Sed0024949.1 (mRNA) Chayote v1

Overview
NameSed0024949.1
TypemRNA
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
LocationLG06: 11554215 .. 11558340 (+)
Sequence length1014
RNA-Seq ExpressionSed0024949.1
SyntenySed0024949.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAGAACTCCAATGACCAATGGTGGAAAATGGAGAATAGTGATCGAAAGGAAAAATTACTGATCGATGGGGTGCGTCTTGTGATACAACGGTCGGATTTAACCACGGAGGTGCAGTCGAAGTCGCAGAATGTAGAAGCTACGGAGGGCAGTCAGAGATCTAGGGTGGAAGAGACAATGATGGGAGCTATTGCATATGATGGTGCGGGAAATATATTGGGATTTGGAAAAAAAGGCCTTTTAGGGCCTGAGGAGATGGAAAGTCGTCACAAAAGGGATGGTCTAGATTTTATTGGTAAAATCGGGAATAGTTCAAATGAGGGGCTGTTGTCTGAAGGGAGGAAAAAAGTCATCTTAAAAACCAATGAAGAGGGGCATGACTCAGTAGATTATCCCACTAAATCCACGAGGAATCTCAATAGTGCCAAAACCCCAATGGCTAGAAAGGACCGAGAAGAATGGGAAAAATCTGGTTTGAAGCTTAATGCTCCTGTGGAGTCAGTAAATGCGAGTGAGCAAAATAGTATAGGGAAGCTCTTGGAGGCTGACATGGAGCTTGGTAAACAACGCTCAGCAACAGGGGCTAATGAATTTCATCCACCCATAAACAAAATAAAAGGGGATAAATGGAAAAGAAAGGCAAGAGCCAAAGCAAGCTTGAGTGATATGGATCAGAGGATAGAAGATGATCAAATCAGAGACTCAATGATATGTGGTAAGAAACATGGTCTGGAAGGGCTGTCCGAGGAAAATGGGAAAAAAAGAGCGCGAGCTATTGACGTTGAATTGATCAACGGGATATCGGCGGAGGCTGTTGTACAGCCCCGCCGGACGCAATGAAAATTTTATGTTGGAATGTACGGGGGTTGGGGAATCCTCGTACATTCACTGCTCTCCGCCATGAAGTGCAGAAAGAAAATCCTCAGGTGGTCTTCCTTTCTGAGACAAAAGGAGGGAAAATGCTAGCGGATAAAACAAAAATTGCGTTAAATTTTGAAAATTGCTTTTGTGTTCCTAGTGAAGGCTTGAGTGGAGGGCTTTTGATGTTATGGAACAAGGAGATTGATGCTCAAGTGGTGTCTTATTCGCTCGGGCATATTGACATGATGATAAAAGATATTCTAGGTGGTTGGAGATTTACGGGGTTCTATGGGAATCCGGTGGCAACAAACAGGGTGCACTCGTGGGACCTATTGAAAAGACTTTATTCTCAATCATCGGCTCCCTGGATTGTTTCCGGGGATTTCAATGAGGTTTTATGCGAGTCTGAGCATTCTAATGGAAGTAAGAGATGCCTTCAAAGTATTTTGAGATTCAGAGAAGTGGTGGATGAATGTTCTCTTATCGATCCGGGCCATCTTTGGAGACAATTTTACTTGGAGTCGAAATAAAAATGTGTCAAGTCTTCGTTCGAGTTCGCTTTGGATAGGTTTTTGTTTTCTCAATCTTTATCTCAATATATTGATTTTATGCGTGTTGATCATCTTAATTATCACTTCTCCGATCATAGGCCAATATTAGCTTCTTTTAATCTGGTTATCTATTCTCGCCTTCTCTTATAAGGGTGGTGGGAATAGAAAATCAATTTTGAGATTTGAAAATATTTGGACTAACTTTGAGGAATGCAGAACATTATTAAGGCCAATTGGGGTCCTCTAAAGAAATTTGGATCTATGGCAAACCTTTTTAATGAAAATGTTAGATGCGACTTAAGCGAGTTGGTAGGTGGAACAAAAGAAGGCTTTTGGGCTCGATTAAAGAGGCAGTTGCTCGTAAAGAGAAAGAGCTAGCTTTCCTGGTTAATAGCAACAGAGGAGAGTTCTCAGACGAAATAAGAGCTATTGAGCGCCAAATTGATTCATTATTACTTGAAGAGGAGATGTACTGGCATCAAAGATCTCGTGAAGATTGGATTAAGTGGGGTGATAGAAATACCAAATGGTTCCATATGAGAGCTTCCCGGAGGAAGAAAAGGAACAAGATTGAAAAATTGTTTATTAAGGAGGGCATGTGGGCGAGAGGAGGAAGAGAGTATCACCAAGGTTGCCTACGACTATTTTGCAAAGATTTATGAAAGACGGTCTGAGTCGGAAGCTGACGTGATAAAAATTTTGGAAGGAGTTAATCGGGTGATTTCGAATGAGGATAACTTATCCCTTGATAGGCTTTTCACTAAGGAGGAGGTGGAGGTGGCTTTAAAAAGTATGAAACCCTCAAAAGCTCCTGGGCCGGATGGTACAAATGCTATGTTTTTTCAAAGATATTGGGACATAGTGGGCAAAGAGGTGATCGAGACGTGTTTGGGAGTGCTTAATGAGGATAAGGAGTTGGGGCCTTTGAATAAAACTTTTATCGCTTTAATTCCCAAAACTCACAACCCCTTGAAAATGGAAGAATTTCGGCCGATTAGTTTGTGCAACACCATCTACAAAATTATTGCTAAGATGCTGGCTAATAGGTTAAAAATGGTGCTTAACAAAGTTATTTCGATCAATCAGGCCGCCTTTGTGCCGGGGAGAATGATTTCTGATAATGTGGTTATTGGTTTTGAATGTATTCATTCCATTAATAAAAAAAGGAAAGGGAAGGAGGGCTTTGTGGCATTAAAGCTAGATATGAGTAAAGCCTATGATAGGGTTAGCTGGCATTTTATCATTAAAATGATGGGGAAAATGGGTTTCAGCGAAAAGTGGATCAAAAAAATATATTCGTGTATATCATCTGTTAGTTTTGCGGTACTCATTAATGGTTCGCCTTCTGAGGAGTTCTCGTCAGGAAGAGGTGCGAGACAAGGATCCTCTTTCCCCTTATCTTTTCCTAATTTGTCCTTGAAGGATTGACATCACGGCTAAATAGGGGAGAATCCTTAAATATGTTTGAGGTCTTAAAATTAATAGATTCTCGCCTTCCATATCCCATCTTTTCTTCTTGACGATAGTTTTTTGTTTTTAGGGCAACTCAAAGGGATTGTAAGTATATTAGAGAAATTTTAGAATCGTATGAGAAAGCTTCTGGTCAAACCATTAATCTGGAAAAATCAACGATGATGTTCAGCAAGAATGTGCGGTTAGCTGATAAAATTGCTTTAAGTGGGCATATTGGGGTCAGTGTGGATTCGAATCTTGGGACATATTTGGGGATGCCCTCAATGAACAAAAAAAATAAGAACGATTTATTTTGCTCTTTGAAGGTGAGGATAAAAAATTGCCTTCAAAAGTGGAAAGGCAAAATATTGTCAAAAGGAGGTAAGGAAGTACTTATTAAAGCAGTGGCCCAAGCAATCCCTACTTATATGATGAGTTGTTTTAGGCTCCCAAAAGGTATAAGTGAGGAGATTGACAAAGATTATGCAAATTTCTGGTGGGGTCATGATAAAGATCGAAAGAGAGTGCATTGGGGGAGCTGGAAAAACCTTGGGATGAGCAAGGAAAGGGGGGGGCTGGGATTTAGAAGTCTGAGTCTCTTTAATCAAGCGATGTTGGCAAAACAAAGCTGGAGGATTATCCGGAACCCAGAAAGTCTCTTGTTTCGTATTTTGAGGGGGAAGTATTTTAAAGATGGTGATTTTTTAAGGGCGAGGGCTGGAAATTCTCCATCCCTAACCTGGCGGAGTATTTTATGGGGAAGGGATCTTTTCCATCATGGTTATCGGTGGAAAGTGGGCAATGGCCATAGCATTGTAATTGGAAGAGACCCTTGGTTGAATAGTGATATTTTTAAAACTCCGTTAAGTGTTCAGGATCCATGGAAAGATCTTAAAGTGGCTAACCTTATTGGAAATAATTTAGGTTGGGATAAAAGAAAAATTTATTCCATTTTTTCGAAAGAGGAAGCTGATTGTATTGTTAAAATTCCTTTGGGTTCTTCCTTAGGAGAAGACGAGGTTATTTGGCACGCAAGCTCAAATGGGGTCTTTAGTGTAAAAAGTGCTTATCACCTTGCAATGAATTTATCAAATTTTGATAAGGCTTCTCCCTCTAACAATTCCATGATGGCCAAGATATGGAAATCCTTTTGGAAGGTTGAGATTGCTCCTATGATAAAAATGGGGGCACAGAAAGTGTTAAAAAATTTATTCCATCAAAAGCGAACATTCAAGCGAAGGAGTGGATATCAACAGTAG

mRNA sequence

ATGGAAGAGAACTCCAATGACCAATGGTGGAAAATGGAGAATAGTGATCGAAAGGAAAAATTACTGATCGATGGGGTGCGTCTTGTGATACAACGGTCGGATTTAACCACGGAGGTGCAGTCGAAGTCGCAGAATGTAGAAGCTACGGAGGGCAGTCAGAGATCTAGGGTGGAAGAGACAATGATGGGAGCTATTGCATATGATGGTGCGGGAAATATATTGGGATTTGGAAAAAAAGGCCTTTTAGGGCCTGAGGAGATGGAAAGTCGTCACAAAAGGGATGGTCTAGATTTTATTGGTAAAATCGGGAATAGTTCAAATGAGGGGCTGTTGTCTGAAGGGAGGAAAAAAGTCATCTTAAAAACCAATGAAGAGGGGCATGACTCAGTAGATTATCCCACTAAATCCACGAGGAATCTCAATAGTGCCAAAACCCCAATGGCTAGAAAGGACCGAGAAGAATGGGAAAAATCTGGTTTGAAGCTTAATGCTCCTGTGGAGTCAGTAAATGCGAGTGAGCAAAATAGTATAGGGAAGCTCTTGGAGGCTGACATGGAGCTTGGTAAACAACGCTCAGCAACAGGGGCTAATGAATTTCATCCACCCATAAACAAAATAAAAGGGGATAAATGGAAAAGAAAGGCAAGAGCCAAAGCAAGCTTGAGTGATATGGATCAGAGGATAGAAGATGATCAAATCAGAGACTCAATGATATGTGAGGAAGCTGATTGTATTGTTAAAATTCCTTTGGGTTCTTCCTTAGGAGAAGACGAGGTTATTTGGCACGCAAGCTCAAATGGGGTCTTTAGTGTAAAAAGTGCTTATCACCTTGCAATGAATTTATCAAATTTTGATAAGGCTTCTCCCTCTAACAATTCCATGATGGCCAAGATATGGAAATCCTTTTGGAAGGTTGAGATTGCTCCTATGATAAAAATGGGGGCACAGAAAGTGTTAAAAAATTTATTCCATCAAAAGCGAACATTCAAGCGAAGGAGTGGATATCAACAGTAG

Coding sequence (CDS)

ATGGAAGAGAACTCCAATGACCAATGGTGGAAAATGGAGAATAGTGATCGAAAGGAAAAATTACTGATCGATGGGGTGCGTCTTGTGATACAACGGTCGGATTTAACCACGGAGGTGCAGTCGAAGTCGCAGAATGTAGAAGCTACGGAGGGCAGTCAGAGATCTAGGGTGGAAGAGACAATGATGGGAGCTATTGCATATGATGGTGCGGGAAATATATTGGGATTTGGAAAAAAAGGCCTTTTAGGGCCTGAGGAGATGGAAAGTCGTCACAAAAGGGATGGTCTAGATTTTATTGGTAAAATCGGGAATAGTTCAAATGAGGGGCTGTTGTCTGAAGGGAGGAAAAAAGTCATCTTAAAAACCAATGAAGAGGGGCATGACTCAGTAGATTATCCCACTAAATCCACGAGGAATCTCAATAGTGCCAAAACCCCAATGGCTAGAAAGGACCGAGAAGAATGGGAAAAATCTGGTTTGAAGCTTAATGCTCCTGTGGAGTCAGTAAATGCGAGTGAGCAAAATAGTATAGGGAAGCTCTTGGAGGCTGACATGGAGCTTGGTAAACAACGCTCAGCAACAGGGGCTAATGAATTTCATCCACCCATAAACAAAATAAAAGGGGATAAATGGAAAAGAAAGGCAAGAGCCAAAGCAAGCTTGAGTGATATGGATCAGAGGATAGAAGATGATCAAATCAGAGACTCAATGATATGTGAGGAAGCTGATTGTATTGTTAAAATTCCTTTGGGTTCTTCCTTAGGAGAAGACGAGGTTATTTGGCACGCAAGCTCAAATGGGGTCTTTAGTGTAAAAAGTGCTTATCACCTTGCAATGAATTTATCAAATTTTGATAAGGCTTCTCCCTCTAACAATTCCATGATGGCCAAGATATGGAAATCCTTTTGGAAGGTTGAGATTGCTCCTATGATAAAAATGGGGGCACAGAAAGTGTTAAAAAATTTATTCCATCAAAAGCGAACATTCAAGCGAAGGAGTGGATATCAACAGTAG

Protein sequence

MEENSNDQWWKMENSDRKEKLLIDGVRLVIQRSDLTTEVQSKSQNVEATEGSQRSRVEETMMGAIAYDGAGNILGFGKKGLLGPEEMESRHKRDGLDFIGKIGNSSNEGLLSEGRKKVILKTNEEGHDSVDYPTKSTRNLNSAKTPMARKDREEWEKSGLKLNAPVESVNASEQNSIGKLLEADMELGKQRSATGANEFHPPINKIKGDKWKRKARAKASLSDMDQRIEDDQIRDSMICEEADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKASPSNNSMMAKIWKSFWKVEIAPMIKMGAQKVLKNLFHQKRTFKRRSGYQQ
Homology
[Close]
BLAST of Sed0024949.1 vs. NCBI nr
Match: KAF5443010.1 (hypothetical protein F2P56_035607 [Juglans regia])

HSP 1 Score: 75.5 bits (184), Expect = 9.9e-10
Identity = 47/145 (32.41%), Postives = 79/145 (54.48%), Query Frame = 0 

Query: 205  KIKGDKWKRK---ARAKASLSDMD------------QRIEDDQIRDSMIC-EEADCIVKI 264
            +I GDKW  K   +  K+ +S +D            ++  + ++ + + C EEAD I +I
Sbjct: 1020 RIWGDKWLPKTIPSAVKSPISHLDGNAKVQELLKPGEKEWNMELVEHLFCKEEADIIAQI 1079

Query: 265  PLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKASPSNNSMMAKIWKSFWKVEIA 324
            PL +S+  D++IW  +S G F+VKSAYHL   L    K  PS++  + ++WK+ W++++ 
Sbjct: 1080 PLSTSISPDQLIWKGTSTGFFTVKSAYHLHQELIQDTKGQPSSSHNLKEVWKTLWQLQVT 1139

Query: 325  PMIKMGAQKVLKN-LFHQKRTFKRR 333
            P  K+   +   N L  Q   FKR+
Sbjct: 1140 PGEKVFLWRACHNALPTQSNLFKRK 1164

[Close]
BLAST of Sed0024949.1 vs. NCBI nr
Match: XP_018805736.2 (uncharacterized protein LOC108979499 [Juglans regia] >KAF5465338.1 hypothetical protein F2P56_015356 [Juglans regia])

HSP 1 Score: 73.2 bits (178), Expect = 4.9e-09
Identity = 48/145 (33.10%), Postives = 78/145 (53.79%), Query Frame = 0 

Query: 205 KIKGDKWKRK---ARAKASLSDMD------------QRIEDDQIRDSMIC-EEADCIVKI 264
           +I GDKW  K   +  K+ +S +D            ++  + ++ + + C EEAD IV+I
Sbjct: 804 RIWGDKWLPKTFPSAVKSPISHLDGNAKVQELLKPGEKEWNMELVEHLFCKEEADIIVQI 863

Query: 265 PLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKASPSNNSMMAKIWKSFWKVEIA 324
           PL +S   D++IW  +S G F+VKSAYHL   L    K  PS++    ++WK+ W++++ 
Sbjct: 864 PLSTSNRPDQLIWKGTSTGFFTVKSAYHLHQELIQDTKGQPSSSHNSKEVWKTLWQLQVT 923

Query: 325 PMIKMGAQKVLKN-LFHQKRTFKRR 333
           P  K+   +   N L  Q   FKR+
Sbjct: 924 PGEKVFLWRACHNALPTQSNLFKRK 948

[Close]
BLAST of Sed0024949.1 vs. NCBI nr
Match: XP_030922958.1 (uncharacterized protein LOC115949824 [Quercus lobata])

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-08
Identity = 42/105 (40.00%), Postives = 61/105 (58.10%), Query Frame = 0 

Query: 219 ASLSDMDQR-IEDDQIRDSMICEEADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHL 278
           +SL D D +  + + +R   +  EAD I+KIPL   L ED +IW  +  GVF+VKSAYH+
Sbjct: 711 SSLIDQDTKWWKANVVRTLFLPFEADMILKIPLSQRLPEDSLIWIGNKRGVFTVKSAYHI 770

Query: 279 AMNL-SNFDKASPSNNSMMAKIWKSFWKVEIAPMIKMGAQKVLKN 322
           A  L S+ D    S+    + IWK  WK+++ P IK+ A +   N
Sbjct: 771 AAKLQSDKDLGESSSGDSKSIIWKKLWKMKLPPKIKIFAWRACAN 815

[Close]
BLAST of Sed0024949.1 vs. NCBI nr
Match: XP_040996249.1 (uncharacterized protein LOC121242444 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 70.9 bits (172), Expect = 2.4e-08
Identity = 39/132 (29.55%), Postives = 74/132 (56.06%), Query Frame = 0 

Query: 202 PINKIKGDKWKRKARAKASLSDMDQRIEDDQIRDSMICEEADCIVKIPLGSSLGEDEVIW 261
           PI+++ G+     A+ +  L   ++R   + +      E+AD I +IP+ SS   D++IW
Sbjct: 749 PISQLDGN-----AKVQEMLKPGEKRWNMELVEHIFCKEDADLIAQIPISSSTSPDQLIW 808

Query: 262 HASSNGVFSVKSAYHLAMNLSNFDKASPSNNSMMAKIWKSFWKVEIAPMIKMGAQKVLKN 321
             +S+G F+VKSAYH+   ++   K  PS++    ++WK+ W+++++P  K+   +   N
Sbjct: 809 KGTSSGFFTVKSAYHMHQEMNQALKGQPSSSHNFKEVWKTLWQLQVSPGEKVFLWRACLN 868

Query: 322 -LFHQKRTFKRR 333
            L  Q   FK++
Sbjct: 869 ALPTQSNLFKKK 875

[Close]
BLAST of Sed0024949.1 vs. NCBI nr
Match: KAG8387873.1 (hypothetical protein BUALT_Bualt02G0066800 [Buddleja alternifolia])

HSP 1 Score: 70.1 bits (170), Expect = 4.2e-08
Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 0 

Query: 230 DDQIRDSMIC-EEADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKAS 289
           D  + D + C E+A  I  IPLGS+   D +IW+ SS+G F+V+SAYHLA ++     AS
Sbjct: 130 DSDLIDRVFCPEDASIIKTIPLGSNNNRDRLIWNFSSSGFFAVRSAYHLAKDIDRRRAAS 189

Query: 290 PSNNSMMAKIWKSFWKVEIAPMIKMGAQKVLKN 322
            SN    +  W+  WK  + P I++ A K  K+
Sbjct: 190 SSNPKPPSLSWQFIWKTRVPPKIRVFAWKACKD 222

[Close]
BLAST of Sed0024949.1 vs. ExPASy TrEMBL
Match: A0A2N9I509 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46981 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.7e-10
Identity = 49/135 (36.30%), Postives = 72/135 (53.33%), Query Frame = 0 

Query: 205  KIKGDKWK------RKARAKASLSD---MDQRIED-------DQIRDSMICEEADCIVKI 264
            K+  DKW       +       LSD   +DQ IE        D +  S    +A+ I KI
Sbjct: 1527 KVWHDKWLPTPSTFKVISPPGELSDGATVDQLIERGTMRWKIDVLHRSFCPRDAEIIQKI 1586

Query: 265  PLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKAS-PSNNSMMAKIWKSFWKVEI 323
            PL S   +D +IW AS NGVFSV+SAYH+ ++ +N D+ S  S+ S+ ++ W S W V++
Sbjct: 1587 PLSSRCPDDTLIWTASKNGVFSVRSAYHMLLSAANRDEPSVSSSRSLESQFWSSLWSVQV 1646

[Close]
BLAST of Sed0024949.1 vs. ExPASy TrEMBL
Match: A0A803PYN5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-09
Identity = 38/93 (40.86%), Postives = 57/93 (61.29%), Query Frame = 0 

Query: 241  EADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKASPSNNSMMAKIWK 300
            + D I+ IPL    G D +IWH SSNG++SVKS ++LA NL     +SPSN   + + WK
Sbjct: 1340 DIDRILTIPLSYFAGHDRLIWHHSSNGIYSVKSGFYLATNLEEQHSSSPSNK--LCEWWK 1399

Query: 301  SFWKVEIAPMIKMGAQKVLKNLFHQKRT-FKRR 333
             FW +++ P I++ + KV +N+       FKR+
Sbjct: 1400 FFWNLKLPPKIRIFSWKVFQNILPTAAALFKRK 1430

[Close]
BLAST of Sed0024949.1 vs. ExPASy TrEMBL
Match: A0A2I4DF11 (uncharacterized protein LOC108979499 OS=Juglans regia OX=51240 GN=LOC108979499 PE=4 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-09
Identity = 48/145 (33.10%), Postives = 78/145 (53.79%), Query Frame = 0 

Query: 205 KIKGDKWKRK---ARAKASLSDMD------------QRIEDDQIRDSMIC-EEADCIVKI 264
           +I GDKW  K   +  K+ +S +D            ++  + ++ + + C EEAD IV+I
Sbjct: 804 RIWGDKWLPKTFPSAVKSPISHLDGNAKVQELLKPGEKEWNMELVEHLFCKEEADIIVQI 863

Query: 265 PLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKASPSNNSMMAKIWKSFWKVEIA 324
           PL +S   D++IW  +S G F+VKSAYHL   L    K  PS++    ++WK+ W++++ 
Sbjct: 864 PLSTSNRPDQLIWKGTSTGFFTVKSAYHLHQELIQDTKGQPSSSHNSKEVWKTLWQLQVT 923

Query: 325 PMIKMGAQKVLKN-LFHQKRTFKRR 333
           P  K+   +   N L  Q   FKR+
Sbjct: 924 PGEKVFLWRACHNALPTQSNLFKRK 948

[Close]
BLAST of Sed0024949.1 vs. ExPASy TrEMBL
Match: A0A803P5M6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-08
Identity = 32/82 (39.02%), Postives = 52/82 (63.41%), Query Frame = 0 

Query: 241  EADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKASPSNNSMMAKIWK 300
            + D I+ IPL    G D ++WH S NG++SVK+ +HLA  L   D+ S S ++  ++ WK
Sbjct: 934  DIDRILSIPLAYFAGTDRLVWHHSPNGIYSVKTGFHLATTLE--DQNSSSTSNKQSEWWK 993

Query: 301  SFWKVEIAPMIKMGAQKVLKNL 323
             FW +++ P I++ A KV +N+
Sbjct: 994  FFWNLKLPPKIRIFAWKVFQNI 1013

[Close]
BLAST of Sed0024949.1 vs. ExPASy TrEMBL
Match: A0A803NML1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-08
Identity = 32/82 (39.02%), Postives = 52/82 (63.41%), Query Frame = 0 

Query: 241  EADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKASPSNNSMMAKIWK 300
            + D I+ IPL    G D ++WH S NG++SVK+ +HLA  L   D+ S S ++  ++ WK
Sbjct: 1236 DIDRILSIPLAYFAGTDRLVWHHSPNGIYSVKTGFHLATTLE--DQNSSSTSNKQSEWWK 1295

Query: 301  SFWKVEIAPMIKMGAQKVLKNL 323
             FW +++ P I++ A KV +N+
Sbjct: 1296 FFWNLKLPPKIRIFAWKVFQNI 1315

The following BLAST results are available for this feature:
BLAST of Sed0024949.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF5443010.19.9e-1032.41hypothetical protein F2P56_035607 [Juglans regia][more]
XP_018805736.24.9e-0933.10uncharacterized protein LOC108979499 [Juglans regia] >KAF5465338.1 hypothetical ... [more]
XP_030922958.11.1e-0840.00uncharacterized protein LOC115949824 [Quercus lobata][more]
XP_040996249.12.4e-0829.55uncharacterized protein LOC121242444 [Juglans microcarpa x Juglans regia][more]
KAG8387873.14.2e-0839.78hypothetical protein BUALT_Bualt02G0066800 [Buddleja alternifolia][more]
BLAST of Sed0024949.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0024949.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2N9I5093.7e-1036.30Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS46981 PE=3 SV=1[more]
A0A803PYN52.4e-0940.86Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A2I4DF112.4e-0933.10uncharacterized protein LOC108979499 OS=Juglans regia OX=51240 GN=LOC108979499 P... [more]
A0A803P5M62.6e-0839.02Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803NML12.6e-0839.02Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
BLAST of Sed0024949.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..151

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Sed0024949Sed0024949gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0024949.1-exonSed0024949.1-exon-LG06:11554215..11554932exon
Sed0024949.1-exonSed0024949.1-exon-LG06:11558045..11558340exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0024949.1-cdsSed0024949.1-cds-LG06:11554215..11554932CDS
Sed0024949.1-cdsSed0024949.1-cds-LG06:11558045..11558340CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Sed0024949.1Sed0024949.1-proteinpolypeptide