTCTGATGGGGACTTGGATGTTAGTATGAGTAGTGTGGAATTCGTTTTTCCTAATTCAGTACCAAAGTTGGTTGATCTGTTTGAAGGTGATTCTTTTGTAGAAGTTTTTAAAATTCTATACAAAGATAATGAATAAGGTGTCGATGGTCTTAGGGGAGTAGTTTCTCCGATGGTTTCTACTCAAGTCCCAGCCAAGCTTTCTTCTCTTATTGAGATTTTCGGATTACAAATGTGGGGAATTCCTAATTTTTCTCCTGTTGTTAAAGCTCTTTAGTATTATTCTTATTGGCTCAGTTTTGTATCTCTTTGGGGTTAGTCTCTAAAAGTTGGGCACTTGTCAGATATCTTTGGTGATGTTTTTTCATTTGTGCCTGGTTTTTTTCGAAGATTCTTCTTTTGATCGTTTCCTCTCTGTTTGTTATTTCAGTCGGTTACAGAGTAGTTTTTGTTTTTACTTTCCTCTGTTTTGTTTTCTTTGTTGGGCAGCGTTTGTGTTGGTTATTATCTCAGATTTTTTGTTAGTGGTTTTCATTGTTTTGGTTTCGTGCTTTTGTAGCTTGGTGGTCCCATTTTCTTTTCTGAGTTTGGATTTTTCTTTTTCAATTGTAGCTACCCGTCTTTTGTCCTTGTTGGTTTTCTTTTTTAGTTGCTCCTCTTCTTCAGTTCATTTCTTCTTCTCTCCTTTGTGGAGATTGTAATTCTGAGCATTAGCCTCTTTTCATTTTTTCAATGAAAATCTTTGTTTCTTGTTATATATATATATATATATATATATATATATATATATATATATATAATTGAAAGACCAAACTACATGTTTCAAGCCCCATTTGATAATAAATTTTTTTAATTTTTAAAATTTTCACTTCTTAAAAATATTTTTGAATTCTGGGAGCTTTTCTCTTTAGGATTCCTTTCTCCCTCTCTGGTGCATTTTGTCCTTGGATCGTTTTAATGTAATTGGTGCCTTTTGATACTGTTTTATTGTTGGCCAATATGGTTTGTATCTGTAGCGTTGCAAATAAGTCCCTTTTTTGTTAGATTTGATCATGAGAATTACATTTTGAAGAGACCAAATGGAAATTTTGGGCTGTAGCGTAGAGCAGTTTTTGGTGCTTGGTGGGAGTGGTTTTTGTTGGTTTGGCTCGTTGGCTTTTCAAGTTGTTTTTCTCAAAGTTGCTGGATCTTTTCTTGGAGTTCTTAAGAGTTATATTTTTCTTTTAGCTCTTGTAATTTTTGGACATCTTTTCTTTATTTGTTTGCAAAGATACATCCTTGAAAATTTTCCTATGTTTTCATCTATCATTGGAAAGTTTGTTTCTTGTTACAAAAATGGAAGAGAAAAAAGGGGCGGTCCTTTTTTATCAAGCTACAATGGAATACTGTTCCATGGCTAGAGAATTCCTTTGCAGACCTTAGGGAAGAGTCCTCTCATTGTCAAGTGCTTTGGGAGGAGTCCTTTCAATGTCAAGTTCATCAAGCTAACGAAAGGGGAAAAAGGTTCATTCTCGCTTCAAAAAAATGGTCCAATCAATTTGGTTGGTTGGTAAAACTTGCTTTTCAATCTTGGTTTGCAAAAATTCATTGCTCATGGGAAAGAGGTTCAATCTTGGTCTGCATAAATTCTCTTCCACCCCTTCCCCTAGTTTTCCTGCCATCAACTCTGGCGTGATCCTTCGTCTACTTCGCCGACATCTATCATCTCATTGTATTTATCCCAAAAATCCTTGAGCATAATCTGCAGGGATCACAATACTCTTCCTTCCCCAAACATTAACCAAACAACACAGGAAAATGCATCATCTCCATAATATGATTTTCACACCACATAAAATGAGACAAATGAAGAGGCATCAGAAAACAACACCTTGGGTATATAAATACTAGACTATATCAGCAAGAAAGTTCAAAAGGAATTTGTATGGTTTCATTCCTGCAAATTGCAAAAATTGAAGTTACAGATAGGAAGCTTGGAAAATTTTCCCTTCAATTTGATAATGTTGATGGTCTGGTTCCTCTTAATATTGTTCATGGAGACTTATTTTTAAAAAACTTTTCAAATCCCCCGATCACCTTTGTTTAAAGCAAGTCATGAAGGATGAAGTAGTGTTCGATTTTTTTTAAAAGGATGCTTCGATTCCAGCAGAAGACAAATTAATTAAATCCAATCCGTATGAGACATTAATTATTCCAAGGGATGTCGATCAGTTGCATTCAAATGTCCCTTTACTTCTTCCTTAAGGAGATTCAATTTATTAATTCTCATGCTTGCAATAAGCTTTCAGACTGGGAAGTTATTGATCAAGACTTGCATGACCAACATTATTTAATGAAGAAAGATGGTAACTTTCAGGTATCCAATACAAAGGAAATTGAAGGCTTCCATTTTACCCGAGCTAAATCTATAATAGAAGATGAAAAGGTGTCATTAGAAGTTGAGGATGACTTATTACCAGAAAATTCTCTACGTCAGTTTGTGAACACTACAAACAGACTTCGAAATAAAGTAATTAATATGCCAGAGGACACAACTTTAAATGCGCCTAGTCTACATCCCAAGGATGGTGTATTTGATTCGAATAGACTTCCTTTGGTATCTGAACCACCAGCCTTGGATGTGACAACAGATTTAATTGCCCAACCAAGTAAGAATTCATAAATTGTTACAGGGAGTGAGGTTTTTAATGCTGATAATTTGCATGAAGACGTGATTTCAACAGATATGAGGGGATTTTCTAAGAAATCTGGAACGTGATAGGATGTAGTGAACTCAATTGTTTTAACAAGAATTTCAACCGTCCGAAGGAGCTTGAATACGGATGACAAAGTGCAAAGAAAGTTTAGAAGTTGGATATTATCTCCTTCGGGCTGTAGGCTTTGCCTTAGGGAGAATGAGAATATAGATCATATTTTTTTGCATTGTGAGTTTGCCAACAAAGCGTGGAACTTCATTGGTGGTCTGCTGGGATTGTCTTTCTGTTTGTCGAGGAGAGTGGATGAGTGGTTAGATGAAGGGTTGATTGCGTGGAATCTGAAAAAGAAGGCTAAGGTGATTGGTGGATGTGCGTTTAGAGCGACCATGTGACTTTTGTGGAAGGAGAGAAACGCTAAAACTTTGGAGTGGGCTTTTGGTGAGGAGCATTGATTTGAGGGGGGGAAAGCGTGGTTGACAAGCCACTTCGAGGAGGCGATTGGACTGGAGTGCTTTCATCAAATGATGCATGTGGGCTGAGTCATTCCCACCCCAAGTGGTGGCCTGATTCGGCCGTGTCGGGAAGAGATTCACATAGAGACTCTTACGTTACGAGAATCTCTTTCTATGTTAGCGGGAGGGGGCGAGTCAGGGGGTTTGCTTGCTGGCTCTCAGGGCTTCTCGTCGGTCCTACCAGGGGACCCCCCCCCCACCACAAGGTACATCTTGCGCCTATGGGCCGTTATAACTGTCCAAGAAGACACTCGAAATTGGAAGGATAAACAAACCCACCCGGGGGACTGTCGAGCTACAAGTCCCACGACACAGGAGCGGGATTCCCTAAAAAGCCAAGGTCGCCATCTTACTGCAACAAAGCAAGCTTAGGAATGAATCTAATGGGCTCCGTTGGAGAAGAAAGAAGGTCCCGGTCAAATTTATAATGAAGCGAAGGTCCCCCTTACTCCCTATTCTCTCTTAAAGCTTTATAAAGCTCGGCGAGAAAGGAAAGGGTCGGTTAAGAACTATTGATTGTAAACCATAGCAGTTACAGTCACTCAATGGAAATGTTCGTATAAGTCGTCTTCTTTTGAATTTTTTTGTAACACTGTACAAAATACAGCTTCTTGGTGGATTTCTTCACACTCACACAGTTTTTTTGTAATTATAGCTTGCTTATGATTATTAACGATTGGCAAGCCCTTTTGAGATAGTTTTTGGGAGGGGCGACCTCCACCCGGCCCTTAGGTTGTTTAGCCTTTTGTGAGTAATATATATCCTTTGATGTCTCTTATCTAAAAAAAAAAACCTTGTATGTCAAAGCAAACAAGGATGGAATATTCTCTTCGATTTCTGATCATGATATCTCAATGAACTTAAATACTTCGCTCCCATTAAGCATTAAAGAGATAAACGGGAAATAAACTTACATAAACTTACTCGAATTCTATTCAAGGAAAAGAAATTTTGACCCTTCGACTTCCAAGATTCCAGATGCTTCTTTTAATTCAAATATTATTGAAGAATCTTGAGCAAGACTTTTGGCTTCTATTGTGAATCAACCCATCGGTAAAAATGACATATCAAGGTACTCACCTCAGTCTTTGATCATAAATCAATGTAAGATTGGCTCTGATGGTACTCAATTTACGAAAGTTTTATTCTCCGCATCTAAAGTCATCTCTCCATCCAAAAAGCCATGTTCCTATAGTATTGATAGTAGCTCTGATGATGAATATGATGTTAGTTTAAGTAATGTGGATTTCGTAATCATTCTAATTGAATCCTTTGCTACAGATTTTGACTTTTTAATTCAAGCTCCAGATAAGTCTGAACCTTTGCACATTAAAGAATCAGTAACAATTCAGAATGATAGTCATGTTACCACAACAATTCCACCTCCTCAGTTGGGTAATTTCTGTTCTTTAATCAAGGCTAGTGGGCTCCAATTTTGGGAAATTATTCCTTCAATCCCTAAGGGGGTTAGTTAGAAGAATTAAAGATAATTTTGTGACATCCCTTGTTTTTCGAAGAAAATCATATCTTGAAATACAAGAGGGTTGGGAGATAGTTCTCTGAGAGTTAGGTTGAAGAATATTCTGCAGCATATTTGCCCCGATTTTGTACTTATACAAGAAACCAAGAAGACCTCCTTTGATAGGAGATTTATTAAATAACTTTGGAGTTCAAAAGATGTTAATTGGGTTCAATATTGAATCTCTTGGCCGATCGGGTGGATTATTAATCTTGTGGGATGAGAGTAAGATGAAAGTTTTAGAGGTGTTAAAAGATGAAAAGTTTGGCTCCTTATTAGATATAACGTTTTTCTTTGGACATCGGTGACGCGTTTATTTTGTGATGATTCCATCAGTCTCATTATTTTGGATTGGAGCCCTTTTATCTAATAGGGTCTCTCTTTTTGTGGGCTGTTTTTTTTTTTTTTTTTTTCTTTGCTTCTGTCATTTTTTTCCCAATGAAAATTTGGTCTTTCATTTAAAAAAAAATGTAGTTACTCTTGATGAAAGTATCAATCTCAGCAAAATAAAGTTGGTTGAATTTTAAACATATATGGTCCAAATAACTATAGAGAAAGGAAGCATTTTTGGAGTGAGTTGTGATCTCTCGACTCTTATTATGATGAACCATGGTGTGAAGGTGGAGATATTAATATAATTAGATGGGGTCACGAGAGATTCTTAGTTGGAAGACAGACTAAAGGTATGAGGCTTTTTTTTTTTTTTTTTTTTTTTTTGAGAAAAGACCAACTTTCATTGAGAAAAAATGAAAGAATACAAGGGCATACAAAAAGCTAGCCCACAAAAGGGAACCCTACTAAAGGAATGAGCTCCAATCAAGGATAATAACACCTATCGAATAGTTACAAAAGGTCTTCGAAATTGAAGCCCAAAGAGAAACCTAAAATCTAATGAGGGCCCACACATCAGATGGGGACCTCTCCACCTCTCTAAAAACCCTATTGTTTCTCTCTCCCCACAAGCCCCGCAAAACAGCGCACACCCCGACAAGCCATAACTCTCTCTCCTTAACTCTGAATGACAGATGAAGGAGGAACTCCTCAATCATCTCTTTGAGACCTCTGAAGCTCTTACCCTGCAACCCAAAAGCATCAAAGAACAAACTCCAAACTGAGCGGGCAAAGGCACAACTCCACAAAATATGATCCAGGTCTTCCATCGCCCTCCGGCACAAGATACAACAGAACGCCGCCACCAACGAAGGCATCTTTCTCGTGAGAATGTCGAAAGTATTAACTCTTCCATGGATAACTTGTCAGGTAAAGAATCTAACCTTCTTAGGAAATTTTACCCTCCATAGAACTGAAAAGATAGACTCCCTACAGGGGGAGGGATTGAGAATCCACTGAAAGAAAGAACTGCACAAAAAGCCCTTAGTAGGGCTAAGACTCCAACTGCGAAACGAAAATCTTTCCTTCCCTCCCTAAACTGAAGCTCCCCTATCAAAGACAAGAGAGCTGCAACCTCCACTGCTTAGAAGGAGAACTCTCAAAGACGGTAATAACATCAGAGATCACCCTATTTTTCATAGAGGACAAACGATAGAGATTAGGAAACTTGGAGCAGAGGGAACAATCCCCCACCCACTTATCCTCCCAAAAATAGGTATCCCTCCCATCACCCACCACCCAATGAATCAGACTCGAAAAATCTGGGAGCTTGAAGACAATATCTTTCCATGGATTTCTGGACATGCCTTTAAACCCCCCGACAGCCACTCATAGGGATGATAGCCATACAAACTAACGATAATCCGATGTCAAAACGAGGTCGACTCGAGCGGGAACTGTCGTAGCCATTTAGCTAGCAACGCTCTATTTCTCAAATTCAGATTCCCTAATTCTAGACTGCCAAGACCCACAAGTTCACTATCTCCCAGCTGACTAAGTGGTTACCTCCCCCCATCCACTCCCTCCCATAACTCAACTAAGTGGTTTTTGTTGGGGTTTCATAGGAAGAGTTTTCGTTTTTGTTTTTTGTTTCAGTTTTGGGTGATTTTGTTGCTTCATTTGGAGTTTTTGGCCAAGGAAATCATCTTCTCTATCTGTTTTGCAAGGGAAGCTGCTTTCTTTCGTAGTCATTTGTTCCTTCTAGTGGTCCTTGTTTCAATTCTTGGCTGGGTCTTCTCTGTGTTGAGTTAAGATTTGCTCAAAATCCGCTAGTTTCTTCATTCTCCTTTTGAAGTTTGCTTTGGGTTCAATTTCTTTTGCTTGGCAGGAGGTGGAATCTCTGCTTTCTTTTCTTTGGTCTGTCTTGGTTTGAGTTCCCTCCAGCTTTCTATGGTTTTGTTTATGCGATTTTTGTTTTCATATTGGTTTTCTTACAAGTTCTTCTCTTGTGGTTTTAGAGGATGCTTTGATTCTTTATGTGGGTTGTTTTTTATTTTTTTTTTTTTCTTTCTTCCGTGCGGCGTTTGTATCCTTTGAGCATTAGTCTCTTTTCATTTTATCAATGAAAAGTTTCGTTTCTTGTCAAAAAAAAAAAAGAAAAAAAGGTCCAAATTCCTATACTAAAAGGTAGACGGACTCTCTTCATTTCTCTCTTTCATTGAAGGAAACAACTGGTGCTGTTCATTGTGTTAATCATTTTATTTGAAGTGAGTAGTATTTGCTAGCTTGGTTCTTGCTGGAGGATCACCATTAAACTCTAATTTTCCTGGGAATCTTATGGTGCAGGTAATGCTTAAAGAAAGTGCTTCACCAGTAGACATGCTCAAGGCATTGTTTCATGTTAATTATTTGCACTGGCTAGAGAGAAATGCCGGAATAATAGCAAGAAGTGCCTCTAATGACTGCAGACCGGGGGGAAGGTTGCAAATATCTCTGGAGTATGTGCAGAGGGAATTCAACCATGTAAAATATGATGGGGAATTGGCGGGTTGGTTGACTGATGGCCTAATTGCAAGGCCCTTAACTACTAGGATTTGTCAATTTCATGTAGCCACGTAGATTTCTTCATGATGAGATCCAGGAACGAGTTACTACCAAGCTAGCGAGGACATTTCTAATACTACTGGATTTTGAGTAGTTCTTAAAGTAAATAATGGTGTGCAAAGAAATTGGTATGAAATTCATCACTCTAAACAAGAAAATAACATGCATGTCACAATAATATGATTTCCTTGAGGAAATCATCTTTTCTAAGGTTAACTTAGGAGCCATGCAACAAGCAAATAAC

mRNA sequence

ATGGCTATATGTGCTGGATTGATGCCTGTAGTTGTTCATCTTCCAATCCGATTAACTGACTTTTGTAGTTTTCTTAAGGAGCCAAAAATGGGTTTACTATCTACTGAAGCAAAGGAATCAGCAGCTAATATTGAAAAGCGACTTCAATTGGGATCTAAGCTCAGTGATGTGGCGAGCTGTGAAGAGGACGTTCTTGAACTCTTGAGTCTGTATAAAATTGAAAATTACATTCTGTCAGAGCACAGGGGAAGATATTGTAAGCATCCTTCTTGTTTTGATTCTGATGGGGACTTGGATGTTAGTATGAGTAGTGTGGAATTCGTTTTTCCTAATTCAGTACCAAAGTTGGTTGATCTGTTTGAAGCGTTTGTGTTGACCTTAGGGAAGAGTCCTCTCATTGTCAAGTGCTTTGGGAGGAGTCCTTTCAATGTCAAGTTCATCAAGCTAACGAAAGGGGAAAAAGACTGGGAAGTTATTGATCAAGACTTGCATGACCAACATTATTTAATGAAGAAAGATGGTAACTTTCAGGTATCCAATACAAAGGAAATTGAAGGCTTCCATTTTACCCGAGCTAAATCTATAATAGAAGATGAAAAGGTGTCATTAGAAGTTGAGGATGACTTATTACCAGAAAATTCTCTACGTCAGTTTGTGAACACTACAAACAGACTTCGAAATAAAGTAATTAATATGCCAGAGGACACAACTTTAAATGCGCCTAGTCTACATCCCAAGGATGGTGTATTTGATTCGAATAGACTTCCTTTGGTATCTGAACCACCAGCCTTGGATGTGACAACAGATTTAATTGCCCAACCAATGAACTCAATTGTTTTAACAAGAATTTCAACCGTCCGAAGGAGCTTGAATACGGATGACAAAGTGCAAAGAAAGTTTAGAAGTTGGATATTATCTCCTTCGGGCTGTAGGCTTTGCCTTAGGGAGAATGAGAATATAGATCATATTTTTTTGCATTGTGAGTTTGCCAACAAAGCGTGGAACTTCATTGGTGGTCTGCTGGGATTGTCTTTCTGTTTGTCGAGGAGAGTGGATGAGTGGTTAGATGAAGGGTTGATTGCGTGGAATCTGAAAAAGAAGGCTAAGCCACTTCGAGGAGGCGATTGGACTGGAGTGCTTTCATCAAATGATGCATGTGGGCTGAGTCATTCCCACCCCAAGTGGTGGCCTGATTCGGCCGTGTCGGGAAGAGATTCACATAGAGACTCTTACGTTACGAGAATCTCTTTCTATGTTAGCGGGAGGGGGCGAGTCAGGGGGTTTGCTTGCTGGCTCTCAGGGCTTCTCGTCGGTCCTACCAGGGGACCCCCCCCCCACCACAAGATTGGCTCTGATGGTACTCAATTTACGAAAGTTTTATTCTCCGCATCTAAAGTCATCTCTCCATCCAAAAAGCCATGTTCCTATAGTATTGATAGTAGCTCTGATGATGAATATGATGTTAGTTTAAGTAATGTGGATTTCGTAATCATTCTAATTGAATCCTTTGCTACAGATTTTGACTTTTTAATTCAAGCTCCAGATAAGTCTGAACCTTTGCACATTAAAGAATCAGTAACAATTCAGAATGATAGTCATGTTACCACAACAATTCCACCTCCTCAGTTGGGTAATTTCTGTTCTTTAATCAAGGCTAGTGGGCTCCAATTTTGGGAAATTATTCCTTCAATCCCTAAGGGGGTCTTCCATCGCCCTCCGGCACAAGATACAACAGAACGCCGCCACCAACGAAGGCATCTTTCTCGTGAGAATGTCGAAAGTATTAACTCTTCCATGGATAACTTGTCAGGAGGTGGAATCTCTGCTTTCTTTTCTTTGGTAATGCTTAAAGAAAGTGCTTCACCAGTAGACATGCTCAAGGCATTGTTTCATGTTAATTATTTGCACTGGCTAGAGAGAAATGCCGGAATAATAGCAAGAAGTGCCTCTAATGACTGCAGACCGGGGGGAAGGTTGCAAATATCTCTGGAGTATGTGCAGAGGGAATTCAACCATGTAAAATATGATGGGGAATTGGCGGGTTGGTTGACTGATGGCCTAATTGCAAGGCCCTTAACTACTAGGATTTGTCAATTTCATGTAGCCACGTAG

Coding sequence (CDS)

ATGGCTATATGTGCTGGATTGATGCCTGTAGTTGTTCATCTTCCAATCCGATTAACTGACTTTTGTAGTTTTCTTAAGGAGCCAAAAATGGGTTTACTATCTACTGAAGCAAAGGAATCAGCAGCTAATATTGAAAAGCGACTTCAATTGGGATCTAAGCTCAGTGATGTGGCGAGCTGTGAAGAGGACGTTCTTGAACTCTTGAGTCTGTATAAAATTGAAAATTACATTCTGTCAGAGCACAGGGGAAGATATTGTAAGCATCCTTCTTGTTTTGATTCTGATGGGGACTTGGATGTTAGTATGAGTAGTGTGGAATTCGTTTTTCCTAATTCAGTACCAAAGTTGGTTGATCTGTTTGAAGCGTTTGTGTTGACCTTAGGGAAGAGTCCTCTCATTGTCAAGTGCTTTGGGAGGAGTCCTTTCAATGTCAAGTTCATCAAGCTAACGAAAGGGGAAAAAGACTGGGAAGTTATTGATCAAGACTTGCATGACCAACATTATTTAATGAAGAAAGATGGTAACTTTCAGGTATCCAATACAAAGGAAATTGAAGGCTTCCATTTTACCCGAGCTAAATCTATAATAGAAGATGAAAAGGTGTCATTAGAAGTTGAGGATGACTTATTACCAGAAAATTCTCTACGTCAGTTTGTGAACACTACAAACAGACTTCGAAATAAAGTAATTAATATGCCAGAGGACACAACTTTAAATGCGCCTAGTCTACATCCCAAGGATGGTGTATTTGATTCGAATAGACTTCCTTTGGTATCTGAACCACCAGCCTTGGATGTGACAACAGATTTAATTGCCCAACCAATGAACTCAATTGTTTTAACAAGAATTTCAACCGTCCGAAGGAGCTTGAATACGGATGACAAAGTGCAAAGAAAGTTTAGAAGTTGGATATTATCTCCTTCGGGCTGTAGGCTTTGCCTTAGGGAGAATGAGAATATAGATCATATTTTTTTGCATTGTGAGTTTGCCAACAAAGCGTGGAACTTCATTGGTGGTCTGCTGGGATTGTCTTTCTGTTTGTCGAGGAGAGTGGATGAGTGGTTAGATGAAGGGTTGATTGCGTGGAATCTGAAAAAGAAGGCTAAGCCACTTCGAGGAGGCGATTGGACTGGAGTGCTTTCATCAAATGATGCATGTGGGCTGAGTCATTCCCACCCCAAGTGGTGGCCTGATTCGGCCGTGTCGGGAAGAGATTCACATAGAGACTCTTACGTTACGAGAATCTCTTTCTATGTTAGCGGGAGGGGGCGAGTCAGGGGGTTTGCTTGCTGGCTCTCAGGGCTTCTCGTCGGTCCTACCAGGGGACCCCCCCCCCACCACAAGATTGGCTCTGATGGTACTCAATTTACGAAAGTTTTATTCTCCGCATCTAAAGTCATCTCTCCATCCAAAAAGCCATGTTCCTATAGTATTGATAGTAGCTCTGATGATGAATATGATGTTAGTTTAAGTAATGTGGATTTCGTAATCATTCTAATTGAATCCTTTGCTACAGATTTTGACTTTTTAATTCAAGCTCCAGATAAGTCTGAACCTTTGCACATTAAAGAATCAGTAACAATTCAGAATGATAGTCATGTTACCACAACAATTCCACCTCCTCAGTTGGGTAATTTCTGTTCTTTAATCAAGGCTAGTGGGCTCCAATTTTGGGAAATTATTCCTTCAATCCCTAAGGGGGTCTTCCATCGCCCTCCGGCACAAGATACAACAGAACGCCGCCACCAACGAAGGCATCTTTCTCGTGAGAATGTCGAAAGTATTAACTCTTCCATGGATAACTTGTCAGGAGGTGGAATCTCTGCTTTCTTTTCTTTGGTAATGCTTAAAGAAAGTGCTTCACCAGTAGACATGCTCAAGGCATTGTTTCATGTTAATTATTTGCACTGGCTAGAGAGAAATGCCGGAATAATAGCAAGAAGTGCCTCTAATGACTGCAGACCGGGGGGAAGGTTGCAAATATCTCTGGAGTATGTGCAGAGGGAATTCAACCATGTAAAATATGATGGGGAATTGGCGGGTTGGTTGACTGATGGCCTAATTGCAAGGCCCTTAACTACTAGGATTTGTCAATTTCATGTAGCCACGTAG

Protein sequence

MAICAGLMPVVVHLPIRLTDFCSFLKEPKMGLLSTEAKESAANIEKRLQLGSKLSDVASCEEDVLELLSLYKIENYILSEHRGRYCKHPSCFDSDGDLDVSMSSVEFVFPNSVPKLVDLFEAFVLTLGKSPLIVKCFGRSPFNVKFIKLTKGEKDWEVIDQDLHDQHYLMKKDGNFQVSNTKEIEGFHFTRAKSIIEDEKVSLEVEDDLLPENSLRQFVNTTNRLRNKVINMPEDTTLNAPSLHPKDGVFDSNRLPLVSEPPALDVTTDLIAQPMNSIVLTRISTVRRSLNTDDKVQRKFRSWILSPSGCRLCLRENENIDHIFLHCEFANKAWNFIGGLLGLSFCLSRRVDEWLDEGLIAWNLKKKAKPLRGGDWTGVLSSNDACGLSHSHPKWWPDSAVSGRDSHRDSYVTRISFYVSGRGRVRGFACWLSGLLVGPTRGPPPHHKIGSDGTQFTKVLFSASKVISPSKKPCSYSIDSSSDDEYDVSLSNVDFVIILIESFATDFDFLIQAPDKSEPLHIKESVTIQNDSHVTTTIPPPQLGNFCSLIKASGLQFWEIIPSIPKGVFHRPPAQDTTERRHQRRHLSRENVESINSSMDNLSGGGISAFFSLVMLKESASPVDMLKALFHVNYLHWLERNAGIIARSASNDCRPGGRLQISLEYVQREFNHVKYDGELAGWLTDGLIARPLTTRICQFHVAT
Homology
[Close]
BLAST of Spg001670.1 vs. NCBI nr
Match: XP_038881395.1 (protein root UVB sensitive 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 180.6 bits (457), Expect = 4.6e-41
Identity = 82/90 (91.11%), Postives = 87/90 (96.67%), Query Frame = 0 

Query: 614 VMLKESASPVDMLKALFHVNYLHWLERNAGIIARSASNDCRPGGRLQISLEYVQREFNHV 673
           VMLKESASPVDMLKA+FHVNYLHWLERNAGI ARSASNDC+PGGRLQ+SLEYV+REFNHV
Sbjct: 522 VMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCKPGGRLQMSLEYVEREFNHV 581

Query: 674 KYDGELAGWLTDGLIARPLTTRICQFHVAT 704
           KYDGELAGWLTDGLIARPLT RIC+ HVAT
Sbjct: 582 KYDGELAGWLTDGLIARPLTNRICECHVAT 611

[Close]
BLAST of Spg001670.1 vs. NCBI nr
Match: XP_038881395.1 (protein root UVB sensitive 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 107.1 bits (266), Expect = 6.4e-19
Identity = 58/80 (72.50%), Postives = 63/80 (78.75%), Query Frame = 0 

Query: 7   LMPVVVHLPIRLTDFCSFLKEPKMGLLSTEAKESAANIEKRLQLGSKLSDVASCEEDVLE 66
           L P V  L  RL        EPK+G+LS EAKESAANIEKRLQLGSKLSDVA+CEEDVLE
Sbjct: 447 LFPAVPFLNTRLA-----CDEPKLGILSAEAKESAANIEKRLQLGSKLSDVATCEEDVLE 506

Query: 67  LLSLYKIENYILSEHRGRYC 87
           LLSL+  ENYILSEHRG+YC
Sbjct: 507 LLSLFNKENYILSEHRGKYC 521


HSP 2 Score: 177.9 bits (450), Expect = 3.0e-40
Identity = 81/88 (92.05%), Postives = 85/88 (96.59%), Query Frame = 0 

Query: 614 VMLKESASPVDMLKALFHVNYLHWLERNAGIIARSASNDCRPGGRLQISLEYVQREFNHV 673
           VMLKESASPVDMLKA+FHVNYLHWLERNAGI ARSASNDCRPGGRLQ+SLEYV+REF HV
Sbjct: 523 VMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVEREFKHV 582

Query: 674 KYDGELAGWLTDGLIARPLTTRICQFHV 702
           KYDGELAGWLTDGLIARPLTTRIC+ HV
Sbjct: 583 KYDGELAGWLTDGLIARPLTTRICECHV 610

[Close]
BLAST of Spg001670.1 vs. NCBI nr
Match: XP_008449956.1 (PREDICTED: protein root UVB sensitive 1, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 1.6e-17
Identity = 50/60 (83.33%), Postives = 56/60 (93.33%), Query Frame = 0 

Query: 27  EPKMGLLSTEAKESAANIEKRLQLGSKLSDVASCEEDVLELLSLYKIENYILSEHRGRYC 86
           EPK+GLLS EAKESAANI++RLQLGSKLSDVA+CE DVLELLSL+  ENYILSEHRG+YC
Sbjct: 463 EPKLGLLSAEAKESAANIDQRLQLGSKLSDVATCEADVLELLSLFNKENYILSEHRGKYC 522


HSP 2 Score: 177.9 bits (450), Expect = 3.0e-40
Identity = 81/88 (92.05%), Postives = 85/88 (96.59%), Query Frame = 0 

Query: 614 VMLKESASPVDMLKALFHVNYLHWLERNAGIIARSASNDCRPGGRLQISLEYVQREFNHV 673
           VMLKESASPVDMLKA+FHVNYLHWLERNAGI ARSASNDCRPGGRLQ+SLEYV+REF HV
Sbjct: 418 VMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVEREFKHV 477

Query: 674 KYDGELAGWLTDGLIARPLTTRICQFHV 702
           KYDGELAGWLTDGLIARPLTTRIC+ HV
Sbjct: 478 KYDGELAGWLTDGLIARPLTTRICECHV 505

[Close]
BLAST of Spg001670.1 vs. NCBI nr
Match: XP_016900848.1 (PREDICTED: protein root UVB sensitive 1, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 2.4e-18
Identity = 51/64 (79.69%), Postives = 59/64 (92.19%), Query Frame = 0 

Query: 23  SFLKEPKMGLLSTEAKESAANIEKRLQLGSKLSDVASCEEDVLELLSLYKIENYILSEHR 82
           +F +EPK+GLLS EAKESAANI++RLQLGSKLSDVA+CE DVLELLSL+  ENYILSEHR
Sbjct: 354 NFAEEPKLGLLSAEAKESAANIDQRLQLGSKLSDVATCEADVLELLSLFNKENYILSEHR 413

Query: 83  GRYC 87
           G+YC
Sbjct: 414 GKYC 417


HSP 2 Score: 176.8 bits (447), Expect = 6.6e-40
Identity = 83/90 (92.22%), Postives = 84/90 (93.33%), Query Frame = 0 

Query: 614 VMLKESASPVDMLKALFHVNYLHWLERNAGIIARSASNDCRPGGRLQISLEYVQREFNHV 673
           VMLKESASPVDMLKALFHVNYLHWLERNAGIIARSASNDCRPGGRLQISLEYVQREFNHV
Sbjct: 503 VMLKESASPVDMLKALFHVNYLHWLERNAGIIARSASNDCRPGGRLQISLEYVQREFNHV 562

Query: 674 KYDGELAGWLTDGLIARPLTTRICQFHVAT 704
           KYDGELAGWLTDGLIARPL  RI   H+ T
Sbjct: 563 KYDGELAGWLTDGLIARPLANRIRPCHLVT 592

[Close]
BLAST of Spg001670.1 vs. NCBI nr
Match: XP_022148171.1 (protein root UVB sensitive 1, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 105.5 bits (262), Expect = 1.9e-18
Identity = 60/80 (75.00%), Postives = 61/80 (76.25%), Query Frame = 0 

Query: 7   LMPVVVHLPIRLTDFCSFLKEPKMGLLSTEAKESAANIEKRLQLGSKLSDVASCEEDVLE 66
           L P V  L  RL        EPK+ LLSTEAKESAANIEKRLQLGSKLSDV SCEEDVLE
Sbjct: 428 LFPAVPFLNTRLA-----RGEPKLRLLSTEAKESAANIEKRLQLGSKLSDVVSCEEDVLE 487

Query: 67  LLSLYKIENYILSEHRGRYC 87
           L SLYK ENYILSE RGRYC
Sbjct: 488 LFSLYKNENYILSEQRGRYC 502


HSP 2 Score: 175.6 bits (444), Expect = 1.5e-39
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 0 

Query: 614 VMLKESASPVDMLKALFHVNYLHWLERNAGIIARSASNDCRPGGRLQISLEYVQREFNHV 673
           VMLKESASPVDMLKA+FHVNYLHWLERNAGI ARSASNDCRPGGRLQ+SLEYV+REF HV
Sbjct: 524 VMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVEREFKHV 583

Query: 674 KYDGELAGWLTDGLIARPLTTRICQFHV 702
           KYDGELAGW TDGLIARPLTTRIC+ HV
Sbjct: 584 KYDGELAGWSTDGLIARPLTTRICECHV 611

[Close]
BLAST of Spg001670.1 vs. ExPASy Swiss-Prot
Match: Q7X6P3 (Protein root UVB sensitive 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RUS1 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.3e-27
Identity = 56/83 (67.47%), Postives = 68/83 (81.93%), Query Frame = 0 

Query: 614 VMLKESASPVDMLKALFHVNYLHWLERNAGIIARSASNDCRPGGRLQISLEYVQREFNHV 673
           VMLKES++P DML++LF VNYL+WLE+NAGI   S  +DC+PGGRL ISL+YV+REF H 
Sbjct: 510 VMLKESSTPQDMLRSLFQVNYLYWLEKNAGIEPASTYSDCKPGGRLHISLDYVRREFEHA 569

Query: 674 KYDGELAGWLTDGLIARPLTTRI 697
           K D E  GW+T+GLIARPL TRI
Sbjct: 570 KEDSESVGWVTEGLIARPLPTRI 592


HSP 2 Score: 70.1 bits (170), Expect = 1.1e-10
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 0 

Query: 32  LLSTEAKESAANIEKRLQLGSKLSDVASCEEDVLELLSLYKIENYILSEHRGRYCKHPSC 91
           +LS+EAK +AA+IE+RLQLGSKLSDV   +E+ + L  LY+ E YIL+EH+GR+C     
Sbjct: 455 VLSSEAKAAAADIEERLQLGSKLSDVIHNKEEAIALFDLYRNEGYILTEHKGRFCVMLKE 514

Query: 92  FDSDGDLDVSMSSVEFVF 110
             +  D+  S+  V +++
Sbjct: 515 SSTPQDMLRSLFQVNYLY 532

[Close]
BLAST of Spg001670.1 vs. ExPASy TrEMBL
Match: A0A1S4DXZ7 (protein root UVB sensitive 1, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491686 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.4e-40
Identity = 81/88 (92.05%), Postives = 85/88 (96.59%), Query Frame = 0 

Query: 614 VMLKESASPVDMLKALFHVNYLHWLERNAGIIARSASNDCRPGGRLQISLEYVQREFNHV 673
           VMLKESASPVDMLKA+FHVNYLHWLERNAGI ARSASNDCRPGGRLQ+SLEYV+REF HV
Sbjct: 418 VMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVEREFKHV 477

Query: 674 KYDGELAGWLTDGLIARPLTTRICQFHV 702
           KYDGELAGWLTDGLIARPLTTRIC+ HV
Sbjct: 478 KYDGELAGWLTDGLIARPLTTRICECHV 505

[Close]
BLAST of Spg001670.1 vs. ExPASy TrEMBL
Match: A0A1S4DXZ7 (protein root UVB sensitive 1, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491686 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-18
Identity = 51/64 (79.69%), Postives = 59/64 (92.19%), Query Frame = 0 

Query: 23  SFLKEPKMGLLSTEAKESAANIEKRLQLGSKLSDVASCEEDVLELLSLYKIENYILSEHR 82
           +F +EPK+GLLS EAKESAANI++RLQLGSKLSDVA+CE DVLELLSL+  ENYILSEHR
Sbjct: 354 NFAEEPKLGLLSAEAKESAANIDQRLQLGSKLSDVATCEADVLELLSLFNKENYILSEHR 413

Query: 83  GRYC 87
           G+YC
Sbjct: 414 GKYC 417


HSP 2 Score: 177.9 bits (450), Expect = 1.4e-40
Identity = 81/88 (92.05%), Postives = 85/88 (96.59%), Query Frame = 0 

Query: 614 VMLKESASPVDMLKALFHVNYLHWLERNAGIIARSASNDCRPGGRLQISLEYVQREFNHV 673
           VMLKESASPVDMLKA+FHVNYLHWLERNAGI ARSASNDCRPGGRLQ+SLEYV+REF HV
Sbjct: 523 VMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVEREFKHV 582

Query: 674 KYDGELAGWLTDGLIARPLTTRICQFHV 702
           KYDGELAGWLTDGLIARPLTTRIC+ HV
Sbjct: 583 KYDGELAGWLTDGLIARPLTTRICECHV 610

[Close]
BLAST of Spg001670.1 vs. ExPASy TrEMBL
Match: A0A1S3BP56 (protein root UVB sensitive 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491686 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.6e-18
Identity = 50/60 (83.33%), Postives = 56/60 (93.33%), Query Frame = 0 

Query: 27  EPKMGLLSTEAKESAANIEKRLQLGSKLSDVASCEEDVLELLSLYKIENYILSEHRGRYC 86
           EPK+GLLS EAKESAANI++RLQLGSKLSDVA+CE DVLELLSL+  ENYILSEHRG+YC
Sbjct: 463 EPKLGLLSAEAKESAANIDQRLQLGSKLSDVATCEADVLELLSLFNKENYILSEHRGKYC 522


HSP 2 Score: 176.8 bits (447), Expect = 3.2e-40
Identity = 83/90 (92.22%), Postives = 84/90 (93.33%), Query Frame = 0 

Query: 614 VMLKESASPVDMLKALFHVNYLHWLERNAGIIARSASNDCRPGGRLQISLEYVQREFNHV 673
           VMLKESASPVDMLKALFHVNYLHWLERNAGIIARSASNDCRPGGRLQISLEYVQREFNHV
Sbjct: 503 VMLKESASPVDMLKALFHVNYLHWLERNAGIIARSASNDCRPGGRLQISLEYVQREFNHV 562

Query: 674 KYDGELAGWLTDGLIARPLTTRICQFHVAT 704
           KYDGELAGWLTDGLIARPL  RI   H+ T
Sbjct: 563 KYDGELAGWLTDGLIARPLANRIRPCHLVT 592

[Close]
BLAST of Spg001670.1 vs. ExPASy TrEMBL
Match: A0A6J1D4K5 (protein root UVB sensitive 1, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016908 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.0e-19
Identity = 60/80 (75.00%), Postives = 61/80 (76.25%), Query Frame = 0 

Query: 7   LMPVVVHLPIRLTDFCSFLKEPKMGLLSTEAKESAANIEKRLQLGSKLSDVASCEEDVLE 66
           L P V  L  RL        EPK+ LLSTEAKESAANIEKRLQLGSKLSDV SCEEDVLE
Sbjct: 428 LFPAVPFLNTRLA-----RGEPKLRLLSTEAKESAANIEKRLQLGSKLSDVVSCEEDVLE 487

Query: 67  LLSLYKIENYILSEHRGRYC 87
           L SLYK ENYILSE RGRYC
Sbjct: 488 LFSLYKNENYILSEQRGRYC 502


HSP 2 Score: 175.6 bits (444), Expect = 7.1e-40
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 0 

Query: 614 VMLKESASPVDMLKALFHVNYLHWLERNAGIIARSASNDCRPGGRLQISLEYVQREFNHV 673
           VMLKESASPVDMLKA+FHVNYLHWLERNAGI ARSASNDCRPGGRLQ+SLEYV+REF HV
Sbjct: 65  VMLKESASPVDMLKAVFHVNYLHWLERNAGITARSASNDCRPGGRLQMSLEYVEREFKHV 124

Query: 674 KYDGELAGWLTDGLIARPLTTRICQFHV 702
           KYDGELAGW TDGLIARPLTTRIC+ HV
Sbjct: 125 KYDGELAGWSTDGLIARPLTTRICECHV 152

[Close]
BLAST of Spg001670.1 vs. ExPASy TrEMBL
Match: A0A0A0L9N6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G254050 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.3e-19
Identity = 52/62 (83.87%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 25 LKEPKMGLLSTEAKESAANIEKRLQLGSKLSDVASCEEDVLELLSLYKIENYILSEHRGR 84
          ++EPK+ LLS EAKESAANIEKRLQLGSKLSDVA+CEEDVLELLSL+  ENYILSEHRG+
Sbjct: 3  IQEPKLSLLSAEAKESAANIEKRLQLGSKLSDVATCEEDVLELLSLFNKENYILSEHRGK 62

Query: 85 YC 87
          YC
Sbjct: 63 YC 64


HSP 2 Score: 162.2 bits (409), Expect = 8.1e-36
Identity = 75/84 (89.29%), Postives = 78/84 (92.86%), Query Frame = 0 

Query: 614 VMLKESASPVDMLKALFHVNYLHWLERNAGIIARSASNDCRPGGRLQISLEYVQREFNHV 673
           VMLKESA P DMLKALFHVNYLHWLERNAGI ARSA+NDC+PGGRLQISLEYV+REF HV
Sbjct: 522 VMLKESALPKDMLKALFHVNYLHWLERNAGIEARSAANDCKPGGRLQISLEYVEREFIHV 581

Query: 674 KYDGELAGWLTDGLIARPLTTRIC 698
           KYDGELAGWLTDGLIARPL  RIC
Sbjct: 582 KYDGELAGWLTDGLIARPLNNRIC 605

[Close]
BLAST of Spg001670.1 vs. TAIR 10
Match: AT3G45890.1 (Protein of unknown function, DUF647 )

HSP 1 Score: 126.3 bits (316), Expect = 9.5e-29
Identity = 56/83 (67.47%), Postives = 68/83 (81.93%), Query Frame = 0 

Query: 614 VMLKESASPVDMLKALFHVNYLHWLERNAGIIARSASNDCRPGGRLQISLEYVQREFNHV 673
           VMLKES++P DML++LF VNYL+WLE+NAGI   S  +DC+PGGRL ISL+YV+REF H 
Sbjct: 510 VMLKESSTPQDMLRSLFQVNYLYWLEKNAGIEPASTYSDCKPGGRLHISLDYVRREFEHA 569

Query: 674 KYDGELAGWLTDGLIARPLTTRI 697
           K D E  GW+T+GLIARPL TRI
Sbjct: 570 KEDSESVGWVTEGLIARPLPTRI 592


HSP 2 Score: 70.1 bits (170), Expect = 8.1e-12
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 0 

Query: 32  LLSTEAKESAANIEKRLQLGSKLSDVASCEEDVLELLSLYKIENYILSEHRGRYCKHPSC 91
           +LS+EAK +AA+IE+RLQLGSKLSDV   +E+ + L  LY+ E YIL+EH+GR+C     
Sbjct: 455 VLSSEAKAAAADIEERLQLGSKLSDVIHNKEEAIALFDLYRNEGYILTEHKGRFCVMLKE 514

Query: 92  FDSDGDLDVSMSSVEFVF 110
             +  D+  S+  V +++
Sbjct: 515 SSTPQDMLRSLFQVNYLY 532

The following BLAST results are available for this feature:
BLAST of Spg001670.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038881395.14.6e-4191.11protein root UVB sensitive 1, chloroplastic [Benincasa hispida][more]
XP_038881395.16.4e-1972.50protein root UVB sensitive 1, chloroplastic [Benincasa hispida][more]
XP_008449956.11.6e-1783.33PREDICTED: protein root UVB sensitive 1, chloroplastic isoform X1 [Cucumis melo][more]
XP_016900848.12.4e-1879.69PREDICTED: protein root UVB sensitive 1, chloroplastic isoform X2 [Cucumis melo][more]
XP_022148171.11.9e-1875.00protein root UVB sensitive 1, chloroplastic isoform X1 [Momordica charantia][more]

Pages

BLAST of Spg001670.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q7X6P31.3e-2767.47Protein root UVB sensitive 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R... [more]
BLAST of Spg001670.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4DXZ71.4e-4092.05protein root UVB sensitive 1, chloroplastic isoform X2 OS=Cucumis melo OX=3656 G... [more]
A0A1S4DXZ71.2e-1879.69protein root UVB sensitive 1, chloroplastic isoform X2 OS=Cucumis melo OX=3656 G... [more]
A0A1S3BP567.6e-1883.33protein root UVB sensitive 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 G... [more]
A0A6J1D4K59.0e-1975.00protein root UVB sensitive 1, chloroplastic isoform X1 OS=Momordica charantia OX... [more]
A0A0A0L9N65.3e-1983.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G254050 PE=3 SV=1[more]

Pages

BLAST of Spg001670.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G45890.19.5e-2967.47Protein of unknown function, DUF647 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 285..334
e-value: 2.4E-7
score: 31.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 569..590
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 573..590
NoneNo IPR availablePANTHERPTHR12770:SF22RUS1 FAMILY PROTEIN C16ORF58coord: 41..84
NoneNo IPR availablePANTHERPTHR12770:SF22RUS1 FAMILY PROTEIN C16ORF58coord: 601..697
IPR006968Root UVB sensitive familyPANTHERPTHR12770RUS1 FAMILY PROTEIN C16ORF58coord: 41..84
IPR006968Root UVB sensitive familyPANTHERPTHR12770RUS1 FAMILY PROTEIN C16ORF58coord: 601..697

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg001670Spg001670gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg001670.1-five_prime_utrSpg001670.1-five_prime_utr-scaffold10:131717..131726five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg001670.1-cdsSpg001670.1-cds-scaffold10:131727..131984CDS
Spg001670.1-cdsSpg001670.1-cds-scaffold10:133713..133818CDS
Spg001670.1-cdsSpg001670.1-cds-scaffold10:134219..134229CDS
Spg001670.1-cdsSpg001670.1-cds-scaffold10:135145..135232CDS
Spg001670.1-cdsSpg001670.1-cds-scaffold10:136018..136377CDS
Spg001670.1-cdsSpg001670.1-cds-scaffold10:136498..136781CDS
Spg001670.1-cdsSpg001670.1-cds-scaffold10:136907..137143CDS
Spg001670.1-cdsSpg001670.1-cds-scaffold10:138047..138403CDS
Spg001670.1-cdsSpg001670.1-cds-scaffold10:139608..139716CDS
Spg001670.1-cdsSpg001670.1-cds-scaffold10:140675..140703CDS
Spg001670.1-cdsSpg001670.1-cds-scaffold10:141133..141405CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg001670.1-three_prime_utrSpg001670.1-three_prime_utr-scaffold10:141406..141634three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg001670.1Spg001670.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007155 cell adhesion
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005540 hyaluronic acid binding