Sgr023891.1 (mRNA) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr023891.1
Type	mRNA
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	GATA type zinc finger transcription factor family protein
Location	tig00001047: 1192469 .. 1194247 (-)
Sequence length	570
RNA-Seq Expression	Sgr023891.1
Synteny	Sgr023891.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTCATTGGCACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTACCCTGTGGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAGTCTTGCTTCAAATGCACCCACTGCAAAGGGACTCTAAAGGTATTGCACTGTGTTTATTGGGCTGGATTCTGATCTTTTAAGAATGCTAAACCACCTCTAAACCCAAAATCTTAGGATATATTTATTCTTTTATTTATATTTTATTAACACTCTCCCTCACTTGTGGGCTTGGAAATTAAGGTAAGATCCAACAAGTGACCATCAATATTGATTGGGAAGGAAATGACATCATAGGAGCTAGAACTAAGAAGCTCTAATGCTATATTAAATCACAACTCAGAGGCTAGAGTATATTTATTCCTTTACGTGTATTGTTAACAATGCTTTCTGCTTAGTGTTATACAGGGAATCTAGGGAATCTAATGCATCTTGCCAAACTATTTTATAAAGGAAATCTAAATTTGGTATCGACTTCTGTCTCAAGTATCCATCTGTTGATATATCTATCACAAGTAAACGCAACCTAGTTTAAGGGATATATCTAAGGTTCCAAAGTATGGCTAGAATTAGGCATATGGTGTTTGACAGTGAATAAGAGCTAAAAAAAAATCTACTATAATGACTCTGGATCTTGTTCCGAACGATCACAAGAGATTTTCTAGAAGGATTGATAGGTGGTTTATGTTTTGAAAATTGGAACTCTATCATACAGTTTAACCTTGTTCTTTGCTTGCCTTCAGCTGAGCAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACAGGCAACTTCAACAAGAACTTCCAATCACGTACGTTCTTATCTTCTTCTGGATAACTTTATGTTTGGCTTCACAAAAATTTTGCCTTCACATGTTTAATTGTCTTTGATTTTTATTTTCAACAGCTGCAAAGTCAGCTGAGAAGCTAACTCCAGAGCTGGTAATTTTCCTGCTGCAATTACTTATAATTTGATCTTGAGGAGCTTTTTCCACAAGGAGATAAAATTATACAAAAAAAATGTAATGGAATTGATTCTTGTAACCACTTACTGGTTTCAGACTAGGTCACCAAGCAAAGCTGCTGGCATGTTTTCTGGGACTCAAGAAAAATGTACTACTTGTGGTAAAACTGTTTATCCACTGGAGAAGGTAATCACTTACTGAGATCTGATAAATAATTCCTTATCCTCTCTTCCCCCCCCCCCCCCCCCCACACACACACACACACACAAGAGAGAGAGAGAGAGAGAGAGAGAGATCCTTTCTTCCCTTTGTAACTTTGGAAGTCATCCAATCTATGATGCAGTGATGCATTTGCACAATCAAAGAGGTAGAATGAAAATCTGTCCCCCCCCAAACAAAAAAAAAAAAAAGATGAAAATAAAAACATACATATTTACATATGTTATATCAATTCCATGGCTATTGGTTCATAAATTTGAGATCTGTCTCAAACAAAGTTTGTAGAGGATTACATGAATCTGTTATTACAAACACTTGCAGGTAACAGTTGAAAGCCAATCCTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTGCTATATCCCCATCAAATTATGCAGCCCTAGAGGGTATTCTATATTGCAAACACCACTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACCTGATCAAGTCTGCATCCATGAAGCGTCCTGCTGCCTCTGTTCCCGAAGCTTGA

mRNA sequence

ATGTCTTTCATTGGCACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTACCCTGTGGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAGTCTTGCTTCAAATGCACCCACTGCAAAGGGACTCTAAAGCTGAGCAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACAGGCAACTTCAACAAGAACTTCCAATCACCTGCAAAGTCAGCTGAGAAGCTAACTCCAGAGCTGACTAGGTCACCAAGCAAAGCTGCTGGCATGTTTTCTGGGACTCAAGAAAAATGTACTACTTGTGGTAAAACTGTTTATCCACTGGAGAAGGTAACAGTTGAAAGCCAATCCTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTGCTATATCCCCATCAAATTATGCAGCCCTAGAGGGTATTCTATATTGCAAACACCACTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACCTGATCAAGTCTGCATCCATGAAGCGTCCTGCTGCCTCTGTTCCCGAAGCTTGA

Coding sequence (CDS)

ATGTCTTTCATTGGCACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTACCCTGTGGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAGTCTTGCTTCAAATGCACCCACTGCAAAGGGACTCTAAAGCTGAGCAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACAGGCAACTTCAACAAGAACTTCCAATCACCTGCAAAGTCAGCTGAGAAGCTAACTCCAGAGCTGACTAGGTCACCAAGCAAAGCTGCTGGCATGTTTTCTGGGACTCAAGAAAAATGTACTACTTGTGGTAAAACTGTTTATCCACTGGAGAAGGTAACAGTTGAAAGCCAATCCTATCACAAGTCCTGTTTTAAGTGCTCTCATGGAGGGTGTGCTATATCCCCATCAAATTATGCAGCCCTAGAGGGTATTCTATATTGCAAACACCACTTCTCCCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACCTGATCAAGTCTGCATCCATGAAGCGTCCTGCTGCCTCTGTTCCCGAAGCTTGA

Protein sequence

MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKPHFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCTTCGKTVYPLEKVTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMKRPAASVPEA

Homology

[Close]

BLAST of Sgr023891.1 vs. NCBI nr
Match: XP_023550254.1 (LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo])

HSP 1 Score: 389.8 bits (1000), Expect = 1.3e-104
Identity = 184/189 (97.35%), Postives = 187/189 (98.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCTTCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQ+KC TCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC+ISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           RPAASVPEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of Sgr023891.1 vs. NCBI nr
Match: XP_022939310.1 (LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939311.1 LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939312.1 LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022993072.1 LIM domain-containing protein WLIM2b [Cucurbita maxima] >XP_022993073.1 LIM domain-containing protein WLIM2b [Cucurbita maxima] >KAG7015999.1 LIM domain-containing protein WLIM2b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 388.3 bits (996), Expect = 3.9e-104
Identity = 183/189 (96.83%), Postives = 187/189 (98.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCTTCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQ+KC TCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC+ISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           RPAASVPEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of Sgr023891.1 vs. NCBI nr
Match: KAG6578438.1 (LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 387.1 bits (993), Expect = 8.6e-104
Identity = 182/189 (96.30%), Postives = 187/189 (98.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCK+CEKTVYPVEQLS DGVSYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKSCEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCTTCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQ+KC TCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC+ISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           RPAASVPEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of Sgr023891.1 vs. NCBI nr
Match: XP_004138434.1 (LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_008441430.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis melo] >XP_008441431.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis melo] >XP_011656401.1 LIM domain-containing protein WLIM2b [Cucumis sativus] >KGN45769.1 hypothetical protein Csa_005194 [Cucumis sativus])

HSP 1 Score: 386.7 bits (992), Expect = 1.1e-103
Identity = 183/189 (96.83%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCTTCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQ+KC TCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCA+SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           R AA VPEA
Sbjct: 181 RSAAPVPEA 189

[Close]

BLAST of Sgr023891.1 vs. NCBI nr
Match: XP_038884117.1 (LIM domain-containing protein WLIM2b [Benincasa hispida] >XP_038884118.1 LIM domain-containing protein WLIM2b [Benincasa hispida])

HSP 1 Score: 385.2 bits (988), Expect = 3.3e-103
Identity = 182/189 (96.30%), Postives = 185/189 (97.88%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVYPVEQLSADG+SYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYPVEQLSADGISYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCTTCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQ+KC TCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           R AA VPEA
Sbjct: 181 RSAAPVPEA 189

[Close]

BLAST of Sgr023891.1 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 1.7e-94
Identity = 165/199 (82.91%), Postives = 177/199 (88.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKCTHCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCTTCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQEKC TC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 R----------PAASVPEA 190
           R          PAASVPE+
Sbjct: 181 RSAAAAVAAGVPAASVPES 199

[Close]

BLAST of Sgr023891.1 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 1.6e-89
Identity = 153/190 (80.53%), Postives = 171/190 (90.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKC+ACEKTVYPVE LSADG+SYHK+CFKC+HCK  L+LSNYSSMEGV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKS-AEKLTPELTRSPSKAAGMFSGTQEKCTTCGKTVYPLE 120
           HFEQLFKE+G+F+KNFQSPAK   +K TPEL R+PS+ AGMFSGTQ+KC TC KTVYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASM 180
           KVTVESQ YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KRPAASVPEA 190
           KR  A+   A
Sbjct: 181 KRATAAATAA 190

[Close]

BLAST of Sgr023891.1 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.0e-70
Identity = 121/185 (65.41%), Postives = 152/185 (82.16%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KCKAC+KTVY ++ L+ +G +YHKSCF+CTHCKGTL +SNYSSM+GVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCTTCGKTVYPLEK 120
           HFEQLFKE+GN++KNFQ  A   EK    LTR+PSK +  FSGTQ+KC TC KTVYPLEK
Sbjct: 61  HFEQLFKESGNYSKNFQ--AGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VT+E +SYHK+CF+C+H GC ++ S+YA+L G+LYCK HF+QLF EKGSYNH+ ++A+  
Sbjct: 121 VTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANH 180

Query: 181 RPAAS 186
           R +AS
Sbjct: 181 RRSAS 183

[Close]

BLAST of Sgr023891.1 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 7.2e-69
Identity = 113/184 (61.41%), Postives = 152/184 (82.61%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KC  C+KTVY V+ LS +G+ YHKSCF+CTHCKGTL++SNYSSM+GVLYCK 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCTTCGKTVYPLEK 120
           HFEQLFKE+GNF+KNFQ P K+ +   PELTR+PSK + +F GTQ+KC  C KTVYPLEK
Sbjct: 61  HFEQLFKESGNFSKNFQ-PGKTEK---PELTRTPSKISSIFCGTQDKCAACEKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           + +E + +HK+CF+C+HGGC ++ S+YA+L+ +LYC+HHF+QLF EKG+Y H++++A+ +
Sbjct: 121 IQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHR 180

Query: 181 RPAA 185
           R A+
Sbjct: 181 RTAS 180

[Close]

BLAST of Sgr023891.1 vs. ExPASy Swiss-Prot
Match: Q7F9R9 (LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 7.9e-68
Identity = 121/189 (64.02%), Postives = 146/189 (77.25%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQ KC AC+KTV+ ++ L+ADGV YHK+CFKC+HCKG L + +YSSM+GVLYCK 
Sbjct: 1   MSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKT 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCTTCGKTVYPLEK 120
           HFEQLFKETG+F+K F    +S +K   EL R+PSK    FSGTQ+KC  C KTVYPLEK
Sbjct: 61  HFEQLFKETGSFSKKFAPGCRSTDK---ELARAPSKICSAFSGTQDKCAACQKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHL-IKSASM 180
           +T+E +SYHKSCFKCSHGGC ++ S+YAAL G+LYCK HF QLF EKGSYNH+  KS S 
Sbjct: 121 LTLEGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFGQLFMEKGSYNHMKKKSESQ 180

Query: 181 KRPAASVPE 189
           +     VPE
Sbjct: 181 EVLPEVVPE 186

[Close]

BLAST of Sgr023891.1 vs. ExPASy TrEMBL
Match: A0A6J1K140 (LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111489197 PE=4 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 1.9e-104
Identity = 183/189 (96.83%), Postives = 187/189 (98.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCTTCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQ+KC TCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC+ISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           RPAASVPEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of Sgr023891.1 vs. ExPASy TrEMBL
Match: A0A6J1FFI9 (LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC111445264 PE=4 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 1.9e-104
Identity = 183/189 (96.83%), Postives = 187/189 (98.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLS DGVSYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCTTCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQ+KC TCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGC+ISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           RPAASVPEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of Sgr023891.1 vs. ExPASy TrEMBL
Match: A0A1S3B3E4 (LIM domain-containing protein WLIM2b OS=Cucumis melo OX=3656 GN=LOC103485550 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 5.5e-104
Identity = 183/189 (96.83%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCTTCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQ+KC TCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCA+SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           R AA VPEA
Sbjct: 181 RSAAPVPEA 189

[Close]

BLAST of Sgr023891.1 vs. ExPASy TrEMBL
Match: A0A0A0KAA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009480 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 5.5e-104
Identity = 183/189 (96.83%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKC+HCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCTTCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQ+KC TCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQSYHKSCFKCSHGGCA+SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           R AA VPEA
Sbjct: 181 RSAAPVPEA 189

[Close]

BLAST of Sgr023891.1 vs. ExPASy TrEMBL
Match: A0A5J5BER3 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_026333 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 5.1e-102
Identity = 178/189 (94.18%), Postives = 183/189 (96.83%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVYPVE LSADG+SYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYPVELLSADGISYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCTTCGKTVYPLEK 120
           HFEQLFKETG+FNKNFQSPAKSAEKLTPELTRSPSKAA MFSGTQEKC TCGKT YPLEK
Sbjct: 61  HFEQLFKETGSFNKNFQSPAKSAEKLTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGCAI+PSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCAITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RPAASVPEA 190
           RP AS+PEA
Sbjct: 181 RPTASIPEA 189

[Close]

BLAST of Sgr023891.1 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-95
Identity = 165/199 (82.91%), Postives = 177/199 (88.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKCTHCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCTTCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQEKC TC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 R----------PAASVPEA 190
           R          PAASVPE+
Sbjct: 181 RSAAAAVAAGVPAASVPES 199

[Close]

BLAST of Sgr023891.1 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-95
Identity = 165/199 (82.91%), Postives = 177/199 (88.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKCTHCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCTTCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQEKC TC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 R----------PAASVPEA 190
           R          PAASVPE+
Sbjct: 181 RSAAAAVAAGVPAASVPES 199

[Close]

BLAST of Sgr023891.1 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-95
Identity = 165/199 (82.91%), Postives = 177/199 (88.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKCTHCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCTTCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQEKC TC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 R----------PAASVPEA 190
           R          PAASVPE+
Sbjct: 181 RSAAAAVAAGVPAASVPES 199

[Close]

BLAST of Sgr023891.1 vs. TAIR 10
Match: AT3G55770.4 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-95
Identity = 165/199 (82.91%), Postives = 177/199 (88.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKCTHCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCTTCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQEKC TC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 R----------PAASVPEA 190
           R          PAASVPE+
Sbjct: 181 RSAAAAVAAGVPAASVPES 199

[Close]

BLAST of Sgr023891.1 vs. TAIR 10
Match: AT3G55770.5 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-95
Identity = 165/199 (82.91%), Postives = 177/199 (88.94%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCTHCKGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY VE LSADGV YHKSCFKCTHCK  L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQEKCTTCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQEKC TC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180
           VTVESQ+YHKSCFKCSHGGC ISPSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSAS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 R----------PAASVPEA 190
           R          PAASVPE+
Sbjct: 181 RSAAAAVAAGVPAASVPES 199

The following BLAST results are available for this feature:

BLAST of Sgr023891.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023550254.1	1.3e-104	97.35	LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo]	[more]
XP_022939310.1	3.9e-104	96.83	LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939311.1 LIM do...	[more]
KAG6578438.1	8.6e-104	96.30	LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_004138434.1	1.1e-103	96.83	LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_008441430.1 PREDICTED...	[more]
XP_038884117.1	3.3e-103	96.30	LIM domain-containing protein WLIM2b [Benincasa hispida] >XP_038884118.1 LIM dom...	[more]

BLAST of Sgr023891.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M047	1.7e-94	82.91	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
O04193	1.6e-89	80.53	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
O80839	1.0e-70	65.41	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]
Q1ECF5	7.2e-69	61.41	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P...	[more]
Q7F9R9	7.9e-68	64.02	LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]

BLAST of Sgr023891.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K140	1.9e-104	96.83	LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111489197...	[more]
A0A6J1FFI9	1.9e-104	96.83	LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC1114452...	[more]
A0A1S3B3E4	5.5e-104	96.83	LIM domain-containing protein WLIM2b OS=Cucumis melo OX=3656 GN=LOC103485550 PE=...	[more]
A0A0A0KAA4	5.5e-104	96.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009480 PE=4 SV=1	[more]
A0A5J5BER3	5.1e-102	94.18	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_026333 PE=4 SV=1	[more]

BLAST of Sgr023891.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55770.1	1.2e-95	82.91	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	1.2e-95	82.91	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	1.2e-95	82.91	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.4	1.2e-95	82.91	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.5	1.2e-95	82.91	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 107..159 e-value: 3.4E-12 score: 56.5 coord: 9..61 e-value: 2.0E-13 score: 60.6
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 108..163 e-value: 2.0E-10 score: 40.7 coord: 10..65 e-value: 4.9E-12 score: 45.9
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 106..166 score: 12.4147
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.6621
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 4..74 e-value: 4.8E-21 score: 76.7 coord: 102..172 e-value: 1.5E-19 score: 71.9
None	No IPR available	PANTHER	PTHR24206:SF94	LIM DOMAIN-CONTAINING PROTEIN WLIM2B	coord: 1..189
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..189
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 108..168 e-value: 5.25977E-37 score: 121.038
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 6..68 e-value: 5.5119E-42 score: 133.744
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 134..173
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..76
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 100..133
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..35

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sgr023891	Sgr023891	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sgr023891.1.exon5	Sgr023891.1.exon5	exon
Sgr023891.1.exon4	Sgr023891.1.exon4	exon
Sgr023891.1.exon3	Sgr023891.1.exon3	exon
Sgr023891.1.exon2	Sgr023891.1.exon2	exon
Sgr023891.1.exon1	Sgr023891.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Sgr023891.1	cds.Sgr023891.1_5	CDS
cds.Sgr023891.1	cds.Sgr023891.1_4	CDS
cds.Sgr023891.1	cds.Sgr023891.1_3	CDS
cds.Sgr023891.1	cds.Sgr023891.1_2	CDS
cds.Sgr023891.1	cds.Sgr023891.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sgr023891.1	Sgr023891.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding