Sed0024838.1 (mRNA) Chayote v1

Overview


Name	Sed0024838.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	ethylene-responsive transcription factor ERF037-like
Location	LG03: 11404912 .. 11405640 (+)
Sequence length	588
RNA-Seq Expression	Sed0024838.1
Synteny	Sed0024838.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAATGCCGCCGCGCCGCAGGCCGACTCCGGTGCTGCCAATTCCTCGTCCTCCTCCTACTCCCTCAATCAAGGTGTTGTTAAGTCAAAGCGTCCTCGCGACATTAACAACACCAACAACAACAACAACAACAACAATCGACACCCAGTTTATCGCGGTGTCCGAATGAGGGTTTGGGGCAAATGGGTGTCGGAAATTCGAGAGCCTAAAAAGAAGAGTCGAATCTGGTTGGGCACCTTCGCCACGCCTGAAATGGCGGCACGTGCTCACGACGTTGCTTCCCTTTCCATCAAAGGCAACTCTGCTATCCTAAATTTCCCTGAACTCGCTTCCTCATTCCCTCGCCCGGCCTCCTCCTCTCCCCGCGACATACAATCCGCTGCCACCCTTGCGGCCTCAATGGTCCCTCCACCACCGCCACCACAACCACCGTTATCGCCTCCATCGCCGTTGTTCTCCTGGTCGTCTGAGTTGGATGATTCGACGTCTGAGGAATTGAGTGAAATTGTGGAGCTGCCGAGTTTGGGAACGAGTTATGAGGAGTCTAGCGAATTGGTGACCGAGTTCGTGTGTGACGAGTGGCTGTACAGTTATGGGCCATGGTATCAAAATCAAAGCACAAGGGAAGAAGAAGAAGTTTATGAGTATTTAAGAGATCAAATGGCAATGGTTGAAACAGAATGTGTGAATCCTGCTGCATTTCAATCCTTACCTTTCTCCTGGTAA

mRNA sequence

ATGGCCAATGCCGCCGCGCCGCAGGCCGACTCCGGTGCTGCCAATTCCTCGTCCTCCTCCTACTCCCTCAATCAAGGTAGTCGAATCTGGTTGGGCACCTTCGCCACGCCTGAAATGGCGGCACGTGCTCACGACGTTGCTTCCCTTTCCATCAAAGGCAACTCTGCTATCCTAAATTTCCCTGAACTCGCTTCCTCATTCCCTCGCCCGGCCTCCTCCTCTCCCCGCGACATACAATCCGCTGCCACCCTTGCGGCCTCAATGGTCCCTCCACCACCGCCACCACAACCACCGTTATCGCCTCCATCGCCGTTGTTCTCCTGGTCGTCTGAGTTGGATGATTCGACGTCTGAGGAATTGAGTGAAATTGTGGAGCTGCCGAGTTTGGGAACGAGTTATGAGGAGTCTAGCGAATTGGTGACCGAGTTCGTGTGTGACGAGTGGCTGTACAGTTATGGGCCATGGTATCAAAATCAAAGCACAAGGGAAGAAGAAGAAGTTTATGAGTATTTAAGAGATCAAATGGCAATGGTTGAAACAGAATGTGTGAATCCTGCTGCATTTCAATCCTTACCTTTCTCCTGGTAA

Coding sequence (CDS)

ATGGCCAATGCCGCCGCGCCGCAGGCCGACTCCGGTGCTGCCAATTCCTCGTCCTCCTCCTACTCCCTCAATCAAGGTAGTCGAATCTGGTTGGGCACCTTCGCCACGCCTGAAATGGCGGCACGTGCTCACGACGTTGCTTCCCTTTCCATCAAAGGCAACTCTGCTATCCTAAATTTCCCTGAACTCGCTTCCTCATTCCCTCGCCCGGCCTCCTCCTCTCCCCGCGACATACAATCCGCTGCCACCCTTGCGGCCTCAATGGTCCCTCCACCACCGCCACCACAACCACCGTTATCGCCTCCATCGCCGTTGTTCTCCTGGTCGTCTGAGTTGGATGATTCGACGTCTGAGGAATTGAGTGAAATTGTGGAGCTGCCGAGTTTGGGAACGAGTTATGAGGAGTCTAGCGAATTGGTGACCGAGTTCGTGTGTGACGAGTGGCTGTACAGTTATGGGCCATGGTATCAAAATCAAAGCACAAGGGAAGAAGAAGAAGTTTATGAGTATTTAAGAGATCAAATGGCAATGGTTGAAACAGAATGTGTGAATCCTGCTGCATTTCAATCCTTACCTTTCTCCTGGTAA

Protein sequence

MANAAAPQADSGAANSSSSSYSLNQGSRIWLGTFATPEMAARAHDVASLSIKGNSAILNFPELASSFPRPASSSPRDIQSAATLAASMVPPPPPPQPPLSPPSPLFSWSSELDDSTSEELSEIVELPSLGTSYEESSELVTEFVCDEWLYSYGPWYQNQSTREEEEVYEYLRDQMAMVETECVNPAAFQSLPFSW

Homology

[Close]

BLAST of Sed0024838.1 vs. NCBI nr
Match: KAG7021299.1 (Dehydration-responsive element-binding protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 247.3 bits (630), Expect = 1.1e-61
Identity = 138/178 (77.53%), Postives = 145/178 (81.46%), Query Frame = 0


Query: 27  SRIWLGTFATPEMAARAHDVASLSIKGNSAILNFPELASSFPRPASSSPRDIQSAATLAA 86
           SRIWLGTFATPEMAARAHDVA+L+IKGNSAILNFPELA+SFPRP SSSPRD+Q AA LAA
Sbjct: 77  SRIWLGTFATPEMAARAHDVAALTIKGNSAILNFPELAASFPRPVSSSPRDVQFAAGLAA 136

Query: 87  SMVPP---PPPPQPPLSP----PSPLFSWSSELDDSTSEELSEIVELPSLGTSYEESSEL 146
           SM  P   PPPP PPLSP    PSP  S SSELD+ST EELSEIV+LPSLGTSYEES   
Sbjct: 137 SMQLPNVDPPPPPPPLSPSSQSPSPPLSSSSELDESTPEELSEIVKLPSLGTSYEESG-- 196

Query: 147 VTEFVCDEWLYSYGPWYQNQSTR--EEEEVYEYLRDQMAMVETECVNPAAFQSLPFSW 196
             EFVCDEW YS GPWYQNQS R  EEEE YEY RDQM M ETECV PA+FQ LPFSW
Sbjct: 197 --EFVCDEWQYSCGPWYQNQSRREEEEEEAYEYFRDQMVMAETECVIPASFQPLPFSW 250

[Close]

BLAST of Sed0024838.1 vs. NCBI nr
Match: XP_022965898.1 (ethylene-responsive transcription factor ERF037-like [Cucurbita maxima])

HSP 1 Score: 246.5 bits (628), Expect = 1.9e-61
Identity = 138/178 (77.53%), Postives = 145/178 (81.46%), Query Frame = 0


Query: 27  SRIWLGTFATPEMAARAHDVASLSIKGNSAILNFPELASSFPRPASSSPRDIQSAATLAA 86
           SRIWLGTFATPEMAARAHDVA+L+IKGNSAILNFPELA+SFPRP SSSPRD+Q AA LAA
Sbjct: 77  SRIWLGTFATPEMAARAHDVAALTIKGNSAILNFPELAASFPRPVSSSPRDVQFAAGLAA 136

Query: 87  SMVPP---PPPPQPPLSP----PSPLFSWSSELDDSTSEELSEIVELPSLGTSYEESSEL 146
           SM  P   PPPP PPLSP    PSP  S SSELD+ST EELSEIV+LPSLGTSYEES   
Sbjct: 137 SMQLPNVDPPPPPPPLSPSSQSPSPPLSSSSELDESTPEELSEIVKLPSLGTSYEESG-- 196

Query: 147 VTEFVCDEWLYSYGPWYQNQSTR--EEEEVYEYLRDQMAMVETECVNPAAFQSLPFSW 196
             EFVCDEW Y  GPWYQNQS R  EEEE YEY RDQMAM ETECV PA+FQ LPFSW
Sbjct: 197 --EFVCDEWQYICGPWYQNQSRREEEEEEAYEYFRDQMAMAETECVIPASFQPLPFSW 250

[Close]

BLAST of Sed0024838.1 vs. NCBI nr
Match: XP_023536664.1 (ethylene-responsive transcription factor ERF039-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.4 bits (625), Expect = 4.2e-61
Identity = 138/178 (77.53%), Postives = 145/178 (81.46%), Query Frame = 0


Query: 27  SRIWLGTFATPEMAARAHDVASLSIKGNSAILNFPELASSFPRPASSSPRDIQSAATLAA 86
           SRIWLGTFATPEMAARAHDVA+L+IKGNSAILNFPELA+SFPRP SSSPRD+Q AA LAA
Sbjct: 77  SRIWLGTFATPEMAARAHDVAALTIKGNSAILNFPELAASFPRPVSSSPRDVQFAAGLAA 136

Query: 87  SMVPPP---PPPQPPLSP----PSPLFSWSSELDDSTSEELSEIVELPSLGTSYEESSEL 146
           SM  P    PPP PPLSP    PSP  S SSELD+ST EELSEIV+LPSLGTSYEES   
Sbjct: 137 SMQLPNVDLPPPPPPLSPSSQSPSPPLSSSSELDESTPEELSEIVKLPSLGTSYEESG-- 196

Query: 147 VTEFVCDEWLYSYGPWYQNQSTR--EEEEVYEYLRDQMAMVETECVNPAAFQSLPFSW 196
             EFVCDEW YS GPWYQNQS R  EEEE YEY RDQMAM ETECV PA+FQ LPFSW
Sbjct: 197 --EFVCDEWQYSCGPWYQNQSRREEEEEEAYEYFRDQMAMAETECVIPASFQPLPFSW 250

[Close]

BLAST of Sed0024838.1 vs. NCBI nr
Match: KAG6586444.1 (Dehydration-responsive element-binding protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 243.4 bits (620), Expect = 1.6e-60
Identity = 154/253 (60.87%), Postives = 163/253 (64.43%), Query Frame = 0


Query: 1   MANAAAPQADSGAANSSSSSYS-----------LNQG----------------------- 60
           MANA  P+ D G  NSS SS S           L +G                       
Sbjct: 1   MANATVPETDLGGVNSSPSSSSSSSRPKEGGTQLKRGRENSSSSSNDNNRHPIYRGVRMR 60

Query: 61  ---------------SRIWLGTFATPEMAARAHDVASLSIKGNSAILNFPELASSFPRPA 120
                          SRIWLGTFATPEMAARAHDVA+L+IKGNSAILNFPELA+SFPRP 
Sbjct: 61  VWGKWVSEIREPKKKSRIWLGTFATPEMAARAHDVAALTIKGNSAILNFPELAASFPRPV 120

Query: 121 SSSPRDIQSAATLAASMVPP---PPPPQPPLSP----PSPLFSWSSELDDSTSEELSEIV 180
           SSSPRD+Q AA LAASM  P   PPPP PPLSP    PSP  S SSELD+ST EELSEIV
Sbjct: 121 SSSPRDVQFAAGLAASMQLPNVDPPPPPPPLSPSSQSPSPPLSSSSELDESTPEELSEIV 180

Query: 181 ELPSLGTSYEESSELVTEFVCDEWLYSYGPWYQNQSTR--EEEEVYEYLRDQMAMVETEC 196
           +LPSLGTSYEES     EFVCDEW YS GPWYQNQS R  EEEEVYEY RDQM M ETEC
Sbjct: 181 KLPSLGTSYEESG----EFVCDEWQYSCGPWYQNQSRREEEEEEVYEYFRDQMVMAETEC 240

[Close]

BLAST of Sed0024838.1 vs. NCBI nr
Match: XP_022937478.1 (dehydration-responsive element-binding protein 3-like [Cucurbita moschata])

HSP 1 Score: 241.9 bits (616), Expect = 4.6e-60
Identity = 153/253 (60.47%), Postives = 162/253 (64.03%), Query Frame = 0


Query: 1   MANAAAPQADSGAANSSSSSYS-----------LNQG----------------------- 60
           MANA  P+ D G  NSS SS S           L +G                       
Sbjct: 1   MANATVPETDLGGVNSSPSSSSSSSRPKQGGTQLKRGRENSSSSSNDNNRHPIYRGVRMR 60

Query: 61  ---------------SRIWLGTFATPEMAARAHDVASLSIKGNSAILNFPELASSFPRPA 120
                          SRIWLGTFATPEMAARAHDVA+L+IKGNSAILNFPELA+SFPRP 
Sbjct: 61  VWGKWVSEIREPKKKSRIWLGTFATPEMAARAHDVAALTIKGNSAILNFPELAASFPRPV 120

Query: 121 SSSPRDIQSAATLAASMVPP---PPPPQPPLSP----PSPLFSWSSELDDSTSEELSEIV 180
           SSSPRD+Q AA LAASM  P   PPPP PPLSP    PSP  S SSELD+ST EELSEIV
Sbjct: 121 SSSPRDVQFAAGLAASMQLPNVDPPPPPPPLSPSSQSPSPPLSSSSELDESTPEELSEIV 180

Query: 181 ELPSLGTSYEESSELVTEFVCDEWLYSYGPWYQNQSTR--EEEEVYEYLRDQMAMVETEC 196
           +LPSLGTSYEES     EFVCDEW YS GPWYQNQS R  EEEE YEY RDQM M ETEC
Sbjct: 181 KLPSLGTSYEESG----EFVCDEWQYSCGPWYQNQSRREEEEEEAYEYFRDQMVMAETEC 240

[Close]

BLAST of Sed0024838.1 vs. ExPASy Swiss-Prot
Match: O80654 (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana OX=3702 GN=ERF037 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 7.0e-27
Identity = 83/153 (54.25%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 27  SRIWLGTFATPEMAARAHDVASLSIKGNSAILNFPELASSFPRPASSSPRDIQSAATLAA 86
           SRIWLGTF+TPEMAARAHD A+L+IKG SA+LNFPELA+  PRPASSSPRD+Q+AA +AA
Sbjct: 65  SRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFPELATYLPRPASSSPRDVQAAAAVAA 124

Query: 87  SMVPPPPPPQPPLSPP--------------------SPLFSWSSELDDSTSEELSEIVEL 146
           +M   P      +S P                    S   S SSE   ST+EELSEIVEL
Sbjct: 125 AMDFSPSSSSLVVSDPTTVIAPAETQLSSSSYSTCTSSSLSPSSEEAASTAEELSEIVEL 184

Query: 147 PSLGTSYEESSELVTEFVCDEWLY-SYGPWYQN 159
           PSL TSY+ES   ++EFV  +  Y    PWY N
Sbjct: 185 PSLETSYDES---LSEFVYVDSAYPPSSPWYIN 214

[Close]

BLAST of Sed0024838.1 vs. ExPASy Swiss-Prot
Match: Q9LYD3 (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DREB3 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-25
Identity = 85/145 (58.62%), Postives = 94/145 (64.83%), Query Frame = 0


Query: 27  SRIWLGTFATPEMAARAHDVASLSIKGNSAILNFPELASSFPRPASSSPRDIQSAATLAA 86
           SRIWLGTF TPEMAARAHDVA+LSIKG +AILNFPELA SFPRP S SPRDIQ+AA  AA
Sbjct: 73  SRIWLGTFPTPEMAARAHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAA 132

Query: 87  SMVPPPPPPQPPLSPPSPLFSWSS--------ELDDSTSEELSEIVELPSLGTSYE-ESS 146
            M  P        S  S L S SS        +L  + SEEL EIVELPSLG SY+ +S+
Sbjct: 133 HM-EPTTSFSSSTSSSSSLSSTSSLESLVLVMDLSRTESEELGEIVELPSLGASYDVDSA 192

Query: 147 ELVTEFV----CDEWLYSYGPWYQN 159
            L  EFV     D  LY   PW Q+
Sbjct: 193 NLGNEFVFYDSVDYCLYP-PPWGQS 215

[Close]

BLAST of Sed0024838.1 vs. ExPASy Swiss-Prot
Match: Q39127 (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN=TINY PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-24
Identity = 77/138 (55.80%), Postives = 87/138 (63.04%), Query Frame = 0


Query: 27  SRIWLGTFATPEMAARAHDVASLSIKGNSAILNFPELASSFPRPASSSPRDIQSAATLAA 86
           SRIWLGTF +PEMAARAHDVA+LSIKG SAILNFP+LA SFPRP+S SPRDIQ AA  AA
Sbjct: 58  SRIWLGTFPSPEMAARAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAA 117

Query: 87  SMVPPPPPPQPPLSPPSPLFSWSSELDDST----------SEELSEIVELPSLGTSYEES 146
            M           S  S L   SS+   S           SEEL EIVELPSLG+SY+  
Sbjct: 118 HM-----ETSQSFSSSSSLTFSSSQSSSSLESLVSSSATGSEELGEIVELPSLGSSYDGL 177

Query: 147 SELVTEFV----CDEWLY 151
           ++L  EF+     D W Y
Sbjct: 178 TQLGNEFIFSDSADLWPY 190

[Close]

BLAST of Sed0024838.1 vs. ExPASy Swiss-Prot
Match: Q9LU18 (Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana OX=3702 GN=ERF036 PE=2 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 2.6e-21
Identity = 69/131 (52.67%), Postives = 89/131 (67.94%), Query Frame = 0


Query: 27  SRIWLGTFATPEMAARAHDVASLSIKGNSAILNFPELASSFPRPASSSPRDIQSAATLAA 86
           +RIWLGTF T +MAARAHDVA+L+IKG+SA+LNFPELAS FPRPASSSP DIQ+AA  AA
Sbjct: 83  TRIWLGTFVTADMAARAHDVAALTIKGSSAVLNFPELASLFPRPASSSPHDIQTAAAEAA 142

Query: 87  SMVPPPPPPQPPLSPPSPLFSWSSEL--DDSTSEELSEIVELPSLGT-SYEES----SEL 146
           +MV      +   +P +P  S SS +  +    E L +IVELP++   SY+ES    ++L
Sbjct: 143 AMVVEEKLLEKDEAPEAPPSSESSYVAAESEDEERLEKIVELPNIEEGSYDESVTSRADL 202

Query: 147 VTEFVCDEWLY 151
                 D W+Y
Sbjct: 203 AYSEPFDCWVY 213

[Close]

BLAST of Sed0024838.1 vs. ExPASy Swiss-Prot
Match: Q9M080 (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana OX=3702 GN=ERF043 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.1e-19
Identity = 73/166 (43.98%), Postives = 94/166 (56.63%), Query Frame = 0


Query: 27  SRIWLGTFATPEMAARAHDVASLSIKGNSAILNFPELASSFPRPASSSPRDIQSAATLAA 86
           SRIWLGTF T EMA RAHDVA++SIKG SAILNFPEL+   PRP S SPRD+++AAT AA
Sbjct: 41  SRIWLGTFPTAEMAMRAHDVAAMSIKGTSAILNFPELSKLLPRPVSLSPRDVRAAATKAA 100

Query: 87  SM---------------------VPPPPPPQPPLSPPSPLFSWSSELDDST-SEELSEIV 146
            M                     +         +S  S  +S  + +++ST S++L EIV
Sbjct: 101 LMDFDTTAFRSDTETSETTTSNKMSESSESNETVSFSSSSWSSVTSIEESTVSDDLDEIV 160

Query: 147 ELPSLGTSYEESSELVTEFVCDEWLYSYGPWYQNQSTREEEEVYEY 171
           +LPSLGTS  ES+E V     ++ +Y    W        EEEV+ Y
Sbjct: 161 KLPSLGTSLNESNEFVIFDSLEDLVY-MPRWLSG----TEEEVFTY 201

[Close]

BLAST of Sed0024838.1 vs. ExPASy TrEMBL
Match: A0A6J1HQA9 (ethylene-responsive transcription factor ERF037-like OS=Cucurbita maxima OX=3661 GN=LOC111465646 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 9.1e-62
Identity = 138/178 (77.53%), Postives = 145/178 (81.46%), Query Frame = 0


Query: 27  SRIWLGTFATPEMAARAHDVASLSIKGNSAILNFPELASSFPRPASSSPRDIQSAATLAA 86
           SRIWLGTFATPEMAARAHDVA+L+IKGNSAILNFPELA+SFPRP SSSPRD+Q AA LAA
Sbjct: 77  SRIWLGTFATPEMAARAHDVAALTIKGNSAILNFPELAASFPRPVSSSPRDVQFAAGLAA 136

Query: 87  SMVPP---PPPPQPPLSP----PSPLFSWSSELDDSTSEELSEIVELPSLGTSYEESSEL 146
           SM  P   PPPP PPLSP    PSP  S SSELD+ST EELSEIV+LPSLGTSYEES   
Sbjct: 137 SMQLPNVDPPPPPPPLSPSSQSPSPPLSSSSELDESTPEELSEIVKLPSLGTSYEESG-- 196

Query: 147 VTEFVCDEWLYSYGPWYQNQSTR--EEEEVYEYLRDQMAMVETECVNPAAFQSLPFSW 196
             EFVCDEW Y  GPWYQNQS R  EEEE YEY RDQMAM ETECV PA+FQ LPFSW
Sbjct: 197 --EFVCDEWQYICGPWYQNQSRREEEEEEAYEYFRDQMAMAETECVIPASFQPLPFSW 250

[Close]

BLAST of Sed0024838.1 vs. ExPASy TrEMBL
Match: A0A6J1FG56 (dehydration-responsive element-binding protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111443880 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 2.2e-60
Identity = 153/253 (60.47%), Postives = 162/253 (64.03%), Query Frame = 0


Query: 1   MANAAAPQADSGAANSSSSSYS-----------LNQG----------------------- 60
           MANA  P+ D G  NSS SS S           L +G                       
Sbjct: 1   MANATVPETDLGGVNSSPSSSSSSSRPKQGGTQLKRGRENSSSSSNDNNRHPIYRGVRMR 60

Query: 61  ---------------SRIWLGTFATPEMAARAHDVASLSIKGNSAILNFPELASSFPRPA 120
                          SRIWLGTFATPEMAARAHDVA+L+IKGNSAILNFPELA+SFPRP 
Sbjct: 61  VWGKWVSEIREPKKKSRIWLGTFATPEMAARAHDVAALTIKGNSAILNFPELAASFPRPV 120

Query: 121 SSSPRDIQSAATLAASMVPP---PPPPQPPLSP----PSPLFSWSSELDDSTSEELSEIV 180
           SSSPRD+Q AA LAASM  P   PPPP PPLSP    PSP  S SSELD+ST EELSEIV
Sbjct: 121 SSSPRDVQFAAGLAASMQLPNVDPPPPPPPLSPSSQSPSPPLSSSSELDESTPEELSEIV 180

Query: 181 ELPSLGTSYEESSELVTEFVCDEWLYSYGPWYQNQSTR--EEEEVYEYLRDQMAMVETEC 196
           +LPSLGTSYEES     EFVCDEW YS GPWYQNQS R  EEEE YEY RDQM M ETEC
Sbjct: 181 KLPSLGTSYEESG----EFVCDEWQYSCGPWYQNQSRREEEEEEAYEYFRDQMVMAETEC 240

[Close]

BLAST of Sed0024838.1 vs. ExPASy TrEMBL
Match: A0A5D3CFH4 (Dehydration-responsive element-binding protein 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00480 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 3.0e-57
Identity = 148/255 (58.04%), Postives = 158/255 (61.96%), Query Frame = 0


Query: 1   MANAAAPQADSGAANSSSSSYSLNQG---------------------------------- 60
           MANA  P  DSG ANSSSSS S   G                                  
Sbjct: 1   MANATVPDTDSGGANSSSSSSSSTSGSISSPSKQAIGDRRPKRGRESSNNSAHPSYRGVR 60

Query: 61  -----------------SRIWLGTFATPEMAARAHDVASLSIKGNSAILNFPELASSFPR 120
                            SRIWLGTFATP+MAARAHDVA+L+IKGNSAILNFPELA+SFPR
Sbjct: 61  MRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASFPR 120

Query: 121 PASSSPRDIQSAATLAASM-------VPPPPPPQPPLSPPSPLFSWSSELDDSTSEELSE 180
           PASSSPRD+QSAA LAASM        PPPPPP PP SPP    S SSELD ST EELSE
Sbjct: 121 PASSSPRDVQSAAALAASMQLPDVMISPPPPPPSPPSSPPC---SSSSELDQSTPEELSE 180

Query: 181 IVELPSLGTSYEESSELVTEFVCDEWLYSYGPWYQ-NQSTREEEEVYEYLRDQMAMVETE 196
           IV LPSLGT Y+ES+E VTEFV DEW YSYGPW Q  +S++EEEE YEY  DQ AM E E
Sbjct: 181 IVVLPSLGTGYDESAESVTEFVFDEWQYSYGPWDQEKESSKEEEEGYEYFIDQTAMAERE 240

[Close]

BLAST of Sed0024838.1 vs. ExPASy TrEMBL
Match: A0A1S3C7X6 (dehydration-responsive element-binding protein 3-like OS=Cucumis melo OX=3656 GN=LOC103497991 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 3.0e-57
Identity = 148/255 (58.04%), Postives = 158/255 (61.96%), Query Frame = 0


Query: 1   MANAAAPQADSGAANSSSSSYSLNQG---------------------------------- 60
           MANA  P  DSG ANSSSSS S   G                                  
Sbjct: 1   MANATVPDTDSGGANSSSSSSSSTSGSISSPSKQAIGDRRPKRGRESSNNSAHPSYRGVR 60

Query: 61  -----------------SRIWLGTFATPEMAARAHDVASLSIKGNSAILNFPELASSFPR 120
                            SRIWLGTFATP+MAARAHDVA+L+IKGNSAILNFPELA+SFPR
Sbjct: 61  MRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASFPR 120

Query: 121 PASSSPRDIQSAATLAASM-------VPPPPPPQPPLSPPSPLFSWSSELDDSTSEELSE 180
           PASSSPRD+QSAA LAASM        PPPPPP PP SPP    S SSELD ST EELSE
Sbjct: 121 PASSSPRDVQSAAALAASMQLPDVMISPPPPPPSPPSSPPC---SSSSELDQSTPEELSE 180

Query: 181 IVELPSLGTSYEESSELVTEFVCDEWLYSYGPWYQ-NQSTREEEEVYEYLRDQMAMVETE 196
           IV LPSLGT Y+ES+E VTEFV DEW YSYGPW Q  +S++EEEE YEY  DQ AM E E
Sbjct: 181 IVVLPSLGTGYDESAESVTEFVFDEWQYSYGPWDQEKESSKEEEEGYEYFIDQTAMAERE 240

[Close]

BLAST of Sed0024838.1 vs. ExPASy TrEMBL
Match: A0A6J1KHB4 (ethylene-responsive transcription factor ERF039-like OS=Cucurbita maxima OX=3661 GN=LOC111493859 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.8e-55
Identity = 128/174 (73.56%), Postives = 141/174 (81.03%), Query Frame = 0


Query: 27  SRIWLGTFATPEMAARAHDVASLSIKGNSAILNFPELASSFPRPASSSPRDIQSAATLAA 86
           SRIWLGTFATP+MAARAHDVA+L+IKGNSAILNFPELA+S PRPASSSPRD+QSAA LAA
Sbjct: 80  SRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASLPRPASSSPRDVQSAAALAA 139

Query: 87  SM----VPPPPPPQPPLSPPSPLFSWSSELDDSTSEELSEIVELPSLGTSYEESSELVTE 146
           SM     PPPPPP PP  P SP F+ SSEL++ST EELSEIV LPSLGTSYEESSE VTE
Sbjct: 140 SMQLPNAPPPPPPLPP--PSSPPFTSSSELEESTPEELSEIVVLPSLGTSYEESSESVTE 199

Query: 147 FVCDEWLYSYGPWYQNQSTR-EEEEVYEYLRDQMAMVETECVNPAAFQSLPFSW 196
            V DEW YSYG W QNQS++ EEEE YE+  DQMAM E       +FQ+LPFSW
Sbjct: 200 LVFDEWQYSYGLWDQNQSSKEEEEEAYEFFIDQMAMAE------KSFQALPFSW 245

[Close]

BLAST of Sed0024838.1 vs. TAIR 10
Match: AT1G77200.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 122.1 bits (305), Expect = 5.0e-28
Identity = 83/153 (54.25%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 27  SRIWLGTFATPEMAARAHDVASLSIKGNSAILNFPELASSFPRPASSSPRDIQSAATLAA 86
           SRIWLGTF+TPEMAARAHD A+L+IKG SA+LNFPELA+  PRPASSSPRD+Q+AA +AA
Sbjct: 65  SRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFPELATYLPRPASSSPRDVQAAAAVAA 124

Query: 87  SMVPPPPPPQPPLSPP--------------------SPLFSWSSELDDSTSEELSEIVEL 146
           +M   P      +S P                    S   S SSE   ST+EELSEIVEL
Sbjct: 125 AMDFSPSSSSLVVSDPTTVIAPAETQLSSSSYSTCTSSSLSPSSEEAASTAEELSEIVEL 184

Query: 147 PSLGTSYEESSELVTEFVCDEWLY-SYGPWYQN 159
           PSL TSY+ES   ++EFV  +  Y    PWY N
Sbjct: 185 PSLETSYDES---LSEFVYVDSAYPPSSPWYIN 214

[Close]

BLAST of Sed0024838.1 vs. TAIR 10
Match: AT5G11590.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 117.9 bits (294), Expect = 9.4e-27
Identity = 85/145 (58.62%), Postives = 94/145 (64.83%), Query Frame = 0


Query: 27  SRIWLGTFATPEMAARAHDVASLSIKGNSAILNFPELASSFPRPASSSPRDIQSAATLAA 86
           SRIWLGTF TPEMAARAHDVA+LSIKG +AILNFPELA SFPRP S SPRDIQ+AA  AA
Sbjct: 73  SRIWLGTFPTPEMAARAHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAA 132

Query: 87  SMVPPPPPPQPPLSPPSPLFSWSS--------ELDDSTSEELSEIVELPSLGTSYE-ESS 146
            M  P        S  S L S SS        +L  + SEEL EIVELPSLG SY+ +S+
Sbjct: 133 HM-EPTTSFSSSTSSSSSLSSTSSLESLVLVMDLSRTESEELGEIVELPSLGASYDVDSA 192

Query: 147 ELVTEFV----CDEWLYSYGPWYQN 159
            L  EFV     D  LY   PW Q+
Sbjct: 193 NLGNEFVFYDSVDYCLYP-PPWGQS 215

[Close]

BLAST of Sed0024838.1 vs. TAIR 10
Match: AT5G25810.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-25
Identity = 77/138 (55.80%), Postives = 87/138 (63.04%), Query Frame = 0


Query: 27  SRIWLGTFATPEMAARAHDVASLSIKGNSAILNFPELASSFPRPASSSPRDIQSAATLAA 86
           SRIWLGTF +PEMAARAHDVA+LSIKG SAILNFP+LA SFPRP+S SPRDIQ AA  AA
Sbjct: 58  SRIWLGTFPSPEMAARAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAA 117

Query: 87  SMVPPPPPPQPPLSPPSPLFSWSSELDDST----------SEELSEIVELPSLGTSYEES 146
            M           S  S L   SS+   S           SEEL EIVELPSLG+SY+  
Sbjct: 118 HM-----ETSQSFSSSSSLTFSSSQSSSSLESLVSSSATGSEELGEIVELPSLGSSYDGL 177

Query: 147 SELVTEFV----CDEWLY 151
           ++L  EF+     D W Y
Sbjct: 178 TQLGNEFIFSDSADLWPY 190

[Close]

BLAST of Sed0024838.1 vs. TAIR 10
Match: AT3G16280.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-22
Identity = 69/131 (52.67%), Postives = 89/131 (67.94%), Query Frame = 0


Query: 27  SRIWLGTFATPEMAARAHDVASLSIKGNSAILNFPELASSFPRPASSSPRDIQSAATLAA 86
           +RIWLGTF T +MAARAHDVA+L+IKG+SA+LNFPELAS FPRPASSSP DIQ+AA  AA
Sbjct: 83  TRIWLGTFVTADMAARAHDVAALTIKGSSAVLNFPELASLFPRPASSSPHDIQTAAAEAA 142

Query: 87  SMVPPPPPPQPPLSPPSPLFSWSSEL--DDSTSEELSEIVELPSLGT-SYEES----SEL 146
           +MV      +   +P +P  S SS +  +    E L +IVELP++   SY+ES    ++L
Sbjct: 143 AMVVEEKLLEKDEAPEAPPSSESSYVAAESEDEERLEKIVELPNIEEGSYDESVTSRADL 202

Query: 147 VTEFVCDEWLY 151
                 D W+Y
Sbjct: 203 AYSEPFDCWVY 213

[Close]

BLAST of Sed0024838.1 vs. TAIR 10
Match: AT4G32800.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 96.3 bits (238), Expect = 2.9e-20
Identity = 73/166 (43.98%), Postives = 94/166 (56.63%), Query Frame = 0


Query: 27  SRIWLGTFATPEMAARAHDVASLSIKGNSAILNFPELASSFPRPASSSPRDIQSAATLAA 86
           SRIWLGTF T EMA RAHDVA++SIKG SAILNFPEL+   PRP S SPRD+++AAT AA
Sbjct: 41  SRIWLGTFPTAEMAMRAHDVAAMSIKGTSAILNFPELSKLLPRPVSLSPRDVRAAATKAA 100

Query: 87  SM---------------------VPPPPPPQPPLSPPSPLFSWSSELDDST-SEELSEIV 146
            M                     +         +S  S  +S  + +++ST S++L EIV
Sbjct: 101 LMDFDTTAFRSDTETSETTTSNKMSESSESNETVSFSSSSWSSVTSIEESTVSDDLDEIV 160

Query: 147 ELPSLGTSYEESSELVTEFVCDEWLYSYGPWYQNQSTREEEEVYEY 171
           +LPSLGTS  ES+E V     ++ +Y    W        EEEV+ Y
Sbjct: 161 KLPSLGTSLNESNEFVIFDSLEDLVY-MPRWLSG----TEEEVFTY 201

The following BLAST results are available for this feature:

BLAST of Sed0024838.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021299.1	1.1e-61	77.53	Dehydration-responsive element-binding protein 3, partial [Cucurbita argyrosperm...	[more]
XP_022965898.1	1.9e-61	77.53	ethylene-responsive transcription factor ERF037-like [Cucurbita maxima]	[more]
XP_023536664.1	4.2e-61	77.53	ethylene-responsive transcription factor ERF039-like [Cucurbita pepo subsp. pepo...	[more]
KAG6586444.1	1.6e-60	60.87	Dehydration-responsive element-binding protein 3, partial [Cucurbita argyrosperm...	[more]
XP_022937478.1	4.6e-60	60.47	dehydration-responsive element-binding protein 3-like [Cucurbita moschata]	[more]

BLAST of Sed0024838.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80654	7.0e-27	54.25	Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LYD3	1.3e-25	58.62	Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702...	[more]
Q39127	1.5e-24	55.80	Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9LU18	2.6e-21	52.67	Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9M080	4.1e-19	43.98	Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Sed0024838.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HQA9	9.1e-62	77.53	ethylene-responsive transcription factor ERF037-like OS=Cucurbita maxima OX=3661...	[more]
A0A6J1FG56	2.2e-60	60.47	dehydration-responsive element-binding protein 3-like OS=Cucurbita moschata OX=3...	[more]
A0A5D3CFH4	3.0e-57	58.04	Dehydration-responsive element-binding protein 3-like OS=Cucumis melo var. makuw...	[more]
A0A1S3C7X6	3.0e-57	58.04	dehydration-responsive element-binding protein 3-like OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1KHB4	2.8e-55	73.56	ethylene-responsive transcription factor ERF039-like OS=Cucurbita maxima OX=3661...	[more]

BLAST of Sed0024838.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G77200.1	5.0e-28	54.25	Integrase-type DNA-binding superfamily protein	[more]
AT5G11590.1	9.4e-27	58.62	Integrase-type DNA-binding superfamily protein	[more]
AT5G25810.1	1.0e-25	55.80	Integrase-type DNA-binding superfamily protein	[more]
AT3G16280.1	1.8e-22	52.67	Integrase-type DNA-binding superfamily protein	[more]
AT4G32800.1	2.9e-20	43.98	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 18..67 e-value: 2.4E-7 score: 40.4
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 25..53 e-value: 6.6E-5 score: 23.1
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 1..61 score: 13.471845
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 25..63 e-value: 7.01051E-16 score: 66.9115
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 11..62 e-value: 2.8E-12 score: 48.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR31985	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	coord: 27..179
None	No IPR available	PANTHER	PTHR31985:SF177	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE	coord: 27..179
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 24..62

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0024838	Sed0024838	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0024838.1-exon	Sed0024838.1-exon-LG03:11404912..11404989	exon
Sed0024838.1-exon	Sed0024838.1-exon-LG03:11405131..11405640	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0024838.1-cds	Sed0024838.1-cds-LG03:11404912..11404989	CDS
Sed0024838.1-cds	Sed0024838.1-cds-LG03:11405131..11405640	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0024838.1	Sed0024838.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity