Spg001534.1 (mRNA) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTGGGCGTGGAAAGGGAGGCAAGGGCTTGGGAAAGGGCGGAGCAAAGCGTCACAGGAAGGTTTTGAGGGATAACATCCAGGGCATTACCAAGCCTGCAATTCGCCGTTTGGCCCGTAGAGGCGGCGTCAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGCGTTTTGAAGATCTTCCTTGAGAATGTCATTCGCGATGCTGTCACCTATACTGAGCACGCTAGGAGGAAGACGGTGACTGCCATGGATGTGGTCTATGCATTGAAGAGGCAGGGAAGGACTCTGTACGGTTTCGGAGGTTAGGTTGCAGATTGGTTGTATGAATGGTTGTAGATCTTGGATATTGACCTGGTTTCTCACAGGCTTCGTTGTTACTTTTAATAGATTTGCCCTAGTTTGTTCTCTAATTTTCCGATAATGAAATGAAGGATTATATTGCGCCATGGTTTTTTCCCTCAACCTATTTCATTCTGTCATGATATATATTTGGACTACGAAAATCTACCAAGGTTCCTGAGGAGATACAGAATTGAATTTAAAGGTGAACGGAATTAATAATTTTGTGTTTAATGTATATAGTTGGCATAAAATAGATAGCAATTGTTCTCTAATTATATCCAGTTCAACAATATTTTGGTTTGGTGGAATTTGGGAACCACGGGCTTTCATTGACTGTCGAGGTATTAGGATTTGACCTGGAAAATAGGTTGAAGTAATTGATCTAGAAGCTGGGCTAGTTATCCATGGTAATTTCCTAGCTTCTATTTCAGATGAATGTGAATCTAAGTTTGCAAATTCGTTTATTAAATTGTAAGCTACTGGGATTAGGTATGGTTGTTCACTTCATTAGAAGAAAGATCTTCTGTTCGGAGATTGTGGCTTTTCTCAGAAATTTCTTGATGTCTATTTGATATTATAGCTTAGACCTGACTTGGTTGCATGGCTTGATTAAGGTTTACACCAGTGAATTACATAGCAAGAAGAGATATTATAGCTTATTCCATCGTCTGTTTGCAAATGCTAAGGAATAG ATGTCTGGGCGTGGAAAGGGAGGCAAGGGCTTGGGAAAGGGCGGAGCAAAGCGTCACAGGAAGGTTTTGAGGGATAACATCCAGGGCATTACCAAGCCTGCAATTCGCCGTTTGGCCCGTAGAGGCGGCGTCAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGCGTTTTGAAGATCTTCCTTGAGAATGTCATTCGCGATGCTGTCACCTATACTGAGCACGCTAGGAGGAAGACGGTGACTGCCATGGATGTGGTCTATGCATTGAAGAGGCAGGGAAGGACTCTGTACGGTTTCGGAGGCTTCGTTGTTGAAGTAATTGATCTAGAAGCTGGGCTAGTTATCCATGGTAATTTCCTAGCTTCTATTTCAGATGAATGTGAATCTAAGTTTGCAAATTCGTTTATTAAATTCTTAGACCTGACTTGGTTGCATGGCTTGATTAAGGTTTACACCAGTGAATTACATAGCAAGAAGAGATATTATAGCTTATTCCATCGTCTGTTTGCAAATGCTAAGGAATAG ATGTCTGGGCGTGGAAAGGGAGGCAAGGGCTTGGGAAAGGGCGGAGCAAAGCGTCACAGGAAGGTTTTGAGGGATAACATCCAGGGCATTACCAAGCCTGCAATTCGCCGTTTGGCCCGTAGAGGCGGCGTCAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGCGTTTTGAAGATCTTCCTTGAGAATGTCATTCGCGATGCTGTCACCTATACTGAGCACGCTAGGAGGAAGACGGTGACTGCCATGGATGTGGTCTATGCATTGAAGAGGCAGGGAAGGACTCTGTACGGTTTCGGAGGCTTCGTTGTTGAAGTAATTGATCTAGAAGCTGGGCTAGTTATCCATGGTAATTTCCTAGCTTCTATTTCAGATGAATGTGAATCTAAGTTTGCAAATTCGTTTATTAAATTCTTAGACCTGACTTGGTTGCATGGCTTGATTAAGGTTTACACCAGTGAATTACATAGCAAGAAGAGATATTATAGCTTATTCCATCGTCTGTTTGCAAATGCTAAGGAATAG MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGFVVEVIDLEAGLVIHGNFLASISDECESKFANSFIKFLDLTWLHGLIKVYTSELHSKKRYYSLFHRLFANAKE Homology
BLAST of Spg001534.1 vs. NCBI nr
Match: RYR11711.1 (hypothetical protein Ahy_B04g069232 isoform C [Arachis hypogaea]) HSP 1 Score: 205.3 bits (521), Expect = 4.3e-49 Identity = 113/144 (78.47%), Postives = 119/144 (82.64%), Query Frame = 0
BLAST of Spg001534.1 vs. NCBI nr
Match: KAF5764084.1 (putative histone H4, histone-fold, CENP-T/Histone H4, histone [Helianthus annuus]) HSP 1 Score: 203.4 bits (516), Expect = 1.6e-48 Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0
BLAST of Spg001534.1 vs. NCBI nr
Match: PPD92129.1 (hypothetical protein GOBAR_DD10956 [Gossypium barbadense]) HSP 1 Score: 203.0 bits (515), Expect = 2.1e-48 Identity = 106/114 (92.98%), Postives = 108/114 (94.74%), Query Frame = 0
BLAST of Spg001534.1 vs. NCBI nr
Match: XP_016448403.1 (PREDICTED: uncharacterized protein LOC107773508 [Nicotiana tabacum]) HSP 1 Score: 203.0 bits (515), Expect = 2.1e-48 Identity = 109/130 (83.85%), Postives = 114/130 (87.69%), Query Frame = 0
BLAST of Spg001534.1 vs. NCBI nr
Match: XP_001367380.2 (PREDICTED: uncharacterized protein LOC100018638 [Monodelphis domestica]) HSP 1 Score: 202.6 bits (514), Expect = 2.8e-48 Identity = 104/113 (92.04%), Postives = 108/113 (95.58%), Query Frame = 0
BLAST of Spg001534.1 vs. ExPASy Swiss-Prot
Match: P62785 (Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2) HSP 1 Score: 199.5 bits (506), Expect = 3.1e-50 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of Spg001534.1 vs. ExPASy Swiss-Prot
Match: P59259 (Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2) HSP 1 Score: 199.5 bits (506), Expect = 3.1e-50 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of Spg001534.1 vs. ExPASy Swiss-Prot
Match: Q6PMI5 (Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3) HSP 1 Score: 199.5 bits (506), Expect = 3.1e-50 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of Spg001534.1 vs. ExPASy Swiss-Prot
Match: Q6WZ83 (Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3) HSP 1 Score: 199.5 bits (506), Expect = 3.1e-50 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of Spg001534.1 vs. ExPASy Swiss-Prot
Match: Q6LAF3 (Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3) HSP 1 Score: 199.5 bits (506), Expect = 3.1e-50 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of Spg001534.1 vs. ExPASy TrEMBL
Match: A0A444ZC00 (Multifunctional fusion protein OS=Arachis hypogaea OX=3818 GN=Ahy_B04g069232 PE=3 SV=1) HSP 1 Score: 205.3 bits (521), Expect = 2.1e-49 Identity = 113/144 (78.47%), Postives = 119/144 (82.64%), Query Frame = 0
BLAST of Spg001534.1 vs. ExPASy TrEMBL
Match: A0A251S7R1 (Histone H4 OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr15g0476921 PE=3 SV=1) HSP 1 Score: 203.4 bits (516), Expect = 8.0e-49 Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0
BLAST of Spg001534.1 vs. ExPASy TrEMBL
Match: A0A1S3Y8K5 (Histone H4 OS=Nicotiana tabacum OX=4097 GN=LOC107773508 PE=3 SV=1) HSP 1 Score: 203.0 bits (515), Expect = 1.0e-48 Identity = 109/130 (83.85%), Postives = 114/130 (87.69%), Query Frame = 0
BLAST of Spg001534.1 vs. ExPASy TrEMBL
Match: A0A6P5L8A9 (Histone H4 OS=Phascolarctos cinereus OX=38626 GN=LOC110216652 PE=3 SV=1) HSP 1 Score: 202.2 bits (513), Expect = 1.8e-48 Identity = 107/126 (84.92%), Postives = 114/126 (90.48%), Query Frame = 0
BLAST of Spg001534.1 vs. ExPASy TrEMBL
Match: A0A1U8M305 (Histone H4 OS=Gossypium hirsutum OX=3635 GN=LOC107932445 PE=3 SV=1) HSP 1 Score: 202.2 bits (513), Expect = 1.8e-48 Identity = 118/181 (65.19%), Postives = 137/181 (75.69%), Query Frame = 0
BLAST of Spg001534.1 vs. TAIR 10
Match: AT1G07660.1 (Histone superfamily protein ) HSP 1 Score: 199.5 bits (506), Expect = 2.2e-51 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of Spg001534.1 vs. TAIR 10
Match: AT1G07820.1 (Histone superfamily protein ) HSP 1 Score: 199.5 bits (506), Expect = 2.2e-51 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of Spg001534.1 vs. TAIR 10
Match: AT1G07820.2 (Histone superfamily protein ) HSP 1 Score: 199.5 bits (506), Expect = 2.2e-51 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of Spg001534.1 vs. TAIR 10
Match: AT2G28740.1 (histone H4 ) HSP 1 Score: 199.5 bits (506), Expect = 2.2e-51 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of Spg001534.1 vs. TAIR 10
Match: AT3G45930.1 (Histone superfamily protein ) HSP 1 Score: 199.5 bits (506), Expect = 2.2e-51 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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