Sed0023686.1 (mRNA) Chayote v1

Overview


Name	Sed0023686.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	nucleolin 2-like isoform X1
Location	LG10: 1056546 .. 1058199 (-)
Sequence length	783
RNA-Seq Expression	Sed0023686.1
Synteny	Sed0023686.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTCAGGTGCTAAGAAGCGAAAAGCTGCCAAGAAAAAGAAGCAATTGCAAGGAGGATCCCAAATCAACCCTTCTTCCAGCACTTCTCAAGGTACCCTTTTTTTTTATTTAAGCCCATTTGTTCATTTTCTGCCTTTGATTCCATCCAGTTATGTTATGTAATTTGTGAAGTGGGTTTTGCCTGTTATTCCTCATTGCTTTTGGGATCTGATTTTATTGCATTTTCTATTGATTTCAGCCCACCCCCCTCAAGGTCCGGGCCTTGGGATGGGTGTGGTGCTGGTGATGATGCACTCGGACATGTAGTGGGGCGAAGCTCTAATTTGGGTTATCATAAGTAAATAGAATCCCCCACCCATCTATTTTATTATTGTCTTGACCTATATAGTCTTTTGGTAGATTCAAATTTCCCCTGTTTTTTAAGCTTGAATTTCCCCCCTTTTGATTGTTTAATTAAGTTTTTTATGGGTTCTCTGTTAATCAATCACAATGTTTAATTAGTTTTAATTTCTTTGGCTTGCTTCTGGTTGAAATTGTTGGGTCAAGTCATTGGTTTGAATTGGGTTTACATAGTAAGCCCTTTTGAAGTAACTTTATCCCTTTTTCCAATTGGGGTTTTACATGATTCTGTTTTGGTTTATTCCTTCTATTATTTTCCATGCCAGGAAATGAGGATGTTAAGAACCAAGATGATAAGGGAAGTGACAATGGTGAGATTGATTCCCCAACTTCTCAGAATCATGTAAGTGACAGCCATCCATTTGGTGAGGTGGATAAGGAAATACAAGCGAGCAGCGTGTTGAACTCTGCAGGTGCGAGCAATGTAGAGACCAATCAGAAAGTAAAAGGATCACATGATGGCGATCATAGTACCAGCACTAGCACTAGTACTAGTACGAGCAGCAGTAGTAGCAGTTCAGATGCTGAAGATACAACCAAGAAACCCGAGGTATGTATAAAGCCGAAATCGAATCGTACTTTGATAGATTAGATTAATTTGTGCCTCTAGAATCTTATAAGGTGGATGAATAGGTACCGGATGGGAAGACAGACGATTTGGTTGTGCCAATTGCTGCCTCAATAGTTAACTCGGTTACACCAGAGGTCTTGGCATCTGAGGAAACTATCGATATTGTTGAAAGTGCATCGGTTGAAAATACAACCGTACCTGATTTAATTGCTTCAAAAAAGTTGGAGACGGTACCCTCCCGTGCAAATGAAGTTACATATGTGCCAGTGACAGCTACAAGGGACATATCATCAAAGCCTGAAGATGGAAATTTACATTTATCAGGTGAATCTGTAAATAGGACACTTTTGTTCTGGTACCTTTGGCTTTGAATTTGCATCTAAAATTTATAGATTGAAAACATACTGCCATTGCTAGTTGGTATGACTGAAACTATTAATTTTGCAGCACATATCACTGAAAGTCCAGAAAGTTTCAACCCTGAATCAGAAGATCAGGTTTTTTCTGATTTCCTGTTACTACGAACATAGCAGCACATCATTTGTTAATATTTGAGAGCTGAGGCTTTTCTTTTTATTTTTTGTGCAGCCGTTGATTGAACCGAGGCCACCGGTGCCTCAAAGGACCTCATGGTTGAGTTGCTGTGGTTTATGTGACATAATTACAGGCTCGAACCGATAG

mRNA sequence

ATGCCCTCAGGTGCTAAGAAGCGAAAAGCTGCCAAGAAAAAGAAGCAATTGCAAGGAGGATCCCAAATCAACCCTTCTTCCAGCACTTCTCAAGGAAATGAGGATGTTAAGAACCAAGATGATAAGGGAAGTGACAATGGTGAGATTGATTCCCCAACTTCTCAGAATCATGTAAGTGACAGCCATCCATTTGGTGAGGTGGATAAGGAAATACAAGCGAGCAGCGTGTTGAACTCTGCAGGTGCGAGCAATGTAGAGACCAATCAGAAAGTAAAAGGATCACATGATGGCGATCATAGTACCAGCACTAGCACTAGTACTAGTACGAGCAGCAGTAGTAGCAGTTCAGATGCTGAAGATACAACCAAGAAACCCGAGGTACCGGATGGGAAGACAGACGATTTGGTTGTGCCAATTGCTGCCTCAATAGTTAACTCGGTTACACCAGAGGTCTTGGCATCTGAGGAAACTATCGATATTGTTGAAAGTGCATCGGTTGAAAATACAACCGTACCTGATTTAATTGCTTCAAAAAAGTTGGAGACGGTACCCTCCCGTGCAAATGAAGTTACATATGTGCCAGTGACAGCTACAAGGGACATATCATCAAAGCCTGAAGATGGAAATTTACATTTATCAGCACATATCACTGAAAGTCCAGAAAGTTTCAACCCTGAATCAGAAGATCAGCCGTTGATTGAACCGAGGCCACCGGTGCCTCAAAGGACCTCATGGTTGAGTTGCTGTGGTTTATGTGACATAATTACAGGCTCGAACCGATAG

Coding sequence (CDS)

ATGCCCTCAGGTGCTAAGAAGCGAAAAGCTGCCAAGAAAAAGAAGCAATTGCAAGGAGGATCCCAAATCAACCCTTCTTCCAGCACTTCTCAAGGAAATGAGGATGTTAAGAACCAAGATGATAAGGGAAGTGACAATGGTGAGATTGATTCCCCAACTTCTCAGAATCATGTAAGTGACAGCCATCCATTTGGTGAGGTGGATAAGGAAATACAAGCGAGCAGCGTGTTGAACTCTGCAGGTGCGAGCAATGTAGAGACCAATCAGAAAGTAAAAGGATCACATGATGGCGATCATAGTACCAGCACTAGCACTAGTACTAGTACGAGCAGCAGTAGTAGCAGTTCAGATGCTGAAGATACAACCAAGAAACCCGAGGTACCGGATGGGAAGACAGACGATTTGGTTGTGCCAATTGCTGCCTCAATAGTTAACTCGGTTACACCAGAGGTCTTGGCATCTGAGGAAACTATCGATATTGTTGAAAGTGCATCGGTTGAAAATACAACCGTACCTGATTTAATTGCTTCAAAAAAGTTGGAGACGGTACCCTCCCGTGCAAATGAAGTTACATATGTGCCAGTGACAGCTACAAGGGACATATCATCAAAGCCTGAAGATGGAAATTTACATTTATCAGCACATATCACTGAAAGTCCAGAAAGTTTCAACCCTGAATCAGAAGATCAGCCGTTGATTGAACCGAGGCCACCGGTGCCTCAAAGGACCTCATGGTTGAGTTGCTGTGGTTTATGTGACATAATTACAGGCTCGAACCGATAG

Protein sequence

MPSGAKKRKAAKKKKQLQGGSQINPSSSTSQGNEDVKNQDDKGSDNGEIDSPTSQNHVSDSHPFGEVDKEIQASSVLNSAGASNVETNQKVKGSHDGDHSTSTSTSTSTSSSSSSSDAEDTTKKPEVPDGKTDDLVVPIAASIVNSVTPEVLASEETIDIVESASVENTTVPDLIASKKLETVPSRANEVTYVPVTATRDISSKPEDGNLHLSAHITESPESFNPESEDQPLIEPRPPVPQRTSWLSCCGLCDIITGSNR

Homology

[Close]

BLAST of Sed0023686.1 vs. NCBI nr
Match: XP_022142230.1 (uncharacterized protein LOC111012397 [Momordica charantia])

HSP 1 Score: 279.6 bits (714), Expect = 2.7e-71
Identity = 180/270 (66.67%), Postives = 205/270 (75.93%), Query Frame = 0


Query: 1   MPSGAKKRKAAKKKKQLQGGSQINPSSSTSQGNEDVKNQDDKGSDNGEIDSPTSQNHVSD 60
           MPSGAKKRKAAKKKK+L  G+ INPSS+TSQGN+DVK+QDDKGSD+GE+DSP SQNH S 
Sbjct: 1   MPSGAKKRKAAKKKKEL--GAHINPSSNTSQGNDDVKSQDDKGSDSGELDSPASQNHPSH 60

Query: 61  SHPFGEVDKEIQASSVLNSAGASNVETNQKVKGSHDGDHSTSTSTSTSTS-----SSSSS 120
           S+PFGE +KEIQ SS  +S   SN+ETNQKV  + +  + T  + S   S     SSSSS
Sbjct: 61  SNPFGEGNKEIQESSSSSSRVLSNIETNQKVGLASESKNGTVQNESVEGSCANDRSSSSS 120

Query: 121 SDAE--DTTKKPEVPDGKTDDLVVPIAASIVNSVTPEVLASEETIDIVESASVENTTVPD 180
           SD E  DTTK  EV DGKT+DLVVP AASIV SVTPEV ASEETI IVESASVENT +PD
Sbjct: 121 SDDESVDTTKNSEVLDGKTNDLVVPTAASIVYSVTPEVSASEETISIVESASVENTAIPD 180

Query: 181 LIASKKLETVPSRANEVTYVPVTATRDISSK-PEDGNLHLSAHI--TESPESFNPESEDQ 240
           +IAS+KL T   R  EVT VPV+A  D+S K  ED +LHLS HI  +E PE+F PESEDQ
Sbjct: 181 IIASEKLGT---RLPEVTNVPVSAPTDLSLKQDEDRDLHLSVHIEVSECPENFKPESEDQ 240

Query: 241 PLIEPRPPVPQRTSWLSCCGLCDIITGSNR 261
           P I  RP VPQRTSW SCCGLCD+ TGSNR
Sbjct: 241 PFIGSRPAVPQRTSWWSCCGLCDVFTGSNR 265

[Close]

BLAST of Sed0023686.1 vs. NCBI nr
Match: XP_004134611.1 (uncharacterized protein LOC101202888 isoform X1 [Cucumis sativus])

HSP 1 Score: 276.2 bits (705), Expect = 3.0e-70
Identity = 175/270 (64.81%), Postives = 201/270 (74.44%), Query Frame = 0


Query: 1   MPSGAKKRKAAKKKKQLQGGSQINPSSSTSQGNEDVKNQDDKGSDNGEIDSPTSQNHVSD 60
           MPSGAKKRKAAKKKK+L+  + INP    SQG +D KNQDDKGSD+GEIDSP SQNH S 
Sbjct: 1   MPSGAKKRKAAKKKKELE--AHINP----SQGKDDAKNQDDKGSDSGEIDSPASQNHPSH 60

Query: 61  SHPFGEVDKEIQASSVLNSAGASNVETNQKVKGSHD------GDHSTSTSTSTSTSSSSS 120
           S+PFGE +KEIQ SS  ++   SNV TNQKVK S +       + S   S     SSSSS
Sbjct: 61  SNPFGEGNKEIQESSSSDAGVPSNVGTNQKVKLSSERKNGNVENESVKGSRDDDHSSSSS 120

Query: 121 SSDAEDTTKKPEVPDGKTDDLVVPIAASIVNSVTPEVLASEETIDIVESASVENTTVPDL 180
             ++ DTTKKPEV DGKTDDLVVP AASI+NS+TPE+ ASEETI I ESASVENT +PD+
Sbjct: 121 DDESVDTTKKPEVLDGKTDDLVVPTAASILNSITPELSASEETISIAESASVENTAIPDM 180

Query: 181 IASKKLETVP-SRANEVTYVPVTATRDISSKP-EDGNLHLSAHI--TESPESFNPESEDQ 240
           I SKKLET P   A+ VT VPV A RD SSKP ED NLH+SAH+  +E  E+  PESEDQ
Sbjct: 181 IVSKKLETTPFHSADGVTNVPVEAPRDPSSKPNEDRNLHISAHVENSECAENSKPESEDQ 240

Query: 241 PLIEPRPPVPQRTSWLSCCGLCDIITGSNR 261
           PLI  RPPVPQR+SWLSCCGLCD+ T S+R
Sbjct: 241 PLIGSRPPVPQRSSWLSCCGLCDVFTSSDR 264

[Close]

BLAST of Sed0023686.1 vs. NCBI nr
Match: XP_038882131.1 (uncharacterized protein LOC120073379 [Benincasa hispida])

HSP 1 Score: 271.9 bits (694), Expect = 5.6e-69
Identity = 176/276 (63.77%), Postives = 201/276 (72.83%), Query Frame = 0


Query: 1   MPSGAKKRKAAKKKKQLQGGSQINPSSSTSQGNEDVKNQDDKGSDNGEIDSPTSQNHVSD 60
           MPSGAKKRKAAKKKK+L+  + INP    SQGNED KNQDDKGSD+GEIDSP SQNH S 
Sbjct: 1   MPSGAKKRKAAKKKKELE--AHINP----SQGNEDAKNQDDKGSDSGEIDSPASQNHPSH 60

Query: 61  SHPFGEVDKEIQASSVLNSAGASNVETNQKV------KGSHDGDHSTSTSTSTSTSSSSS 120
           S+PFGE  KEIQ SS  ++  +SNV TNQKV      K  +  + S   S +   SSSSS
Sbjct: 61  SNPFGEGSKEIQESSSSDAGVSSNVGTNQKVGLVSERKNGNVQNESVKGSRADDHSSSSS 120

Query: 121 SSDAEDTTKKPEVPDGKTDDLVVPIAASIVNSVTPEVLASEETIDIVESASVENTTVPDL 180
             ++ D TKKPEV DGKT+DLVVP AASIV+S+TPE+ ASEETI I ESASVENT  PD+
Sbjct: 121 DDESVDPTKKPEVLDGKTNDLVVPTAASIVDSITPELSASEETISIAESASVENTATPDM 180

Query: 181 IASKKLETVP-SRANEVTYVPVTATRDISSKP-EDGNLHLS--------AHITESPESFN 240
           I SKKLET P S  + VTYV VTA RD+SSKP ED NLHLS        A  +ES ++  
Sbjct: 181 IVSKKLETTPFSTTDGVTYVLVTAPRDLSSKPNEDRNLHLSGTNNFAAHAKNSESAKNSK 240

Query: 241 PESEDQPLIEPRPPVPQRTSWLSCCGLCDIITGSNR 261
           PESEDQPLI  RPPVPQRTSWLSCCGLCD+ T S+R
Sbjct: 241 PESEDQPLIGSRPPVPQRTSWLSCCGLCDVFTSSDR 270

[Close]

BLAST of Sed0023686.1 vs. NCBI nr
Match: TYK13245.1 (uncharacterized protein E5676_scaffold255G008630 [Cucumis melo var. makuwa])

HSP 1 Score: 270.0 bits (689), Expect = 2.1e-68
Identity = 171/270 (63.33%), Postives = 201/270 (74.44%), Query Frame = 0


Query: 1   MPSGAKKRKAAKKKKQLQGGSQINPSSSTSQGNEDVKNQDDKGSDNGEIDSPTSQNHVSD 60
           MPSGAKKRKAAKKKK+L+  + INP    +QGNE+ KNQDDKGSD+GEIDSP SQNH S 
Sbjct: 1   MPSGAKKRKAAKKKKELE--AHINP----AQGNENAKNQDDKGSDSGEIDSPASQNHPSH 60

Query: 61  SHPFGEVDKEIQASSVLNSAGASNVETNQKVKGSHD------GDHSTSTSTSTSTSSSSS 120
           S+PFGE +KEIQ SS  ++   SNV T+QKVK S +       + S   S     SSSSS
Sbjct: 61  SNPFGEGNKEIQESSSSDAGVPSNVGTDQKVKLSSERKNGNVENESVKGSRDDDHSSSSS 120

Query: 121 SSDAEDTTKKPEVPDGKTDDLVVPIAASIVNSVTPEVLASEETIDIVESASVENTTVPDL 180
             ++ DTTKKPEV DGKTDDLVVP AASI+NS+TPE+  SEETI I ESASVENT +PD+
Sbjct: 121 DDESVDTTKKPEVLDGKTDDLVVPTAASILNSITPELSTSEETISIAESASVENTAIPDM 180

Query: 181 IASKKLETVP-SRANEVTYVPVTATRDISSKP-EDGNLHLSAHI--TESPESFNPESEDQ 240
           I SKKLET P   A+ VT V + A RD+SSKP ED NLH+SAH+  +ES E+   ESEDQ
Sbjct: 181 IVSKKLETTPFQSADGVTNVSMAAPRDLSSKPNEDRNLHVSAHVANSESAENSKTESEDQ 240

Query: 241 PLIEPRPPVPQRTSWLSCCGLCDIITGSNR 261
           PLI  RPPVPQR+SWLSCCGLCD+ T S+R
Sbjct: 241 PLIGSRPPVPQRSSWLSCCGLCDVFTSSDR 264

[Close]

BLAST of Sed0023686.1 vs. NCBI nr
Match: XP_008439686.1 (PREDICTED: uncharacterized protein LOC103484406 [Cucumis melo])

HSP 1 Score: 269.6 bits (688), Expect = 2.8e-68
Identity = 171/270 (63.33%), Postives = 201/270 (74.44%), Query Frame = 0


Query: 1   MPSGAKKRKAAKKKKQLQGGSQINPSSSTSQGNEDVKNQDDKGSDNGEIDSPTSQNHVSD 60
           MPSGAKKRKAAKKKK+L+  + INP    +QGNE+ KNQDDKGSD+GEIDSP SQNH S 
Sbjct: 1   MPSGAKKRKAAKKKKELE--AHINP----AQGNENAKNQDDKGSDSGEIDSPASQNHPSH 60

Query: 61  SHPFGEVDKEIQASSVLNSAGASNVETNQKVKGSHD------GDHSTSTSTSTSTSSSSS 120
           S+PFGE +KEIQ SS  ++   SNV T+QKVK S +       + S   S     SSSSS
Sbjct: 61  SNPFGEGNKEIQESSSSDAGVPSNVGTDQKVKLSSERKNGNVENESVKGSRDDDHSSSSS 120

Query: 121 SSDAEDTTKKPEVPDGKTDDLVVPIAASIVNSVTPEVLASEETIDIVESASVENTTVPDL 180
             ++ DTTKKPEV DGKTDDLVVP AASI+NS+TPE+ ASEETI I ESASVENT +PD+
Sbjct: 121 DDESVDTTKKPEVLDGKTDDLVVPTAASILNSITPELSASEETISIAESASVENTAIPDM 180

Query: 181 IASKKLETVP-SRANEVTYVPVTATRDISSKP-EDGNLHLSAHI--TESPESFNPESEDQ 240
             SKKLET P   A+ VT V + A RD+SSKP ED NLH+SAH+  +ES E+   ESEDQ
Sbjct: 181 TVSKKLETTPFQSADGVTNVSMAAPRDLSSKPNEDRNLHVSAHVANSESAENSKTESEDQ 240

Query: 241 PLIEPRPPVPQRTSWLSCCGLCDIITGSNR 261
           PLI  RPPVPQR+SWLSCCGLCD+ T S+R
Sbjct: 241 PLIGSRPPVPQRSSWLSCCGLCDVFTSSDR 264

[Close]

BLAST of Sed0023686.1 vs. ExPASy TrEMBL
Match: A0A6J1CKC0 (uncharacterized protein LOC111012397 OS=Momordica charantia OX=3673 GN=LOC111012397 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 1.3e-71
Identity = 180/270 (66.67%), Postives = 205/270 (75.93%), Query Frame = 0


Query: 1   MPSGAKKRKAAKKKKQLQGGSQINPSSSTSQGNEDVKNQDDKGSDNGEIDSPTSQNHVSD 60
           MPSGAKKRKAAKKKK+L  G+ INPSS+TSQGN+DVK+QDDKGSD+GE+DSP SQNH S 
Sbjct: 1   MPSGAKKRKAAKKKKEL--GAHINPSSNTSQGNDDVKSQDDKGSDSGELDSPASQNHPSH 60

Query: 61  SHPFGEVDKEIQASSVLNSAGASNVETNQKVKGSHDGDHSTSTSTSTSTS-----SSSSS 120
           S+PFGE +KEIQ SS  +S   SN+ETNQKV  + +  + T  + S   S     SSSSS
Sbjct: 61  SNPFGEGNKEIQESSSSSSRVLSNIETNQKVGLASESKNGTVQNESVEGSCANDRSSSSS 120

Query: 121 SDAE--DTTKKPEVPDGKTDDLVVPIAASIVNSVTPEVLASEETIDIVESASVENTTVPD 180
           SD E  DTTK  EV DGKT+DLVVP AASIV SVTPEV ASEETI IVESASVENT +PD
Sbjct: 121 SDDESVDTTKNSEVLDGKTNDLVVPTAASIVYSVTPEVSASEETISIVESASVENTAIPD 180

Query: 181 LIASKKLETVPSRANEVTYVPVTATRDISSK-PEDGNLHLSAHI--TESPESFNPESEDQ 240
           +IAS+KL T   R  EVT VPV+A  D+S K  ED +LHLS HI  +E PE+F PESEDQ
Sbjct: 181 IIASEKLGT---RLPEVTNVPVSAPTDLSLKQDEDRDLHLSVHIEVSECPENFKPESEDQ 240

Query: 241 PLIEPRPPVPQRTSWLSCCGLCDIITGSNR 261
           P I  RP VPQRTSW SCCGLCD+ TGSNR
Sbjct: 241 PFIGSRPAVPQRTSWWSCCGLCDVFTGSNR 265

[Close]

BLAST of Sed0023686.1 vs. ExPASy TrEMBL
Match: A0A0A0KHZ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G521020 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 1.4e-70
Identity = 175/270 (64.81%), Postives = 201/270 (74.44%), Query Frame = 0


Query: 1   MPSGAKKRKAAKKKKQLQGGSQINPSSSTSQGNEDVKNQDDKGSDNGEIDSPTSQNHVSD 60
           MPSGAKKRKAAKKKK+L+  + INP    SQG +D KNQDDKGSD+GEIDSP SQNH S 
Sbjct: 1   MPSGAKKRKAAKKKKELE--AHINP----SQGKDDAKNQDDKGSDSGEIDSPASQNHPSH 60

Query: 61  SHPFGEVDKEIQASSVLNSAGASNVETNQKVKGSHD------GDHSTSTSTSTSTSSSSS 120
           S+PFGE +KEIQ SS  ++   SNV TNQKVK S +       + S   S     SSSSS
Sbjct: 61  SNPFGEGNKEIQESSSSDAGVPSNVGTNQKVKLSSERKNGNVENESVKGSRDDDHSSSSS 120

Query: 121 SSDAEDTTKKPEVPDGKTDDLVVPIAASIVNSVTPEVLASEETIDIVESASVENTTVPDL 180
             ++ DTTKKPEV DGKTDDLVVP AASI+NS+TPE+ ASEETI I ESASVENT +PD+
Sbjct: 121 DDESVDTTKKPEVLDGKTDDLVVPTAASILNSITPELSASEETISIAESASVENTAIPDM 180

Query: 181 IASKKLETVP-SRANEVTYVPVTATRDISSKP-EDGNLHLSAHI--TESPESFNPESEDQ 240
           I SKKLET P   A+ VT VPV A RD SSKP ED NLH+SAH+  +E  E+  PESEDQ
Sbjct: 181 IVSKKLETTPFHSADGVTNVPVEAPRDPSSKPNEDRNLHISAHVENSECAENSKPESEDQ 240

Query: 241 PLIEPRPPVPQRTSWLSCCGLCDIITGSNR 261
           PLI  RPPVPQR+SWLSCCGLCD+ T S+R
Sbjct: 241 PLIGSRPPVPQRSSWLSCCGLCDVFTSSDR 264

[Close]

BLAST of Sed0023686.1 vs. ExPASy TrEMBL
Match: A0A5D3CNT1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008630 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.0e-68
Identity = 171/270 (63.33%), Postives = 201/270 (74.44%), Query Frame = 0


Query: 1   MPSGAKKRKAAKKKKQLQGGSQINPSSSTSQGNEDVKNQDDKGSDNGEIDSPTSQNHVSD 60
           MPSGAKKRKAAKKKK+L+  + INP    +QGNE+ KNQDDKGSD+GEIDSP SQNH S 
Sbjct: 1   MPSGAKKRKAAKKKKELE--AHINP----AQGNENAKNQDDKGSDSGEIDSPASQNHPSH 60

Query: 61  SHPFGEVDKEIQASSVLNSAGASNVETNQKVKGSHD------GDHSTSTSTSTSTSSSSS 120
           S+PFGE +KEIQ SS  ++   SNV T+QKVK S +       + S   S     SSSSS
Sbjct: 61  SNPFGEGNKEIQESSSSDAGVPSNVGTDQKVKLSSERKNGNVENESVKGSRDDDHSSSSS 120

Query: 121 SSDAEDTTKKPEVPDGKTDDLVVPIAASIVNSVTPEVLASEETIDIVESASVENTTVPDL 180
             ++ DTTKKPEV DGKTDDLVVP AASI+NS+TPE+  SEETI I ESASVENT +PD+
Sbjct: 121 DDESVDTTKKPEVLDGKTDDLVVPTAASILNSITPELSTSEETISIAESASVENTAIPDM 180

Query: 181 IASKKLETVP-SRANEVTYVPVTATRDISSKP-EDGNLHLSAHI--TESPESFNPESEDQ 240
           I SKKLET P   A+ VT V + A RD+SSKP ED NLH+SAH+  +ES E+   ESEDQ
Sbjct: 181 IVSKKLETTPFQSADGVTNVSMAAPRDLSSKPNEDRNLHVSAHVANSESAENSKTESEDQ 240

Query: 241 PLIEPRPPVPQRTSWLSCCGLCDIITGSNR 261
           PLI  RPPVPQR+SWLSCCGLCD+ T S+R
Sbjct: 241 PLIGSRPPVPQRSSWLSCCGLCDVFTSSDR 264

[Close]

BLAST of Sed0023686.1 vs. ExPASy TrEMBL
Match: A0A1S3AZC5 (uncharacterized protein LOC103484406 OS=Cucumis melo OX=3656 GN=LOC103484406 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 1.3e-68
Identity = 171/270 (63.33%), Postives = 201/270 (74.44%), Query Frame = 0


Query: 1   MPSGAKKRKAAKKKKQLQGGSQINPSSSTSQGNEDVKNQDDKGSDNGEIDSPTSQNHVSD 60
           MPSGAKKRKAAKKKK+L+  + INP    +QGNE+ KNQDDKGSD+GEIDSP SQNH S 
Sbjct: 1   MPSGAKKRKAAKKKKELE--AHINP----AQGNENAKNQDDKGSDSGEIDSPASQNHPSH 60

Query: 61  SHPFGEVDKEIQASSVLNSAGASNVETNQKVKGSHD------GDHSTSTSTSTSTSSSSS 120
           S+PFGE +KEIQ SS  ++   SNV T+QKVK S +       + S   S     SSSSS
Sbjct: 61  SNPFGEGNKEIQESSSSDAGVPSNVGTDQKVKLSSERKNGNVENESVKGSRDDDHSSSSS 120

Query: 121 SSDAEDTTKKPEVPDGKTDDLVVPIAASIVNSVTPEVLASEETIDIVESASVENTTVPDL 180
             ++ DTTKKPEV DGKTDDLVVP AASI+NS+TPE+ ASEETI I ESASVENT +PD+
Sbjct: 121 DDESVDTTKKPEVLDGKTDDLVVPTAASILNSITPELSASEETISIAESASVENTAIPDM 180

Query: 181 IASKKLETVP-SRANEVTYVPVTATRDISSKP-EDGNLHLSAHI--TESPESFNPESEDQ 240
             SKKLET P   A+ VT V + A RD+SSKP ED NLH+SAH+  +ES E+   ESEDQ
Sbjct: 181 TVSKKLETTPFQSADGVTNVSMAAPRDLSSKPNEDRNLHVSAHVANSESAENSKTESEDQ 240

Query: 241 PLIEPRPPVPQRTSWLSCCGLCDIITGSNR 261
           PLI  RPPVPQR+SWLSCCGLCD+ T S+R
Sbjct: 241 PLIGSRPPVPQRSSWLSCCGLCDVFTSSDR 264

[Close]

BLAST of Sed0023686.1 vs. ExPASy TrEMBL
Match: A0A6J1ECK7 (nucleolin 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433088 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.1e-59
Identity = 157/262 (59.92%), Postives = 188/262 (71.76%), Query Frame = 0


Query: 1   MPSGAKKRKAAKKKKQLQGGSQINPSSSTSQGNEDVKNQDDKGSDNGEIDSPTSQNHVSD 60
           MPSGAKKRKAAKKKK+L+  + INPSS  SQGNEDVKN+ DKGSD+GE++SP S+N  S 
Sbjct: 1   MPSGAKKRKAAKKKKELE--AHINPSSIASQGNEDVKNRSDKGSDSGEVESPASENQPSH 60

Query: 61  SHPFGEVDKEIQASSVLNSAGASNVETNQKVKGSHDGDHSTSTSTSTSTSSSSSSSDAED 120
           S+PFG+ +KE++ SS      +SN  TNQK+  + +    T   T  + SSSSS  ++ D
Sbjct: 61  SNPFGKGNKEVEESS------SSNSGTNQKLGLASE----TKNGTLQNHSSSSSDDESVD 120

Query: 121 TTKKPEVPDGKTDDLVVPIAASIVNSVTPEVLASEETIDIVESASVENTTVPDLIASKKL 180
           TTK+PEV D K    + P AASIVNSVTPEV ASEETI +VESASVENT +PD+I S+KL
Sbjct: 121 TTKEPEVLDEK----IAPTAASIVNSVTPEVSASEETIGVVESASVENTAIPDMITSEKL 180

Query: 181 ETVPSRANEVTYVPVTATRDISSKP-EDGNLHLSAHI--TESPESFNPESEDQPLIEPRP 240
                         +TA RD SSKP ED NLHLSAH   +ES E+FNPESEDQPLI  RP
Sbjct: 181 S-------------LTAPRDPSSKPNEDRNLHLSAHSKGSESAENFNPESEDQPLIVSRP 233

Query: 241 PVPQRTSWLSCCGLCDIITGSN 260
           PVP+RTSWLSCCGLCD+ T SN
Sbjct: 241 PVPRRTSWLSCCGLCDVFTSSN 233

[Close]

BLAST of Sed0023686.1 vs. TAIR 10
Match: AT1G29530.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34310.3); Has 84 Blast hits to 78 proteins in 24 species: Archae - 2; Bacteria - 4; Metazoa - 9; Fungi - 8; Plants - 55; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-11
Identity = 91/264 (34.47%), Postives = 127/264 (48.11%), Query Frame = 0


Query: 1   MPSGAKKRKAAKKKKQLQG-GSQINPSSSTSQGNEDVKNQDDKGSDNGEIDSPTSQNHVS 60
           MPSGAKKRKA KKKKQ +  G+ IN       GN++  +QD +GSD+  + SP SQ    
Sbjct: 1   MPSGAKKRKALKKKKQQEAIGTSIN-------GNDEHGSQDGRGSDS-SLSSPGSQG--- 60

Query: 61  DSHPFGEVDKEIQASSVLNSAGASNVETNQKVKGSHDGDHSTSTSTSTSTSSSSSSSDAE 120
            +  FG  D     SS +    +  +  +  V           T  +    S++SSSD  
Sbjct: 61  -NQEFGTKDSSALLSSAVVKGASKEISRDAGVTQG----LGPKTGNAIVEKSTNSSSD-N 120

Query: 121 DTTKKPEVPDGKTDDLVVPIAASIVNSVTPEVLASEETIDIVESASVENTTVPDLI---A 180
            T     V  G +   + P    +V+SV P V++  +T+   +S  VE +T  +L+   +
Sbjct: 121 RTRPAKNVACGNSVTEITP----VVDSVKP-VVSISKTVTSEKSGLVETSTHSNLVKKKS 180

Query: 181 SKKLETVPSRANEVTYVPVTATRDISSKPEDGNLHLSAHITESPESFNPESEDQPLIEPR 240
            K  E  PS   E     V       S PE      S   +E P S     E++PL+ P 
Sbjct: 181 EKDEEYHPSPVLENNNSKVVMLP--RSAPETSKKVESVRKSEVPVS----PEEKPLLLPG 236

Query: 241 PPVPQRTSWLSCCGLCDIITGSNR 261
           PPV +RTSWLSCCGL D +TGS+R
Sbjct: 241 PPVVRRTSWLSCCGLFDAMTGSDR 236

[Close]

BLAST of Sed0023686.1 vs. TAIR 10
Match: AT4G18070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 8.1e-10
Identity = 91/301 (30.23%), Postives = 126/301 (41.86%), Query Frame = 0


Query: 1   MPSGAKKRKAAKKK----KQLQGGSQINPSSSTSQGNEDVKNQDDKGSDNGEIDSPTSQN 60
           MPSGAKKRKAAKKK    +Q QG S +    +    N D ++Q DK SD+G         
Sbjct: 1   MPSGAKKRKAAKKKQEEEQQQQGSSTL---INLKSNNHDSRSQGDKESDDG--------- 60

Query: 61  HVSDSHPFGEVDKEIQASSVLNSAGASNVETNQKVKGSHDGDHSTSTSTSTSTSSSSSSS 120
                     V++ I+ +                   SHD D S+S+S+S+S+SSSSSSS
Sbjct: 61  ----------VNERIEITD-----------------SSHDHDKSSSSSSSSSSSSSSSSS 120

Query: 121 DAEDTTKKPEVPDGKT-DDLVVPIAASIVNSVTPEVLASEETIDIVESASVENTTVPD-- 180
           D E    K    D KT DD+   I  S V      + A    +    +A VENT + D  
Sbjct: 121 DDESREVKKIDDDKKTGDDVSEVITVSSVPIQPVPIAADAPFMGFTANAIVENTGLMDSA 180

Query: 181 ---------LIASKKLETVPSRANEVTYVP--------VTATRDISSKPEDGNLHLSAHI 240
                    L+    ++T+ S   +   +P        V    D   +   G        
Sbjct: 181 VPNDPESGELVEISHVDTIVSNEADDNSLPKATEIAAEVALAFDEIRQTSSGATDSDVKE 240

Query: 241 TESPESFNPES-----------------EDQPLIEPRPPVPQRTSWLSCCGLCDIITGSN 261
            E   S  PES                 E+ P++ P   + +RTSW SCCGL D++TGS+
Sbjct: 241 NEGKTSPLPESNGVPEGNIESNVVISHEEEAPILIPTHGIAKRTSWFSCCGLFDVVTGSS 262

[Close]

BLAST of Sed0023686.1 vs. TAIR 10
Match: AT4G18070.3 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 8.1e-10
Identity = 91/301 (30.23%), Postives = 126/301 (41.86%), Query Frame = 0


Query: 1   MPSGAKKRKAAKKK----KQLQGGSQINPSSSTSQGNEDVKNQDDKGSDNGEIDSPTSQN 60
           MPSGAKKRKAAKKK    +Q QG S +    +    N D ++Q DK SD+G         
Sbjct: 1   MPSGAKKRKAAKKKQEEEQQQQGSSTL---INLKSNNHDSRSQGDKESDDG--------- 60

Query: 61  HVSDSHPFGEVDKEIQASSVLNSAGASNVETNQKVKGSHDGDHSTSTSTSTSTSSSSSSS 120
                     V++ I+ +                   SHD D S+S+S+S+S+SSSSSSS
Sbjct: 61  ----------VNERIEITD-----------------SSHDHDKSSSSSSSSSSSSSSSSS 120

Query: 121 DAEDTTKKPEVPDGKT-DDLVVPIAASIVNSVTPEVLASEETIDIVESASVENTTVPD-- 180
           D E    K    D KT DD+   I  S V      + A    +    +A VENT + D  
Sbjct: 121 DDESREVKKIDDDKKTGDDVSEVITVSSVPIQPVPIAADAPFMGFTANAIVENTGLMDSA 180

Query: 181 ---------LIASKKLETVPSRANEVTYVP--------VTATRDISSKPEDGNLHLSAHI 240
                    L+    ++T+ S   +   +P        V    D   +   G        
Sbjct: 181 VPNDPESGELVEISHVDTIVSNEADDNSLPKATEIAAEVALAFDEIRQTSSGATDSDVKE 240

Query: 241 TESPESFNPES-----------------EDQPLIEPRPPVPQRTSWLSCCGLCDIITGSN 261
            E   S  PES                 E+ P++ P   + +RTSW SCCGL D++TGS+
Sbjct: 241 NEGKTSPLPESNGVPEGNIESNVVISHEEEAPILIPTHGIAKRTSWFSCCGLFDVVTGSS 262

[Close]

BLAST of Sed0023686.1 vs. TAIR 10
Match: AT4G18070.4 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 8.1e-10
Identity = 91/301 (30.23%), Postives = 126/301 (41.86%), Query Frame = 0


Query: 1   MPSGAKKRKAAKKK----KQLQGGSQINPSSSTSQGNEDVKNQDDKGSDNGEIDSPTSQN 60
           MPSGAKKRKAAKKK    +Q QG S +    +    N D ++Q DK SD+G         
Sbjct: 1   MPSGAKKRKAAKKKQEEEQQQQGSSTL---INLKSNNHDSRSQGDKESDDG--------- 60

Query: 61  HVSDSHPFGEVDKEIQASSVLNSAGASNVETNQKVKGSHDGDHSTSTSTSTSTSSSSSSS 120
                     V++ I+ +                   SHD D S+S+S+S+S+SSSSSSS
Sbjct: 61  ----------VNERIEITD-----------------SSHDHDKSSSSSSSSSSSSSSSSS 120

Query: 121 DAEDTTKKPEVPDGKT-DDLVVPIAASIVNSVTPEVLASEETIDIVESASVENTTVPD-- 180
           D E    K    D KT DD+   I  S V      + A    +    +A VENT + D  
Sbjct: 121 DDESREVKKIDDDKKTGDDVSEVITVSSVPIQPVPIAADAPFMGFTANAIVENTGLMDSA 180

Query: 181 ---------LIASKKLETVPSRANEVTYVP--------VTATRDISSKPEDGNLHLSAHI 240
                    L+    ++T+ S   +   +P        V    D   +   G        
Sbjct: 181 VPNDPESGELVEISHVDTIVSNEADDNSLPKATEIAAEVALAFDEIRQTSSGATDSDVKE 240

Query: 241 TESPESFNPES-----------------EDQPLIEPRPPVPQRTSWLSCCGLCDIITGSN 261
            E   S  PES                 E+ P++ P   + +RTSW SCCGL D++TGS+
Sbjct: 241 NEGKTSPLPESNGVPEGNIESNVVISHEEEAPILIPTHGIAKRTSWFSCCGLFDVVTGSS 262

[Close]

BLAST of Sed0023686.1 vs. TAIR 10
Match: AT4G18070.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 3.8e-07
Identity = 63/204 (30.88%), Postives = 88/204 (43.14%), Query Frame = 0


Query: 94  SHDGDHSTSTSTSTSTSSSSSSSDAEDTTKKPEVPDGKT-DDLVVPIAASIVNSVTPEVL 153
           SHD D S+S+S+S+S+SSSSSSSD E    K    D KT DD+   I  S V      + 
Sbjct: 25  SHDHDKSSSSSSSSSSSSSSSSSDDESREVKKIDDDKKTGDDVSEVITVSSVPIQPVPIA 84

Query: 154 ASEETIDIVESASVENTTVPD-----------LIASKKLETVPSRANEVTYVP------- 213
           A    +    +A VENT + D           L+    ++T+ S   +   +P       
Sbjct: 85  ADAPFMGFTANAIVENTGLMDSAVPNDPESGELVEISHVDTIVSNEADDNSLPKATEIAA 144

Query: 214 -VTATRDISSKPEDGNLHLSAHITESPESFNPES-----------------EDQPLIEPR 261
            V    D   +   G         E   S  PES                 E+ P++ P 
Sbjct: 145 EVALAFDEIRQTSSGATDSDVKENEGKTSPLPESNGVPEGNIESNVVISHEEEAPILIPT 204

The following BLAST results are available for this feature:

BLAST of Sed0023686.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142230.1	2.7e-71	66.67	uncharacterized protein LOC111012397 [Momordica charantia]	[more]
XP_004134611.1	3.0e-70	64.81	uncharacterized protein LOC101202888 isoform X1 [Cucumis sativus]	[more]
XP_038882131.1	5.6e-69	63.77	uncharacterized protein LOC120073379 [Benincasa hispida]	[more]
TYK13245.1	2.1e-68	63.33	uncharacterized protein E5676_scaffold255G008630 [Cucumis melo var. makuwa]	[more]
XP_008439686.1	2.8e-68	63.33	PREDICTED: uncharacterized protein LOC103484406 [Cucumis melo]	[more]

BLAST of Sed0023686.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0023686.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CKC0	1.3e-71	66.67	uncharacterized protein LOC111012397 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A0A0KHZ9	1.4e-70	64.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G521020 PE=4 SV=1	[more]
A0A5D3CNT1	1.0e-68	63.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AZC5	1.3e-68	63.33	uncharacterized protein LOC103484406 OS=Cucumis melo OX=3656 GN=LOC103484406 PE=...	[more]
A0A6J1ECK7	1.1e-59	59.92	nucleolin 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433088 PE=4 S...	[more]

BLAST of Sed0023686.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29530.1	2.5e-11	34.47	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G18070.1	8.1e-10	30.23	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G18070.3	8.1e-10	30.23	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G18070.4	8.1e-10	30.23	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G18070.2	3.8e-07	30.88	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 200..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..133
None	No IPR available	PANTHER	PTHR37187	EXPRESSED PROTEIN	coord: 1..260

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0023686	Sed0023686	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0023686.1-cds	Sed0023686.1-cds-LG10:1056546..1056638	CDS
Sed0023686.1-cds	Sed0023686.1-cds-LG10:1056730..1056779	CDS
Sed0023686.1-cds	Sed0023686.1-cds-LG10:1056903..1057164	CDS
Sed0023686.1-cds	Sed0023686.1-cds-LG10:1057248..1057531	CDS
Sed0023686.1-cds	Sed0023686.1-cds-LG10:1058106..1058199	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0023686.1-exon	Sed0023686.1-exon-LG10:1056546..1056638	exon
Sed0023686.1-exon	Sed0023686.1-exon-LG10:1056730..1056779	exon
Sed0023686.1-exon	Sed0023686.1-exon-LG10:1056903..1057164	exon
Sed0023686.1-exon	Sed0023686.1-exon-LG10:1057248..1057531	exon
Sed0023686.1-exon	Sed0023686.1-exon-LG10:1058106..1058199	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0023686.1	Sed0023686.1-protein	polypeptide