Sed0027537.1 (mRNA) Chayote v1

Overview


Name	Sed0027537.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Methyl-CpG-binding domain-containing protein 4
Location	LG09: 35923008 .. 35926066 (-)
Sequence length	612
RNA-Seq Expression	Sed0027537.1
Synteny	Sed0027537.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTACCATTACCCTTGCCCCAAACACACCCTAAAGCAAGTCATTAAATTCCGATCGGAGATCGGAGACCACACCGGCGATGGCCGCCGCCAAGCCTCCGAAAACGCCGATGAAGGTATGGCGGGAACCCTAACTTGATCTCTTCATCATTCACAGTTTCCCTCTTCTTCTCATCATCGGATTCAATTCATTTCATACATTGAACCCTAATTTCTGAAGATCCAAATAGAAAATAGGTAACTCGAAACAATTGTCTAATGAAATCTGATGTTGCTTGGAGCTGGCTTTACCTTTCATTTTCTGCTCTAACAAGTACTGTGTAATGTGAAGGGTTTTGCTTAGAATGTTTCAATTGTTAGTGAGGAAAAATTAGGGAAAATCACATTTTTAGTCACCAGGTTTCGTTTGGGTGCAGTAATATGTTTTAAAATCATACATTTTAATCTAGGCTCCTCCCAAGGTCCTAGGTTCGAGACTCAGCTGTGATATTACTCCTTCTATGTCTTTCGATGCCTAGCCTAGGGATGAGCTTGGTTACCCTTGTTTTAAAATAAAAAAATCATACATTTTAATCACTAACATTTCGAAAATGTTCAGTTTTAGTCCTGTCATTTCACTGATGCAATTTTAGTCCCGAGATAAAAAAAATTTGTTAGTTACATGATGCAAGATTGACTACGATAATAATTCGATTTTAAGTTTCAATGAATTTATGAAGCTGCTATTTTGATATTGATGTGAAATAAATTCAAACTATTCCTAAGGACTAAAATGGAGTATTATTGAAATGTTATGGGTGTAAATGTTTGATTTTGAAATATAAGAACTAAATAGACACTAAACTCCATCGAAATCTTTGGGGTGTAAGGATGTAAGTGTTTGATTTTGAAATCTAGAGACTAAATAGACCCTAAACTCCAAACCTAGGGACTAAACTTGTATTTTTCTCAAAACATTATAAACAATCGTTAGATGTGAATCTCCTTAATTACCATTGGACTAGATACATATTTGGAGGTCCCCAAAGGGTGGCATAGTGGTTGAAGATTTGGGCTTTGAAGATATGCTCCCTTCAAGGTCATAGGTTTGAGACCCACATGTGACATTACTCCTTCGGTGTCTCCCGGTGTCTGGCCTAGAAACGGGTGTGGCTTTGAAGATATGCTCCATTCAAGGTCATAGGTTCGAGACCCACATGTGACATTACTCCTTCAGTGTCTCCCGGTGCCTGGCCTAAGAACGGGTGTGGTTACCCTCGTTTAAAAAAAAAAAAACATATTTGGAGTGAGTACTATAGTGGCAGTCTTTTCCAATAAATTCTGGTGAACAGGGGGATTTGAATCTATGGCCCATAGGGTAGATAATCACTTGAATTATGCTTATGTATGGAAACAACCGATATATATATATACATATACGTGAATGTTTTGGCCAAAACATTCACGTCCGATTATCTTTTTGATGGATCAATTTGGACGTTTTTTCCAAATCTTGAAGTTTAAGTGAATTTTCTTAGTCTCAGGTTTTAGGGATCAAAACTAGTGTAACTTTTACAATTTTTACTTTAGAACTTGCAGGGGATCTTCAGCTGTAGTTGTATTGATTTTTGCATGTATAAATAACAAGTCCATGTAAATTATTGGAAGCCTCTTTTGGTTGACAAATTATTCAATAAGGCTACCACAAGGTAGCTGCTTCTTGATACTTGTTAAATGTAGATAAAAAGCTATGTCTATCCTGTAAATCATTCGATACAAAAGCGAAGTATATTTACAATTTCTTTCTCCCACATCCTAAATGCAAAAATCTACATTTTGTTGTAAGGGTAAAATACTATTGAGCTTTTTACCTATACTCCATTTTGGTCCATAAACTTTGACCTATGCTTCATTTTGATCCCTAAACTTTGACTTATGCTTTATTTTGGTCCCTGAACTTTCAAAAATACAATTTTAGTCCTTAAACTTTTAAAAGTCCACTTTTAGTCTCTAACCTTTTGAGGTTGGTTCCGTTTCAATCCCTGAACTTTAAAAAAAACTTAAAATTGGTACTTAGAATTTCTTTTTTAAAAAATTACCAATCTTCCTCTATTAATTTTTTTAAAATGGTCACATTTTGGCTTTGATATAGTTATAATTACTAACATTATTGAACCAATTTCGATTAGTATTAACTTCAAATTTATTATAGGAACCAATTTTAACAGTACAAAGATTAAAATTGGTCTTTTGAATGTTCAAGGACCAAAATGGAACAATGGGTCAAACTTCAAGGACAAAATTGGTATTTTACTCTTTTTTTAATCCTAAAAAATTAGAGTTTCACCCCATATATCTTGGAGCACTCGCACCTCTGCTAAGGCTCGAACTCAAGAGACAACAAGGAGTTTTACAATTAAACTTACTCGTAGGTTTTGAATTTGGGATCTCCAAGGAAGCATACCTCCCGCCTCTACCAACGAGAGGATCTTTTGGGATAAAACTCTCAACTACATTGTGGTGGTCTCATCCAATGATCTCTCATTTCTCTGTAAACTAAGGTGCTATTGGTTTCTCTTTGCAGGCACCAGGGCTTTCAGTAGGTCTATACGCTGCACAATGTGAGGAGTGCTTCAAATGGAGGTTGATAAGTACTCAAGAGGAGTACGAGGATATCAGAAGCAAACTAATAGAAGAACCCTTTACTTGCCGTAGAAAAACCGATACTTCTTGTGACGACCCTCCCGATATTGACTATGATACAACTCGAACTTGGGTCATTGACAAACCTAACATCCCAAAGACCCCAAAAGATTTCAAGAGGCGTTTGGTGCTGAGAAGGAATTTCTCTAAACTAGACGCTTACTACGTCACACCGACGGGGAAGTCGGTTAGATCGTTTAAGGAGATGCTTGCCTTTGTAGAAGCAAATCCACAATACAAAGATATACCTATTTCAGGCTTCAGTTTTGCAGTCCCAAAAGTAATGGAAGAAACTGTACCTGAAAGCATATTGAAAGAGGGCTTAAGCAGTGCCAAGAGAATGAAGAAATCAAAGGATGAATCTGATAATACTTACTGA

mRNA sequence

ATTACCATTACCCTTGCCCCAAACACACCCTAAAGCAAGTCATTAAATTCCGATCGGAGATCGGAGACCACACCGGCGATGGCCGCCGCCAAGCCTCCGAAAACGCCGATGAAGGCACCAGGGCTTTCAGTAGGTCTATACGCTGCACAATGTGAGGAGTGCTTCAAATGGAGGTTGATAAGTACTCAAGAGGAGTACGAGGATATCAGAAGCAAACTAATAGAAGAACCCTTTACTTGCCGTAGAAAAACCGATACTTCTTGTGACGACCCTCCCGATATTGACTATGATACAACTCGAACTTGGGTCATTGACAAACCTAACATCCCAAAGACCCCAAAAGATTTCAAGAGGCGTTTGGTGCTGAGAAGGAATTTCTCTAAACTAGACGCTTACTACGTCACACCGACGGGGAAGTCGGTTAGATCGTTTAAGGAGATGCTTGCCTTTGTAGAAGCAAATCCACAATACAAAGATATACCTATTTCAGGCTTCAGTTTTGCAGTCCCAAAAGTAATGGAAGAAACTGTACCTGAAAGCATATTGAAAGAGGGCTTAAGCAGTGCCAAGAGAATGAAGAAATCAAAGGATGAATCTGATAATACTTACTGA

Coding sequence (CDS)

ATGGCCGCCGCCAAGCCTCCGAAAACGCCGATGAAGGCACCAGGGCTTTCAGTAGGTCTATACGCTGCACAATGTGAGGAGTGCTTCAAATGGAGGTTGATAAGTACTCAAGAGGAGTACGAGGATATCAGAAGCAAACTAATAGAAGAACCCTTTACTTGCCGTAGAAAAACCGATACTTCTTGTGACGACCCTCCCGATATTGACTATGATACAACTCGAACTTGGGTCATTGACAAACCTAACATCCCAAAGACCCCAAAAGATTTCAAGAGGCGTTTGGTGCTGAGAAGGAATTTCTCTAAACTAGACGCTTACTACGTCACACCGACGGGGAAGTCGGTTAGATCGTTTAAGGAGATGCTTGCCTTTGTAGAAGCAAATCCACAATACAAAGATATACCTATTTCAGGCTTCAGTTTTGCAGTCCCAAAAGTAATGGAAGAAACTGTACCTGAAAGCATATTGAAAGAGGGCTTAAGCAGTGCCAAGAGAATGAAGAAATCAAAGGATGAATCTGATAATACTTACTGA

Protein sequence

MAAAKPPKTPMKAPGLSVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCRRKTDTSCDDPPDIDYDTTRTWVIDKPNIPKTPKDFKRRLVLRRNFSKLDAYYVTPTGKSVRSFKEMLAFVEANPQYKDIPISGFSFAVPKVMEETVPESILKEGLSSAKRMKKSKDESDNTY

Homology

[Close]

BLAST of Sed0027537.1 vs. NCBI nr
Match: XP_023513509.1 (methyl-CpG-binding domain-containing protein 4-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 308.1 bits (788), Expect = 4.8e-80
Identity = 152/174 (87.36%), Postives = 161/174 (92.53%), Query Frame = 0


Query: 1   MAAAKPPK-TPMKAPGLSVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCRRKTD 60
           MAA KPPK TP KAPGL VGLYAAQCEECFKWRLIS+QEEYEDIRS+LIEEPFTC RKTD
Sbjct: 1   MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD 60

Query: 61  TSCDDPPDIDYDTTRTWVIDKPNIPKTPKDFKRRLVLRRNFSKLDAYYVTPTGKSVRSFK 120
           TSC+DPPDIDYDTTRTWVIDKPN+PKTPK FKRRLVLRRNFSKLDAYYVTPTGK+VRS  
Sbjct: 61  TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST 120

Query: 121 EMLAFVEANPQYKDIPISGFSFAVPKVMEETVPESILKEGLSSAKRMKKSKDES 174
           +M+AFVEANPQYKDIP+S FSFAVPKVMEETVPESILK G SS KR KK+KDES
Sbjct: 121 KMIAFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKSGFSSCKRSKKTKDES 174

[Close]

BLAST of Sed0027537.1 vs. NCBI nr
Match: XP_023004659.1 (methyl-CpG-binding domain-containing protein 4-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 307.4 bits (786), Expect = 8.1e-80
Identity = 152/174 (87.36%), Postives = 160/174 (91.95%), Query Frame = 0


Query: 1   MAAAKPPK-TPMKAPGLSVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCRRKTD 60
           MAA KPPK TP KAPGL VGLYAAQCEECFKWRLIS+QEEYEDIRS+LIEEPFTC RKTD
Sbjct: 1   MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD 60

Query: 61  TSCDDPPDIDYDTTRTWVIDKPNIPKTPKDFKRRLVLRRNFSKLDAYYVTPTGKSVRSFK 120
           TSC+DPPDIDYDTTRTWVIDKPN+PKTPK FKRRLVLRRNFSKLDAYYVTPTGK+VRS  
Sbjct: 61  TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST 120

Query: 121 EMLAFVEANPQYKDIPISGFSFAVPKVMEETVPESILKEGLSSAKRMKKSKDES 174
           +ML FVEANPQYKDIP+S FSFAVPKVMEETVPESILK G SS KR KK+KDES
Sbjct: 121 KMLTFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKSGFSSCKRSKKTKDES 174

[Close]

BLAST of Sed0027537.1 vs. NCBI nr
Match: XP_022960475.1 (methyl-CpG-binding domain-containing protein 4-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 305.4 bits (781), Expect = 3.1e-79
Identity = 152/174 (87.36%), Postives = 160/174 (91.95%), Query Frame = 0


Query: 1   MAAAKPPK-TPMKAPGLSVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCRRKTD 60
           MAA KPPK TP KAPGL VGLYAAQCEECFKWRLIS+QEEYEDIRS+LIEEPFTC RKTD
Sbjct: 1   MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD 60

Query: 61  TSCDDPPDIDYDTTRTWVIDKPNIPKTPKDFKRRLVLRRNFSKLDAYYVTPTGKSVRSFK 120
           TSC+DPPDIDYDTTRTWVIDKPN+PKTPK FKRRLVLRRNFSKLDAYYVTPTGK+VRS  
Sbjct: 61  TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST 120

Query: 121 EMLAFVEANPQYKDIPISGFSFAVPKVMEETVPESILKEGLSSAKRMKKSKDES 174
           +MLAFVEANPQYKDIP+S FSFAVPKVMEETVPESILK   SS KR KK+KDES
Sbjct: 121 KMLAFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDES 174

[Close]

BLAST of Sed0027537.1 vs. NCBI nr
Match: XP_038896997.1 (methyl-CpG-binding domain-containing protein 4-like [Benincasa hispida])

HSP 1 Score: 300.4 bits (768), Expect = 9.9e-78
Identity = 150/178 (84.27%), Postives = 163/178 (91.57%), Query Frame = 0


Query: 1   MAAAKPPKTPMKAPGLSVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCRRKTDT 60
           MAAA+PPKTP+K+  L VGL+AAQCEECFKWRLISTQEEYEDIRSK+IEEPFTC RKTDT
Sbjct: 30  MAAARPPKTPVKSARLPVGLFAAQCEECFKWRLISTQEEYEDIRSKMIEEPFTCPRKTDT 89

Query: 61  SCDDPPDIDYDTTRTWVIDKPNIPKTPKDFKRRLVLRRNFSKLDAYYVTPTGKSVRSFKE 120
           SCD+PPDIDYDTTRTW IDKPNIPKTP  F RRLVLR+NFSK DAYYVTPTGK+VRS  E
Sbjct: 90  SCDNPPDIDYDTTRTWGIDKPNIPKTPHGFTRRLVLRKNFSKFDAYYVTPTGKTVRSSTE 149

Query: 121 MLAFVEANPQYKDIPISGFSFAVPKVMEETVPESILKEGL--SSAKRMKKSKDESDNT 177
           MLAFVEANP+YKDIP+S FSFAVPKVMEETVPESILKEGL  SSAKR+KK+KDES +T
Sbjct: 150 MLAFVEANPEYKDIPLSSFSFAVPKVMEETVPESILKEGLNSSSAKRIKKTKDESAHT 207

[Close]

BLAST of Sed0027537.1 vs. NCBI nr
Match: XP_023513510.1 (methyl-CpG-binding domain-containing protein 4-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.0 bits (754), Expect = 4.2e-76
Identity = 142/163 (87.12%), Postives = 153/163 (93.87%), Query Frame = 0


Query: 11  MKAPGLSVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCRRKTDTSCDDPPDIDY 70
           ++APGL VGLYAAQCEECFKWRLIS+QEEYEDIRS+LIEEPFTC RKTDTSC+DPPDIDY
Sbjct: 2   VEAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPDIDY 61

Query: 71  DTTRTWVIDKPNIPKTPKDFKRRLVLRRNFSKLDAYYVTPTGKSVRSFKEMLAFVEANPQ 130
           DTTRTWVIDKPN+PKTPK FKRRLVLRRNFSKLDAYYVTPTGK+VRS  +M+AFVEANPQ
Sbjct: 62  DTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMIAFVEANPQ 121

Query: 131 YKDIPISGFSFAVPKVMEETVPESILKEGLSSAKRMKKSKDES 174
           YKDIP+S FSFAVPKVMEETVPESILK G SS KR KK+KDES
Sbjct: 122 YKDIPLSDFSFAVPKVMEETVPESILKSGFSSCKRSKKTKDES 164

[Close]

BLAST of Sed0027537.1 vs. ExPASy Swiss-Prot
Match: Q9LYB9 (Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=MBD4 PE=1 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 7.5e-52
Identity = 91/149 (61.07%), Postives = 118/149 (79.19%), Query Frame = 0


Query: 4   AKPPKTPMKAPGLSVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCRRKTDTSCD 63
           AKP      APG  +  YAAQC+ C KWR+I +QEEYEDIRSK++E+PF C++K   SC+
Sbjct: 11  AKPKAKKDVAPGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMSCE 70

Query: 64  DPPDIDYDTTRTWVIDKPNIPKTPKDFKRRLVLRRNFSKLDAYYVTPTGKSVRSFKEMLA 123
           +P DIDYD++RTWVIDKP +PKTPK FKR LVLR+++SK+D YY TPTGK +RS  E+ A
Sbjct: 71  EPADIDYDSSRTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEIAA 130

Query: 124 FVEANPQYKDIPISGFSFAVPKVMEETVP 153
           FVEANP++++ P+  F+F VPKVME+TVP
Sbjct: 131 FVEANPEFRNAPLGDFNFTVPKVMEDTVP 159

[Close]

BLAST of Sed0027537.1 vs. ExPASy Swiss-Prot
Match: Q5XEN5 (Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=MBD1 PE=1 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 4.2e-47
Identity = 82/145 (56.55%), Postives = 113/145 (77.93%), Query Frame = 0


Query: 14  PGLSVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCRRKTDTSCDDPPDIDYDTT 73
           PG S+ ++A QCE+C KWR I TQ+EYEDIRS++ E+PF C+ K   SC+D  D++YD++
Sbjct: 48  PGRSIDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDLNYDSS 107

Query: 74  RTWVIDKPNIPKTPKDFKRRLVLRRNFSKLDAYYVTPTGKSVRSFKEMLAFVEANPQYKD 133
           RTWVIDKP +P+TP+ FKR L+LR+++SK+DAYY+TPTGK ++S  E+ AF++AN  YK 
Sbjct: 108 RTWVIDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDANQDYKY 167

Query: 134 IPISGFSFAVPKVMEETVPESILKE 159
             +  F+F VPKVMEETVP  IL +
Sbjct: 168 ALLGDFNFTVPKVMEETVPSGILSD 192

[Close]

BLAST of Sed0027537.1 vs. ExPASy Swiss-Prot
Match: Q8LA53 (Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=MBD2 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.3e-24
Identity = 65/168 (38.69%), Postives = 92/168 (54.76%), Query Frame = 0


Query: 17  SVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTC----RRKTDTSCDDPPDIDYDT 76
           S+G +  QC  CFKWRL+ + ++YE+IR +L+E PF C      K D SCD P DI  D 
Sbjct: 55  SIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDG 114

Query: 77  TRTWVIDKPNIPKTPKDFKRRLVLRRNFSK--LDAYYVTPTGKSVRSFKEMLAFVEANPQ 136
           TR W IDKPNI + P  ++R L +R        D YYV P+GK +RS  E+  ++  N +
Sbjct: 115 TRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSE 174

Query: 137 Y--KDIPISGFSFAVPKVMEETVPESILKEGLSSAKRMKKSKDESDNT 177
           Y  + + +S FSF +PK +++              KR  +  D  DNT
Sbjct: 175 YIGEGVKLSQFSFQIPKPLQDDYVR----------KRPARLLDSIDNT 212

[Close]

BLAST of Sed0027537.1 vs. ExPASy Swiss-Prot
Match: Q4PSK1 (Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=MBD3 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.0e-22
Identity = 57/130 (43.85%), Postives = 83/130 (63.85%), Query Frame = 0


Query: 21  YAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCRRKTDTSCDDPPD--IDYDT-TRTWV 80
           YAAQC +C K R I +QE+YE+IRSK +E+ F C+R     C++P D  +++D+ T  W 
Sbjct: 12  YAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR-----CEEPGDMVMNFDSLTMRWF 71

Query: 81  IDKPNIPKTPKDFKRRLVLRRNFSKLDAYY--VTPTGKSVRSFKEMLAFVEANPQYKDIP 140
            D+ +IPKTP+  KR LV+R N  K+D YY  + P  K  +S KE+  F+E   ++KD+ 
Sbjct: 72  QDEHSIPKTPQGLKRVLVVRTNCVKVDVYYESLAPRRKRFKSIKEVATFIEDKEEFKDMT 131

Query: 141 ISGFSFAVPK 146
           +   SFA PK
Sbjct: 132 LEEVSFAAPK 136

[Close]

BLAST of Sed0027537.1 vs. ExPASy Swiss-Prot
Match: Q9FZP6 (Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana OX=3702 GN=MBD12 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.2e-14
Identity = 51/157 (32.48%), Postives = 84/157 (53.50%), Query Frame = 0


Query: 24  QCEECFKWRLISTQEEYEDIRSKLIEEPFTCRRKT----DTSCDDPPDIDYDTTRTWVID 83
           QC +C KWRLI + + Y  I+   ++ PF C   +    + SC+ P   D  T  TW   
Sbjct: 3   QCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVPQ--DGTTCDTW--- 62

Query: 84  KPNIPKTPKDFKRRLVLRRNFSKL-DAYYVTPTGKSVRSFKEMLAFVEANPQY--KDIPI 143
            P+IP  P  + R + +R   +K  D YY  P+G+ +RS  E+ +F++ +P+Y  + +  
Sbjct: 63  -PSIPPIPTGWSRSVHIRSESTKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVREGVNR 122

Query: 144 SGFSFAVPKVMEETVPESILKEGLSSAKRMKKSKDES 174
           S FSF +PK ++    ++ +K+     KR K SKD +
Sbjct: 123 SQFSFQIPKPLD----DNYVKKRTRPVKRRKSSKDNN 149

[Close]

BLAST of Sed0027537.1 vs. ExPASy TrEMBL
Match: A0A6J1KWY1 (methyl-CpG-binding domain-containing protein 4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111497887 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.9e-80
Identity = 152/174 (87.36%), Postives = 160/174 (91.95%), Query Frame = 0


Query: 1   MAAAKPPK-TPMKAPGLSVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCRRKTD 60
           MAA KPPK TP KAPGL VGLYAAQCEECFKWRLIS+QEEYEDIRS+LIEEPFTC RKTD
Sbjct: 1   MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD 60

Query: 61  TSCDDPPDIDYDTTRTWVIDKPNIPKTPKDFKRRLVLRRNFSKLDAYYVTPTGKSVRSFK 120
           TSC+DPPDIDYDTTRTWVIDKPN+PKTPK FKRRLVLRRNFSKLDAYYVTPTGK+VRS  
Sbjct: 61  TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST 120

Query: 121 EMLAFVEANPQYKDIPISGFSFAVPKVMEETVPESILKEGLSSAKRMKKSKDES 174
           +ML FVEANPQYKDIP+S FSFAVPKVMEETVPESILK G SS KR KK+KDES
Sbjct: 121 KMLTFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKSGFSSCKRSKKTKDES 174

[Close]

BLAST of Sed0027537.1 vs. ExPASy TrEMBL
Match: A0A6J1H964 (methyl-CpG-binding domain-containing protein 4-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461200 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.5e-79
Identity = 152/174 (87.36%), Postives = 160/174 (91.95%), Query Frame = 0


Query: 1   MAAAKPPK-TPMKAPGLSVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCRRKTD 60
           MAA KPPK TP KAPGL VGLYAAQCEECFKWRLIS+QEEYEDIRS+LIEEPFTC RKTD
Sbjct: 1   MAAVKPPKTTPAKAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTD 60

Query: 61  TSCDDPPDIDYDTTRTWVIDKPNIPKTPKDFKRRLVLRRNFSKLDAYYVTPTGKSVRSFK 120
           TSC+DPPDIDYDTTRTWVIDKPN+PKTPK FKRRLVLRRNFSKLDAYYVTPTGK+VRS  
Sbjct: 61  TSCEDPPDIDYDTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSST 120

Query: 121 EMLAFVEANPQYKDIPISGFSFAVPKVMEETVPESILKEGLSSAKRMKKSKDES 174
           +MLAFVEANPQYKDIP+S FSFAVPKVMEETVPESILK   SS KR KK+KDES
Sbjct: 121 KMLAFVEANPQYKDIPLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDES 174

[Close]

BLAST of Sed0027537.1 vs. ExPASy TrEMBL
Match: A0A6J1KV79 (methyl-CpG-binding domain-containing protein 4-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111497887 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.5e-76
Identity = 142/163 (87.12%), Postives = 152/163 (93.25%), Query Frame = 0


Query: 11  MKAPGLSVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCRRKTDTSCDDPPDIDY 70
           ++APGL VGLYAAQCEECFKWRLIS+QEEYEDIRS+LIEEPFTC RKTDTSC+DPPDIDY
Sbjct: 2   VEAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPDIDY 61

Query: 71  DTTRTWVIDKPNIPKTPKDFKRRLVLRRNFSKLDAYYVTPTGKSVRSFKEMLAFVEANPQ 130
           DTTRTWVIDKPN+PKTPK FKRRLVLRRNFSKLDAYYVTPTGK+VRS  +ML FVEANPQ
Sbjct: 62  DTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMLTFVEANPQ 121

Query: 131 YKDIPISGFSFAVPKVMEETVPESILKEGLSSAKRMKKSKDES 174
           YKDIP+S FSFAVPKVMEETVPESILK G SS KR KK+KDES
Sbjct: 122 YKDIPLSDFSFAVPKVMEETVPESILKSGFSSCKRSKKTKDES 164

[Close]

BLAST of Sed0027537.1 vs. ExPASy TrEMBL
Match: A0A6J1H7I8 (methyl-CpG-binding domain-containing protein 4-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111461200 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.3e-75
Identity = 142/163 (87.12%), Postives = 152/163 (93.25%), Query Frame = 0


Query: 11  MKAPGLSVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCRRKTDTSCDDPPDIDY 70
           ++APGL VGLYAAQCEECFKWRLIS+QEEYEDIRS+LIEEPFTC RKTDTSC+DPPDIDY
Sbjct: 2   VEAPGLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPDIDY 61

Query: 71  DTTRTWVIDKPNIPKTPKDFKRRLVLRRNFSKLDAYYVTPTGKSVRSFKEMLAFVEANPQ 130
           DTTRTWVIDKPN+PKTPK FKRRLVLRRNFSKLDAYYVTPTGK+VRS  +MLAFVEANPQ
Sbjct: 62  DTTRTWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMLAFVEANPQ 121

Query: 131 YKDIPISGFSFAVPKVMEETVPESILKEGLSSAKRMKKSKDES 174
           YKDIP+S FSFAVPKVMEETVPESILK   SS KR KK+KDES
Sbjct: 122 YKDIPLSDFSFAVPKVMEETVPESILKSCFSSCKRSKKTKDES 164

[Close]

BLAST of Sed0027537.1 vs. ExPASy TrEMBL
Match: A0A6J1L071 (methyl-CpG-binding domain-containing protein 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497887 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.1e-74
Identity = 140/159 (88.05%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 15  GLSVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCRRKTDTSCDDPPDIDYDTTR 74
           GL VGLYAAQCEECFKWRLIS+QEEYEDIRS+LIEEPFTC RKTDTSC+DPPDIDYDTTR
Sbjct: 38  GLPVGLYAAQCEECFKWRLISSQEEYEDIRSRLIEEPFTCHRKTDTSCEDPPDIDYDTTR 97

Query: 75  TWVIDKPNIPKTPKDFKRRLVLRRNFSKLDAYYVTPTGKSVRSFKEMLAFVEANPQYKDI 134
           TWVIDKPN+PKTPK FKRRLVLRRNFSKLDAYYVTPTGK+VRS  +ML FVEANPQYKDI
Sbjct: 98  TWVIDKPNLPKTPKGFKRRLVLRRNFSKLDAYYVTPTGKTVRSSTKMLTFVEANPQYKDI 157

Query: 135 PISGFSFAVPKVMEETVPESILKEGLSSAKRMKKSKDES 174
           P+S FSFAVPKVMEETVPESILK G SS KR KK+KDES
Sbjct: 158 PLSDFSFAVPKVMEETVPESILKSGFSSCKRSKKTKDES 196

[Close]

BLAST of Sed0027537.1 vs. TAIR 10
Match: AT3G63030.1 (methyl-CPG-binding domain 4 )

HSP 1 Score: 204.9 bits (520), Expect = 5.3e-53
Identity = 91/149 (61.07%), Postives = 118/149 (79.19%), Query Frame = 0


Query: 4   AKPPKTPMKAPGLSVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCRRKTDTSCD 63
           AKP      APG  +  YAAQC+ C KWR+I +QEEYEDIRSK++E+PF C++K   SC+
Sbjct: 11  AKPKAKKDVAPGRLIDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQGMSCE 70

Query: 64  DPPDIDYDTTRTWVIDKPNIPKTPKDFKRRLVLRRNFSKLDAYYVTPTGKSVRSFKEMLA 123
           +P DIDYD++RTWVIDKP +PKTPK FKR LVLR+++SK+D YY TPTGK +RS  E+ A
Sbjct: 71  EPADIDYDSSRTWVIDKPGLPKTPKGFKRSLVLRKDYSKMDTYYFTPTGKKLRSRNEIAA 130

Query: 124 FVEANPQYKDIPISGFSFAVPKVMEETVP 153
           FVEANP++++ P+  F+F VPKVME+TVP
Sbjct: 131 FVEANPEFRNAPLGDFNFTVPKVMEDTVP 159

[Close]

BLAST of Sed0027537.1 vs. TAIR 10
Match: AT4G22745.1 (methyl-CPG-binding domain 1 )

HSP 1 Score: 189.1 bits (479), Expect = 3.0e-48
Identity = 82/145 (56.55%), Postives = 113/145 (77.93%), Query Frame = 0


Query: 14  PGLSVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTCRRKTDTSCDDPPDIDYDTT 73
           PG S+ ++A QCE+C KWR I TQ+EYEDIRS++ E+PF C+ K   SC+D  D++YD++
Sbjct: 48  PGRSIDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKTKEGVSCEDVGDLNYDSS 107

Query: 74  RTWVIDKPNIPKTPKDFKRRLVLRRNFSKLDAYYVTPTGKSVRSFKEMLAFVEANPQYKD 133
           RTWVIDKP +P+TP+ FKR L+LR+++SK+DAYY+TPTGK ++S  E+ AF++AN  YK 
Sbjct: 108 RTWVIDKPGLPRTPRGFKRSLILRKDYSKMDAYYITPTGKKLKSRNEIAAFIDANQDYKY 167

Query: 134 IPISGFSFAVPKVMEETVPESILKE 159
             +  F+F VPKVMEETVP  IL +
Sbjct: 168 ALLGDFNFTVPKVMEETVPSGILSD 192

[Close]

BLAST of Sed0027537.1 vs. TAIR 10
Match: AT5G35330.1 (methyl-CPG-binding domain protein 02 )

HSP 1 Score: 114.4 bits (285), Expect = 9.4e-26
Identity = 65/168 (38.69%), Postives = 92/168 (54.76%), Query Frame = 0


Query: 17  SVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTC----RRKTDTSCDDPPDIDYDT 76
           S+G +  QC  CFKWRL+ + ++YE+IR +L+E PF C      K D SCD P DI  D 
Sbjct: 55  SIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDG 114

Query: 77  TRTWVIDKPNIPKTPKDFKRRLVLRRNFSK--LDAYYVTPTGKSVRSFKEMLAFVEANPQ 136
           TR W IDKPNI + P  ++R L +R        D YYV P+GK +RS  E+  ++  N +
Sbjct: 115 TRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSE 174

Query: 137 Y--KDIPISGFSFAVPKVMEETVPESILKEGLSSAKRMKKSKDESDNT 177
           Y  + + +S FSF +PK +++              KR  +  D  DNT
Sbjct: 175 YIGEGVKLSQFSFQIPKPLQDDYVR----------KRPARLLDSIDNT 212

[Close]

BLAST of Sed0027537.1 vs. TAIR 10
Match: AT5G35330.2 (methyl-CPG-binding domain protein 02 )

HSP 1 Score: 114.4 bits (285), Expect = 9.4e-26
Identity = 65/168 (38.69%), Postives = 92/168 (54.76%), Query Frame = 0


Query: 17  SVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTC----RRKTDTSCDDPPDIDYDT 76
           S+G +  QC  CFKWRL+ + ++YE+IR +L+E PF C      K D SCD P DI  D 
Sbjct: 55  SIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDG 114

Query: 77  TRTWVIDKPNIPKTPKDFKRRLVLRRNFSK--LDAYYVTPTGKSVRSFKEMLAFVEANPQ 136
           TR W IDKPNI + P  ++R L +R        D YYV P+GK +RS  E+  ++  N +
Sbjct: 115 TRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSE 174

Query: 137 Y--KDIPISGFSFAVPKVMEETVPESILKEGLSSAKRMKKSKDESDNT 177
           Y  + + +S FSF +PK +++              KR  +  D  DNT
Sbjct: 175 YIGEGVKLSQFSFQIPKPLQDDYVR----------KRPARLLDSIDNT 212

[Close]

BLAST of Sed0027537.1 vs. TAIR 10
Match: AT5G35330.3 (methyl-CPG-binding domain protein 02 )

HSP 1 Score: 114.4 bits (285), Expect = 9.4e-26
Identity = 65/168 (38.69%), Postives = 92/168 (54.76%), Query Frame = 0


Query: 17  SVGLYAAQCEECFKWRLISTQEEYEDIRSKLIEEPFTC----RRKTDTSCDDPPDIDYDT 76
           S+G +  QC  CFKWRL+ + ++YE+IR +L+E PF C      K D SCD P DI  D 
Sbjct: 55  SIGAFTVQCASCFKWRLMPSMQKYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDG 114

Query: 77  TRTWVIDKPNIPKTPKDFKRRLVLRRNFSK--LDAYYVTPTGKSVRSFKEMLAFVEANPQ 136
           TR W IDKPNI + P  ++R L +R        D YYV P+GK +RS  E+  ++  N +
Sbjct: 115 TRLWAIDKPNISRPPAGWQRLLRIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSE 174

Query: 137 Y--KDIPISGFSFAVPKVMEETVPESILKEGLSSAKRMKKSKDESDNT 177
           Y  + + +S FSF +PK +++              KR  +  D  DNT
Sbjct: 175 YIGEGVKLSQFSFQIPKPLQDDYVR----------KRPARLLDSIDNT 212

The following BLAST results are available for this feature:

BLAST of Sed0027537.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023513509.1	4.8e-80	87.36	methyl-CpG-binding domain-containing protein 4-like isoform X1 [Cucurbita pepo s...	[more]
XP_023004659.1	8.1e-80	87.36	methyl-CpG-binding domain-containing protein 4-like isoform X2 [Cucurbita maxima...	[more]
XP_022960475.1	3.1e-79	87.36	methyl-CpG-binding domain-containing protein 4-like isoform X2 [Cucurbita moscha...	[more]
XP_038896997.1	9.9e-78	84.27	methyl-CpG-binding domain-containing protein 4-like [Benincasa hispida]	[more]
XP_023513510.1	4.2e-76	87.12	methyl-CpG-binding domain-containing protein 4-like isoform X2 [Cucurbita pepo s...	[more]

BLAST of Sed0027537.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYB9	7.5e-52	61.07	Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q5XEN5	4.2e-47	56.55	Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q8LA53	1.3e-24	38.69	Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q4PSK1	8.0e-22	43.85	Methyl-CpG-binding domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9FZP6	6.2e-14	32.48	Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Sed0027537.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KWY1	3.9e-80	87.36	methyl-CpG-binding domain-containing protein 4-like isoform X2 OS=Cucurbita maxi...	[more]
A0A6J1H964	1.5e-79	87.36	methyl-CpG-binding domain-containing protein 4-like isoform X2 OS=Cucurbita mosc...	[more]
A0A6J1KV79	3.5e-76	87.12	methyl-CpG-binding domain-containing protein 4-like isoform X3 OS=Cucurbita maxi...	[more]
A0A6J1H7I8	1.3e-75	87.12	methyl-CpG-binding domain-containing protein 4-like isoform X3 OS=Cucurbita mosc...	[more]
A0A6J1L071	1.1e-74	88.05	methyl-CpG-binding domain-containing protein 4-like isoform X1 OS=Cucurbita maxi...	[more]

BLAST of Sed0027537.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63030.1	5.3e-53	61.07	methyl-CPG-binding domain 4	[more]
AT4G22745.1	3.0e-48	56.55	methyl-CPG-binding domain 1	[more]
AT5G35330.1	9.4e-26	38.69	methyl-CPG-binding domain protein 02	[more]
AT5G35330.2	9.4e-26	38.69	methyl-CPG-binding domain protein 02	[more]
AT5G35330.3	9.4e-26	38.69	methyl-CPG-binding domain protein 02	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001739	Methyl-CpG DNA binding	SMART	SM00391	TAM_2	coord: 78..151 e-value: 4.3E-7 score: 39.6
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 85..147 e-value: 1.2E-11 score: 44.1
IPR001739	Methyl-CpG DNA binding	PROSITE	PS50982	MBD	coord: 76..146 score: 12.681737
IPR011124	Zinc finger, CW-type	PFAM	PF07496	zf-CW	coord: 21..67 e-value: 4.3E-11 score: 42.6
IPR011124	Zinc finger, CW-type	PROSITE	PS51050	ZF_CW	coord: 15..70 score: 11.542994
None	No IPR available	GENE3D	3.30.40.100		coord: 20..68 e-value: 4.0E-6 score: 28.3
None	No IPR available	GENE3D	3.30.890.10		coord: 69..176 e-value: 1.8E-11 score: 46.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..177
None	No IPR available	PANTHER	PTHR12396	METHYL-CPG BINDING PROTEIN, MBD	coord: 12..174
None	No IPR available	PANTHER	PTHR12396:SF10	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 1-RELATED	coord: 12..174
None	No IPR available	CDD	cd01396	MeCP2_MBD	coord: 80..152 e-value: 1.20344E-15 score: 66.2421
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 58..151

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0027537	Sed0027537	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0027537.1-cds	Sed0027537.1-cds-LG09:35923008..35923505	CDS
Sed0027537.1-cds	Sed0027537.1-cds-LG09:35925953..35925988	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0027537.1-exon	Sed0027537.1-exon-LG09:35923008..35923505	exon
Sed0027537.1-exon	Sed0027537.1-exon-LG09:35925953..35926066	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0027537.1-five_prime_utr	Sed0027537.1-five_prime_utr-LG09:35925989..35926066	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0027537.1	Sed0027537.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding