Sed0024516.1 (mRNA) Chayote v1

Overview
NameSed0024516.1
TypemRNA
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG02: 31648304 .. 31649465 (-)
Sequence length1014
RNA-Seq ExpressionSed0024516.1
SyntenySed0024516.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGTCTACAAATTAGTAAAAAAGAAAAAAACGAAAGTTGCGCCGAAACTCTTGAGACTTTTATCGTTAGTTAGGGTTCTCGTCGAAGGTTTATCTCTCGAAGCTCATTGTCAAAGCTCTATCTCTCGCCAAATTGCTCTCAAAGCAACAAGGTTCTCATCAAGATCACTCAAAGGAAAAGATCGAAGCTCTGAGCCCCAAAGTAATATTGATATTTTCAGTCAAAAACACCATAGAAGAGAACAACAACATATAATTTCTGAAAGCTTATGCAACTTATTGGCTGTCATTTCATTTGCAGGGAAGTGTAGTGTTTTTTTAGTTAATTTTCATTTCATTTTGATTCGCAGCCAACTTTTTGCCTTGCACAAAACCCTAAGGCAGATCAAGTTGAGGGAACCAAATGGTCGGATTCTCCAATAATAACCTTACTAGCTTCCAATTTCTTCACCCTCTTCAAAATTTTCAGGTGATTATTTTGTTGCTTGCTGGTTTTTGGTTCAATTTGCGGAACCCAGAATTTTAATTTTAGGGATTTTTCATGGGTGCAATAATTTTGTGCTGTCCTACCTCAGAGGTTTTTATGGTTGTATGATTTGGTTTAGTATGTGTTATGCATTGTGATTGTGCATAGAGGTTAGTGTTGCAACTCTACTGATTCATGTTTAATTAACATGGGCACAAATATTTATAGTGTTTGATGCATATGTATAGCAAATTATGTTGAATTTGTTCACATGGTAACTTTTTTGTTTGTGAATTTCTTTTTATCGGTCAGGGACACGCCTGTTGGGGAATTTTCAAGACAATGAGTTACAGCTGCTGTGCTTTTTTTTTTTTTTTTGGAAATATGGATACTGAAGATTTATTAAGAAGAGAGAAAAAGGAGGAGAGAAAATTTAGTCCGAAGAGATTACATATAGCTTTGCCAATTTGTAACAATGGTGGCAATAGAATAATTCATAAAAAGTTTAGATTTAGAGCTCCACTCTCCAGTATTCAAAGTGATTTTCTTCCAAAACTAATCAGTTGTTTGGTATTTATGCTCCATGTTGAATGTTCTAGCATTTCTTTCCTTCCAAATCCACGAAAGTATAGCTCCTTTGAAGTTTGCAAGAAGCTCCAACCGTTGCGAGTTTACTTTGTAACAAAAAAATCATAA

mRNA sequence

AAAGTCTACAAATTAGTAAAAAAGAAAAAAACGAAAGTTGCGCCGAAACTCTTGAGACTTTTATCGTTAGTTAGGGTTCTCGTCGAAGGTTTATCTCTCGAAGCTCATTGTCAAAGCTCTATCTCTCGCCAAATTGCTCTCAAAGCAACAAGGTTCTCATCAAGATCACTCAAAGGAAAAGATCGAAGCTCTGAGCCCCAAACCAACTTTTTGCCTTGCACAAAACCCTAAGGCAGATCAAGTTGAGGGAACCAAATGGTCGGATTCTCCAATAATAACCTTACTAGCTTCCAATTTCTTCACCCTCTTCAAAATTTTCAGGTGATTATTTTGTTGCTTGCTGGTTTTTGGTTCAATTTGCGGAACCCAGAATTTTAATTTTAGGGATTTTTCATGGGTGCAATAATTTTGTGCTGTCCTACCTCAGAGGTTTTTATGGTTGTATGATTTGGTTTAGTATGTGTTATGCATTGTGATTGTGCATAGAGGTTAGTGTTGCAACTCTACTGATTCATGTTTAATTAACATGGGCACAAATATTTATAGTGTTTGATGCATATGTATAGCAAATTATGTTGAATTTGTTCACATGGTAACTTTTTTGTTTGTGAATTTCTTTTTATCGGTCAGGGACACGCCTGTTGGGGAATTTTCAAGACAATGAGTTACAGCTGCTGTGCTTTTTTTTTTTTTTTTGGAAATATGGATACTGAAGATTTATTAAGAAGAGAGAAAAAGGAGGAGAGAAAATTTAGTCCGAAGAGATTACATATAGCTTTGCCAATTTGTAACAATGGTGGCAATAGAATAATTCATAAAAAGTTTAGATTTAGAGCTCCACTCTCCAGTATTCAAAGTGATTTTCTTCCAAAACTAATCAGTTGTTTGGTATTTATGCTCCATGTTGAATGTTCTAGCATTTCTTTCCTTCCAAATCCACGAAAGTATAGCTCCTTTGAAGTTTGCAAGAAGCTCCAACCGTTGCGAGTTTACTTTGTAACAAAAAAATCATAA

Coding sequence (CDS)

ATGAGTTACAGCTGCTGTGCTTTTTTTTTTTTTTTTGGAAATATGGATACTGAAGATTTATTAAGAAGAGAGAAAAAGGAGGAGAGAAAATTTAGTCCGAAGAGATTACATATAGCTTTGCCAATTTGTAACAATGGTGGCAATAGAATAATTCATAAAAAGTTTAGATTTAGAGCTCCACTCTCCAGTATTCAAAGTGATTTTCTTCCAAAACTAATCAGTTGTTTGGTATTTATGCTCCATGTTGAATGTTCTAGCATTTCTTTCCTTCCAAATCCACGAAAGTATAGCTCCTTTGAAGTTTGCAAGAAGCTCCAACCGTTGCGAGTTTACTTTGTAACAAAAAAATCATAA

Protein sequence

MSYSCCAFFFFFGNMDTEDLLRREKKEERKFSPKRLHIALPICNNGGNRIIHKKFRFRAPLSSIQSDFLPKLISCLVFMLHVECSSISFLPNPRKYSSFEVCKKLQPLRVYFVTKKS
Homology
The following BLAST results are available for this feature:
BLAST of Sed0024516.1 vs.
Match NameE-valueIdentityDescription
BLAST of Sed0024516.1 vs.
Match NameE-valueIdentityDescription
BLAST of Sed0024516.1 vs.
Match NameE-valueIdentityDescription
BLAST of Sed0024516.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Sed0024516Sed0024516gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0024516.1-exonSed0024516.1-exon-LG02:31648304..31649115exon
Sed0024516.1-exonSed0024516.1-exon-LG02:31649264..31649465exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0024516.1-cdsSed0024516.1-cds-LG02:31648304..31648657CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0024516.1-five_prime_utrSed0024516.1-five_prime_utr-LG02:31648658..31649115five_prime_UTR
Sed0024516.1-five_prime_utrSed0024516.1-five_prime_utr-LG02:31649264..31649465five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Sed0024516.1Sed0024516.1-proteinpolypeptide