Spg001614.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg001614.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNA polymerase sigma factor sigA
Location	scaffold8: 33057426 .. 33062040 (+)
Sequence length	1527
RNA-Seq Expression	Spg001614.1
Synteny	Spg001614.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATATCTATTCCAACCAATAGCATCTCAGCTTCCCATATCTCCAATGCTCAAACATTTTCCTCTCAATTCTTTTCCATTATCTTTCATTTCTCCAACATTCTTGCATTCCCATTTTCTCTTTATTTCTTTCCATTCAATTTTGAATAAACCCCACCAGAATTTTGCATAAAATTCCCCAAAAAAAATCGTTGATATTCATCAAGCCAACAACAACATCAAACCATTCTGCCATTTTCTTCCTTTGGATTCATCGACCCTCTCTCTCTCTCTCTCTAGAGTTGTGGAGTGAAGACTGCATTGTCTTCCTCCATTTTATCCATTCAGGTACTTCATTGAAGCTCTCTTCCATGTAAATTCAATGATTTGTTGTTGGGTTCTGCAATTTTTCCCGATTTCTGTTTCTGGGCTCTGCAATTTTTTCTGTTTCAATGTTTCGTTCAATCGTTGAGTTGTAGTAACTGAGACTTGGGTTCGAAAATTGTTGAGGAATTCAATCCGGAGCTCGTTTTAGTTGGCCGATTTTGTTCTGTTTGCTCTTGTTTTAATACTTCTATGTTTGCCATGAGTGTCATGATGTTCTTGTTGAGTTTGTTTCCTTCTATTGTTCGTAGATTTCAGGTGGGAATTTAATCCCCTTTCTACTTTGTTTGATGAATTTAGGGCTGCTTGTGCTTCCGGTGGAGGAATTTGAGGTAACTATTTGAAGTCACTGATCCATTGTTGCTGGTGAAGGGAAATAGAATTGAAGTTTGATTTGGTGTAAATTGATTTTGTGTTGGACGTGTGATGATAAGAGTTTTGTGCACAAGAAGAAGAGAAGCCATATGATGGCAACAGCTGCAATAATTGGGCTTGGTGCAGCAAAGAGGCTGTTGAATTCTTCATCCTACTATTCTGATTTCACAGAAAAGGTTTTATATGCCAATGACCACAGGTTGGGACAAAGCCAAGTTTCCCCTACAAAGAGTGTGGTAATAGCAAAAGGTTCCGCTAACTTTTCTCCTAGCTATCCGTCATCAAATCGGCACTCACAATGCATCAAAGCTGTGAAGGAACATGTAGATACTCCCTCTTCTCCAACTGCAGAGCCATGGATTCATAACACCACTATCTGGGAAGATGAAGAAACTGACCTCAAATGTACTGTGGAGGCTCTTCTTTTGCTGCAAAAGTCCATGCTCGAGAAGCAATGGAATCTATCTTTTGAGCAAACCGTGTCGACTGATGCGCCTAGAGGAAAAACAGAGAAGAAAGTACCTGTTACTTGTTCTGGTGTGTCTGCACGGCAAAGGAGAATAAGTTCTAAGAGGAAAATACAGAGCAAACACGTTTTTATGGCTCAACCAAAAATCAGTAAACAGCTAAGACCTACTATCAGTCCTGAGCTACTCCAAAATCGCTTGAAGGGCTATGTGAAAGGTTTAGTAAGTGAAGAGCTACTTTCTCATGCTGAAGTTGTACGTCTTTCGAAGAAAATTAAAGTGGGTCTCGCATTGGAGGAGCGTAAAATCAGGTTACCACATGCTTCTTTTTCAGATTCTCATAGATTACTTTAGCAATGATTTATATTTACAATTTAGTAGTAGATAGCATCATTCTTGCTTGCCCTTTTCTTTCCATGTTAGTCTTTCTTTTTAGTCCTAATAACTTGACTGATGTGAGAAAGGAAACTAGCACAAGACTACTGGCTCTAGTAATGATATCATGAACTTCATATTGAATTTTGTTCTCCCTAACATCTGTAATGACTCCCAGACTGAAGGAAAGACTAGGATGTGAGCCCTCTGAAGACCAACTAGCAATATCACTTAAGATTTCTCGTGCCGAATTACGGTCAAGAGTAATGGAATGTTCATTAGCAAGAGAGAAGTTGGCGATGAGCAATGTTCGTTTGGTAATGTCTATTGCACAAAGATATGATAACATGGGGGCTGAAATGGCTGACTTAGTTCAGGTGAAGAGATTATGACAGTCCATACAGTTAACTGTAACCTTATTAGCTTCCCCCTAATATGAAGAGTTTCTTTATGTTTAATGTAGGGTGGCTTGATTGGACTTCTCCGTGGGATTGAGAAGTTTGATTCCTCAAAGGGGTTTAAAATCTCAACCTATGTTTATTGGTGGATACGCCAGGTGAGGATATGAATTCTTTGGACTTACTAGTTGATACCCTGTTGACAGCCAAAGCATCAGATACATCATCATTGATTTGGGTTTGAAAACTTATTACATTTTATACACAATGGTAGAAAATGTAAGAAGCTTTCAAACCCCAATCAATGAAAGTTTTTTCTTTTTAAAGAAAATCCCAAGTTTCTTCTACTGTTTTCTTATTTCAAAAAGATGAAAGACGGTCCTCCCCTGTAAAAGAAAATGAAACAAGCTCACTTTGTGTCATGGACATTTGGAGGGGGACAAACAGAATAAGAGACCGTTATCAAACATGAATCAAATGTAGTAGAGTTAGATAGTTATCCCGTGAGAATAATCGAGATAAGTGCAAGCTTTGGACACTCATATATAAAAAAAGTAATAAAAATAATAGAGAGATGAATGGAGTAGACATAAGCCTTTGGAAAAGAAAATGGGATATTTGAGTTTAAATTATGGTTAACCTTTAAACTTTCAAGTTGTGTCTTTTGATAAAACTATCTAATAGGTTTTTGAACTTTCAATTTTGTATCCATTAGACCTAAAACTTTAAAACTGCCTAATAGGTCCTTAACTTTCAATTTTTTGTCCAATAGACTTTTGAATATTGTTTAATATAGGTCATTGACCTATTCATCTTTTTTTTAAAAAAAAAAAATTAACGGACATACTTGACACAAAATTGAAAGTTTAGGATCCCATTAGACATACAATTCAATTTTATATCTAATTGATTACTTAAATTTAAAAATTTGGAATGTGTTAAGGACTTATTAGATGTAAAATTAAAAGGTTAGATACCGATTTAATATTTTTAAAATTCAAAAACCTATTAGACATAGAATTAAAAGTTCAATTAGACACTATTTAAAGTTAAAAAGACCAAATAGACACACCTAAAAATTTAGCGACTAAACTTATAATTTAACTTTAATTATCTAGGTAAGCCCTTGAACTTTTTGAGAGTATATTGTGTTACAGCAAGCACTGACCGTGGTTCAATGTCTTCCTTCATGCACAGGGTGTTTCAAGAGCATTAGTTGAGAATTCAAGAACGCTGAGATTGCCAACTCATTTGCACGAAAGATTAGGATTGATTCGCAACGCCAAAGTTAGACTGCAAGAGAAAGGAATCACTCCTTCACTTGATGTAAGTGAATATTTGCTACAGTATTACATCAAAATATTGTTAAACTTCAGTGCCAATAGCACTACCTGCTTAATGACAGTGGGAAAAAAAAAAAAGGAACTTCCACTGCTAATTATGATGAACTTTGATATTGCTTTTAACACTTTTCTATTTATCTCAGAGGATTGCAGAGTCCCTCAACATGTCCAAGAAGAAAGTCAAGAATGCTACTGAGGTATTACAAATTTCTAATAACCAAATTCACTCTATTGTTTCCAAATGAATATCTGTTTTTCGTTTTCCTTATGAAGCCAACCTCTCATCTCTTTTAGGCAATCAGTAAGGTGTTCTCGCTAGACCGAGAAGCGTTCCCTTCATTAAATGGTCTTCCTGGTGAAACTCATCATAGTGTAAGCCTTGAATAGCAACTCTGTTTCTGCAAACTTCACATGATCTTCAGAACTTTGTTCTTAATATTTGGCACTTCTTGAGTTCTTTCGTTAACGTTTTGTTTTTGCAGTATATCGCAGATAACCGCCTCGAGAACAACCCGTGGCATGGAACAGACACATGGATTCTGAAGGTAAAAATGATAGGCCACCAAGTCTGAGAATGAAAAACCATACCATTTTCATCAGTATAAGATGAAGAACGAACAGTTTGTTTGCTTATCTAGTTGAATGGTTGATTGAAACATGCTCGAAAATATTGGCAGGCTGAGGTTAACAAACTCATAAATTTGACACTTGGGGACCGAGAAAGAGAGATCATACGACTTTACCACGGTCTGGATAACGAATGTCTGACATGGGAGGAAATAAGCAAGCGGTAAGTGAAAGGAACTTGTCTGAGCAAAATGCAAATGCCATACTAAGTTAGCTGACAAATTGCACTGTTTGCTATGAGTTTTTTCAGCATAGGGTTGTCCAGAGAAAGGGTAAGGCAAGTTGGACTGGTGGCGTTGGAGAAACTAAAGAAGGCAGCCAAGACGAGGAAGATGGAAGCCATGTTGCTTAAACATTAATTTGTTAAACATATAATTACAAGTCATACATTGTAGAGACCGTCCATTATCTACTGTATATATACAGAAAGCAATACTGTGTTATTCGCCATTGTGATTTTGTTCAGAAATAGCGATGACAAATAGTAGGGAAAATTTCTGGAATGAGATTTGTATCCGTTGCCTGAGGAAGTTATTGTTGATTGGTGTTGAACACTGAATCGCCATCTACTAAATGTGAATCGATTTTTTATGAAATTCGGTTTCGAGCCAAGTTGTCTCGATGGTGTCGTGATCCTGCACAATGCTGCATCATCTATTCAAAAAAAA

mRNA sequence

ATGATGGCAACAGCTGCAATAATTGGGCTTGGTGCAGCAAAGAGGCTGTTGAATTCTTCATCCTACTATTCTGATTTCACAGAAAAGGTTTTATATGCCAATGACCACAGGTTGGGACAAAGCCAAGTTTCCCCTACAAAGAGTGTGGTAATAGCAAAAGGTTCCGCTAACTTTTCTCCTAGCTATCCGTCATCAAATCGGCACTCACAATGCATCAAAGCTGTGAAGGAACATGTAGATACTCCCTCTTCTCCAACTGCAGAGCCATGGATTCATAACACCACTATCTGGGAAGATGAAGAAACTGACCTCAAATGTACTGTGGAGGCTCTTCTTTTGCTGCAAAAGTCCATGCTCGAGAAGCAATGGAATCTATCTTTTGAGCAAACCGTGTCGACTGATGCGCCTAGAGGAAAAACAGAGAAGAAAGTACCTGTTACTTGTTCTGGTGTGTCTGCACGGCAAAGGAGAATAAGTTCTAAGAGGAAAATACAGAGCAAACACGTTTTTATGGCTCAACCAAAAATCAGTAAACAGCTAAGACCTACTATCAGTCCTGAGCTACTCCAAAATCGCTTGAAGGGCTATGTGAAAGGTTTAGTAAGTGAAGAGCTACTTTCTCATGCTGAAGTTGTACGTCTTTCGAAGAAAATTAAAGTGGGTCTCGCATTGGAGGAGCGTAAAATCAGACTGAAGGAAAGACTAGGATGTGAGCCCTCTGAAGACCAACTAGCAATATCACTTAAGATTTCTCGTGCCGAATTACGGTCAAGAGTAATGGAATGTTCATTAGCAAGAGAGAAGTTGGCGATGAGCAATGTTCGTTTGGTAATGTCTATTGCACAAAGATATGATAACATGGGGGCTGAAATGGCTGACTTAGTTCAGGGTGGCTTGATTGGACTTCTCCGTGGGATTGAGAAGTTTGATTCCTCAAAGGGGTTTAAAATCTCAACCTATGTTTATTGGTGGATACGCCAGGGTGTTTCAAGAGCATTAGTTGAGAATTCAAGAACGCTGAGATTGCCAACTCATTTGCACGAAAGATTAGGATTGATTCGCAACGCCAAAGTTAGACTGCAAGAGAAAGGAATCACTCCTTCACTTGATAGGATTGCAGAGTCCCTCAACATGTCCAAGAAGAAAGTCAAGAATGCTACTGAGGCAATCAGTAAGGTGTTCTCGCTAGACCGAGAAGCGTTCCCTTCATTAAATGGTCTTCCTGGTGAAACTCATCATAGTTATATCGCAGATAACCGCCTCGAGAACAACCCGTGGCATGGAACAGACACATGGATTCTGAAGGCTGAGGTTAACAAACTCATAAATTTGACACTTGGGGACCGAGAAAGAGAGATCATACGACTTTACCACGGTCTGGATAACGAATGTCTGACATGGGAGGAAATAAGCAAGCGCATAGGGTTGTCCAGAGAAAGGGTAAGGCAAGTTGGACTGGTGGCGTTGGAGAAACTAAAGAAGGCAGCCAAGACGAGGAAGATGGAAGCCATGTTGCTTAAACATTAA

Coding sequence (CDS)

ATGATGGCAACAGCTGCAATAATTGGGCTTGGTGCAGCAAAGAGGCTGTTGAATTCTTCATCCTACTATTCTGATTTCACAGAAAAGGTTTTATATGCCAATGACCACAGGTTGGGACAAAGCCAAGTTTCCCCTACAAAGAGTGTGGTAATAGCAAAAGGTTCCGCTAACTTTTCTCCTAGCTATCCGTCATCAAATCGGCACTCACAATGCATCAAAGCTGTGAAGGAACATGTAGATACTCCCTCTTCTCCAACTGCAGAGCCATGGATTCATAACACCACTATCTGGGAAGATGAAGAAACTGACCTCAAATGTACTGTGGAGGCTCTTCTTTTGCTGCAAAAGTCCATGCTCGAGAAGCAATGGAATCTATCTTTTGAGCAAACCGTGTCGACTGATGCGCCTAGAGGAAAAACAGAGAAGAAAGTACCTGTTACTTGTTCTGGTGTGTCTGCACGGCAAAGGAGAATAAGTTCTAAGAGGAAAATACAGAGCAAACACGTTTTTATGGCTCAACCAAAAATCAGTAAACAGCTAAGACCTACTATCAGTCCTGAGCTACTCCAAAATCGCTTGAAGGGCTATGTGAAAGGTTTAGTAAGTGAAGAGCTACTTTCTCATGCTGAAGTTGTACGTCTTTCGAAGAAAATTAAAGTGGGTCTCGCATTGGAGGAGCGTAAAATCAGACTGAAGGAAAGACTAGGATGTGAGCCCTCTGAAGACCAACTAGCAATATCACTTAAGATTTCTCGTGCCGAATTACGGTCAAGAGTAATGGAATGTTCATTAGCAAGAGAGAAGTTGGCGATGAGCAATGTTCGTTTGGTAATGTCTATTGCACAAAGATATGATAACATGGGGGCTGAAATGGCTGACTTAGTTCAGGGTGGCTTGATTGGACTTCTCCGTGGGATTGAGAAGTTTGATTCCTCAAAGGGGTTTAAAATCTCAACCTATGTTTATTGGTGGATACGCCAGGGTGTTTCAAGAGCATTAGTTGAGAATTCAAGAACGCTGAGATTGCCAACTCATTTGCACGAAAGATTAGGATTGATTCGCAACGCCAAAGTTAGACTGCAAGAGAAAGGAATCACTCCTTCACTTGATAGGATTGCAGAGTCCCTCAACATGTCCAAGAAGAAAGTCAAGAATGCTACTGAGGCAATCAGTAAGGTGTTCTCGCTAGACCGAGAAGCGTTCCCTTCATTAAATGGTCTTCCTGGTGAAACTCATCATAGTTATATCGCAGATAACCGCCTCGAGAACAACCCGTGGCATGGAACAGACACATGGATTCTGAAGGCTGAGGTTAACAAACTCATAAATTTGACACTTGGGGACCGAGAAAGAGAGATCATACGACTTTACCACGGTCTGGATAACGAATGTCTGACATGGGAGGAAATAAGCAAGCGCATAGGGTTGTCCAGAGAAAGGGTAAGGCAAGTTGGACTGGTGGCGTTGGAGAAACTAAAGAAGGCAGCCAAGACGAGGAAGATGGAAGCCATGTTGCTTAAACATTAA

