Sed0024296.1 (mRNA) Chayote v1

Overview


Name	Sed0024296.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	BUD13 homolog
Location	LG12: 4078199 .. 4082296 (-)
Sequence length	1922
RNA-Seq Expression	Sed0024296.1
Synteny	Sed0024296.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCATAACTATTAGGTTGAGCTTCTTCGTCGCGGCGTTTCCTTCATCGTCTGATCACCGCTCAGCGCCGTCGCCGTCGCCGTCGCCAATCTCCCGTTCACTGCTCCGGAAGCCGTTATTTGTGTCCCGCCGCCTTGTTTCTTCCATTGTTGCCGCCTCCGTTGCACTGATTGTTTCCTCCATTGTTGTTGCAGGTTGTAGCTCGAGAGACTGAACGATGTGTGCGAAATCAACGTCCCTCAAGGAATACATTAAGCGCTACGAAAGCAACACTAATCCAGAGCATTTGGATTATTGTGCACAAGAAGAAGAAGAAGATATTGATCTATCACCTCCGCGACGGCGAAGGAAACGGTATCATACTCCCTCGCCTGAACCTGTTGTAAAAATTTCGCAATCTAATATGGTTTATATACGAAATCGTGTTGTTATTCATAAAGAATCGCCACCAGATGTAGTTTCTCCACAAATTAGGAAAACCCTAAAAGTGCCGAGAGCTCATGAAGAGGCCGAATGGATTAGGTTTAGAGAGATGATTAATCCTTCATCAAGTAGTAACAAGATTAAAGGGGATCGTGTTTCTAAAGAGGAATTGACCTTAGAAGGACGATCATGGAAGAAGAATAAGATAGAAGAAAAGGCCAAGGAGATCATAAAGTTGGAATGGGGCAATGGCTTAGCTCAAAAGCGAGAAGCAGAAGCCGAGCTTATGGAATTTGAACTCGAGAAGGATAGACCATTTGCACGGACAAGGAATGATGCAGAGCTTGATTCAATGATGAGAGAGAGGCCGAGATGGGGTGATCCTTTGGCACATTTGGTCAAGAAAAGACAATCCCTAATGGTTCTTCCTGATTCAGGAGACTGCGAGAAAATGAAGGAATCAGGGTTCATTGTTCCTCAGGACATTCCACCTCATAGCTGGCTGAAAACAGGATTCGATGCTGCCGTGCCTAATCGATATGGTATAAAACCAGGAAGACATTGGGATGGAGTTGATCGTAGTAATGGGTTTGAGAACCTAATGTTCAAAAGGATGAACCAGAAAGGAGCTACGGAAAAGGAAGCATATCTTTGGTCTGTGTCTGATATGTAACATCAAAGGTTATAGTGGAGTGAAGCTCTGAGTTTCTTGTTTTAAAAAAAAAACATCAAAAGGTAAAGTTAACAGTTGAATCTTCAGTACTACAAAAGCAGTTGAATGTTTATGGGCATTTTGTGGAACATTTTTGGAGAATAAATGTGAACGATTTTTTTGCCTCATTATGGTTTATGGGGGTTTCTTTTTTTGGGCTCTAAATCAAAGCTTTTACTGTATTTTCTTTAATTTGGGATTTGTAAAGTGTTTTGCTTTTTTTTTTTTTTACTATTCCATGTTGGTTTCTCATGTGAACTTACCTTTACTTTTACTATTTGTTGGCCACATGTGTGTGTATGTTGTTGATTGACTTGGATATTCAACCTGTAGTTTTCTTCAACAATGAAATGATGAGGTAGGGAGGTTGAAATCATACGGTGATGGACAGCCAACACTTCCTGAGGAACAAGGTACAAAAAAAATCCCTTTACCTTATAATAATTCTTCCCGAGGAGATTGTTTGCTGTTTTTTACACTAATATTGTGTGAAAAATGTTTGGTTTTTTTCTTCCATTATTTTTATTATTTGTTCTTGAAGAGTGATGGGGTGAAATGAAATCATACAAGAATTGCAAGAAGGCAGAATTGGTGATGGTGGTTTGATTTTTTTTTTCTCTTCCTTTTATTAACCATTTTTTTACTACTAAACTAACAAGTTAGAATTATAGAGTATGCCAATGCCAGGTGAAATTTTGCGAAATAATAATAAATATCATTATAATTATCTTTGCTGCCCTAGTTTTTTTTTTTTTTTTTTTAAAAAATTAATTAATTTTTTTTATTGATGTCCTTAATCAGTTTTTTTATGTTAAGAAGCTTTGAAAAGTTTTTTAGTTCAATTGGTTTGTATGTTCATGGTTGATTGGTAAGCTTTAGTTGTTTATCTCCATTATTTTTTTTTTCTCAATTTAGAATTGATGTTTTTTTGTTAACTTGGTCACGAACATTGTCGAGTAGTTGTAGTATTCTCAAACCAATTATTTTGCTCTCAACCAAGTAAGTCTAGTTTTTTGTGCGAATCCAAGATAGTCAGATTAGGATTTGTGTGCTGGATAAGTCTATAATTTTAAACGAGCCGAATAGCAAGTTTAGAAGTGAATCATCATGAGTTGACCTAGTGGTCAAAAGAATTTTGGACGCCAAAAAGTTAGGTGCAATCCATGATGACTACACTCTTAGAAATTTATTTCTTATAGATTTCCTTGACAGAAAAATATTGTAGTATCAAATGGTTTGACCCGTGAGAATACACGTTTAGAAGTGTTGTTTAGTACGTATTTCATGATATGTTTAGTTGTTGTGTTGAATTCTTACTTGAATATGATAAGAACCAAGATCTTGGTTTTTTTAGTTCAACAATGAGTGGGGATCAAACCCATGACCTTTTGGTTCATAGGTATACATAGATATCATCGAGTTATTGCTATTGTTGACAGAACCAAGATCTATTACCATATGAAAATGATTGAATTATACGATAACCAAATTTAGGATATTTGGACCCTCCTATTCTTGAGATCACTTAAAACCCAATCACTACTACAAATAAGGCTACCATGACACCTATGGTAATGCATTTTGCAAAGAGGGAATGAAAAAACATTTTTGGCAACTTGACATGGGATGGGATAAAACAGGGGTACTCTTTTAACTTTAGAGGAAAACATTTTTGGCAACTTTATAGGACGGGTCAGTGGTGCCCAGGAGGAGCAAAGCTTCAAGTTCCCTTGTTATCCTCCAAAAGAAACAAAGGTACTCTTTTAGCATTGAATCCATTTTAAGGGAGCCCTCTGGTTTTTGAAGCTAGAGGTACAGGCAGTCTCGAAGTAGAGAGTTTTGCAACCATTCTCCTCTTAAAACTCAAGTAGAACATAAGTTTTATTTCGTAATATCCATGACATAGGAGAGGCTAGCATTTTCAATCTCTCTCCCCCTTTCTCTCTCTTGCACATCCTTGTGCTGTAAAAAAATTCTCGATCCCAATTAAATCGTTTTCCTCACACCAGATATGAACTCAAGACAAGATTAAAATCTACCCTATTGATGGCTAGATCATCATTATTTTAATAAATTAGCTCCTGGAGCATTCAACTTCACCTGCTATTATGTTCTATAGGTAAATTATATCAACAGTCGGTTTTTCTGTTTGAACTGCAAGATTAAGTCCTCGCTGGATGACTAAAGGCTTTGGTGGATGATAGCAAGGCCGTTTTTGGGTAATTATAACTGTAGTTTTGGATCTTGTTTATTTCTTGACACTTTTTTTCCACGATTCAGCTTATTATTCTTCATTTGGCAGTTGACGGTTTTTATGAGAGCTTCTTAAGGTTAGTGCAGTTGTTAATGAAATTGAGGTTAGTGCAGTTCTTTTTATTGATTGGGGGATCGATAACTGGTTGATTATACTCTCATTTTTTGATTCCTTTAACACAAAAAAAGAAAAGTAAGAGTTAATATTTCTGCCTTCCTTAGGTTCCGGGCTCAGAGTATAGGCCATGTTACTGTATTATATGGTGATGAATTTTTTCTATTATTATTGGAACCAGATCCTTCATACGTTTGGCTGGAATTTTGTGCGCCCCCGTGACATTCGGACTTTTCTTCTTTGCATTATAGGGGGGCATCCTTTCAAGAATTGTTCAAAAGTTCTCTGGTTGAATATGGTATTTGCTTTTTTCTGGAAATGGTGGGGGGAGAGGAACAATAGGATTTTCAATGATACTCATTTCTCCCTCGAGTCCCTCACCGAAGCATCTATATGCTGGAATTTTTTGGAGTCATAGATTATCTCCATTTTGTAACTGTGTTGTGTTTTATTTGCTCAATGACACCATCTTTTGTAGGTATCGGTTGGCGATTCTCATTGTAATATTCATTGATCGATGAAAGTTTATGTTTTCAATCAAAAAATGAATTTTTTCTATACTACATTTGATATGATAATTCAACGAGATTTCAAGG

mRNA sequence

GTCATAACTATTAGGTTGAGCTTCTTCGTCGCGGCGTTTCCTTCATCGTCTGATCACCGCTCAGCGCCGTCGCCGTCGCCGTCGCCAATCTCCCGTTCACTGCTCCGGAAGCCGTTATTTGTGTCCCGCCGCCTTGTTTCTTCCATTGTTGCCGCCTCCGTTGCACTGATTGTTTCCTCCATTGTTGTTGCAGGTTGTAGCTCGAGAGACTGAACGATGTGTGCGAAATCAACGTCCCTCAAGGAATACATTAAGCGCTACGAAAGCAACACTAATCCAGAGCATTTGGATTATTGTGCACAAGAAGAAGAAGAAGATATTGATCTATCACCTCCGCGACGGCGAAGGAAACGGTATCATACTCCCTCGCCTGAACCTGTTGTAAAAATTTCGCAATCTAATATGGTTTATATACGAAATCGTGTTGTTATTCATAAAGAATCGCCACCAGATGTAGTTTCTCCACAAATTAGGAAAACCCTAAAAGTGCCGAGAGCTCATGAAGAGGCCGAATGGATTAGGTTTAGAGAGATGATTAATCCTTCATCAAGTAGTAACAAGATTAAAGGGGATCGTGTTTCTAAAGAGGAATTGACCTTAGAAGGACGATCATGGAAGAAGAATAAGATAGAAGAAAAGGCCAAGGAGATCATAAAGTTGGAATGGGGCAATGGCTTAGCTCAAAAGCGAGAAGCAGAAGCCGAGCTTATGGAATTTGAACTCGAGAAGGATAGACCATTTGCACGGACAAGGAATGATGCAGAGCTTGATTCAATGATGAGAGAGAGGCCGAGATGGGGTGATCCTTTGGCACATTTGGTCAAGAAAAGACAATCCCTAATGGTTCTTCCTGATTCAGGAGACTGCGAGAAAATGAAGGAATCAGGGTTCATTGTTCCTCAGGACATTCCACCTCATAGCTGGCTGAAAACAGGATTCGATGCTGCCGTGCCTAATCGATATGGTATAAAACCAGGAAGACATTGGGATGGAGTTGATCGTAGTAATGGGTTTGAGAACCTAATGTTCAAAAGGATGAACCAGAAAGGAGCTACGGAAAAGGAAGCATATCTTTGGTCTGTGTCTGATATGTAACATCAAAGGTTATAGTGGAGTGAAGCTCTGAGTTTCTTGTTTTAAAAAAAAAACATCAAAAGTTTTCTTCAACAATGAAATGATGAGGTAGGGAGGTTGAAATCATACGGTGATGGACAGCCAACACTTCCTGAGGAACAAGGACGGGTCAGTGGTGCCCAGGAGGAGCAAAGCTTCAAGTTCCCTTGTTATCCTCCAAAAGAAACAAAGGTAAATTATATCAACAGTCGGTTTTTCTGTTTGAACTGCAAGATTAAGTCCTCGCTGGATGACTAAAGGCTTTGGTGGATGATAGCAAGGCCGTTTTTGGTTGACGGTTTTTATGAGAGCTTCTTAAGGTTCCGGGCTCAGAGTATAGGCCATGTTACTGTATTATATGGTGATGAATTTTTTCTATTATTATTGGAACCAGATCCTTCATACGTTTGGCTGGAATTTTGTGCGCCCCCGTGACATTCGGACTTTTCTTCTTTGCATTATAGGGGGGCATCCTTTCAAGAATTGTTCAAAAGTTCTCTGGTTGAATATGGTATTTGCTTTTTTCTGGAAATGGTGGGGGGAGAGGAACAATAGGATTTTCAATGATACTCATTTCTCCCTCGAGTCCCTCACCGAAGCATCTATATGCTGGAATTTTTTGGAGTCATAGATTATCTCCATTTTGTAACTGTGTTGTGTTTTATTTGCTCAATGACACCATCTTTTGTAGGTATCGGTTGGCGATTCTCATTGTAATATTCATTGATCGATGAAAGTTTATGTTTTCAATCAAAAAATGAATTTTTTCTATACTACATTTGATATGATAATTCAACGAGATTTCAAGG

Coding sequence (CDS)

ATGTGTGCGAAATCAACGTCCCTCAAGGAATACATTAAGCGCTACGAAAGCAACACTAATCCAGAGCATTTGGATTATTGTGCACAAGAAGAAGAAGAAGATATTGATCTATCACCTCCGCGACGGCGAAGGAAACGGTATCATACTCCCTCGCCTGAACCTGTTGTAAAAATTTCGCAATCTAATATGGTTTATATACGAAATCGTGTTGTTATTCATAAAGAATCGCCACCAGATGTAGTTTCTCCACAAATTAGGAAAACCCTAAAAGTGCCGAGAGCTCATGAAGAGGCCGAATGGATTAGGTTTAGAGAGATGATTAATCCTTCATCAAGTAGTAACAAGATTAAAGGGGATCGTGTTTCTAAAGAGGAATTGACCTTAGAAGGACGATCATGGAAGAAGAATAAGATAGAAGAAAAGGCCAAGGAGATCATAAAGTTGGAATGGGGCAATGGCTTAGCTCAAAAGCGAGAAGCAGAAGCCGAGCTTATGGAATTTGAACTCGAGAAGGATAGACCATTTGCACGGACAAGGAATGATGCAGAGCTTGATTCAATGATGAGAGAGAGGCCGAGATGGGGTGATCCTTTGGCACATTTGGTCAAGAAAAGACAATCCCTAATGGTTCTTCCTGATTCAGGAGACTGCGAGAAAATGAAGGAATCAGGGTTCATTGTTCCTCAGGACATTCCACCTCATAGCTGGCTGAAAACAGGATTCGATGCTGCCGTGCCTAATCGATATGGTATAAAACCAGGAAGACATTGGGATGGAGTTGATCGTAGTAATGGGTTTGAGAACCTAATGTTCAAAAGGATGAACCAGAAAGGAGCTACGGAAAAGGAAGCATATCTTTGGTCTGTGTCTGATATGTAA

Protein sequence

MCAKSTSLKEYIKRYESNTNPEHLDYCAQEEEEDIDLSPPRRRRKRYHTPSPEPVVKISQSNMVYIRNRVVIHKESPPDVVSPQIRKTLKVPRAHEEAEWIRFREMINPSSSSNKIKGDRVSKEELTLEGRSWKKNKIEEKAKEIIKLEWGNGLAQKREAEAELMEFELEKDRPFARTRNDAELDSMMRERPRWGDPLAHLVKKRQSLMVLPDSGDCEKMKESGFIVPQDIPPHSWLKTGFDAAVPNRYGIKPGRHWDGVDRSNGFENLMFKRMNQKGATEKEAYLWSVSDM

Homology

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BLAST of Sed0024296.1 vs. NCBI nr
Match: XP_023005354.1 (BUD13 homolog [Cucurbita maxima] >XP_023005355.1 BUD13 homolog [Cucurbita maxima])

HSP 1 Score: 310.8 bits (795), Expect = 1.2e-80
Identity = 198/374 (52.94%), Postives = 220/374 (58.82%), Query Frame = 0


Query: 23  HLDYCAQEEEEDIDLSPPRRRRKRYHTPSPEPVVK--------------------ISQSN 82
           HLD+     +EDIDLSPPR+RRKRYHTPSPEP  K                     S+SN
Sbjct: 201 HLDHA----QEDIDLSPPRQRRKRYHTPSPEPDGKPTQTFSPQSDMSPPRRVDRQASKSN 260

Query: 83  M-------------------------VYI---------RNRVV----------------- 142
           +                          Y+         RN  V                 
Sbjct: 261 LGVNHKAAGLSDLSPPRRRTSNYAEDAYVSRGSYLSPPRNHRVDVRGDRLLTKNNSQNHV 320

Query: 143 --IHKESPPDVVSPQIRKTLKVPRAH------------------------EEAEWIRFRE 202
               +ESPPD +SPQ RK  KVP                            + +W RF+E
Sbjct: 321 TDASQESPPD-LSPQ-RKQQKVPPVSVSFKQPRKTGLLTQQEFGEEVSKTNKEDWTRFKE 380

Query: 203 MINPSSSSN-------KIKGDRVSKEELTLEGRSWKKNKIEEKAKEIIKLEWGNGLAQKR 262
           M NPS+SSN       KIKGDR+SKEE         + KIEEK KE IKLEWG GLAQKR
Sbjct: 381 M-NPSASSNAEPIYRDKIKGDRISKEEFLK-----SRGKIEEKPKE-IKLEWGKGLAQKR 440

Query: 263 EAEAELMEFELEKDRPFARTRNDAELDSMMRERPRWGDPLAHLVKKRQSLMVLPDSGDCE 293
           EAEAE ME ELEKDRPFAR+RNDAELDSM+RER RWGDP+AHLVKKRQS M LPD GD E
Sbjct: 441 EAEAEQMELELEKDRPFARSRNDAELDSMLRERLRWGDPMAHLVKKRQSEMALPDLGDSE 500

[Close]

BLAST of Sed0024296.1 vs. NCBI nr
Match: XP_011650042.1 (BUD13 homolog [Cucumis sativus] >XP_031737093.1 BUD13 homolog [Cucumis sativus] >XP_031737094.1 BUD13 homolog [Cucumis sativus] >XP_031737095.1 BUD13 homolog [Cucumis sativus] >KGN63326.1 hypothetical protein Csa_021811 [Cucumis sativus])

HSP 1 Score: 309.7 bits (792), Expect = 2.7e-80
Identity = 193/382 (50.52%), Postives = 223/382 (58.38%), Query Frame = 0


Query: 9   KEYIKRYESNTNPEHLDYCAQEEEEDIDLSPPRRRRKRYHTPSPEPVV------------ 68
           K Y   +    N  H+DY     +EDIDLSPPR+RRKRYHTPSPEP              
Sbjct: 187 KVYRDAHLQGANSWHIDYA----QEDIDLSPPRQRRKRYHTPSPEPDATCTRSVSPQFDI 246

Query: 69  --------KISQSNM----------------VYI-------------------------- 128
                   K S++++                 Y+                          
Sbjct: 247 SPPRRSDRKASKTSLGGNHKVDLSPPRRRASDYVGDERISRGSDLSPPRKQRKDVRGDRS 306

Query: 129 ------RNRVVIHKESPPDVVSPQIRKTLKVP-----------------------RAHEE 188
                 RN V    +  P  +SP  +K  ++P                           +
Sbjct: 307 LLDKQSRNHVTDASQESPTDLSPPRKKQKELPVSVSFKQTRKTGLLTQQEFGEEMSKTNK 366

Query: 189 AEWIRFREMINPSSSSN-------KIKGDRVSKEELTLEGRSWKKNKIEEKAKEIIKLEW 248
            +W RF+EM NPS+SSN       KIKGDR+SKEE  L+ R     KIEEKAKE IKLEW
Sbjct: 367 EDWTRFKEM-NPSASSNADPVYRDKIKGDRISKEEF-LKAR----GKIEEKAKE-IKLEW 426

Query: 249 GNGLAQKREAEAELMEFELEKDRPFARTRNDAELDSMMRERPRWGDPLAHLVKKRQSLMV 293
           G GLAQKREAEAELME ELEKDRPFAR+RNDAELD+M+R+R RWGDP+AHLVKKRQS M 
Sbjct: 427 GKGLAQKREAEAELMELELEKDRPFARSRNDAELDTMLRDRLRWGDPMAHLVKKRQSEMA 486

[Close]

BLAST of Sed0024296.1 vs. NCBI nr
Match: KAG6596913.1 (BUD13-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030189.1 BUD13-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 307.0 bits (785), Expect = 1.8e-79
Identity = 197/375 (52.53%), Postives = 220/375 (58.67%), Query Frame = 0


Query: 23  HLDYCAQEEEEDIDLSPPRRRRKRYHTPSPEPVVKIS-----QSNM-------------- 82
           HLD      +EDIDLSPPR+RRKRYHTPSPEP  K +     QS+M              
Sbjct: 201 HLD----RAQEDIDLSPPRQRRKRYHTPSPEPDGKPTQPFSPQSDMSPPRRVDRQASKSS 260

Query: 83  --------------------------VYI---------------------------RNRV 142
                                      Y+                           +N V
Sbjct: 261 LGVNHKAAGLSDLSPPRRRTSNYAEDAYVSRGSDLSPPRKQRIDVRGDRLLTENNSQNHV 320

Query: 143 V--IHKESPPDVVSPQIRKTLKVPRAH------------------------EEAEWIRFR 202
           V    +ESPPD +SPQ RK  KVP                            + +W RF+
Sbjct: 321 VTDASQESPPD-LSPQ-RKKQKVPPVSVSFKQPRKTGLLTQQEFGEEMSKTNKEDWTRFK 380

Query: 203 EMINPSSSSN-------KIKGDRVSKEELTLEGRSWKKNKIEEKAKEIIKLEWGNGLAQK 262
           EM NPS+SSN       KIKGDR+SKEE         + KIEEK KE IKLEWG GLAQK
Sbjct: 381 EM-NPSASSNAEPIYRDKIKGDRISKEEFLK-----SRGKIEEKPKE-IKLEWGKGLAQK 440

Query: 263 REAEAELMEFELEKDRPFARTRNDAELDSMMRERPRWGDPLAHLVKKRQSLMVLPDSGDC 293
           REAEAE ME ELEKDRPFAR+RNDAELDSM+RER RWGDP+AHLVKK+QS M LPD GD 
Sbjct: 441 REAEAEQMELELEKDRPFARSRNDAELDSMLRERLRWGDPMAHLVKKKQSEMALPDLGDS 500

[Close]

BLAST of Sed0024296.1 vs. NCBI nr
Match: XP_008462822.1 (PREDICTED: BUD13 homolog [Cucumis melo] >XP_008462824.1 PREDICTED: BUD13 homolog [Cucumis melo] >KAA0066385.1 BUD13-like protein [Cucumis melo var. makuwa] >TYK00899.1 BUD13-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 306.6 bits (784), Expect = 2.3e-79
Identity = 195/382 (51.05%), Postives = 217/382 (56.81%), Query Frame = 0


Query: 9   KEYIKRYESNTNPEHLDYCAQEEEEDIDLSPPRRRRKRYHTPSPEP-------------- 68
           K Y   +    N  H+D CAQ   EDIDLSPPR+RRKRYHTPSPEP              
Sbjct: 188 KVYRDAHLQGANWGHMD-CAQ---EDIDLSPPRQRRKRYHTPSPEPEATRTRSVSPQSDM 247

Query: 69  ------------------------------------------------------------ 128
                                                                       
Sbjct: 248 SPPRRSDRKASKASLGGNHKVDLSPPRRRASDYVGDEHISRGSDLSPPRKQRKDVRGDRS 307

Query: 129 ---------VVKISQSNMVYIRNRVVIHKESPPDVVSPQIRKTLKVPRAH--------EE 188
                    V   SQ +   +       KE P  V   Q RKT  + +           +
Sbjct: 308 LLDKHSQNHVTDASQESRTDLSPHRKKQKELPVSVSFKQTRKTGLLTQQEFGEEMSKTNK 367

Query: 189 AEWIRFREMINPSSSSN-------KIKGDRVSKEELTLEGRSWKKNKIEEKAKEIIKLEW 248
            +W RF+EM NPS+SSN       KIKGDR+SKEE  L+ R     KIEEK KE IKLEW
Sbjct: 368 EDWTRFKEM-NPSASSNADPVYRDKIKGDRISKEEF-LKAR----GKIEEKPKE-IKLEW 427

Query: 249 GNGLAQKREAEAELMEFELEKDRPFARTRNDAELDSMMRERPRWGDPLAHLVKKRQSLMV 293
           G GLAQKREAEAELME ELEKDRPFAR+RNDAELDSM+R+R RWGDP+AHLVKKRQS M 
Sbjct: 428 GKGLAQKREAEAELMELELEKDRPFARSRNDAELDSMLRDRLRWGDPMAHLVKKRQSEMA 487

[Close]

BLAST of Sed0024296.1 vs. NCBI nr
Match: XP_022936645.1 (BUD13 homolog [Cucurbita moschata] >XP_022936727.1 BUD13 homolog [Cucurbita moschata])

HSP 1 Score: 305.8 bits (782), Expect = 3.9e-79
Identity = 197/375 (52.53%), Postives = 220/375 (58.67%), Query Frame = 0


Query: 23  HLDYCAQEEEEDIDLSPPRRRRKRYHTPSPE----PVVKIS-QSNM-------------- 82
           HLD+     +EDIDLSPPR+RRKRYHTPSPE    P    S QS+M              
Sbjct: 201 HLDHA----QEDIDLSPPRQRRKRYHTPSPESDGKPTQPFSPQSDMSPPRRVDRQASKSS 260

Query: 83  --------------------------VYI---------------------------RNRV 142
                                      Y+                           +N V
Sbjct: 261 LGVNHKAAGLSDLSPPRRRTSNYAEDAYVSRGSDLSPPRKQRIDVRGDRLLTENNSQNHV 320

Query: 143 V--IHKESPPDVVSPQIRKTLKVPRAH------------------------EEAEWIRFR 202
           V    +ESPPD +SPQ RK  KVP                            + +W RF+
Sbjct: 321 VTDASQESPPD-LSPQ-RKKQKVPPVSVSFKQPRKTGLLTQQEFGEEMSKTNKEDWRRFK 380

Query: 203 EMINPSSSSN-------KIKGDRVSKEELTLEGRSWKKNKIEEKAKEIIKLEWGNGLAQK 262
           EM NPS+SSN       KIKGDR+SKEE         + KIEEK KE IKLEWG GLAQK
Sbjct: 381 EM-NPSASSNAEPIYRDKIKGDRISKEEFLK-----SRGKIEEKPKE-IKLEWGKGLAQK 440

Query: 263 REAEAELMEFELEKDRPFARTRNDAELDSMMRERPRWGDPLAHLVKKRQSLMVLPDSGDC 293
           REAEAE ME ELEKDRPFAR+RNDAELDSM+RER RWGDP+AHLVKK+QS M LPD GD 
Sbjct: 441 REAEAEQMELELEKDRPFARSRNDAELDSMLRERLRWGDPMAHLVKKKQSEMALPDLGDS 500

[Close]

BLAST of Sed0024296.1 vs. ExPASy Swiss-Prot
Match: Q4QQU1 (BUD13 homolog OS=Rattus norvegicus OX=10116 GN=Bud13 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.0e-23
Identity = 87/297 (29.29%), Postives = 133/297 (44.78%), Query Frame = 0


Query: 13  KRYESNTNPEHLDYCAQEEEEDIDLSPPRRRRKRYHT------PSPEPVVKISQSNMVYI 72
           K  +S+ +P   +  +  ++ D DLSPPR R +R  +      P      K S S++   
Sbjct: 368 KASDSDLSPPRKNSKSGHQDSDSDLSPPRNRPRRQSSDSDLSPPRRRQRTKSSDSDLSPS 427

Query: 73  RNRVVIHKESPPDVVSPQIRKTLKVPRAHEEAE-----------WIRFREMINPSSSSNK 132
           R      K++P      +      V R H+E +              F E +    S   
Sbjct: 428 RRSPRSGKKTPHMYSGAKTGLVADVQREHQELKKQDQDATDLGAQFEFTETVFRDKSGR- 487

Query: 133 IKGDRVSKEELTLEGRSWKKNKIEEKAKEIIKLEWGNGLAQKREAEAELMEFELEKDRPF 192
                  K  L LE    ++   ++  ++ +  +WG GLAQ R+ +  + +   E  +P 
Sbjct: 488 -------KRNLKLERLEQRRKAEKDSERDELYAQWGKGLAQSRQQQQNVEDAMKEMQKPL 547

Query: 193 ARTRNDAELDSMMRERPRWGDPLAHLVKKRQSLMVLPDSGDCEKMKESGFIVPQDIPPHS 252
           AR  +D +LD M+RE+ R GDP+A+ +KK ++           K  ++  + P+   P  
Sbjct: 548 ARYIDDEDLDRMLREQEREGDPMANFIKKNKA-----------KENKNKKVRPRYNGP-- 607

Query: 253 WLKTGFDAAVPNRYGIKPGRHWDGVDRSNGFENLMFKRMNQKGATEKEAYLWSVSDM 293
                  A  PNR+ I PG  WDGVDRSNGFE   F R+  K A E+ AY WSV DM
Sbjct: 608 -------APPPNRFNIWPGYRWDGVDRSNGFEQKRFARLASKKAVEELAYKWSVEDM 636

[Close]

BLAST of Sed0024296.1 vs. ExPASy Swiss-Prot
Match: Q8R149 (BUD13 homolog OS=Mus musculus OX=10090 GN=Bud13 PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.7e-22
Identity = 87/299 (29.10%), Postives = 132/299 (44.15%), Query Frame = 0


Query: 11  YIKRYESNTNPEHLDYCAQEEEEDIDLSPPRRRRKRYHT------PSPEPVVKISQSNMV 70
           Y K  +S+ +P      +  ++ D DLSPPR R +R  +      P      K S S++ 
Sbjct: 367 YQKASDSDLSPPRKKKNSGHQDSDSDLSPPRNRPRRQSSDSDLSPPRRRQRTKSSDSDLS 426

Query: 71  YIRNRVVIHKESPPDVVSPQIRKTLKVPRAHEEAE-----------WIRFREMINPSSSS 130
             R      K++       +      V R H+E +              F E +    S 
Sbjct: 427 PPRRSPRPGKKTAHMYSGAKTGLVTDVQREHQELKKQDQDTTDLGAQFEFTETVFRDKSG 486

Query: 131 NKIKGDRVSKEELTLEGRSWKKNKIEEKAKEIIKLEWGNGLAQKREAEAELMEFELEKDR 190
                    K  L LE    ++   ++  ++ +  +WG GLAQ R+ +  + +   E  +
Sbjct: 487 R--------KRNLKLERLEQRRKAEKDSERDELYAQWGKGLAQSRQQQQNVEDAMKEMQK 546

Query: 191 PFARTRNDAELDSMMRERPRWGDPLAHLVKKRQSLMVLPDSGDCEKMKESGFIVPQDIPP 250
           P AR  +D +LD M+RE+ R GDP+A+ +KK ++           K  ++  + P+   P
Sbjct: 547 PLARYIDDEDLDRMLREQEREGDPMANFIKKNKA-----------KENKNKKVKPRYSGP 606

Query: 251 HSWLKTGFDAAVPNRYGIKPGRHWDGVDRSNGFENLMFKRMNQKGATEKEAYLWSVSDM 293
                    A  PNR+ I PG  WDGVDRSNGFE   F R+  K A E+ AY WSV DM
Sbjct: 607 ---------APPPNRFNIWPGYRWDGVDRSNGFEQKRFARLASKKAVEELAYKWSVEDM 637

[Close]

BLAST of Sed0024296.1 vs. ExPASy Swiss-Prot
Match: Q9BRD0 (BUD13 homolog OS=Homo sapiens OX=9606 GN=BUD13 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.7e-21
Identity = 78/264 (29.55%), Postives = 129/264 (48.86%), Query Frame = 0


Query: 29  QEEEEDIDLSPPRRRRKRYHTPSPEPVVKISQSNMVYIRNRVVIHKESPPDVVSPQIRKT 88
           +    D DLSPPRRR++   T S +  +   + +    +    ++  +   +V   I++ 
Sbjct: 382 RHRSSDSDLSPPRRRQR---TKSSDSDLSPPRRSQPPGKKAAHMYSGAKTGLVLTDIQRE 441

Query: 89  LKVPRAHEEAEWIRFREMINPSSSSNKIKGDRVSKEELTLEGRSWKKNKIEEKAKEIIKL 148
            +  +  ++ E + F      + +  + K  R  K  L LE    ++   ++  ++ +  
Sbjct: 442 QQELK-EQDQETMAFEAEFQYAETVFRDKSGR--KRNLKLERLEQRRKAEKDSERDELYA 501

Query: 149 EWGNGLAQKREAEAELMEFELEKDRPFARTRNDAELDSMMRERPRWGDPLAHLVKKRQSL 208
           +WG GLAQ R+ +  + +   E  +P AR  +D +LD M+RE+ R GDP+A+ +KK ++ 
Sbjct: 502 QWGKGLAQSRQQQQNVEDAMKEMQKPLARYIDDEDLDRMLREQEREGDPMANFIKKNKA- 561

Query: 209 MVLPDSGDCEKMKESGFIVPQDIPPHSWLKTGFDAAVPNRYGIKPGRHWDGVDRSNGFEN 268
                     K  ++  + P+   P         A  PNR+ I PG  WDGVDRSNGFE 
Sbjct: 562 ----------KENKNKKVRPRYSGP---------APPPNRFNIWPGYRWDGVDRSNGFEQ 619

Query: 269 LMFKRMNQKGATEKEAYLWSVSDM 293
             F R+  K A E+ AY WSV DM
Sbjct: 622 KRFARLASKKAVEELAYKWSVEDM 619

[Close]

BLAST of Sed0024296.1 vs. ExPASy Swiss-Prot
Match: Q5ZIJ0 (BUD13 homolog OS=Gallus gallus OX=9031 GN=BUD13 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.0e-19
Identity = 62/169 (36.69%), Postives = 87/169 (51.48%), Query Frame = 0


Query: 131 RSWKKNKIEEKAKEIIKLE-------WGNGLAQKREAEAELMEFELEKDRPFARTRNDAE 190
           R   + ++E++ K+  K E       WG GLAQ R+ +  + +   E  +P AR  +D +
Sbjct: 411 RDLVQERLEQQQKDEAKSERDEQYARWGRGLAQGRQQQQNVEDAIKEMQKPLARYIDDED 470

Query: 191 LDSMMRERPRWGDPLAHLVKKRQSLMVLPDSGDCEKMKESGFIVPQDIPPHSWLKTGFDA 250
           LD M+RE+ R GDP+A  ++KR++          EK + SG       PP          
Sbjct: 471 LDRMLREQEREGDPMAEFIRKRKA---KESKEKKEKPRYSG-----PAPP---------- 530

Query: 251 AVPNRYGIKPGRHWDGVDRSNGFENLMFKRMNQKGATEKEAYLWSVSDM 293
              NR+ I PG  WDGVDRSNGFE   F RM  K A ++ AY WS+ DM
Sbjct: 531 --LNRFNIWPGHRWDGVDRSNGFEQQFFARMANKKAVQELAYKWSIEDM 559

[Close]

BLAST of Sed0024296.1 vs. ExPASy Swiss-Prot
Match: O94417 (Pre-mRNA-splicing factor cwf26 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cwf26 PE=1 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 3.4e-17
Identity = 62/198 (31.31%), Postives = 93/198 (46.97%), Query Frame = 0


Query: 96  EEAEWIRFREMINPSSSSNKIKGDRVSKEELTLEGRSWKKNKIEEKAKEIIK-LEWGNGL 155
           +E E  + RE +   ++  +I        +L L  R   K K++EK +E  +  E   G+
Sbjct: 145 DEEELRKSRETVYRDATGRRI--------DLVL-ARKEAKRKLKEKEEEARRQKEQQQGV 204

Query: 156 AQKREAEAELMEFELEKDRPFARTRNDAELDSMMRERPRWGDPLAHLVKKRQSLMVLPDS 215
            Q R+ +  L E E +K  P AR  +D E +  ++ER RW DP A  +  +         
Sbjct: 205 VQVRQQKEYLKELERQKTVPLARYEDDPEYNKELKERSRWNDPAASFLTNK--------- 264

Query: 216 GDCEKMKESGFIVPQDIPPHSWLKTGFDAAVPNRYGIKPGRHWDGVDRSNGFENLMFKRM 275
                             P S   T    A PNR+ I+PG  WDG+ R NGFEN  F+R 
Sbjct: 265 ------------------PVSSKATYQGYAPPNRFNIRPGHRWDGIIRGNGFENKWFQRQ 306

Query: 276 NQKGATEKEAYLWSVSDM 293
           N++ A E EA++W++ DM
Sbjct: 325 NERKAQEHEAHMWAIEDM 306

[Close]

BLAST of Sed0024296.1 vs. ExPASy TrEMBL
Match: A0A6J1KX65 (BUD13 homolog OS=Cucurbita maxima OX=3661 GN=LOC111498375 PE=3 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 5.9e-81
Identity = 198/374 (52.94%), Postives = 220/374 (58.82%), Query Frame = 0


Query: 23  HLDYCAQEEEEDIDLSPPRRRRKRYHTPSPEPVVK--------------------ISQSN 82
           HLD+     +EDIDLSPPR+RRKRYHTPSPEP  K                     S+SN
Sbjct: 201 HLDHA----QEDIDLSPPRQRRKRYHTPSPEPDGKPTQTFSPQSDMSPPRRVDRQASKSN 260

Query: 83  M-------------------------VYI---------RNRVV----------------- 142
           +                          Y+         RN  V                 
Sbjct: 261 LGVNHKAAGLSDLSPPRRRTSNYAEDAYVSRGSYLSPPRNHRVDVRGDRLLTKNNSQNHV 320

Query: 143 --IHKESPPDVVSPQIRKTLKVPRAH------------------------EEAEWIRFRE 202
               +ESPPD +SPQ RK  KVP                            + +W RF+E
Sbjct: 321 TDASQESPPD-LSPQ-RKQQKVPPVSVSFKQPRKTGLLTQQEFGEEVSKTNKEDWTRFKE 380

Query: 203 MINPSSSSN-------KIKGDRVSKEELTLEGRSWKKNKIEEKAKEIIKLEWGNGLAQKR 262
           M NPS+SSN       KIKGDR+SKEE         + KIEEK KE IKLEWG GLAQKR
Sbjct: 381 M-NPSASSNAEPIYRDKIKGDRISKEEFLK-----SRGKIEEKPKE-IKLEWGKGLAQKR 440

Query: 263 EAEAELMEFELEKDRPFARTRNDAELDSMMRERPRWGDPLAHLVKKRQSLMVLPDSGDCE 293
           EAEAE ME ELEKDRPFAR+RNDAELDSM+RER RWGDP+AHLVKKRQS M LPD GD E
Sbjct: 441 EAEAEQMELELEKDRPFARSRNDAELDSMLRERLRWGDPMAHLVKKRQSEMALPDLGDSE 500

[Close]

BLAST of Sed0024296.1 vs. ExPASy TrEMBL
Match: A0A0A0LTH5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G428990 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.3e-80
Identity = 193/382 (50.52%), Postives = 223/382 (58.38%), Query Frame = 0


Query: 9   KEYIKRYESNTNPEHLDYCAQEEEEDIDLSPPRRRRKRYHTPSPEPVV------------ 68
           K Y   +    N  H+DY     +EDIDLSPPR+RRKRYHTPSPEP              
Sbjct: 187 KVYRDAHLQGANSWHIDYA----QEDIDLSPPRQRRKRYHTPSPEPDATCTRSVSPQFDI 246

Query: 69  --------KISQSNM----------------VYI-------------------------- 128
                   K S++++                 Y+                          
Sbjct: 247 SPPRRSDRKASKTSLGGNHKVDLSPPRRRASDYVGDERISRGSDLSPPRKQRKDVRGDRS 306

Query: 129 ------RNRVVIHKESPPDVVSPQIRKTLKVP-----------------------RAHEE 188
                 RN V    +  P  +SP  +K  ++P                           +
Sbjct: 307 LLDKQSRNHVTDASQESPTDLSPPRKKQKELPVSVSFKQTRKTGLLTQQEFGEEMSKTNK 366

Query: 189 AEWIRFREMINPSSSSN-------KIKGDRVSKEELTLEGRSWKKNKIEEKAKEIIKLEW 248
            +W RF+EM NPS+SSN       KIKGDR+SKEE  L+ R     KIEEKAKE IKLEW
Sbjct: 367 EDWTRFKEM-NPSASSNADPVYRDKIKGDRISKEEF-LKAR----GKIEEKAKE-IKLEW 426

Query: 249 GNGLAQKREAEAELMEFELEKDRPFARTRNDAELDSMMRERPRWGDPLAHLVKKRQSLMV 293
           G GLAQKREAEAELME ELEKDRPFAR+RNDAELD+M+R+R RWGDP+AHLVKKRQS M 
Sbjct: 427 GKGLAQKREAEAELMELELEKDRPFARSRNDAELDTMLRDRLRWGDPMAHLVKKRQSEMA 486

[Close]

BLAST of Sed0024296.1 vs. ExPASy TrEMBL
Match: A0A1S3CHR8 (BUD13 homolog OS=Cucumis melo OX=3656 GN=LOC103501110 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 1.1e-79
Identity = 195/382 (51.05%), Postives = 217/382 (56.81%), Query Frame = 0


Query: 9   KEYIKRYESNTNPEHLDYCAQEEEEDIDLSPPRRRRKRYHTPSPEP-------------- 68
           K Y   +    N  H+D CAQ   EDIDLSPPR+RRKRYHTPSPEP              
Sbjct: 188 KVYRDAHLQGANWGHMD-CAQ---EDIDLSPPRQRRKRYHTPSPEPEATRTRSVSPQSDM 247

Query: 69  ------------------------------------------------------------ 128
                                                                       
Sbjct: 248 SPPRRSDRKASKASLGGNHKVDLSPPRRRASDYVGDEHISRGSDLSPPRKQRKDVRGDRS 307

Query: 129 ---------VVKISQSNMVYIRNRVVIHKESPPDVVSPQIRKTLKVPRAH--------EE 188
                    V   SQ +   +       KE P  V   Q RKT  + +           +
Sbjct: 308 LLDKHSQNHVTDASQESRTDLSPHRKKQKELPVSVSFKQTRKTGLLTQQEFGEEMSKTNK 367

Query: 189 AEWIRFREMINPSSSSN-------KIKGDRVSKEELTLEGRSWKKNKIEEKAKEIIKLEW 248
            +W RF+EM NPS+SSN       KIKGDR+SKEE  L+ R     KIEEK KE IKLEW
Sbjct: 368 EDWTRFKEM-NPSASSNADPVYRDKIKGDRISKEEF-LKAR----GKIEEKPKE-IKLEW 427

Query: 249 GNGLAQKREAEAELMEFELEKDRPFARTRNDAELDSMMRERPRWGDPLAHLVKKRQSLMV 293
           G GLAQKREAEAELME ELEKDRPFAR+RNDAELDSM+R+R RWGDP+AHLVKKRQS M 
Sbjct: 428 GKGLAQKREAEAELMELELEKDRPFARSRNDAELDSMLRDRLRWGDPMAHLVKKRQSEMA 487

[Close]

BLAST of Sed0024296.1 vs. ExPASy TrEMBL
Match: A0A5A7VKV1 (BUD13-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00590 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 1.1e-79
Identity = 195/382 (51.05%), Postives = 217/382 (56.81%), Query Frame = 0


Query: 9   KEYIKRYESNTNPEHLDYCAQEEEEDIDLSPPRRRRKRYHTPSPEP-------------- 68
           K Y   +    N  H+D CAQ   EDIDLSPPR+RRKRYHTPSPEP              
Sbjct: 188 KVYRDAHLQGANWGHMD-CAQ---EDIDLSPPRQRRKRYHTPSPEPEATRTRSVSPQSDM 247

Query: 69  ------------------------------------------------------------ 128
                                                                       
Sbjct: 248 SPPRRSDRKASKASLGGNHKVDLSPPRRRASDYVGDEHISRGSDLSPPRKQRKDVRGDRS 307

Query: 129 ---------VVKISQSNMVYIRNRVVIHKESPPDVVSPQIRKTLKVPRAH--------EE 188
                    V   SQ +   +       KE P  V   Q RKT  + +           +
Sbjct: 308 LLDKHSQNHVTDASQESRTDLSPHRKKQKELPVSVSFKQTRKTGLLTQQEFGEEMSKTNK 367

Query: 189 AEWIRFREMINPSSSSN-------KIKGDRVSKEELTLEGRSWKKNKIEEKAKEIIKLEW 248
            +W RF+EM NPS+SSN       KIKGDR+SKEE  L+ R     KIEEK KE IKLEW
Sbjct: 368 EDWTRFKEM-NPSASSNADPVYRDKIKGDRISKEEF-LKAR----GKIEEKPKE-IKLEW 427

Query: 249 GNGLAQKREAEAELMEFELEKDRPFARTRNDAELDSMMRERPRWGDPLAHLVKKRQSLMV 293
           G GLAQKREAEAELME ELEKDRPFAR+RNDAELDSM+R+R RWGDP+AHLVKKRQS M 
Sbjct: 428 GKGLAQKREAEAELMELELEKDRPFARSRNDAELDSMLRDRLRWGDPMAHLVKKRQSEMA 487

[Close]

BLAST of Sed0024296.1 vs. ExPASy TrEMBL
Match: A0A6J1F993 (BUD13 homolog OS=Cucurbita moschata OX=3662 GN=LOC111443156 PE=3 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.9e-79
Identity = 197/375 (52.53%), Postives = 220/375 (58.67%), Query Frame = 0


Query: 23  HLDYCAQEEEEDIDLSPPRRRRKRYHTPSPE----PVVKIS-QSNM-------------- 82
           HLD+     +EDIDLSPPR+RRKRYHTPSPE    P    S QS+M              
Sbjct: 201 HLDHA----QEDIDLSPPRQRRKRYHTPSPESDGKPTQPFSPQSDMSPPRRVDRQASKSS 260

Query: 83  --------------------------VYI---------------------------RNRV 142
                                      Y+                           +N V
Sbjct: 261 LGVNHKAAGLSDLSPPRRRTSNYAEDAYVSRGSDLSPPRKQRIDVRGDRLLTENNSQNHV 320

Query: 143 V--IHKESPPDVVSPQIRKTLKVPRAH------------------------EEAEWIRFR 202
           V    +ESPPD +SPQ RK  KVP                            + +W RF+
Sbjct: 321 VTDASQESPPD-LSPQ-RKKQKVPPVSVSFKQPRKTGLLTQQEFGEEMSKTNKEDWRRFK 380

Query: 203 EMINPSSSSN-------KIKGDRVSKEELTLEGRSWKKNKIEEKAKEIIKLEWGNGLAQK 262
           EM NPS+SSN       KIKGDR+SKEE         + KIEEK KE IKLEWG GLAQK
Sbjct: 381 EM-NPSASSNAEPIYRDKIKGDRISKEEFLK-----SRGKIEEKPKE-IKLEWGKGLAQK 440

Query: 263 REAEAELMEFELEKDRPFARTRNDAELDSMMRERPRWGDPLAHLVKKRQSLMVLPDSGDC 293
           REAEAE ME ELEKDRPFAR+RNDAELDSM+RER RWGDP+AHLVKK+QS M LPD GD 
Sbjct: 441 REAEAEQMELELEKDRPFARSRNDAELDSMLRERLRWGDPMAHLVKKKQSEMALPDLGDS 500

[Close]

BLAST of Sed0024296.1 vs. TAIR 10
Match: AT1G31870.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2050, pre-mRNA-splicing factor (InterPro:IPR018609); Has 13303 Blast hits to 9618 proteins in 489 species: Archae - 8; Bacteria - 444; Metazoa - 7153; Fungi - 2294; Plants - 942; Viruses - 128; Other Eukaryotes - 2334 (source: NCBI BLink). )

HSP 1 Score: 235.0 bits (598), Expect = 7.9e-62
Identity = 149/315 (47.30%), Postives = 184/315 (58.41%), Query Frame = 0


Query: 36  DLSPPRRRRKRYHTPSPEPVVKISQS--------------NMVYIRNRVVI--------- 95
           DLSPPRRR  RYH+PSPEP  + S+S              NM   ++  +          
Sbjct: 255 DLSPPRRR--RYHSPSPEPARRSSKSFGSNADLSPPGRNINMKDSQDSDLSPQRKAADLR 314

Query: 96  --------------------HKESPPDVVSPQIRKTLKVP--------RAHEEAEWIRFR 155
                                ++S P  +S + RKT  +         R  +E E +RF+
Sbjct: 315 RSSENVSRSSNFDSSPPRRPRRDSSPPQISKEQRKTGLISGKDIGSEYRKKKEDEKLRFK 374

Query: 156 EMINPSSSSN-------KIKGDRVSKEELTLEGRSWKKNKIEEKAKEIIKLEWGNGLAQK 215
            M +  +  N       KI G R+SKEE        K+ K+ EK KE IKLEWG GLAQK
Sbjct: 375 NMDSELTGQNAEAVFRDKITGKRISKEEYLKS----KQKKVIEKPKE-IKLEWGKGLAQK 434

Query: 216 REAEAELMEFELEKDRPFARTRNDAELDSMMRERPRWGDPLAHLVKKRQSLMVLPDSGDC 275
           REAEA L E ELEKD+PFARTR+D ELD MM+ER R+GDP+AHLVKKR+    L D GD 
Sbjct: 435 REAEARLQELELEKDKPFARTRDDPELDQMMKERVRFGDPMAHLVKKRKYETTLVDLGDD 494

Query: 276 EKMKESGFIVPQDIPPHSWLKTGFDAAVPNRYGIKPGRHWDGVDRSNGFENLMFKRMNQK 293
           E+MK+SGFI+PQ +P HSWL    +AA  NRYGIKPGRHWDGVDRSNG E  + K+ N++
Sbjct: 495 EEMKKSGFIIPQSVPKHSWLTRRLEAA-SNRYGIKPGRHWDGVDRSNGTEKDLIKKTNER 554

[Close]

BLAST of Sed0024296.1 vs. TAIR 10
Match: AT1G31870.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2050, pre-mRNA-splicing factor (InterPro:IPR018609); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 235.0 bits (598), Expect = 7.9e-62
Identity = 149/315 (47.30%), Postives = 184/315 (58.41%), Query Frame = 0


Query: 36  DLSPPRRRRKRYHTPSPEPVVKISQS--------------NMVYIRNRVVI--------- 95
           DLSPPRRR  RYH+PSPEP  + S+S              NM   ++  +          
Sbjct: 255 DLSPPRRR--RYHSPSPEPARRSSKSFGSNADLSPPGRNINMKDSQDSDLSPQRKAADLR 314

Query: 96  --------------------HKESPPDVVSPQIRKTLKVP--------RAHEEAEWIRFR 155
                                ++S P  +S + RKT  +         R  +E E +RF+
Sbjct: 315 RSSENVSRSSNFDSSPPRRPRRDSSPPQISKEQRKTGLISGKDIGSEYRKKKEDEKLRFK 374

Query: 156 EMINPSSSSN-------KIKGDRVSKEELTLEGRSWKKNKIEEKAKEIIKLEWGNGLAQK 215
            M +  +  N       KI G R+SKEE        K+ K+ EK KE IKLEWG GLAQK
Sbjct: 375 NMDSELTGQNAEAVFRDKITGKRISKEEYLKS----KQKKVIEKPKE-IKLEWGKGLAQK 434

Query: 216 REAEAELMEFELEKDRPFARTRNDAELDSMMRERPRWGDPLAHLVKKRQSLMVLPDSGDC 275
           REAEA L E ELEKD+PFARTR+D ELD MM+ER R+GDP+AHLVKKR+    L D GD 
Sbjct: 435 REAEARLQELELEKDKPFARTRDDPELDQMMKERVRFGDPMAHLVKKRKYETTLVDLGDD 494

Query: 276 EKMKESGFIVPQDIPPHSWLKTGFDAAVPNRYGIKPGRHWDGVDRSNGFENLMFKRMNQK 293
           E+MK+SGFI+PQ +P HSWL    +AA  NRYGIKPGRHWDGVDRSNG E  + K+ N++
Sbjct: 495 EEMKKSGFIIPQSVPKHSWLTRRLEAA-SNRYGIKPGRHWDGVDRSNGTEKDLIKKTNER 554

The following BLAST results are available for this feature:

BLAST of Sed0024296.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005354.1	1.2e-80	52.94	BUD13 homolog [Cucurbita maxima] >XP_023005355.1 BUD13 homolog [Cucurbita maxima...	[more]
XP_011650042.1	2.7e-80	50.52	BUD13 homolog [Cucumis sativus] >XP_031737093.1 BUD13 homolog [Cucumis sativus] ...	[more]
KAG6596913.1	1.8e-79	52.53	BUD13-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030189....	[more]
XP_008462822.1	2.3e-79	51.05	PREDICTED: BUD13 homolog [Cucumis melo] >XP_008462824.1 PREDICTED: BUD13 homolog...	[more]
XP_022936645.1	3.9e-79	52.53	BUD13 homolog [Cucurbita moschata] >XP_022936727.1 BUD13 homolog [Cucurbita mosc...	[more]

BLAST of Sed0024296.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4QQU1	7.0e-23	29.29	BUD13 homolog OS=Rattus norvegicus OX=10116 GN=Bud13 PE=1 SV=1	[more]
Q8R149	2.7e-22	29.10	BUD13 homolog OS=Mus musculus OX=10090 GN=Bud13 PE=1 SV=1	[more]
Q9BRD0	1.7e-21	29.55	BUD13 homolog OS=Homo sapiens OX=9606 GN=BUD13 PE=1 SV=1	[more]
Q5ZIJ0	8.0e-19	36.69	BUD13 homolog OS=Gallus gallus OX=9031 GN=BUD13 PE=2 SV=1	[more]
O94417	3.4e-17	31.31	Pre-mRNA-splicing factor cwf26 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of Sed0024296.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KX65	5.9e-81	52.94	BUD13 homolog OS=Cucurbita maxima OX=3661 GN=LOC111498375 PE=3 SV=1	[more]
A0A0A0LTH5	1.3e-80	50.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G428990 PE=3 SV=1	[more]
A0A1S3CHR8	1.1e-79	51.05	BUD13 homolog OS=Cucumis melo OX=3656 GN=LOC103501110 PE=3 SV=1	[more]
A0A5A7VKV1	1.1e-79	51.05	BUD13-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G0...	[more]
A0A6J1F993	1.9e-79	52.53	BUD13 homolog OS=Cucurbita moschata OX=3662 GN=LOC111443156 PE=3 SV=1	[more]

BLAST of Sed0024296.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31870.1	7.9e-62	47.30	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G31870.2	7.9e-62	47.30	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018609	Bud13	PFAM	PF09736	Bud13	coord: 120..275 e-value: 9.1E-34 score: 116.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..54
None	No IPR available	PANTHER	PTHR31809	BUD13 HOMOLOG	coord: 99..292

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0024296	Sed0024296	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0024296.1-three_prime_utr	Sed0024296.1-three_prime_utr-LG12:4078199..4078687	three_prime_UTR
Sed0024296.1-three_prime_utr	Sed0024296.1-three_prime_utr-LG12:4078833..4078860	three_prime_UTR
Sed0024296.1-three_prime_utr	Sed0024296.1-three_prime_utr-LG12:4078944..4079043	three_prime_UTR
Sed0024296.1-three_prime_utr	Sed0024296.1-three_prime_utr-LG12:4079408..4079475	three_prime_UTR
Sed0024296.1-three_prime_utr	Sed0024296.1-three_prime_utr-LG12:4080750..4080829	three_prime_UTR
Sed0024296.1-three_prime_utr	Sed0024296.1-three_prime_utr-LG12:4081140..4081201	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0024296.1-exon	Sed0024296.1-exon-LG12:4078199..4078687	exon
Sed0024296.1-exon	Sed0024296.1-exon-LG12:4078833..4078860	exon
Sed0024296.1-exon	Sed0024296.1-exon-LG12:4078944..4079043	exon
Sed0024296.1-exon	Sed0024296.1-exon-LG12:4079408..4079475	exon
Sed0024296.1-exon	Sed0024296.1-exon-LG12:4080750..4080829	exon
Sed0024296.1-exon	Sed0024296.1-exon-LG12:4081140..4082296	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0024296.1-cds	Sed0024296.1-cds-LG12:4081202..4082080	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0024296.1-five_prime_utr	Sed0024296.1-five_prime_utr-LG12:4082081..4082296	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0024296.1	Sed0024296.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus