Sgr018117.1 (mRNA) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr018117.1
Type	mRNA
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	Reverse transcriptase domain-containing protein
Location	tig00153107: 273576 .. 273827 (-)
Sequence length	252
RNA-Seq Expression	Sgr018117.1
Synteny	Sgr018117.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGCTGAGAAAGAATTCACCGAGAGTTGGAATTTGATTTCAAAAAGATTGGACAAGGAAGATTTCTCATGGGTGGCGACTCAGATTTTTGGTTTTGGGCTATGGAGGCTTTGGAAGATGAGGAATCAAAGAGTTATGCAGGGAGAAAACCTCCAAATAGAAACAAGCATAAGATTAGCGTGTGCTGAATTGCAAGAATTTCTTGATGCTAAAGATCCAACTCAGCCACAAAGAGAGGAGAATGAATGA

mRNA sequence

ATGCTTGCTGAGAAAGAATTCACCGAGAGTTGGAATTTGATTTCAAAAAGATTGGACAAGGAAGATTTCTCATGGGTGGCGACTCAGATTTTTGGTTTTGGGCTATGGAGGCTTTGGAAGATGAGGAATCAAAGAGTTATGCAGGGAGAAAACCTCCAAATAGAAACAAGCATAAGATTAGCGTGTGCTGAATTGCAAGAATTTCTTGATGCTAAAGATCCAACTCAGCCACAAAGAGAGGAGAATGAATGA

Coding sequence (CDS)

ATGCTTGCTGAGAAAGAATTCACCGAGAGTTGGAATTTGATTTCAAAAAGATTGGACAAGGAAGATTTCTCATGGGTGGCGACTCAGATTTTTGGTTTTGGGCTATGGAGGCTTTGGAAGATGAGGAATCAAAGAGTTATGCAGGGAGAAAACCTCCAAATAGAAACAAGCATAAGATTAGCGTGTGCTGAATTGCAAGAATTTCTTGATGCTAAAGATCCAACTCAGCCACAAAGAGAGGAGAATGAATGA

Protein sequence

MLAEKEFTESWNLISKRLDKEDFSWVATQIFGFGLWRLWKMRNQRVMQGENLQIETSIRLACAELQEFLDAKDPTQPQREENE

Homology

[Close]

BLAST of Sgr018117.1 vs. NCBI nr
Match: CAB4321714.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 53.9 bits (128), Expect = 7.6e-04
Identity = 27/77 (35.06%), Postives = 39/77 (50.65%), Query Frame = 0


Query: 2   LAEKEFTESWNLISKRLDKEDFSWVATQIFGFGLWRLWKMRNQRVMQGENLQIETSIRLA 61
           LA ++F  +W  +   L+  + +  A Q F FGLWR+WK RN  V  G       ++ L 
Sbjct: 262 LAGEDFISTWQHMMTTLNSSEHAAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEAVLLL 321

Query: 62  CAELQEFLDAKDPTQPQ 79
             ++ EF  AK   QPQ
Sbjct: 322 LKQVSEFRTAKQDLQPQ 338

[Close]

BLAST of Sgr018117.1 vs. NCBI nr
Match: CAB4313148.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 53.9 bits (128), Expect = 7.6e-04
Identity = 26/77 (33.77%), Postives = 39/77 (50.65%), Query Frame = 0


Query: 2   LAEKEFTESWNLISKRLDKEDFSWVATQIFGFGLWRLWKMRNQRVMQGENLQIETSIRLA 61
           LA ++F  +W  I   ++  + +  A Q F FGLWR+WK RN  V  G       ++ L 
Sbjct: 132 LAAEDFISTWRYIMTMINSSEHAAEAIQWFVFGLWRIWKARNSVVFDGVQADPAEAVHLL 191

Query: 62  CAELQEFLDAKDPTQPQ 79
             ++ E+  AK   QPQ
Sbjct: 192 LQQVSEYRIAKQNLQPQ 208

[Close]

BLAST of Sgr018117.1 vs. NCBI nr
Match: CAB4291403.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 53.9 bits (128), Expect = 7.6e-04
Identity = 27/77 (35.06%), Postives = 39/77 (50.65%), Query Frame = 0


Query: 2   LAEKEFTESWNLISKRLDKEDFSWVATQIFGFGLWRLWKMRNQRVMQGENLQIETSIRLA 61
           LA ++F  +W  +   L+  + +  A Q F FGLWR+WK RN  V  G       ++ L 
Sbjct: 200 LAGEDFISTWQHMMTTLNSSEHAAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEAVLLL 259

Query: 62  CAELQEFLDAKDPTQPQ 79
             ++ EF  AK   QPQ
Sbjct: 260 LKQVSEFRTAKQDLQPQ 276

[Close]

BLAST of Sgr018117.1 vs. NCBI nr
Match: CAB4303756.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 53.9 bits (128), Expect = 7.6e-04
Identity = 27/77 (35.06%), Postives = 39/77 (50.65%), Query Frame = 0


Query: 2   LAEKEFTESWNLISKRLDKEDFSWVATQIFGFGLWRLWKMRNQRVMQGENLQIETSIRLA 61
           LA ++F  +W  +   L+  + +  A Q F FGLWR+WK RN  V  G       ++ L 
Sbjct: 707 LAGEDFISTWQHMMTTLNSSEHAAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEAVLLL 766

Query: 62  CAELQEFLDAKDPTQPQ 79
             ++ EF  AK   QPQ
Sbjct: 767 LKQVSEFRTAKQDLQPQ 783

[Close]

BLAST of Sgr018117.1 vs. ExPASy TrEMBL
Match: A0A6J5YDN0 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS50956 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.7e-04
Identity = 27/77 (35.06%), Postives = 39/77 (50.65%), Query Frame = 0


Query: 2   LAEKEFTESWNLISKRLDKEDFSWVATQIFGFGLWRLWKMRNQRVMQGENLQIETSIRLA 61
           LA ++F  +W  +   L+  + +  A Q F FGLWR+WK RN  V  G       ++ L 
Sbjct: 262 LAGEDFISTWQHMMTTLNSSEHAAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEAVLLL 321

Query: 62  CAELQEFLDAKDPTQPQ 79
             ++ EF  AK   QPQ
Sbjct: 322 LKQVSEFRTAKQDLQPQ 338

[Close]

BLAST of Sgr018117.1 vs. ExPASy TrEMBL
Match: A0A6J5XPQ2 (RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS35944 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.7e-04
Identity = 26/77 (33.77%), Postives = 39/77 (50.65%), Query Frame = 0


Query: 2   LAEKEFTESWNLISKRLDKEDFSWVATQIFGFGLWRLWKMRNQRVMQGENLQIETSIRLA 61
           LA ++F  +W  I   ++  + +  A Q F FGLWR+WK RN  V  G       ++ L 
Sbjct: 132 LAAEDFISTWRYIMTMINSSEHAAEAIQWFVFGLWRIWKARNSVVFDGVQADPAEAVHLL 191

Query: 62  CAELQEFLDAKDPTQPQ 79
             ++ E+  AK   QPQ
Sbjct: 192 LQQVSEYRIAKQNLQPQ 208

[Close]

BLAST of Sgr018117.1 vs. ExPASy TrEMBL
Match: A0A6J5WPU6 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS20372 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.7e-04
Identity = 27/77 (35.06%), Postives = 39/77 (50.65%), Query Frame = 0


Query: 2   LAEKEFTESWNLISKRLDKEDFSWVATQIFGFGLWRLWKMRNQRVMQGENLQIETSIRLA 61
           LA ++F  +W  +   L+  + +  A Q F FGLWR+WK RN  V  G       ++ L 
Sbjct: 707 LAGEDFISTWQHMMTTLNSSEHAAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEAVLLL 766

Query: 62  CAELQEFLDAKDPTQPQ 79
             ++ EF  AK   QPQ
Sbjct: 767 LKQVSEFRTAKQDLQPQ 783

[Close]

BLAST of Sgr018117.1 vs. ExPASy TrEMBL
Match: A0A6J5VSP2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51717 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.7e-04
Identity = 27/77 (35.06%), Postives = 39/77 (50.65%), Query Frame = 0


Query: 2   LAEKEFTESWNLISKRLDKEDFSWVATQIFGFGLWRLWKMRNQRVMQGENLQIETSIRLA 61
           LA ++F  +W  +   L+  + +  A Q F FGLWR+WK RN  V  G       ++ L 
Sbjct: 200 LAGEDFISTWQHMMTTLNSSEHAAEAIQWFVFGLWRIWKARNLAVFDGVQADPTEAVLLL 259

Query: 62  CAELQEFLDAKDPTQPQ 79
             ++ EF  AK   QPQ
Sbjct: 260 LKQVSEFRTAKQDLQPQ 276

[Close]

BLAST of Sgr018117.1 vs. ExPASy TrEMBL
Match: A0A6J5WZ67 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS25303 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.2e-04
Identity = 25/76 (32.89%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 2   LAEKEFTESWNLISKRLDKEDFSWVATQIFGFGLWRLWKMRNQRVMQGENLQIETSIRLA 61
           L  +EF++ W+ + ++ +K   S    Q+  FGLWRLWK RN  V +G  +   T +   
Sbjct: 838 LIGEEFSKCWDNLLQKYEKHQNSQEILQVVVFGLWRLWKTRNSAVFEGSVMDPTTMVGCL 897

Query: 62  CAELQEFLDAKDPTQP 78
            A++QE+  A+   +P
Sbjct: 898 HAQVQEYRAARMAAKP 913

The following BLAST results are available for this feature:

BLAST of Sgr018117.1 vs. NCBI nr


Match Name	E-value	Identity	Description
CAB4321714.1	7.6e-04	35.06	unnamed protein product [Prunus armeniaca]	[more]
CAB4313148.1	7.6e-04	33.77	unnamed protein product [Prunus armeniaca]	[more]
CAB4291403.1	7.6e-04	35.06	unnamed protein product [Prunus armeniaca]	[more]
CAB4303756.1	7.6e-04	35.06	unnamed protein product [Prunus armeniaca]	[more]

BLAST of Sgr018117.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sgr018117.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J5YDN0	3.7e-04	35.06	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS50956 PE=...	[more]
A0A6J5XPQ2	3.7e-04	33.77	RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCU...	[more]
A0A6J5WPU6	3.7e-04	35.06	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]
A0A6J5VSP2	3.7e-04	35.06	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS51717 PE=4 S...	[more]
A0A6J5WZ67	8.2e-04	32.89	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]

BLAST of Sgr018117.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sgr018117	Sgr018117	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sgr018117.1.exon1	Sgr018117.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Sgr018117.1	cds.Sgr018117.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sgr018117.1	Sgr018117.1-protein	polypeptide