Protein sequence

MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYANDHRLGQSQVSPTKSVVIAKGSANFSPSYPSSNRHSQCIKAVKEHVDTPSSPTAEPWIHNTTIWEDEETDLKCTVEALLLLQKSMLEKQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRISSKRKIQSKHVFMAQPKISKQLRPTISPELLQNRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKIRLKERLGCEPSEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWILKAEVNKLINLTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKKAAKTRKMEAMLLKH

Homology

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BLAST of Spg001614.1 vs. NCBI nr
Match: XP_038902049.1 (RNA polymerase sigma factor sigA [Benincasa hispida])

HSP 1 Score: 957.2 bits (2473), Expect = 5.6e-275
Identity = 497/509 (97.64%), Postives = 503/509 (98.82%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYA-NDHRLGQSQVSPTKSVVIAKGSANFS 60
           MMATAAIIGLGAAKRLLNSSSYYSDFTEK+LY  NDHRLGQ+QVSPTKSVVIAK SANFS
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYVNNDHRLGQTQVSPTKSVVIAKSSANFS 60

Query: 61  PSYPSSNRHSQCIKAVKEHVDTPSSPTAEPWIHNTTIWEDEETDLKCTVEALLLLQKSML 120
           PSYPSSNRHSQCIKAVKEHVDTPSSPTAEPW+HNTTIWEDEE DLKCTVEALLLLQKSML
Sbjct: 61  PSYPSSNRHSQCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEEIDLKCTVEALLLLQKSML 120

Query: 121 EKQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRISSKRKIQSKHVFMAQPKISKQ 180
           EKQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRR+SSKRKIQSKHVFMAQPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 181 LRPTISPELLQNRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKIRLKERLGCEP 240
           LRPTISPELLQNRLKGYVKGL+SEELLSHAEVVRLSKKIKVGLALEERK RLKERLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEP 240

Query: 241 SEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVR 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVR
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVR 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 RLENNPWHGTDTWILKAEVNKLINLTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
            LENNPWHGTDTWILKAEVNKLIN+TLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 509
           RVRQVGLVALEKLKKAAKTRKMEAMLLKH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 509

[Close]

BLAST of Spg001614.1 vs. NCBI nr
Match: XP_016902935.1 (PREDICTED: RNA polymerase sigma factor sigA [Cucumis melo] >KAA0066336.1 RNA polymerase sigma factor sigA [Cucumis melo var. makuwa] >TYK00943.1 RNA polymerase sigma factor sigA [Cucumis melo var. makuwa])

HSP 1 Score: 936.4 bits (2419), Expect = 1.0e-268
Identity = 487/509 (95.68%), Postives = 498/509 (97.84%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYANDHRLGQSQVSPTKSVVIAKGSANFSP 60
           MMAT AIIGLGAAKRLLNSSSYYSDFTEK+LYAND+RLGQ+QVSPTKSVVIAK SANFSP
Sbjct: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60

Query: 61  SYPSSNRHS-QCIKAVKEHVDTPSSPTAEPWIHNTTIWEDEETDLKCTVEALLLLQKSML 120
           SYP SNRHS QCIKAVKEHV+TPSSPTAEPW+ NTTIWEDEETDLKCTVEALLLLQKSML
Sbjct: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120

Query: 121 EKQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRISSKRKIQSKHVFMAQPKISKQ 180
           EKQWNLSFEQTVSTD PR KT KKVPVTCSGVSARQRR+SSKRKIQSKHVFMAQPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 181 LRPTISPELLQNRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKIRLKERLGCEP 240
           LRPTISPELLQNRLKGYVKGL+SEELLSHAEVVRLSKKIKVGLALEE K RLKERLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240

Query: 241 SEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SEDQLAISLKISRAELRSR+MECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVR 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 RLENNPWHGTDTWILKAEVNKLINLTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
            LENNPWHGTDTWILKAEVNKLIN+TLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 509
           RVRQVGLVALEKLKKAAKTRKMEAML+KH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 509

[Close]

BLAST of Spg001614.1 vs. NCBI nr
Match: KAG6605170.1 (RNA polymerase sigma factor sigA, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035161.1 RNA polymerase sigma factor sigA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 931.0 bits (2405), Expect = 4.3e-267
Identity = 481/508 (94.69%), Postives = 495/508 (97.44%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYANDHRLGQSQVSPTKSVVIAKGSANFSP 60
           MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLY NDHRLGQ+QVS TKSVVIAK SA+FSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSP 60

Query: 61  SYPSSNRHSQCIKAVKEHVDTPSSPTAEPWIHNTTIWEDEETDLKCTVEALLLLQKSMLE 120
           SYP SNRH QCIKAVKEHVDTPSSPTAEPW+HNTTIWEDEETDLKCTVEALLLLQKSMLE
Sbjct: 61  SYPPSNRHVQCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLE 120

Query: 121 KQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRISSKRKIQSKHVFMAQPKISKQL 180
           KQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRR+SSKRKIQSKHVFMAQPKISKQL
Sbjct: 121 KQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQL 180

Query: 181 RPTISPELLQNRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKIRLKERLGCEPS 240
           +P+ISPELLQNRL+GYVKGLVSEE+L H+EVVRLSKKIKVGLALEE K RLKERL CEPS
Sbjct: 181 KPSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCEPS 240

Query: 241 EDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300
           E+QLAISL+ISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI
Sbjct: 241 EEQLAISLEISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL 360
           GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+L
Sbjct: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKL 360

Query: 361 QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420
           QEKGITPS+DRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR
Sbjct: 361 QEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 421 LENNPWHGTDTWILKAEVNKLINLTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480
           LENNPWHGTDTW LK EVNKLIN+TL DREREIIRLYHGLDNECLTWEEISKRIGLSRER
Sbjct: 421 LENNPWHGTDTWSLKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480

Query: 481 VRQVGLVALEKLKKAAKTRKMEAMLLKH 509
           VRQVGLVALEKLKKAAK RKMEAMLLKH
Sbjct: 481 VRQVGLVALEKLKKAAKMRKMEAMLLKH 508

[Close]

BLAST of Spg001614.1 vs. NCBI nr
Match: XP_023533104.1 (RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo] >XP_023533105.1 RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo] >XP_023533106.1 RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 930.2 bits (2403), Expect = 7.4e-267
Identity = 480/508 (94.49%), Postives = 495/508 (97.44%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYANDHRLGQSQVSPTKSVVIAKGSANFSP 60
           MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLY NDHRLGQ+QVS TKSVVIAK SA+FSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSP 60

Query: 61  SYPSSNRHSQCIKAVKEHVDTPSSPTAEPWIHNTTIWEDEETDLKCTVEALLLLQKSMLE 120
           SYP SNRH QCIKAVKEHVDTPSSPTAEPW+HNTTIWEDEETDLKCTVEALLLLQKSMLE
Sbjct: 61  SYPPSNRHVQCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLE 120

Query: 121 KQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRISSKRKIQSKHVFMAQPKISKQL 180
           KQWNLSFEQTVSTD PRGKTEKKVPVTCSGVSARQRR+SSKRKIQSKHVF+AQPKISKQL
Sbjct: 121 KQWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFIAQPKISKQL 180

Query: 181 RPTISPELLQNRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKIRLKERLGCEPS 240
           +P+ISPELLQNRL+GYVKGLVSEE+L H+EVVRLSKKIKVGLALEE K RLKERL CEPS
Sbjct: 181 KPSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCEPS 240

Query: 241 EDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300
           E+QLAISL+ISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI
Sbjct: 241 EEQLAISLEISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL 360
           GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+L
Sbjct: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKL 360

Query: 361 QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420
           QEKGITPS+DRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR
Sbjct: 361 QEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 421 LENNPWHGTDTWILKAEVNKLINLTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480
           LENNPWHGTDTWILK EVNKLIN+TL DREREIIRLYHGLDNECLTWEEISKRIGLSRER
Sbjct: 421 LENNPWHGTDTWILKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480

Query: 481 VRQVGLVALEKLKKAAKTRKMEAMLLKH 509
           VRQVGLVALEKLKKAAK RKMEAMLLKH
Sbjct: 481 VRQVGLVALEKLKKAAKMRKMEAMLLKH 508

[Close]

BLAST of Spg001614.1 vs. NCBI nr
Match: XP_023006851.1 (RNA polymerase sigma factor sigA-like [Cucurbita maxima] >XP_023006852.1 RNA polymerase sigma factor sigA-like [Cucurbita maxima] >XP_023006853.1 RNA polymerase sigma factor sigA-like [Cucurbita maxima])

HSP 1 Score: 927.2 bits (2395), Expect = 6.2e-266
Identity = 479/508 (94.29%), Postives = 493/508 (97.05%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYANDHRLGQSQVSPTKSVVIAKGSANFSP 60
           MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLY NDHRLGQ+QVS TK VVIAK SA+FSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKGVVIAKHSADFSP 60

Query: 61  SYPSSNRHSQCIKAVKEHVDTPSSPTAEPWIHNTTIWEDEETDLKCTVEALLLLQKSMLE 120
           SY  SNRH QCIKAVKEHVDTPSSPTAEPW+HNTTIWEDEETDLKCTVEALLLLQKSMLE
Sbjct: 61  SYSPSNRHVQCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLE 120

Query: 121 KQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRISSKRKIQSKHVFMAQPKISKQL 180
           KQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRR+SSKRKIQSKHVFMAQPKISKQL
Sbjct: 121 KQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQL 180

Query: 181 RPTISPELLQNRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKIRLKERLGCEPS 240
           +P ISPELLQNRL+GYVKGLVSEE+L H+EVVRLSKKIKVGLALEE K RLKERL C+PS
Sbjct: 181 KPNISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCDPS 240

Query: 241 EDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300
           E+QLAISL+ISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI
Sbjct: 241 EEQLAISLEISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL 360
           GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+L
Sbjct: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKL 360

Query: 361 QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420
           QEKGITPS+DRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR
Sbjct: 361 QEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 421 LENNPWHGTDTWILKAEVNKLINLTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480
           LENNPWHGTDTWILK EVNKLIN+TL DREREIIRLYHGLDNECLTWEEISKRIGLSRER
Sbjct: 421 LENNPWHGTDTWILKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480

Query: 481 VRQVGLVALEKLKKAAKTRKMEAMLLKH 509
           VRQVGLVALEKLKKAAK RKMEAMLLKH
Sbjct: 481 VRQVGLVALEKLKKAAKMRKMEAMLLKH 508

[Close]

BLAST of Spg001614.1 vs. ExPASy Swiss-Prot
Match: O24629 (RNA polymerase sigma factor sigA OS=Arabidopsis thaliana OX=3702 GN=SIGA PE=1 SV=1)

HSP 1 Score: 678.3 bits (1749), Expect = 6.6e-194
Identity = 363/516 (70.35%), Postives = 426/516 (82.56%), Query Frame = 0


Query: 2   MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYANDHRLGQSQVSPTKSVVIAKGSANFSPS 61
           MATAA+IGL   KRLL+SS Y+SD TEK L  NDH   Q  ++ TKS + AK ++N+SPS
Sbjct: 1   MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 62  YPSSNRHSQCIKAVKEHVDTPSSPTAEPWIHNTTIWE------DEETDLKCTVEALLLLQ 121
           +PSSNRH+Q  KA+KE VD  S  T +PW+ N T  E      D++  +  +VEA+LLLQ
Sbjct: 61  FPSSNRHTQSAKALKESVDVAS--TEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQ 120

Query: 122 KSMLEKQWNLSFEQTVSTDAPRGKT--EKKVPV-TCSGVSARQRRISSKRKIQSKHVFMA 181
           KSMLEK WNLSFE+ VS++ P   T  +KK+PV TCSG+SARQRRI +K+K    HV   
Sbjct: 121 KSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHV--- 180

Query: 182 QPKISKQLRPTISPELLQNRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKIRLK 241
                      +S      +++GYVKG++SE++LSH EVVRLSKKIK GL L++ K RLK
Sbjct: 181 ---------KAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLK 240

Query: 242 ERLGCEPSEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMA 301
           +RLGCEPS++QLA+SLKISRAEL++ +MEC LAREKLAMSNVRLVMSIAQRYDN+GAEM+
Sbjct: 241 DRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMS 300

Query: 302 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGL 361
           DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHERLGL
Sbjct: 301 DLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGL 360

Query: 362 IRNAKVRLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETH 421
           IRNAK+RLQEKGITPS+DRIAESLNMS+KKV+NATEA+SKVFSLDR+AFPSLNGLPGETH
Sbjct: 361 IRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETH 420

Query: 422 HSYIADNRLENNPWHGTDTWILKAEVNKLINLTLGDREREIIRLYHGLDNECLTWEEISK 481
           HSYIAD RLENNPWHG D   LK EV+KLI+ TLG+RE+EIIRLY+GLD ECLTWE+ISK
Sbjct: 421 HSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISK 480

Query: 482 RIGLSRERVRQVGLVALEKLKKAAKTRKMEAMLLKH 509
           RIGLSRERVRQVGLVALEKLK AA+ RKMEAM+LK+
Sbjct: 481 RIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502

[Close]

BLAST of Spg001614.1 vs. ExPASy Swiss-Prot
Match: Q0J7T6 (RNA polymerase sigma factor sigA OS=Oryza sativa subsp. japonica OX=39947 GN=SIGA PE=2 SV=2)

HSP 1 Score: 464.9 bits (1195), Expect = 1.1e-129
Identity = 271/531 (51.04%), Postives = 356/531 (67.04%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYANDHRLGQSQVSPTKSVVIAKGSANFSP 60
           M AT A+IGL A  RLL++S     F    L  +   LG               + +F+P
Sbjct: 1   MTATPAVIGLSAGNRLLSAS-----FGPTDLMPDKVSLGVGGGGGGGGGGGGGDAMSFAP 60

Query: 61  SYP---------------SSNRHSQCIKAVKEHVD-----TPSSPTAEPWIHNTTIWEDE 120
             P               S +  +Q ++A++ H        P  P   P   +       
Sbjct: 61  PAPATPKLTAVAAHRLKLSPHGRAQVMRALRHHSSAAAALAPPPPPPPPPTPSPASRAAH 120

Query: 121 ETDLKCTVEALLLLQKSMLEKQWNLSFE-----QTVSTDAPRGKTEK-KVPVTCSGVSAR 180
             DL+ ++EA++LLQ+SMLEKQW L F+       +        T K  V V  S VSAR
Sbjct: 121 AHDLESSLEAIVLLQRSMLEKQWELPFDDDNHAMAIGLAEDDDDTSKATVVVARSSVSAR 180

Query: 181 QRRISSKRKIQSKHVFMAQPKISKQLRPTISPELLQNRLKGYVKGLVSEELLSHAEVVRL 240
           QRR+S +R+ ++K         +      +SPEL+Q+R + Y++G VS+ELL+H +VV L
Sbjct: 181 QRRMSGRRRGRTK---------NGAAHFAVSPELIQSRNRIYLRGTVSKELLTHKQVVHL 240

Query: 241 SKKIKVGLALEERKIRLKERLGCEPSEDQLAISLKISRAELRSRVMECSLAREKLAMSNV 300
           S KIK G+ L++++ +LKE+LG EPS  QLA SLKIS  ELRSR+ E  LARE L MSN+
Sbjct: 241 SHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNL 300

Query: 301 RLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALV 360
           RLV+SIAQ+YDN+G E+ADL+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVSRAL 
Sbjct: 301 RLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALA 360

Query: 361 ENSRTLRLPTHLHERLGLIRNAKVRLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVF 420
           ENS+T RLPT+LHERL  IR AK  L+++GI P+++ IA SLN+S+KKV NATEA++KV 
Sbjct: 361 ENSKTFRLPTYLHERLIAIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVNKVL 420

Query: 421 SLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWILKAEVNKLINLTLGDREREII 480
           SLD++AFPSLNGLPGET HSYI D  + N+PWHG + W LK EVNKL+N TL +RER+II
Sbjct: 421 SLDQQAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDII 480

Query: 481 RLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKKAAKTRKMEAML 506
           RLYHG+  +C TWE+IS++ GLSRERVRQVGL+A+EKLK AA+ + +EA+L
Sbjct: 481 RLYHGIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALL 517

[Close]

BLAST of Spg001614.1 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 8.4e-40
Identity = 113/330 (34.24%), Postives = 185/330 (56.06%), Query Frame = 0


Query: 175 KISKQLRPTISPE--LLQNRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKIRLK 234
           K +K  R T S +    ++ ++ Y++ +    LL   E + L++KI   L LE  + RL 
Sbjct: 62  KAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLS 121

Query: 235 ERLGCEPSEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMA 294
           E+L  +P + + A ++++     R R+     A++K+  SN+RLV+SIA++Y N G    
Sbjct: 122 EKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQ 181

Query: 295 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGL 354
           DL+Q G +GL+R  EKFD  KG+K STY  WWIRQ ++RA+ + SRT+RLP HL+E +  
Sbjct: 182 DLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISR 241

Query: 355 I-RNAKVRLQEKGITPSLDRIAESLNMSKKKV----KNATEAISKVFSLDREAFPSLNGL 414
           I +  K+  QE G  P+ + IA  + M+ +K+    K+A   IS    + +E    L   
Sbjct: 242 IKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDF 301

Query: 415 ---PGETHHSYIADNRLENNPWHGTDTWILKAEVNKLINLTLGDREREIIRLYHGLDN-E 474
               GET    ++ N             +L+ ++ K+++ +L  RER+++RL +GLD+  
Sbjct: 302 IESDGETPEDQVSKN-------------LLREDLEKVLD-SLSPRERDVLRLRYGLDDGR 361

Query: 475 CLTWEEISKRIGLSRERVRQVGLVALEKLK 494
             T EEI +   ++RER+RQ+   AL KL+
Sbjct: 362 MKTLEEIGQIFNVTRERIRQIEAKALRKLR 377

[Close]

BLAST of Spg001614.1 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 165.6 bits (418), Expect = 1.4e-39
Identity = 114/331 (34.44%), Postives = 183/331 (55.29%), Query Frame = 0


Query: 172 AQPKISKQLRPTISPELLQNRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKIRL 231
           A  K   ++R T +    ++ ++ Y++ +    LL   E + L+++I   LALE  +  L
Sbjct: 74  AAAKAKAKVRKTYT----EDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDEL 133

Query: 232 KERLGCEPSEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEM 291
            E+L   PS+ + A ++     E R R+     A++K+  SN+RLV+SIA++Y N G   
Sbjct: 134 LEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSF 193

Query: 292 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLG 351
            DL+Q G +GL+R  EKFD  KG+K STY  WWIRQ ++RA+ + SRT+RLP HL+E + 
Sbjct: 194 QDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETIS 253

Query: 352 LI-RNAKVRLQEKGITPSLDRIAESLNMSKKKV----KNATEAISKVFSLDREAFPSLNG 411
            I +  K+  QE G  P+ + IA  + M+ +K+    K+A   IS    + +E    L  
Sbjct: 254 RIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 313

Query: 412 L---PGETHHSYIADNRLENNPWHGTDTWILKAEVNKLINLTLGDREREIIRLYHGLDN- 471
                GET    +A N             +L+ ++  +++ TL  RER+++RL +GLD+ 
Sbjct: 314 FIEADGETPEDEVAKN-------------LLREDLEGVLS-TLSPRERDVLRLRYGLDDG 373

Query: 472 ECLTWEEISKRIGLSRERVRQVGLVALEKLK 494
              T EEI +   ++RER+RQ+   AL KL+
Sbjct: 374 RMKTLEEIGQLFNVTRERIRQIEAKALRKLR 386

[Close]

BLAST of Spg001614.1 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 162.9 bits (411), Expect = 9.3e-39
Identity = 111/310 (35.81%), Postives = 175/310 (56.45%), Query Frame = 0


Query: 202 SEELLSHAEVVRLSKKIKVGLALEERKIRLKERLGCEPSEDQLAISLKISRAELRSRVME 261
           S +LL+  E   LS  I+  L LE  +  L ER G +P+  Q A +  + +  LR R+  
Sbjct: 269 SSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHH 328

Query: 262 CSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYV 321
            +L ++K+  SN+RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD++KGFK STY 
Sbjct: 329 GTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 388

Query: 322 YWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL-QEKGITPSLDRIAESLNMSK 381
           +WWI+Q V ++L + SR +RLP H+ E    ++ A+ +L  E G  P  + IAE+  +S 
Sbjct: 389 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSM 448

Query: 382 KKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWI---LKAE 441
           K++     +     SLD++   + N  P E     IAD     +     D  I   ++ +
Sbjct: 449 KRLMAVLLSPKPPRSLDQKIGMNQNLKPSEV----IADPEAVTS----EDILIKEFMRQD 508

Query: 442 VNKLINLTLGDREREIIRLYHGL-DNECLTWEEISKRIGLSRERVRQVGLVALEKLKKAA 501
           ++K+++ +LG RE+++IR   G+ D    T +EI + +G+SRERVRQ+   A  KLK   
Sbjct: 509 LDKVLD-SLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKK 568

Query: 502 KTRKMEAMLL 507
           +   ++  L+
Sbjct: 569 RNNHLQQYLV 569

[Close]

BLAST of Spg001614.1 vs. ExPASy TrEMBL
Match: A0A5D3BME8 (RNA polymerase sigma factor sigA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001180 PE=3 SV=1)

HSP 1 Score: 936.4 bits (2419), Expect = 5.0e-269
Identity = 487/509 (95.68%), Postives = 498/509 (97.84%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYANDHRLGQSQVSPTKSVVIAKGSANFSP 60
           MMAT AIIGLGAAKRLLNSSSYYSDFTEK+LYAND+RLGQ+QVSPTKSVVIAK SANFSP
Sbjct: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60

Query: 61  SYPSSNRHS-QCIKAVKEHVDTPSSPTAEPWIHNTTIWEDEETDLKCTVEALLLLQKSML 120
           SYP SNRHS QCIKAVKEHV+TPSSPTAEPW+ NTTIWEDEETDLKCTVEALLLLQKSML
Sbjct: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120

Query: 121 EKQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRISSKRKIQSKHVFMAQPKISKQ 180
           EKQWNLSFEQTVSTD PR KT KKVPVTCSGVSARQRR+SSKRKIQSKHVFMAQPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 181 LRPTISPELLQNRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKIRLKERLGCEP 240
           LRPTISPELLQNRLKGYVKGL+SEELLSHAEVVRLSKKIKVGLALEE K RLKERLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240

Query: 241 SEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SEDQLAISLKISRAELRSR+MECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVR 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 RLENNPWHGTDTWILKAEVNKLINLTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
            LENNPWHGTDTWILKAEVNKLIN+TLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 509
           RVRQVGLVALEKLKKAAKTRKMEAML+KH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 509

[Close]

BLAST of Spg001614.1 vs. ExPASy TrEMBL
Match: A0A1S4E4N5 (RNA polymerase sigma factor sigA OS=Cucumis melo OX=3656 GN=LOC103501092 PE=3 SV=1)

HSP 1 Score: 936.4 bits (2419), Expect = 5.0e-269
Identity = 487/509 (95.68%), Postives = 498/509 (97.84%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYANDHRLGQSQVSPTKSVVIAKGSANFSP 60
           MMAT AIIGLGAAKRLLNSSSYYSDFTEK+LYAND+RLGQ+QVSPTKSVVIAK SANFSP
Sbjct: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60

Query: 61  SYPSSNRHS-QCIKAVKEHVDTPSSPTAEPWIHNTTIWEDEETDLKCTVEALLLLQKSML 120
           SYP SNRHS QCIKAVKEHV+TPSSPTAEPW+ NTTIWEDEETDLKCTVEALLLLQKSML
Sbjct: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120

Query: 121 EKQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRISSKRKIQSKHVFMAQPKISKQ 180
           EKQWNLSFEQTVSTD PR KT KKVPVTCSGVSARQRR+SSKRKIQSKHVFMAQPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 181 LRPTISPELLQNRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKIRLKERLGCEP 240
           LRPTISPELLQNRLKGYVKGL+SEELLSHAEVVRLSKKIKVGLALEE K RLKERLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240

Query: 241 SEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SEDQLAISLKISRAELRSR+MECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVR 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 RLENNPWHGTDTWILKAEVNKLINLTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
            LENNPWHGTDTWILKAEVNKLIN+TLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 509
           RVRQVGLVALEKLKKAAKTRKMEAML+KH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 509

[Close]

BLAST of Spg001614.1 vs. ExPASy TrEMBL
Match: A0A6J1KWY7 (RNA polymerase sigma factor sigA-like OS=Cucurbita maxima OX=3661 GN=LOC111499522 PE=3 SV=1)

HSP 1 Score: 927.2 bits (2395), Expect = 3.0e-266
Identity = 479/508 (94.29%), Postives = 493/508 (97.05%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYANDHRLGQSQVSPTKSVVIAKGSANFSP 60
           MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLY NDHRLGQ+QVS TK VVIAK SA+FSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKGVVIAKHSADFSP 60

Query: 61  SYPSSNRHSQCIKAVKEHVDTPSSPTAEPWIHNTTIWEDEETDLKCTVEALLLLQKSMLE 120
           SY  SNRH QCIKAVKEHVDTPSSPTAEPW+HNTTIWEDEETDLKCTVEALLLLQKSMLE
Sbjct: 61  SYSPSNRHVQCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSMLE 120

Query: 121 KQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRISSKRKIQSKHVFMAQPKISKQL 180
           KQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRR+SSKRKIQSKHVFMAQPKISKQL
Sbjct: 121 KQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQL 180

Query: 181 RPTISPELLQNRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKIRLKERLGCEPS 240
           +P ISPELLQNRL+GYVKGLVSEE+L H+EVVRLSKKIKVGLALEE K RLKERL C+PS
Sbjct: 181 KPNISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCDPS 240

Query: 241 EDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300
           E+QLAISL+ISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI
Sbjct: 241 EEQLAISLEISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL 360
           GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+L
Sbjct: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKL 360

Query: 361 QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420
           QEKGITPS+DRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR
Sbjct: 361 QEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 421 LENNPWHGTDTWILKAEVNKLINLTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480
           LENNPWHGTDTWILK EVNKLIN+TL DREREIIRLYHGLDNECLTWEEISKRIGLSRER
Sbjct: 421 LENNPWHGTDTWILKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480

Query: 481 VRQVGLVALEKLKKAAKTRKMEAMLLKH 509
           VRQVGLVALEKLKKAAK RKMEAMLLKH
Sbjct: 481 VRQVGLVALEKLKKAAKMRKMEAMLLKH 508

[Close]

BLAST of Spg001614.1 vs. ExPASy TrEMBL
Match: A0A6J1D604 (RNA polymerase sigma factor sigA OS=Momordica charantia OX=3673 GN=LOC111017241 PE=3 SV=1)

HSP 1 Score: 925.6 bits (2391), Expect = 8.8e-266
Identity = 479/508 (94.29%), Postives = 493/508 (97.05%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYANDHRLGQSQVSPTKSVVIAKGSANFSP 60
           MMATAAIIGLGAAKRLLNSSSYYSDF EK+LYANDHRLGQSQVSPTKSVVIAK SANFSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFPEKLLYANDHRLGQSQVSPTKSVVIAKSSANFSP 60

Query: 61  SYPSSNRHSQCIKAVKEHVDTPSSPTAEPWIHNTTIWEDEETDLKCTVEALLLLQKSMLE 120
           S+PSSNRH+QCIKAVKEHVDTPSSPT EPW+ N+T WEDEE DLKCTVEALLLLQKSMLE
Sbjct: 61  SFPSSNRHTQCIKAVKEHVDTPSSPTVEPWLQNSTQWEDEEIDLKCTVEALLLLQKSMLE 120

Query: 121 KQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRISSKRKIQSKHVFMAQPKISKQL 180
           KQWNLSFEQTV TDA RG+T+KKVPVTCSGVSARQRR+SSKRKIQSK+ FM QPKISKQL
Sbjct: 121 KQWNLSFEQTVPTDASRGRTQKKVPVTCSGVSARQRRMSSKRKIQSKNCFMVQPKISKQL 180

Query: 181 RPTISPELLQNRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKIRLKERLGCEPS 240
           R TISPELLQ RLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERK RLKERLGCEPS
Sbjct: 181 RSTISPELLQTRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEPS 240

Query: 241 EDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300
           EDQLAISLKISR ELRSRV+ECSLA+EKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI
Sbjct: 241 EDQLAISLKISRTELRSRVIECSLAKEKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL 360
           GLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL
Sbjct: 301 GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL 360

Query: 361 QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420
           QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 
Sbjct: 361 QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNX 420

Query: 421 LENNPWHGTDTWILKAEVNKLINLTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480
           LEN+PWHGTDTWILKAEVNKLIN+TLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER
Sbjct: 421 LENDPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480

Query: 481 VRQVGLVALEKLKKAAKTRKMEAMLLKH 509
           VRQVGLVALEKLKKAAKTRKMEAMLLKH
Sbjct: 481 VRQVGLVALEKLKKAAKTRKMEAMLLKH 508

[Close]

BLAST of Spg001614.1 vs. ExPASy TrEMBL
Match: A0A6J1G739 (RNA polymerase sigma factor sigA-like OS=Cucurbita moschata OX=3662 GN=LOC111451427 PE=3 SV=1)

HSP 1 Score: 920.2 bits (2377), Expect = 3.7e-264
Identity = 476/508 (93.70%), Postives = 492/508 (96.85%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYANDHRLGQSQVSPTKSVVIAKGSANFSP 60
           MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLY NDHRLGQ+QVS TKSVVIAK SA+FSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSP 60

Query: 61  SYPSSNRHSQCIKAVKEHVDTPSSPTAEPWIHNTTIWEDEETDLKCTVEALLLLQKSMLE 120
           SYP SNRH QCIKAVKEHVDTPSSPTAEPW++NTTIWEDEETDLKCTVEALLLLQKSMLE
Sbjct: 61  SYPPSNRHVQCIKAVKEHVDTPSSPTAEPWLNNTTIWEDEETDLKCTVEALLLLQKSMLE 120

Query: 121 KQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRISSKRKIQSKHVFMAQPKISKQL 180
           KQWNLSFEQTVSTD PRGKTEKKVPVTCSGVSARQRR++SKRKIQSKHVFMAQPKISKQ 
Sbjct: 121 KQWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMNSKRKIQSKHVFMAQPKISKQQ 180

Query: 181 RPTISPELLQNRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKIRLKERLGCEPS 240
           +P+ISPELLQNRL+GYVKGLVSEE+L H+EVVRLSKKIKVGLALEE K RLKERL CEPS
Sbjct: 181 KPSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCEPS 240

Query: 241 EDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300
           E+QLAISL+IS AELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI
Sbjct: 241 EEQLAISLEISCAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL 360
           GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+L
Sbjct: 301 GLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKL 360

Query: 361 QEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420
           QEKGITPS+DRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR
Sbjct: 361 QEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNR 420

Query: 421 LENNPWHGTDTWILKAEVNKLINLTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480
           LENNPWHGTDTW LK EVNKLIN+TL DREREIIRLYHGLDNECLTWEEISKRIGLSRER
Sbjct: 421 LENNPWHGTDTWSLKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRER 480

Query: 481 VRQVGLVALEKLKKAAKTRKMEAMLLKH 509
           VRQVGLVALEKLKKAAK RKMEAMLLKH
Sbjct: 481 VRQVGLVALEKLKKAAKMRKMEAMLLKH 508

[Close]

BLAST of Spg001614.1 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 678.3 bits (1749), Expect = 4.7e-195
Identity = 363/516 (70.35%), Postives = 426/516 (82.56%), Query Frame = 0


Query: 2   MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYANDHRLGQSQVSPTKSVVIAKGSANFSPS 61
           MATAA+IGL   KRLL+SS Y+SD TEK L  NDH   Q  ++ TKS + AK ++N+SPS
Sbjct: 1   MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 62  YPSSNRHSQCIKAVKEHVDTPSSPTAEPWIHNTTIWE------DEETDLKCTVEALLLLQ 121
           +PSSNRH+Q  KA+KE VD  S  T +PW+ N T  E      D++  +  +VEA+LLLQ
Sbjct: 61  FPSSNRHTQSAKALKESVDVAS--TEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQ 120

Query: 122 KSMLEKQWNLSFEQTVSTDAPRGKT--EKKVPV-TCSGVSARQRRISSKRKIQSKHVFMA 181
           KSMLEK WNLSFE+ VS++ P   T  +KK+PV TCSG+SARQRRI +K+K    HV   
Sbjct: 121 KSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHV--- 180

Query: 182 QPKISKQLRPTISPELLQNRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKIRLK 241
                      +S      +++GYVKG++SE++LSH EVVRLSKKIK GL L++ K RLK
Sbjct: 181 ---------KAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLK 240

Query: 242 ERLGCEPSEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMA 301
           +RLGCEPS++QLA+SLKISRAEL++ +MEC LAREKLAMSNVRLVMSIAQRYDN+GAEM+
Sbjct: 241 DRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMS 300

Query: 302 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGL 361
           DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHERLGL
Sbjct: 301 DLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGL 360

Query: 362 IRNAKVRLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETH 421
           IRNAK+RLQEKGITPS+DRIAESLNMS+KKV+NATEA+SKVFSLDR+AFPSLNGLPGETH
Sbjct: 361 IRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETH 420

Query: 422 HSYIADNRLENNPWHGTDTWILKAEVNKLINLTLGDREREIIRLYHGLDNECLTWEEISK 481
           HSYIAD RLENNPWHG D   LK EV+KLI+ TLG+RE+EIIRLY+GLD ECLTWE+ISK
Sbjct: 421 HSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISK 480

Query: 482 RIGLSRERVRQVGLVALEKLKKAAKTRKMEAMLLKH 509
           RIGLSRERVRQVGLVALEKLK AA+ RKMEAM+LK+
Sbjct: 481 RIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502

[Close]

BLAST of Spg001614.1 vs. TAIR 10
Match: AT1G64860.2 (sigma factor A )

HSP 1 Score: 629.8 bits (1623), Expect = 1.9e-180
Identity = 334/482 (69.29%), Postives = 394/482 (81.74%), Query Frame = 0


Query: 2   MATAAIIGLGAAKRLLNSSSYYSDFTEKVLYANDHRLGQSQVSPTKSVVIAKGSANFSPS 61
           MATAA+IGL   KRLL+SS Y+SD TEK L  NDH   Q  ++ TKS + AK ++N+SPS
Sbjct: 1   MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 62  YPSSNRHSQCIKAVKEHVDTPSSPTAEPWIHNTTIWE------DEETDLKCTVEALLLLQ 121
           +PSSNRH+Q  KA+KE VD  S  T +PW+ N T  E      D++  +  +VEA+LLLQ
Sbjct: 61  FPSSNRHTQSAKALKESVDVAS--TEKPWLPNGTDKELEEECYDDDDLISHSVEAILLLQ 120

Query: 122 KSMLEKQWNLSFEQTVSTDAPRGKT--EKKVPV-TCSGVSARQRRISSKRKIQSKHVFMA 181
           KSMLEK WNLSFE+ VS++ P   T  +KK+PV TCSG+SARQRRI +K+K    HV   
Sbjct: 121 KSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHV--- 180

Query: 182 QPKISKQLRPTISPELLQNRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKIRLK 241
                      +S      +++GYVKG++SE++LSH EVVRLSKKIK GL L++ K RLK
Sbjct: 181 ---------KAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLK 240

Query: 242 ERLGCEPSEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMA 301
           +RLGCEPS++QLA+SLKISRAEL++ +MEC LAREKLAMSNVRLVMSIAQRYDN+GAEM+
Sbjct: 241 DRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMS 300

Query: 302 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGL 361
           DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHERLGL
Sbjct: 301 DLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGL 360

Query: 362 IRNAKVRLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETH 421
           IRNAK+RLQEKGITPS+DRIAESLNMS+KKV+NATEA+SKVFSLDR+AFPSLNGLPGETH
Sbjct: 361 IRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGETH 420

Query: 422 HSYIADNRLENNPWHGTDTWILKAEVNKLINLTLGDREREIIRLYHGLDNECLTWEEISK 475
           HSYIAD RLENNPWHG D   LK EV+KLI+ TLG+RE+EIIRLY+GLD ECLTWE+ISK
Sbjct: 421 HSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDISK 468

[Close]

BLAST of Spg001614.1 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 162.9 bits (411), Expect = 6.6e-40
Identity = 111/310 (35.81%), Postives = 175/310 (56.45%), Query Frame = 0


Query: 202 SEELLSHAEVVRLSKKIKVGLALEERKIRLKERLGCEPSEDQLAISLKISRAELRSRVME 261
           S +LL+  E   LS  I+  L LE  +  L ER G +P+  Q A +  + +  LR R+  
Sbjct: 269 SSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHH 328

Query: 262 CSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYV 321
            +L ++K+  SN+RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD++KGFK STY 
Sbjct: 329 GTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYA 388

Query: 322 YWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVRL-QEKGITPSLDRIAESLNMSK 381
           +WWI+Q V ++L + SR +RLP H+ E    ++ A+ +L  E G  P  + IAE+  +S 
Sbjct: 389 HWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSM 448

Query: 382 KKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWI---LKAE 441
           K++     +     SLD++   + N  P E     IAD     +     D  I   ++ +
Sbjct: 449 KRLMAVLLSPKPPRSLDQKIGMNQNLKPSEV----IADPEAVTS----EDILIKEFMRQD 508

Query: 442 VNKLINLTLGDREREIIRLYHGL-DNECLTWEEISKRIGLSRERVRQVGLVALEKLKKAA 501
           ++K+++ +LG RE+++IR   G+ D    T +EI + +G+SRERVRQ+   A  KLK   
Sbjct: 509 LDKVLD-SLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKK 568

Query: 502 KTRKMEAMLL 507
           +   ++  L+
Sbjct: 569 RNNHLQQYLV 569

[Close]

BLAST of Spg001614.1 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 149.8 bits (377), Expect = 5.8e-36
Identity = 101/313 (32.27%), Postives = 172/313 (54.95%), Query Frame = 0


Query: 193 LKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKIRLKERLGCEPSEDQLAISLKISR 252
           L+ ++ G  +++LL+  E   L   I+  L LE+ K +L+ + GCEP+  + A ++ IS 
Sbjct: 235 LQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISS 294

Query: 253 AELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSS 312
             L+S +     +REKL  +N+RLV+ IA++Y N G    DL+Q G +GL++ +EKF   
Sbjct: 295 PVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQ 354

Query: 313 KGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNA-KVRLQEKGITPSLDR 372
            G + +TY YWWIRQ + +++ +NSRT+RLP +++  LG +  A K  +QE    PS + 
Sbjct: 355 SGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEE 414

Query: 373 IAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDT 432
           +A  + +S +K+           S+ +  +   +     T      D+ +E  P      
Sbjct: 415 LAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQD----TTFQEITPDSGIE-TPTMSVGK 474

Query: 433 WILKAEVNKLINLTLGDREREIIRLYHGLD-NECLTWEEISKRIGLSRERVRQVGLVALE 492
            +++  V  L+N+ L  +ER II+L  G+D  +  +  EI +  GLS+ERVRQ+   AL 
Sbjct: 475 QLMRNHVRNLLNV-LSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALY 534

Query: 493 KLKKAAKTRKMEA 504
           +LK+   +  + A
Sbjct: 535 RLKQNMNSHGLHA 541

[Close]

BLAST of Spg001614.1 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 143.3 bits (360), Expect = 5.4e-34
Identity = 116/345 (33.62%), Postives = 166/345 (48.12%), Query Frame = 0


Query: 159 SSKRKIQSKHVFMAQPKISKQLRPTISPELLQNRLKGYVKGLVSEELLSHAEVVRLSKKI 218
           S KR+ + +   +   ++  +       E     +   V G      LS  E V+L   +
Sbjct: 76  SEKRRKRRRRRRVGYERLEPEEEENAGVEAEAETISVPVVGASRSGFLSRLEEVQLCLYL 135

Query: 219 KVGLALEERKIRLKERLGCEPSEDQLAISL--------KISRAELRSRVMECSLAREKLA 278
           K G  L        E LG    E+++   L        K S  E+  R  E   AREK+ 
Sbjct: 136 KEGAKL--------ENLGTSVEENEMVSVLLASGRGKKKRSANEILCRRKE---AREKIT 195

Query: 279 MSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVS 338
               RLV+SIA  Y   G  + DL+Q G IGLLRG E+FD  +G+K+STYVYWWI+Q + 
Sbjct: 196 RCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAIL 255

Query: 339 RALVENSRTLRLPTHLHERLGLIRNAKVRLQEK-GITPSLDRIAESLNMSKKKVKNATEA 398
           RA+   SR ++LP  + E    +  A   L  K    PS + IAE LN++   V+ A E 
Sbjct: 256 RAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVER 315

Query: 399 ISKVFSLDREAFPSLNGLPGETHHSYIADNRLENNPWHGTDTWILKAEVNKLINLTLGDR 458
                SLDR A  +     G      I     E  P        +K E+ +L+  +L  R
Sbjct: 316 SRSPVSLDRVASQN-----GRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLG-SLTAR 375

Query: 459 EREIIRLYHGLDNEC-LTWEEISKRIGLSRERVRQVGLVALEKLK 494
           E  ++ LY GL+ E  +++EEI K + LSRERVRQ+  +AL+KL+
Sbjct: 376 ESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLR 403

The following BLAST results are available for this feature:

BLAST of Spg001614.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902049.1	5.6e-275	97.64	RNA polymerase sigma factor sigA [Benincasa hispida]	[more]
XP_016902935.1	1.0e-268	95.68	PREDICTED: RNA polymerase sigma factor sigA [Cucumis melo] >KAA0066336.1 RNA pol...	[more]
KAG6605170.1	4.3e-267	94.69	RNA polymerase sigma factor sigA, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_023533104.1	7.4e-267	94.49	RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo] >XP_023533105...	[more]
XP_023006851.1	6.2e-266	94.29	RNA polymerase sigma factor sigA-like [Cucurbita maxima] >XP_023006852.1 RNA pol...	[more]

BLAST of Spg001614.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24629	6.6e-194	70.35	RNA polymerase sigma factor sigA OS=Arabidopsis thaliana OX=3702 GN=SIGA PE=1 SV...	[more]
Q0J7T6	1.1e-129	51.04	RNA polymerase sigma factor sigA OS=Oryza sativa subsp. japonica OX=39947 GN=SIG...	[more]
P26683	8.4e-40	34.24	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
P38023	1.4e-39	34.44	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
O22056	9.3e-39	35.81	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]

BLAST of Spg001614.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BME8	5.0e-269	95.68	RNA polymerase sigma factor sigA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S4E4N5	5.0e-269	95.68	RNA polymerase sigma factor sigA OS=Cucumis melo OX=3656 GN=LOC103501092 PE=3 SV...	[more]
A0A6J1KWY7	3.0e-266	94.29	RNA polymerase sigma factor sigA-like OS=Cucurbita maxima OX=3661 GN=LOC11149952...	[more]
A0A6J1D604	8.8e-266	94.29	RNA polymerase sigma factor sigA OS=Momordica charantia OX=3673 GN=LOC111017241 ...	[more]
A0A6J1G739	3.7e-264	93.70	RNA polymerase sigma factor sigA-like OS=Cucurbita moschata OX=3662 GN=LOC111451...	[more]

BLAST of Spg001614.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64860.1	4.7e-195	70.35	sigma factor A	[more]
AT1G64860.2	1.9e-180	69.29	sigma factor A	[more]
AT1G08540.1	6.6e-40	35.81	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	5.8e-36	32.27	RNApolymerase sigma-subunit F	[more]
AT5G13730.1	5.4e-34	33.62	sigma factor 4	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 317..325 score: 64.52 coord: 466..481 score: 48.75 coord: 481..492 score: 46.67 coord: 446..458 score: 37.22 coord: 293..306 score: 49.68
IPR000943	RNA polymerase sigma-70	PROSITE	PS00715	SIGMA70_1	coord: 293..306
None	No IPR available	GENE3D	1.10.601.10	RNA Polymerase Primary Sigma Factor	coord: 99..339 e-value: 1.8E-32 score: 115.2
None	No IPR available	PANTHER	PTHR30603:SF14	RNA POLYMERASE SIGMA FACTOR SIGA	coord: 2..508
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 2..508
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 435..493 e-value: 2.27199E-7 score: 45.5582
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 349..419 e-value: 3.0E-11 score: 43.3
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 340..390 e-value: 5.9E-7 score: 31.5
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 424..502 e-value: 2.8E-20 score: 74.0
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 445..494 e-value: 1.4E-10 score: 40.5
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 271..338 e-value: 1.5E-16 score: 59.9
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 265..495 e-value: 5.8E-26 score: 89.0
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 192..339
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 341..397
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 421..498

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg001614	Spg001614	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg001614.1-five_prime_utr	Spg001614.1-five_prime_utr-scaffold8:33057426..33057751	five_prime_UTR
Spg001614.1-five_prime_utr	Spg001614.1-five_prime_utr-scaffold8:33058088..33058251	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg001614.1-cds	Spg001614.1-cds-scaffold8:33058252..33058940	CDS
Spg001614.1-cds	Spg001614.1-cds-scaffold8:33059183..33059381	CDS
Spg001614.1-cds	Spg001614.1-cds-scaffold8:33059468..33059560	CDS
Spg001614.1-cds	Spg001614.1-cds-scaffold8:33060600..33060728	CDS
Spg001614.1-cds	Spg001614.1-cds-scaffold8:33060889..33060942	CDS
Spg001614.1-cds	Spg001614.1-cds-scaffold8:33061040..33061117	CDS
Spg001614.1-cds	Spg001614.1-cds-scaffold8:33061228..33061290	CDS
Spg001614.1-cds	Spg001614.1-cds-scaffold8:33061423..33061535	CDS
Spg001614.1-cds	Spg001614.1-cds-scaffold8:33061623..33061731	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg001614.1-three_prime_utr	Spg001614.1-three_prime_utr-scaffold8:33061732..33062040	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg001614.1	Spg001614.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:0071461	cellular response to redox state
biological_process	GO:0080005	photosystem stoichiometry adjustment
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity