Sgr016002.1 (mRNA) Monk fruit (Qingpiguo) v1

Overview


Name	Sgr016002.1
Type	mRNA
Organism	Siraitia grosvenorii (Monk fruit (Qingpiguo) v1)
Description	Mediator of RNA polymerase II transcription subunit 2-like
Location	tig00006406: 555534 .. 556258 (-)
Sequence length	246
RNA-Seq Expression	Sgr016002.1
Synteny	Sgr016002.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAAGAAGAATAATCTTGCGCGCAGGAAGAGGCAACATGAATTCGACCTTAAAAGTAACTTTTAATGTTGGATTCATCTCCTGAATGAATTGTTTGTTTCAGTTAATTCACTTTTCCGTGGTTCTGATACTAATATTTTTCCATGGGCGGATGGATTAGGGGAGAGAGAAGAAAAAGAAAAGGCGGCGAAGAAGCTCCAAGCAAAGAAGAATAAAATGAAAGTAACTCTCTTTCTCTTTCTCTCTTTTGGGTTGAGAAAACTAGAATTTTCTGCTTGGCTGACAAAAAAATTGAGGGTTAGGGGGAGAGATTGATCATTGTCTCTGTTTTGGTTTTCACGTAATAATTTGGAAAATTGCTCATACGAGTAATGTTCTAGTTTCTCCCATTCCAATCGTATACGGTGGGTTTAGTGGTGGAAACGCTAGGATCGAGAAGTTCAATGCCTCCCATCTGCATGATTTTTTTGAGCAATTAGGGAATACTCGGAGAATATCAAACAAAATTTGTTTGCCTTGGTTGAACATGTGCGTGTTATTTTAATATCATTTGAAAGTTCGAAAGTCTCATCGTTTTCGTTTGATCATGTGCTAAGGTTGATGGTAGCGTAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTCGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCGGCAAAAGCAAAAGCTGCCCAGGCAATGGAGCTTGATAAATGA

mRNA sequence

ATGTCGAAGAAGAATAATCTTGCGCGCAGGAAGAGGCAACATGAATTCGACCTTAAAAGGGAGAGAGAAGAAAAAGAAAAGGCGGCGAAGAAGCTCCAAGCAAAGAAGAATAAAATGAAAGTTGATGGTAGCGTAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTCGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCGGCAAAAGCAAAAGCTGCCCAGGCAATGGAGCTTGATAAATGA

Coding sequence (CDS)

ATGTCGAAGAAGAATAATCTTGCGCGCAGGAAGAGGCAACATGAATTCGACCTTAAAAGGGAGAGAGAAGAAAAAGAAAAGGCGGCGAAGAAGCTCCAAGCAAAGAAGAATAAAATGAAAGTTGATGGTAGCGTAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTCGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCGGCAAAAGCAAAAGCTGCCCAGGCAATGGAGCTTGATAAATGA

Protein sequence

MSKKNNLARRKRQHEFDLKREREEKEKAAKKLQAKKNKMKVDGSVKKKKGGGGFQVGKKKVKTKLTAAAKAKAAQAMELDK

Homology

[Close]

BLAST of Sgr016002.1 vs. NCBI nr
Match: XP_022941890.1 (uncharacterized protein LOC111447114 [Cucurbita moschata] >XP_022974605.1 uncharacterized protein LOC111473288 [Cucurbita maxima] >XP_023540792.1 uncharacterized protein LOC111801059 [Cucurbita pepo subsp. pepo] >KAG6597121.1 hypothetical protein SDJN03_10301, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028585.1 hypothetical protein SDJN02_09766 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.9 bits (315), Expect = 1.5e-25
Identity = 74/81 (91.36%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MSKKNNLARRKRQHEFDLKREREEKEKAAKKLQAKKNKMKVDGSVKKKKGGGGFQVGKKK 60
          MSKKNNL+RRK QHEFDL+RE++EKEKAAKKLQAKKNKMKVDGS KKKKGG GFQVGKKK
Sbjct: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 82
          VKTKLTAAAKAKAAQAMELDK
Sbjct: 61 VKTKLTAAAKAKAAQAMELDK 81

[Close]

BLAST of Sgr016002.1 vs. NCBI nr
Match: XP_022147302.1 (uncharacterized protein LOC111016287 [Momordica charantia])

HSP 1 Score: 124.4 bits (311), Expect = 4.5e-25
Identity = 72/81 (88.89%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MSKKNNLARRKRQHEFDLKREREEKEKAAKKLQAKKNKMKVDGSVKKKKGGGGFQVGKKK 60
          MSKKNNL+RRK+QHEFDLKRE++E+EKAAKKLQAKKN+MKVDGS K+KKGGGGFQVGKKK
Sbjct: 1  MSKKNNLSRRKKQHEFDLKREKDEREKAAKKLQAKKNQMKVDGSGKQKKGGGGFQVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 82
          VKTKLTAAAKAKAAQAMELD+
Sbjct: 61 VKTKLTAAAKAKAAQAMELDQ 81

[Close]

BLAST of Sgr016002.1 vs. NCBI nr
Match: KAA0048973.1 (mediator of RNA polymerase II transcription subunit 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 8.4e-24
Identity = 70/81 (86.42%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MSKKNNLARRKRQHEFDLKREREEKEKAAKKLQAKKNKMKVDGSVKKKKGGGGFQVGKKK 60
          MSKKN+L+RRK+Q+EFDL+RE++EKEKAAKKLQAKKN MKVDGS KKKKGGGGFQVGKKK
Sbjct: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 82
          VKTKLTAAAKAKA+QAM+LDK
Sbjct: 61 VKTKLTAAAKAKASQAMDLDK 81

[Close]

BLAST of Sgr016002.1 vs. NCBI nr
Match: KGN56523.1 (hypothetical protein Csa_010072 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 70/81 (86.42%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MSKKNNLARRKRQHEFDLKREREEKEKAAKKLQAKKNKMKVDGSVKKKKGGGGFQVGKKK 60
          MSKKN+L+RRK+Q+EFDL+RE++EKEKAAKKLQAKKN MKVDGS KKKKGGGGFQVGKKK
Sbjct: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 82
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTATAKAKASQAMELDK 81

[Close]

BLAST of Sgr016002.1 vs. NCBI nr
Match: XP_030457135.1 (uncharacterized protein LOC115678006 [Syzygium oleosum])

HSP 1 Score: 117.1 bits (292), Expect = 7.1e-23
Identity = 69/81 (85.19%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MSKKNNLARRKRQHEFDLKREREEKEKAAKKLQAKKNKMKVDGSVKKKKGGGGFQVGKKK 60
          MSKKN+L+RRK+Q+EFDL+RE+ EKEKAAKKLQAKKNKMKVDGS KKKKG GGFQVGK+K
Sbjct: 1  MSKKNSLSRRKKQYEFDLRREKAEKEKAAKKLQAKKNKMKVDGSGKKKKGAGGFQVGKRK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 82
          +KTKLTA AKAKAAQAMELDK
Sbjct: 61 LKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of Sgr016002.1 vs. ExPASy TrEMBL
Match: A0A6J1IED7 (uncharacterized protein LOC111473288 OS=Cucurbita maxima OX=3661 GN=LOC111473288 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.4e-26
Identity = 74/81 (91.36%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MSKKNNLARRKRQHEFDLKREREEKEKAAKKLQAKKNKMKVDGSVKKKKGGGGFQVGKKK 60
          MSKKNNL+RRK QHEFDL+RE++EKEKAAKKLQAKKNKMKVDGS KKKKGG GFQVGKKK
Sbjct: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 82
          VKTKLTAAAKAKAAQAMELDK
Sbjct: 61 VKTKLTAAAKAKAAQAMELDK 81

[Close]

BLAST of Sgr016002.1 vs. ExPASy TrEMBL
Match: A0A6J1FV29 (uncharacterized protein LOC111447114 OS=Cucurbita moschata OX=3662 GN=LOC111447114 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.4e-26
Identity = 74/81 (91.36%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MSKKNNLARRKRQHEFDLKREREEKEKAAKKLQAKKNKMKVDGSVKKKKGGGGFQVGKKK 60
          MSKKNNL+RRK QHEFDL+RE++EKEKAAKKLQAKKNKMKVDGS KKKKGG GFQVGKKK
Sbjct: 1  MSKKNNLSRRKNQHEFDLRREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGAGFQVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 82
          VKTKLTAAAKAKAAQAMELDK
Sbjct: 61 VKTKLTAAAKAKAAQAMELDK 81

[Close]

BLAST of Sgr016002.1 vs. ExPASy TrEMBL
Match: A0A6J1D208 (uncharacterized protein LOC111016287 OS=Momordica charantia OX=3673 GN=LOC111016287 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.2e-25
Identity = 72/81 (88.89%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MSKKNNLARRKRQHEFDLKREREEKEKAAKKLQAKKNKMKVDGSVKKKKGGGGFQVGKKK 60
          MSKKNNL+RRK+QHEFDLKRE++E+EKAAKKLQAKKN+MKVDGS K+KKGGGGFQVGKKK
Sbjct: 1  MSKKNNLSRRKKQHEFDLKREKDEREKAAKKLQAKKNQMKVDGSGKQKKGGGGFQVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 82
          VKTKLTAAAKAKAAQAMELD+
Sbjct: 61 VKTKLTAAAKAKAAQAMELDQ 81

[Close]

BLAST of Sgr016002.1 vs. ExPASy TrEMBL
Match: A0A5A7TZC8 (Mediator of RNA polymerase II transcription subunit 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001950 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.1e-24
Identity = 70/81 (86.42%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MSKKNNLARRKRQHEFDLKREREEKEKAAKKLQAKKNKMKVDGSVKKKKGGGGFQVGKKK 60
          MSKKN+L+RRK+Q+EFDL+RE++EKEKAAKKLQAKKN MKVDGS KKKKGGGGFQVGKKK
Sbjct: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNNMKVDGSGKKKKGGGGFQVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 82
          VKTKLTAAAKAKA+QAM+LDK
Sbjct: 61 VKTKLTAAAKAKASQAMDLDK 81

[Close]

BLAST of Sgr016002.1 vs. ExPASy TrEMBL
Match: A0A0A0L493 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122470 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.3e-24
Identity = 70/81 (86.42%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MSKKNNLARRKRQHEFDLKREREEKEKAAKKLQAKKNKMKVDGSVKKKKGGGGFQVGKKK 60
          MSKKN+L+RRK+Q+EFDL+RE++EKEKAAKKLQAKKN MKVDGS KKKKGGGGFQVGKKK
Sbjct: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELDK 82
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTATAKAKASQAMELDK 81

[Close]

BLAST of Sgr016002.1 vs. TAIR 10
Match: AT2G45860.1 (unknown protein; Has 32 Blast hits to 32 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 94.7 bits (234), Expect = 3.5e-20
Identity = 59/80 (73.75%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 1  MSKKNNLARRKRQHEFDLKREREEKEKAAKKLQAKKNKMKVDGSVKKKKGGGGFQVGKKK 60
          MSKKNNLA+RK+QHE++L++E+E ++K  KKL A KNKMKVDGS KKKK  GGF VGKKK
Sbjct: 1  MSKKNNLAKRKKQHEYNLQKEKELQDKKIKKLHANKNKMKVDGSGKKKK--GGFSVGKKK 60

Query: 61 VKTKLTAAAKAKAAQAMELD 81
          +KTKLT  AKAKAAQAMELD
Sbjct: 61 LKTKLTPTAKAKAAQAMELD 78

The following BLAST results are available for this feature:

BLAST of Sgr016002.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941890.1	1.5e-25	91.36	uncharacterized protein LOC111447114 [Cucurbita moschata] >XP_022974605.1 unchar...	[more]
XP_022147302.1	4.5e-25	88.89	uncharacterized protein LOC111016287 [Momordica charantia]	[more]
KAA0048973.1	8.4e-24	86.42	mediator of RNA polymerase II transcription subunit 2-like [Cucumis melo var. ma...	[more]
KGN56523.1	1.1e-23	86.42	hypothetical protein Csa_010072 [Cucumis sativus]	[more]
XP_030457135.1	7.1e-23	85.19	uncharacterized protein LOC115678006 [Syzygium oleosum]	[more]

BLAST of Sgr016002.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sgr016002.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IED7	7.4e-26	91.36	uncharacterized protein LOC111473288 OS=Cucurbita maxima OX=3661 GN=LOC111473288...	[more]
A0A6J1FV29	7.4e-26	91.36	uncharacterized protein LOC111447114 OS=Cucurbita moschata OX=3662 GN=LOC1114471...	[more]
A0A6J1D208	2.2e-25	88.89	uncharacterized protein LOC111016287 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A5A7TZC8	4.1e-24	86.42	Mediator of RNA polymerase II transcription subunit 2-like OS=Cucumis melo var. ...	[more]
A0A0A0L493	5.3e-24	86.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122470 PE=4 SV=1	[more]

BLAST of Sgr016002.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45860.1	3.5e-20	73.75	unknown protein; Has 32 Blast hits to 32 proteins in 13 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Monk fruit (Qingpiguo) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 4..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..63
None	No IPR available	PANTHER	PTHR36745	OS02G0824400 PROTEIN	coord: 1..81

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sgr016002	Sgr016002	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sgr016002.1.exon3	Sgr016002.1.exon3	exon
Sgr016002.1.exon2	Sgr016002.1.exon2	exon
Sgr016002.1.exon1	Sgr016002.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Sgr016002.1	cds.Sgr016002.1_3	CDS
cds.Sgr016002.1	cds.Sgr016002.1_2	CDS
cds.Sgr016002.1	cds.Sgr016002.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sgr016002.1	Sgr016002.1-protein	polypeptide