Spg000607.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg000607.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Gag/pol protein
Location	scaffold8: 44615690 .. 44619781 (+)
Sequence length	372
RNA-Seq Expression	Spg000607.1
Synteny	Spg000607.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCTTAATATTGTACGTGGGATCATATTTGAGTTTGGTGGTAAATCGACGGCGGAGAGAGGTTGTGAGAAGAGCCGTCTTCATGCGAAATCCAGATTCCACGTGGGCATCTTCTATTGGTTGTCCAGAATGTTGCGGATGGATGACCTGTCACCAAAGTTTTCGGGGTTTTTTGGAAAAGTAGGAAAAAAATTAAAACAAATTAGAGAAAAAGGGGAAGTTTGAAAGAATTTAGAAATATAAGGTGTCGCGTCCGTTGAAGAGACGCGACACCTTAAAATTTTGAAGAGACGTGACCAGTGCCTTTTTTTTTTTTTTTAAACGCCGGTAGACGCGACCCAAGCCGCCACGTGTCACGCCCATGTTTTTTGTAATTTTCGTTTACAGTTTTTTTTTTTTTTTTTTTTTTTTAAAAGACCAAATGATTTTTTTTAACTAAATATATTTAAACCAAATGACATTTAGAAAAAGATTTTTTTAAAAAAAAAAACCAAATGATTTTTTTTTGTTTGTTTAACCATATATATTTTAAACCAAATGATATTTAAAAAAAAAAACAACCAATGATTATATTTTTTTTTGTTTAACTAATAAAAATTTATAAAAAAAAAATAACTTATAAATTAAATATATAAATTGTATCTTTAGAATGAATTGTTATGGACCATCTATTATAAAATTACGAATCGAATCTACTAAAAAATCAAAACAGAAAGCAAAAAAAATGAATCTAATAATGTATCTAATTATCTTATTCAAAAAAGAAGTTAACAATATAATATTAATTTAATACTTATAAAAACAATTGTAATTTTTTGTTTTAATATGTAATTAGAAAATTGAATATATTCTTCCCCTCCTTAAAAAAAGGTATTTTCGTGGACATTTGAGTTTCAAATATCTTGCAATTTTAAAGAATTGAATCTTGCGTTTAGATCGGATTTAAAGATAAAATCAATAAAGATATGGAGATATGGAGATTGAGGTATATGAACACTGGTTAAAAAAAGAAAAAAAAAACGATTTCTAAAAAAATGAAAAGAGAATGTTAAGAGATCGGTTTTTTTTTTTTCCTTTTTTTATAAGTTATGGAGATTAAGGTATATGAACACTGGTTAACTTCGATTCGTAATTTTATAATAGATGGTCCATAACAATTCATTCTAAAGATACAATTTATATATTTAATTTATAAGTTAGTTTTTTTTTATAAATTTTTATTAGTTAAACAAAAAAAAAATATAATCATTGGTTGTTTTTTTTTTTAATATCATTTGGTTTAAAATATATATAGTTAAACAAAAAAAAATCATTTGGTTTTTTTTTTAAAAAAAAAAAATCTTTTTTTAAATGTCATTTGGTTTAAATATATTTAGTTAAAAAAAAATCATTTGGTCTTTAAAAAAAAAAAAAAAAAAAAAAACTGTAAACGAAAATTACAGAAAACATGGGCGTGACACGTGGCGGCTTGGTCGCGTCTCTTCAAGAGACGCGACCCACCGGCGTTTCAAAAAAAAAAAGGCACTAGTCGCGTCTCTTCTAGAGACGCGACCCTCAAAATTTTAAGGTGCCGCGTCTGTTGAAGAGACGCGACACCTTATATTTCTAAACGCGACACCTTATATTTCTAAACACTTTCAAACTTACCTTTTTTCTCTAATTTCTTTTAATTTTTTTCCTACTTTTCCAAAAAACCCAAGTTTTCGGCTTTTGAATAAATTAGAATTGAGATGTGGTTAAAAAACTCTTGATAATTGGACTTGGAAGTAGTAATTCGTTCCTAGAACAATTTTTTTTTTTTTTTAATATCAACATATTTGGATTGATTTTATTTTAGTTTTTTTTTTTTTAAGATTTTATTTTAGTTTTTATACTTTTAAAGTTACAAATTTAATCACCATATTATTATGATTAGTTTGAAGTTCATTTTTATCCTACTAAAAAAATTTATTTTTTTATCAAAATTGGTTAAACGATGATAATAATTTTCATGCAATAAAATACACGTCTGAGTATGTGTTCAAAATTTTATAGATAAAATATTGATAGTAACCATAATTTAAGGAAAAAAAAAAAAAAAGTTCAACAATGTACTAATCGTTAGGACTAGTTTTAAGATTATATAGAAAGGACAATGACTAAGTTTGGATGCTTAAAAATATATTTAACAGTGCACATAATGGTATTTTTATTATTTTTAAACTTGTATGTAACCATTTGATTAGCATACTTTAAAGTAACGATTTAATCCTTACCATGAAAAAACTTATCACCGAAATGAAGAGTAGTGATTTACTTGTTTAGTTCACTAACTCATTTTGTCCATGGCAATCAATCTACGTATTTTAAAATAAATAACTTAAATATTAACGACAATTTATCATGATTTTAATTAAAATCATTGGAATTTTGAAGCATTAAAACCAAAATATTACAAAGTGATATTTAGGAACTAAATTATTTTAAATTTGAAGAATGCAATAACTAAGTCATTATGAATCAGAGCTTTTGAACTAAAATGTTATCGTAGTTAAAATATAGGACCAATTATGTATTTTAACTGGTCTGTAGGCTTCTACTGCGTTAGAGATTTCAACCCTACATCATGAGGCTACGATCACTGGACGCGTGATCATGGAGTCGTTGCAAGAAATGTTTGGGCAGATGTCCACTCAGATCCGGCACGAGGCCTTCAAATACGTTTACAATGTACGCATTAAGGAGGGGACAATCAATTCATGGGGGAACACGTTCTCGATCTGATGGTCCACTTCAATGTGCCCAAAGATAATCAGGACAGTAATGAACGTGCATATTCAGGAATCTTTTATTCTTGAATCTCTTTCGAAGGAGGGGCAATGACTCCATGATTTCAAGTATTGTTTTGAACAATGTGTTTTTGTCCTTGTTTTTTAAAATTAAGTTTGTGTGTAGTTTATTGTTTTCTAAAATATAATGTTTAAATCATAACTAGATTTAAAAAAACAGGCACACATTGGGAGGGGGACTAAGATTTGTTGTATAAAATTGTTATTGGATCTAAAATAATAATAATTTGTTTCGATTAACATAGAGTAAGGTGACATTTGCCAATTCGTTGTACTTTTTCCTTAAATATTGTTTTAAGTTCTTGTTTAACTGATTTTTTGTTAACACTTTTATTTTTATTTTTTATTCTGTAGTTGGTAACAACGAGCTAAAAATACACATGTAATGGAATGAAAAAAAAAAATACACATATAATTTTTTATTTATTTATTATTATTATTGTTATTGTTATTATTATTATTATATTTTTTTTTATTCTCATTTGTATAACTCATTTAATTATATTGGGTGAAGTTGATCGTAAATGCCAAAACGAGCATAGCTCATAGGTAATTGACACCTACCATTGACCAATAGGTCAGAGTTCGAGTCATCCACCCCAAATGTTGAACTAAAAAAAAAGTTGGTTGTAAATACAACTAGTTAGTTTGACTATTTACTGTAATATATATATATATAATTATTATTTCTTAATATCGGTAGTTGAGATAAGACTGTAAAATTTACGAAACTCATCCTTATACACAATATTAATGTACTTTAATCTAATTATCAAATGCAGTGTGTATTGGTCAATGTAGGTTTAACTCAACGTTAATCAACATGTACCATTGACCAAGAGGTCAGAGTTTTGAATCACTCACCTCTTCCAAAGTTGTTGAACTAAAAAAAATAAAAAATAGAATCTATCTTTTTTTTCACACGAGCTACATGTAAATTGTCTTATTTGTTAGCAACACTGACAAACTACCAAGGAAAATGACTAACGGAATAATTGGATCATTTATATGGAAACTACATCAACTTGTTTATGAGTTAGATATTGTTGATATTTGTTATGGTTTGCACGAAGCACAATTGATGTCAAACGTGTTCGCCAATGAAATAAATATCTCAGGTTGAGTTCCCATTTCTAACAAAAGTTCCATCTTGGGGGAACATGGAGGGTAAAGACATGGAAAACTGATATCAATTTGAAATATTTTGCAGTATAGCTCTGCTCTCAGAATGGATGCAAGGAAAATGGATAACGATCAATAG

mRNA sequence

ATGTGGCTTAATATTGTACGTGGGATCATATTTGAGTTTGGTGGTAAATCGACGGCGGAGAGAGGTTGTGAGAAGAGCCGTCTTCATGCGAAATCCAGATTCCACGTGGGCATCTTCTATTGGTTGTCCAGAATGTTGCGGATGGATGACCTGTCACCAAAGTTTTCGGGGTTTTTTGGAAAAGCTTCTACTGCGTTAGAGATTTCAACCCTACATCATGAGGCTACGATCACTGGACGCGTGATCATGGAGTCGTTGCAAGAAATGTTTGGGCAGATGTCCACTCAGATCCGGCACGAGGCCTTCAAATACGTTTACAATTATAGCTCTGCTCTCAGAATGGATGCAAGGAAAATGGATAACGATCAATAG

Coding sequence (CDS)

ATGTGGCTTAATATTGTACGTGGGATCATATTTGAGTTTGGTGGTAAATCGACGGCGGAGAGAGGTTGTGAGAAGAGCCGTCTTCATGCGAAATCCAGATTCCACGTGGGCATCTTCTATTGGTTGTCCAGAATGTTGCGGATGGATGACCTGTCACCAAAGTTTTCGGGGTTTTTTGGAAAAGCTTCTACTGCGTTAGAGATTTCAACCCTACATCATGAGGCTACGATCACTGGACGCGTGATCATGGAGTCGTTGCAAGAAATGTTTGGGCAGATGTCCACTCAGATCCGGCACGAGGCCTTCAAATACGTTTACAATTATAGCTCTGCTCTCAGAATGGATGCAAGGAAAATGGATAACGATCAATAG

Protein sequence

MWLNIVRGIIFEFGGKSTAERGCEKSRLHAKSRFHVGIFYWLSRMLRMDDLSPKFSGFFGKASTALEISTLHHEATITGRVIMESLQEMFGQMSTQIRHEAFKYVYNYSSALRMDARKMDNDQ

Homology

[Close]

BLAST of Spg000607.1 vs. NCBI nr
Match: KAA0046415.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 3.9e-04
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 67  EISTLHHEATITGRVIMESLQEMFGQMSTQIRHEAFKYVYN 108
           E+  + HE+ +T R IM+SLQEMFGQ S QI+H+A KY+YN
Sbjct: 79  EVLAMKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYN 119

[Close]

BLAST of Spg000607.1 vs. NCBI nr
Match: KAA0066490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 8.6e-04
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 67  EISTLHHEATITGRVIMESLQEMFGQMSTQIRHEAFKYVYN 108
           E+    HE+ +T R IM+SLQEMFGQ S QI+H+A KY+YN
Sbjct: 79  EVLAKKHESVLTAREIMDSLQEMFGQASYQIKHDALKYIYN 119

[Close]

BLAST of Spg000607.1 vs. NCBI nr
Match: KAA0050670.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 8.6e-04
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 67  EISTLHHEATITGRVIMESLQEMFGQMSTQIRHEAFKYVYN 108
           E+    HE+ +TGR IM+SLQEMFGQ S QI+H+A  Y+YN
Sbjct: 79  EVLAKKHESMLTGREIMDSLQEMFGQASYQIKHDALNYIYN 119

[Close]

BLAST of Spg000607.1 vs. ExPASy TrEMBL
Match: A0A5A7TYF5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G001600 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-04
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 67  EISTLHHEATITGRVIMESLQEMFGQMSTQIRHEAFKYVYN 108
           E+  + HE+ +T R IM+SLQEMFGQ S QI+H+A KY+YN
Sbjct: 79  EVLAMKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYN 119

[Close]

BLAST of Spg000607.1 vs. ExPASy TrEMBL
Match: A0A5A7VH46 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G00280 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.2e-04
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 67  EISTLHHEATITGRVIMESLQEMFGQMSTQIRHEAFKYVYN 108
           E+    HE+ +T R IM+SLQEMFGQ S QI+H+A KY+YN
Sbjct: 79  EVLAKKHESVLTAREIMDSLQEMFGQASYQIKHDALKYIYN 119

[Close]

BLAST of Spg000607.1 vs. ExPASy TrEMBL
Match: A0A5A7U676 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G001530 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.2e-04
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 67  EISTLHHEATITGRVIMESLQEMFGQMSTQIRHEAFKYVYN 108
           E+    HE+ +TGR IM+SLQEMFGQ S QI+H+A  Y+YN
Sbjct: 79  EVLAKKHESMLTGREIMDSLQEMFGQASYQIKHDALNYIYN 119

[Close]

BLAST of Spg000607.1 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.5e-04
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 67  EISTLHHEATITGRVIMESLQEMFGQMSTQIRHEAFKYVYN 108
           E+    HE+ +T R IM+SLQEMFGQ S QI+H+A KY+YN
Sbjct: 79  EVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYN 119

[Close]

BLAST of Spg000607.1 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.5e-04
Identity = 24/41 (58.54%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 67  EISTLHHEATITGRVIMESLQEMFGQMSTQIRHEAFKYVYN 108
           E+    HE+ +T R IM+SLQEMFGQ S QI+H+A KY+YN
Sbjct: 79  EVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYN 119

The following BLAST results are available for this feature:

BLAST of Spg000607.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046415.1	3.9e-04	58.54	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0066490.1	8.6e-04	58.54	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0050670.1	8.6e-04	58.54	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg000607.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg000607.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TYF5	1.9e-04	58.54	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G0016...	[more]
A0A5A7VH46	4.2e-04	58.54	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G00280...	[more]
A0A5A7U676	4.2e-04	58.54	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G0015...	[more]
A0A5A7SMH8	5.5e-04	58.54	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	5.5e-04	58.54	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]

BLAST of Spg000607.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg000607	Spg000607	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg000607.1-cds	Spg000607.1-cds-scaffold8:44615690..44615872	CDS
Spg000607.1-cds	Spg000607.1-cds-scaffold8:44618264..44618401	CDS
Spg000607.1-cds	Spg000607.1-cds-scaffold8:44619731..44619781	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg000607.1	Spg000607.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding