Sgr022739.1 (mRNA) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr022739.1
Type	mRNA
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	RRM domain-containing protein
Location	tig00000589: 1316110 .. 1317748 (-)
Sequence length	684
RNA-Seq Expression	Sgr022739.1
Synteny	Sgr022739.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATAAGAGCTGTACTGTCCCGGCGAATTTTTTCAGTTTCAAGGTTTTCTTTACAATCCGCTGCTGCAGCTGCCACTGCTTGTCCTTCGACTCATGCTTCTAATTTTAGTTCCGATGATGTTAAGGAGAAGCCTGCGCCGATTCCTTCAACGACCCTTTTCGTCTCCGGTAATCATTTTCCTGTTCTTTCTGGTTCTACGTTTTTGTATGCATATAAGTGATTGGGCATGAGTACACGTGTAGCTTACGAACCACTAGAGGTGTTTAGAGGTTTTCTCTTCTTCCCATTGATCCGATTGTTTAAAATTCAGAGTAACATTTTATGGGCTGTTTTCTGTATGTTGAAAAAGAGGAAGAAGATTCTTTGTATCATGCTACACTCTGCACACTGTCCGGTTGTGGGTTTTTATCAGTTTGTACTGCATATTCATGGGATTATTTGATGATCCAGGGCTGAATAAGAGAACTACATCTGAAAAACTTGGGGAAGCATTCTCCAAATTCGGTGAAGTTGTTCATGGTAATCTCATTTTTTATCTTGCTGTTTGCTTATTCCTTTCGTTTGCATTTACTCTCCCATTTTGCATTGCTGATTATATGTACTTATCATTACCATTCACATCCATCTTGTTTTAATTGAAGTCTGTTGAGATTTAATCCTTGGCGGGTAATCGATAATGGTTTTTCACTTATTTCAGCCCGGGTTGTGACCGACCGCCATTCTGGATACTCGAAGGGCTTTGGTTTTGTGAGATATGCCACCTTAGAAGAAGCAGTGAAAGGAATGAAAGGGATGGATGCACAGGTTCATTACCCACTTGAAATTACTATTATCTTTTCTAATGAAAATTACAAATGCTTACTAATTTTGAGAGAGAAAGAAGAAGAGGCTGTGGAGGAGTTGGCCATTGTGGGTAAGGACCATCGAGTTCAATTAAAGTATGATAGGTTTGAAACGTTAGATGAAAACTTTGGTTTCAAAGTATGAAAGCAAAGAATGAAATATGAATAGAAACGAAAGGACAACGGAAGATTTATGTTGAAGACATCTTGCTTTGACTCATATCTCATCCAATGCTTCTATTTGTGTTCTTGACTATATATACATACATATATTTTGTGGGAATGAGAAAGTCAAACTTTAAACAAGAGTAGCTTAAGGATTGCCTTGTGAAGTCTGATCTGAACCAAGAGGATTATGTCATGTATTACTTGATCTGTTACCAGGTTGTCTCAAGAGAAAAGGGGCCCGTCACCCTCAGCTGTGTATGTATTCTCTTCTTGTGGGGGAACAAAACATGAAAGTCTACTCATTGTTTTTTGGTTGGTGCAGTTTCTTGATGGGTGGGTGATATTTGCAGAATATGCAAGGCCTAGAAGTCCCCAGGATATTCTTCTTCTCCACACAATTACTAACCTAATAGATGATAGATCACAATGTATCGTGCTGATTACACCAGAGTACAGCATGCTGGTAAGGAGATTCTTCTACTCATATCTATTTGGTGGGTTCAGATTTTGGAGATTTGCTTATCAACTGAAGCTATCATATGCACTTCGCGGTCCAATAATGTTGGTTGGCTTACTGTTTCATTTTCTCGAGTCTCCCCTGCAATCTCATCTGTAATACTGTAG

mRNA sequence

ATGGCCATAAGAGCTGTACTGTCCCGGCGAATTTTTTCAGTTTCAAGGTTTTCTTTACAATCCGCTGCTGCAGCTGCCACTGCTTGTCCTTCGACTCATGCTTCTAATTTTAGTTCCGATGATGTTAAGGAGAAGCCTGCGCCGATTCCTTCAACGACCCTTTTCGTCTCCGGTAATCATTTTCCTGTTCTTTCTGGTTCTACGTTTTTTTTGTACTGCATATTCATGGGATTATTTGATGATCCAGGGCTGAATAAGAGAACTACATCTGAAAAACTTGGGGAAGCATTCTCCAAATTCGGTGAAGTTGTTCATGCCCGGGTTGTGACCGACCGCCATTCTGGATACTCGAAGGGCTTTGGTTTTGTGAGATATGCCACCTTAGAAGAAGCAGTGAAAGGAATGAAAGGGATGGATGCACAGTTTCTTGATGGGTGGGTGATATTTGCAGAATATGCAAGGCCTAGAAGTCCCCAGGATATTCTTCTTCTCCACACAATTACTAACCTAATAGATGATAGATCACAATGTATCGTGCTGATTACACCAGAGTACAGCATGCTGATTTTGGAGATTTGCTTATCAACTGAAGCTATCATATGCACTTCGCGGTCCAATAATGTTGGTTGGCTTACTGTTTCATTTTCTCGAGTCTCCCCTGCAATCTCATCTGTAATACTGTAG

Coding sequence (CDS)

ATGGCCATAAGAGCTGTACTGTCCCGGCGAATTTTTTCAGTTTCAAGGTTTTCTTTACAATCCGCTGCTGCAGCTGCCACTGCTTGTCCTTCGACTCATGCTTCTAATTTTAGTTCCGATGATGTTAAGGAGAAGCCTGCGCCGATTCCTTCAACGACCCTTTTCGTCTCCGGTAATCATTTTCCTGTTCTTTCTGGTTCTACGTTTTTTTTGTACTGCATATTCATGGGATTATTTGATGATCCAGGGCTGAATAAGAGAACTACATCTGAAAAACTTGGGGAAGCATTCTCCAAATTCGGTGAAGTTGTTCATGCCCGGGTTGTGACCGACCGCCATTCTGGATACTCGAAGGGCTTTGGTTTTGTGAGATATGCCACCTTAGAAGAAGCAGTGAAAGGAATGAAAGGGATGGATGCACAGTTTCTTGATGGGTGGGTGATATTTGCAGAATATGCAAGGCCTAGAAGTCCCCAGGATATTCTTCTTCTCCACACAATTACTAACCTAATAGATGATAGATCACAATGTATCGTGCTGATTACACCAGAGTACAGCATGCTGATTTTGGAGATTTGCTTATCAACTGAAGCTATCATATGCACTTCGCGGTCCAATAATGTTGGTTGGCTTACTGTTTCATTTTCTCGAGTCTCCCCTGCAATCTCATCTGTAATACTGTAG

Protein sequence

MAIRAVLSRRIFSVSRFSLQSAAAAATACPSTHASNFSSDDVKEKPAPIPSTTLFVSGNHFPVLSGSTFFLYCIFMGLFDDPGLNKRTTSEKLGEAFSKFGEVVHARVVTDRHSGYSKGFGFVRYATLEEAVKGMKGMDAQFLDGWVIFAEYARPRSPQDILLLHTITNLIDDRSQCIVLITPEYSMLILEICLSTEAIICTSRSNNVGWLTVSFSRVSPAISSVIL

Homology

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BLAST of Sgr022739.1 vs. NCBI nr
Match: XP_042940066.1 (organelle RRM domain-containing protein 2, mitochondrial-like isoform X1 [Carya illinoinensis] >KAG2690507.1 hypothetical protein I3760_09G189900 [Carya illinoinensis] >KAG6643148.1 hypothetical protein CIPAW_09G190400 [Carya illinoinensis] >KAG6697301.1 hypothetical protein I3842_09G192200 [Carya illinoinensis] >KAG7964754.1 hypothetical protein I3843_09G186400 [Carya illinoinensis])

HSP 1 Score: 164.1 bits (414), Expect = 1.4e-36
Identity = 98/158 (62.03%), Postives = 107/158 (67.72%), Query Frame = 0


Query: 1   MAIRAVLSRRIFSVSRFSLQSAAAAATACPSTHASNFSSDDVKEKPAPIPSTTLFVSGNH 60
           MA+R  L RR  S S FS QS  AA TA  S   +N +SD    KPA  PSTTLFVS   
Sbjct: 1   MALRPGLMRRYLSTSLFSSQS-FAATTATASASVANTASD----KPAVAPSTTLFVS--- 60

Query: 61  FPVLSGSTFFLYCIFMGLFDDPGLNKRTTSEKLGEAFSKFGEVVHARVVTDRHSGYSKGF 120
                                 GLNKRTTSEKL E+F+KFGEVVHARVVTDR+SGYSKGF
Sbjct: 61  ----------------------GLNKRTTSEKLQESFAKFGEVVHARVVTDRNSGYSKGF 120

Query: 121 GFVRYATLEEAVKGMKGMDAQFLDGWVIFAEYARPRSP 159
           GFV YATLE+A KG+KGMDAQFLDGWVIFAEYARPR+P
Sbjct: 121 GFVHYATLEDAEKGIKGMDAQFLDGWVIFAEYARPRTP 128

[Close]

BLAST of Sgr022739.1 vs. NCBI nr
Match: XP_018831311.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Juglans regia] >KAF5476069.1 hypothetical protein F2P56_007812 [Juglans regia])

HSP 1 Score: 163.7 bits (413), Expect = 1.9e-36
Identity = 98/158 (62.03%), Postives = 107/158 (67.72%), Query Frame = 0


Query: 1   MAIRAVLSRRIFSVSRFSLQSAAAAATACPSTHASNFSSDDVKEKPAPIPSTTLFVSGNH 60
           MA+R  L RR  S S FS QS  AAATA  S   +N +SD    KPA  PSTTLFVS   
Sbjct: 1   MALRPGLMRRFLSTSLFSSQS-YAAATATGSASVANTASD----KPAVAPSTTLFVS--- 60

Query: 61  FPVLSGSTFFLYCIFMGLFDDPGLNKRTTSEKLGEAFSKFGEVVHARVVTDRHSGYSKGF 120
                                 GLNKRTTSEKL E F+KFGEVVHARVVTDR+SGYSKGF
Sbjct: 61  ----------------------GLNKRTTSEKLQEEFAKFGEVVHARVVTDRNSGYSKGF 120

Query: 121 GFVRYATLEEAVKGMKGMDAQFLDGWVIFAEYARPRSP 159
           GFV YAT+E+A KG+KGMDAQFLDGWVIFAEYARPR+P
Sbjct: 121 GFVNYATVEDAEKGIKGMDAQFLDGWVIFAEYARPRTP 128

[Close]

BLAST of Sgr022739.1 vs. NCBI nr
Match: XP_041026018.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Juglans microcarpa x Juglans regia])

HSP 1 Score: 161.4 bits (407), Expect = 9.2e-36
Identity = 98/158 (62.03%), Postives = 105/158 (66.46%), Query Frame = 0


Query: 1   MAIRAVLSRRIFSVSRFSLQSAAAAATACPSTHASNFSSDDVKEKPAPIPSTTLFVSGNH 60
           MA+R  L RR  S S FS QS  AAATA  S   +N  SD    KPA  PS TLFVS   
Sbjct: 1   MALRPGLMRRFLSTSLFSSQS-YAAATATGSASVANTVSD----KPAVAPSMTLFVS--- 60

Query: 61  FPVLSGSTFFLYCIFMGLFDDPGLNKRTTSEKLGEAFSKFGEVVHARVVTDRHSGYSKGF 120
                                 GLNKRTTSEKL E F+KFGEVVHARVVTDR+SGYSKGF
Sbjct: 61  ----------------------GLNKRTTSEKLQEEFAKFGEVVHARVVTDRNSGYSKGF 120

Query: 121 GFVRYATLEEAVKGMKGMDAQFLDGWVIFAEYARPRSP 159
           GFV YATLE+A KG+KGMDAQFLDGWVIFAEYARPR+P
Sbjct: 121 GFVNYATLEDAEKGIKGMDAQFLDGWVIFAEYARPRTP 128

[Close]

BLAST of Sgr022739.1 vs. NCBI nr
Match: XP_030475528.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Syzygium oleosum])

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-34
Identity = 92/184 (50.00%), Postives = 111/184 (60.33%), Query Frame = 0


Query: 1   MAIRAVLSRRIFSVSRFSLQSAAAAATACPSTHASNFSSDDVKEKPAPIPSTTLFVSGNH 60
           MA+R  ++RR+ S S F+ Q +A AATA  +            +KPAPIPS TLFVSG  
Sbjct: 1   MALRLGIARRLLSTSSFASQLSAPAATATAA----------AGDKPAPIPSDTLFVSGKA 60

Query: 61  FPVLSGSTFFLYCIFMGLFDDP--------------------------GLNKRTTSEKLG 120
             +           F      P                          GLNKRTT+EKL 
Sbjct: 61  LGLGIARRLLSTSSFASQLSAPAATAAAAAAAGGDKPVPIPSDTLFVSGLNKRTTTEKLH 120

Query: 121 EAFSKFGEVVHARVVTDRHSGYSKGFGFVRYATLEEAVKGMKGMDAQFLDGWVIFAEYAR 159
           EAFSKFG+VVHA+VVTDR+SGYSKGFGFV+YATL++A KG++GMDA+FLDGWVIFAEYAR
Sbjct: 121 EAFSKFGQVVHAKVVTDRNSGYSKGFGFVKYATLDDAAKGIEGMDAKFLDGWVIFAEYAR 174

[Close]

BLAST of Sgr022739.1 vs. NCBI nr
Match: XP_030927597.1 (organelle RRM domain-containing protein 2, mitochondrial-like isoform X1 [Quercus lobata])

HSP 1 Score: 157.1 bits (396), Expect = 1.7e-34
Identity = 95/158 (60.13%), Postives = 104/158 (65.82%), Query Frame = 0


Query: 1   MAIRAVLSRRIFSVSRFSLQSAAAAATACPSTHASNFSSDDVKEKPAPIPSTTLFVSGNH 60
           M++R  L +R  S S F+ QS ++AA A  S  AS  +S      P   PSTTLFVS   
Sbjct: 1   MSLRPGLVKRFLSTSIFTSQS-SSAAIASASASASASASASASASP---PSTTLFVS--- 60

Query: 61  FPVLSGSTFFLYCIFMGLFDDPGLNKRTTSEKLGEAFSKFGEVVHARVVTDRHSGYSKGF 120
                                 GLNKRTTSEKL EAFSKFGEVVHARVVTDR SGYSKGF
Sbjct: 61  ----------------------GLNKRTTSEKLQEAFSKFGEVVHARVVTDRASGYSKGF 120

Query: 121 GFVRYATLEEAVKGMKGMDAQFLDGWVIFAEYARPRSP 159
           GFV YATLE+A KGMKGMDAQFLDGWVIFAEYARPR+P
Sbjct: 121 GFVNYATLEDAEKGMKGMDAQFLDGWVIFAEYARPRTP 129

[Close]

BLAST of Sgr022739.1 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.0e-26
Identity = 74/158 (46.84%), Postives = 91/158 (57.59%), Query Frame = 0


Query: 7   LSRRIFSVSR--FSLQSAAAAATACPSTHASNFS------SDDVKEKPAPIPSTTLFVSG 66
           ++ R+ ++SR    + SA         ++AS FS            +P   PST LFVS 
Sbjct: 3   MAMRLPAISRAVTEVASAPVGLRRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVS- 62

Query: 67  NHFPVLSGSTFFLYCIFMGLFDDPGLNKRTTSEKLGEAFSKFGEVVHARVVTDRHSGYSK 126
                                   GL+KRTTSE L  AF++FGEV  A+VVTDR SGYSK
Sbjct: 63  ------------------------GLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSK 122

Query: 127 GFGFVRYATLEEAVKGMKGMDAQFLDGWVIFAEYARPR 157
           GFGFVRYATLE++ KG+ GMD +FLDGWVIFAEYARPR
Sbjct: 123 GFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPR 135

[Close]

BLAST of Sgr022739.1 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-13
Identity = 36/75 (48.00%), Postives = 51/75 (68.00%), Query Frame = 0


Query: 83  GLNKRTTSEKLGEAFSKFGEVVHARVVTDRHSGYSKGFGFVRYATLEEAVKGMKGMDAQF 142
           GL+ RTT + L + F +FG ++H  +V D+ +   KGF F+RY T EEA+K ++GM  +F
Sbjct: 83  GLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKF 142

Query: 143 LDGWVIFAEYARPRS 158
           LDG VIF E A+ RS
Sbjct: 143 LDGRVIFVEEAKTRS 157

[Close]

BLAST of Sgr022739.1 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.7e-12
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 83  GLNKRTTSEKLGEAFSKFGEVVHARVVTDRHSGYSKGFGFVRYATLEEAVKGMKGMDAQF 142
           GL+  TT + L EAFSK G+VV A++V DR S  SKGFGFV +A+ +EA K +   + Q 
Sbjct: 40  GLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQ 99

Query: 143 LDGWVIFAEYARPR 157
           L+G  IF +YA+ +
Sbjct: 100 LNGRTIFVDYAKAK 113

[Close]

BLAST of Sgr022739.1 vs. ExPASy Swiss-Prot
Match: C0HFE5 (Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=ORRM1 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.3e-10
Identity = 30/75 (40.00%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 83  GLNKRTTSEKLGEAFSKFGEVVHARVVTDRHSGYSKGFGFVRYATLEEAVKGMKGMDAQF 142
           GL+  T+ + L  AF  FGE+V  +++ DR S  SKG+ FV Y T E     +K M+ Q 
Sbjct: 305 GLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKAMNGQI 364

Query: 143 LDGWVIFAEYARPRS 158
           ++GW+I  + A+ RS
Sbjct: 365 INGWMIVVDVAKTRS 379

[Close]

BLAST of Sgr022739.1 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09
Identity = 30/75 (40.00%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 83  GLNKRTTSEKLGEAFSKFGEVVHARVVTDRHSGYSKGFGFVRYATLEEAVKGMKGMDAQF 142
           G+      + L EAF+K+GEVV  RV+ DR +G S+GFGFV + + E A   ++ +D + 
Sbjct: 46  GMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRD 105

Query: 143 LDGWVIFAEYARPRS 158
           L G V+   YA  R+
Sbjct: 106 LHGRVVKVNYANDRT 120

[Close]

BLAST of Sgr022739.1 vs. ExPASy TrEMBL
Match: A0A2I4FI37 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Juglans regia OX=51240 GN=LOC108998988 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 9.0e-37
Identity = 98/158 (62.03%), Postives = 107/158 (67.72%), Query Frame = 0


Query: 1   MAIRAVLSRRIFSVSRFSLQSAAAAATACPSTHASNFSSDDVKEKPAPIPSTTLFVSGNH 60
           MA+R  L RR  S S FS QS  AAATA  S   +N +SD    KPA  PSTTLFVS   
Sbjct: 1   MALRPGLMRRFLSTSLFSSQS-YAAATATGSASVANTASD----KPAVAPSTTLFVS--- 60

Query: 61  FPVLSGSTFFLYCIFMGLFDDPGLNKRTTSEKLGEAFSKFGEVVHARVVTDRHSGYSKGF 120
                                 GLNKRTTSEKL E F+KFGEVVHARVVTDR+SGYSKGF
Sbjct: 61  ----------------------GLNKRTTSEKLQEEFAKFGEVVHARVVTDRNSGYSKGF 120

Query: 121 GFVRYATLEEAVKGMKGMDAQFLDGWVIFAEYARPRSP 159
           GFV YAT+E+A KG+KGMDAQFLDGWVIFAEYARPR+P
Sbjct: 121 GFVNYATVEDAEKGIKGMDAQFLDGWVIFAEYARPRTP 128

[Close]

BLAST of Sgr022739.1 vs. ExPASy TrEMBL
Match: A0A7N2M6U1 (RRM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 8.4e-35
Identity = 95/158 (60.13%), Postives = 104/158 (65.82%), Query Frame = 0


Query: 1   MAIRAVLSRRIFSVSRFSLQSAAAAATACPSTHASNFSSDDVKEKPAPIPSTTLFVSGNH 60
           M++R  L +R  S S F+ QS ++AA A  S  AS  +S      P   PSTTLFVS   
Sbjct: 1   MSLRPGLVKRFLSTSIFTSQS-SSAAIASASASASASASASASASP---PSTTLFVS--- 60

Query: 61  FPVLSGSTFFLYCIFMGLFDDPGLNKRTTSEKLGEAFSKFGEVVHARVVTDRHSGYSKGF 120
                                 GLNKRTTSEKL EAFSKFGEVVHARVVTDR SGYSKGF
Sbjct: 61  ----------------------GLNKRTTSEKLQEAFSKFGEVVHARVVTDRASGYSKGF 120

Query: 121 GFVRYATLEEAVKGMKGMDAQFLDGWVIFAEYARPRSP 159
           GFV YATLE+A KGMKGMDAQFLDGWVIFAEYARPR+P
Sbjct: 121 GFVNYATLEDAEKGMKGMDAQFLDGWVIFAEYARPRTP 129

[Close]

BLAST of Sgr022739.1 vs. ExPASy TrEMBL
Match: A0A059AM75 (RRM domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I01065 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-34
Identity = 87/158 (55.06%), Postives = 108/158 (68.35%), Query Frame = 0


Query: 1   MAIRAVLSRRIFSVSRFSLQSAAAAATACPSTHASNFSSDDVKEKPAPIPSTTLFVSGNH 60
           MA+R   +RR+ S S F+ Q +A AATA  +  A +       +KPAPIPS TLFVS   
Sbjct: 1   MAMRLGFARRLLSTSSFASQLSAPAATAAATAAAGS-------DKPAPIPSDTLFVS--- 60

Query: 61  FPVLSGSTFFLYCIFMGLFDDPGLNKRTTSEKLGEAFSKFGEVVHARVVTDRHSGYSKGF 120
                                 GLNKRTT+EKL E+FS+FG+VVHA+VVTDR+SGYSKGF
Sbjct: 61  ----------------------GLNKRTTTEKLHESFSQFGQVVHAKVVTDRNSGYSKGF 120

Query: 121 GFVRYATLEEAVKGMKGMDAQFLDGWVIFAEYARPRSP 159
           GFV+YA++E+A KG++GMDA+FLDGWVIFAEYARPR P
Sbjct: 121 GFVKYASIEDAGKGIEGMDAKFLDGWVIFAEYARPRPP 126

[Close]

BLAST of Sgr022739.1 vs. ExPASy TrEMBL
Match: A0A7N2M600 (RRM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-34
Identity = 97/159 (61.01%), Postives = 105/159 (66.04%), Query Frame = 0


Query: 1   MAIRAVLSRRIFSVSRFSLQ-SAAAAATACPSTHASNFSSDDVKEKPAPIPSTTLFVSGN 60
           MA+R  L +R  S S F+ Q S+AA A+A  S  AS  +S       A  PSTTLFVS  
Sbjct: 1   MALRPGLVKRFLSTSIFTSQPSSAAIASASASASASASAS-----ASASPPSTTLFVS-- 60

Query: 61  HFPVLSGSTFFLYCIFMGLFDDPGLNKRTTSEKLGEAFSKFGEVVHARVVTDRHSGYSKG 120
                                  GLNKRTTSEKL EAFSKFGEVVHARVVTDR SGYSKG
Sbjct: 61  -----------------------GLNKRTTSEKLQEAFSKFGEVVHARVVTDRASGYSKG 120

Query: 121 FGFVRYATLEEAVKGMKGMDAQFLDGWVIFAEYARPRSP 159
           FGFV YATLE+A KGMKGMDAQFLDGWVIFAEYARPR+P
Sbjct: 121 FGFVNYATLEDAEKGMKGMDAQFLDGWVIFAEYARPRTP 129

[Close]

BLAST of Sgr022739.1 vs. ExPASy TrEMBL
Match: A0A2I0I5X5 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Punica granatum OX=22663 GN=LOC116208790 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 7.1e-34
Identity = 87/159 (54.72%), Postives = 108/159 (67.92%), Query Frame = 0


Query: 1   MAIRAVLSRRIFSVSRFSLQSAAAAATACPSTHASNFSSDDVKEKPAPIPSTTLFVSGNH 60
           MA+R +++RR  S S FS Q  AAA+     T A + +SD    KPAP+PS TLFVS   
Sbjct: 1   MALRTMIARRFLSTSAFSSQFGAAASNL---TAAGSTASD----KPAPVPSDTLFVS--- 60

Query: 61  FPVLSGSTFFLYCIFMGLFDDPGLNKRTTSEKLGEAFSKFGEVVHARVVTDRHSGYSKGF 120
                                 GLNKRTTSE L EAF KFG+VVHA+VVTDR++G+SKGF
Sbjct: 61  ----------------------GLNKRTTSETLHEAFVKFGQVVHAKVVTDRNTGFSKGF 120

Query: 121 GFVRYATLEEAVKGMKGMDAQFLDGWVIFAEYARPRSPQ 160
           GFV+YA++E+A KG++GMDA+FL+GWVIFAEYARPR PQ
Sbjct: 121 GFVKYASIEDAAKGIEGMDAKFLEGWVIFAEYARPRPPQ 127

[Close]

BLAST of Sgr022739.1 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 118.6 bits (296), Expect = 6.4e-27
Identity = 74/158 (46.84%), Postives = 91/158 (57.59%), Query Frame = 0


Query: 7   LSRRIFSVSR--FSLQSAAAAATACPSTHASNFS------SDDVKEKPAPIPSTTLFVSG 66
           ++ R+ ++SR    + SA         ++AS FS            +P   PST LFVS 
Sbjct: 3   MAMRLPAISRAVTEVASAPVGLRRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVS- 62

Query: 67  NHFPVLSGSTFFLYCIFMGLFDDPGLNKRTTSEKLGEAFSKFGEVVHARVVTDRHSGYSK 126
                                   GL+KRTTSE L  AF++FGEV  A+VVTDR SGYSK
Sbjct: 63  ------------------------GLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSK 122

Query: 127 GFGFVRYATLEEAVKGMKGMDAQFLDGWVIFAEYARPR 157
           GFGFVRYATLE++ KG+ GMD +FLDGWVIFAEYARPR
Sbjct: 123 GFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPR 135

[Close]

BLAST of Sgr022739.1 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 105.5 bits (262), Expect = 5.6e-23
Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 83  GLNKRTTSEKLGEAFSKFGEVVHARVVTDRHSGYSKGFGFVRYATLEEAVKGMKGMDAQF 142
           GL++ TT+EKL +AF+ FG++V ARV+TDR SG SKGFGFV YAT+E+A K    M+A+F
Sbjct: 40  GLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKF 99

Query: 143 LDGWVIFAEYARPRSPQ 160
           LDGWVIF + ARPR P+
Sbjct: 100 LDGWVIFVDPARPREPR 116

[Close]

BLAST of Sgr022739.1 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 78.6 bits (192), Expect = 7.3e-15
Identity = 36/75 (48.00%), Postives = 51/75 (68.00%), Query Frame = 0


Query: 83  GLNKRTTSEKLGEAFSKFGEVVHARVVTDRHSGYSKGFGFVRYATLEEAVKGMKGMDAQF 142
           GL+ RTT + L + F +FG ++H  +V D+ +   KGF F+RY T EEA+K ++GM  +F
Sbjct: 83  GLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKF 142

Query: 143 LDGWVIFAEYARPRS 158
           LDG VIF E A+ RS
Sbjct: 143 LDGRVIFVEEAKTRS 157

[Close]

BLAST of Sgr022739.1 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 72.8 bits (177), Expect = 4.0e-13
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 83  GLNKRTTSEKLGEAFSKFGEVVHARVVTDRHSGYSKGFGFVRYATLEEAVKGMKGMDAQF 142
           GL+  TT + L EAFSK G+VV A++V DR S  SKGFGFV +A+ +EA K +   + Q 
Sbjct: 40  GLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQ 99

Query: 143 LDGWVIFAEYARPR 157
           L+G  IF +YA+ +
Sbjct: 100 LNGRTIFVDYAKAK 113

[Close]

BLAST of Sgr022739.1 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-10
Identity = 30/75 (40.00%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 83  GLNKRTTSEKLGEAFSKFGEVVHARVVTDRHSGYSKGFGFVRYATLEEAVKGMKGMDAQF 142
           G+      + L EAF+K+GEVV  RV+ DR +G S+GFGFV + + E A   ++ +D + 
Sbjct: 46  GMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRD 105

Query: 143 LDGWVIFAEYARPRS 158
           L G V+   YA  R+
Sbjct: 106 LHGRVVKVNYANDRT 120

The following BLAST results are available for this feature:

BLAST of Sgr022739.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_042940066.1	1.4e-36	62.03	organelle RRM domain-containing protein 2, mitochondrial-like isoform X1 [Carya ...	[more]
XP_018831311.1	1.9e-36	62.03	organelle RRM domain-containing protein 2, mitochondrial-like [Juglans regia] >K...	[more]
XP_041026018.1	9.2e-36	62.03	organelle RRM domain-containing protein 2, mitochondrial-like [Juglans microcarp...	[more]
XP_030475528.1	1.3e-34	50.00	organelle RRM domain-containing protein 2, mitochondrial-like [Syzygium oleosum]	[more]
XP_030927597.1	1.7e-34	60.13	organelle RRM domain-containing protein 2, mitochondrial-like isoform X1 [Quercu...	[more]

BLAST of Sgr022739.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	9.0e-26	46.84	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FX45	1.0e-13	48.00	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FFZ6	5.7e-12	48.65	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
C0HFE5	5.3e-10	40.00	Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=...	[more]
Q9FNR1	1.5e-09	40.00	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Sgr022739.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2I4FI37	9.0e-37	62.03	organelle RRM domain-containing protein 2, mitochondrial-like OS=Juglans regia O...	[more]
A0A7N2M6U1	8.4e-35	60.13	RRM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A059AM75	1.9e-34	55.06	RRM domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I01065 P...	[more]
A0A7N2M600	1.9e-34	61.01	RRM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2I0I5X5	7.1e-34	54.72	organelle RRM domain-containing protein 2, mitochondrial-like OS=Punica granatum...	[more]

BLAST of Sgr022739.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54580.1	6.4e-27	46.84	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37510.1	5.6e-23	62.34	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	7.3e-15	48.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	4.0e-13	48.65	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G61030.1	1.1e-10	40.00	glycine-rich RNA-binding protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 73..151 e-value: 7.0E-15 score: 65.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 83..145 e-value: 1.2E-13 score: 50.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 72..155 score: 15.186867
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 20..160 e-value: 1.6E-21 score: 78.9
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 8..160
None	No IPR available	PANTHER	PTHR15241:SF280	GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE	coord: 8..160
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..29 score: 5.0
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 83..158

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sgr022739	Sgr022739	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sgr022739.1.exon5	Sgr022739.1.exon5	exon
Sgr022739.1.exon4	Sgr022739.1.exon4	exon
Sgr022739.1.exon3	Sgr022739.1.exon3	exon
Sgr022739.1.exon2	Sgr022739.1.exon2	exon
Sgr022739.1.exon1	Sgr022739.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Sgr022739.1	cds.Sgr022739.1_5	CDS
cds.Sgr022739.1	cds.Sgr022739.1_4	CDS
cds.Sgr022739.1	cds.Sgr022739.1_3	CDS
cds.Sgr022739.1	cds.Sgr022739.1_2	CDS
cds.Sgr022739.1	cds.Sgr022739.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sgr022739.1	Sgr022739.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding