Sed0022808.1 (mRNA) Chayote v1

Overview


Name	Sed0022808.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	RING-type domain-containing protein
Location	LG03: 4734671 .. 4735291 (+)
Sequence length	621
RNA-Seq Expression	Sed0022808.1
Synteny	Sed0022808.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACGGATTCTCTCTACGACTACCACATATGGCAACCTGAAGGAGATGAAGACGACGTCAACGTCACCATTTCCGATTCTCACTTGCTTCCCTGCGACTGTTTCCTTTTCCACCTTCACTTCCGCCATGTTCTGCACTCAAATCAACCTCAAGATTTGCAGAGACTCCTAAATTCCTCTCTATCTTCGTTCTTGATACCTTGCGATGCCTTTTTCGCCCTTGGCTCCAGTATCCTCATCGCGATTTTCTCCGGCACCGGCGTCGCTCAAGACTTCTTGGACGCGGCCGTGCCGGACGTTCTGTCTGTCGCGGCGGATGTAGCATGCAATCCGCTCAATCCTGGCCGTCGGATTCTCCCGTTGGCGATGTCCGTTTTAGTCGTTTCGCCGGAAGTGGTGAAGACGTCGCCGGCGAGTGAGGCGGCGATCGAAGGGCTGAGGACGGTGGAGATTGATGCTGTTGATGGGGGATGCAGGATATGCTTGGATGAACTGATGAAGGGAATGGAGGTTACGCGATTGCCGTGCGCTCATTTTTACCACAGGGATTGTATCGTGAAATGGCTTGAGACGAGTCATTTGTGCCCGTTGTGCCGCTACGCAATGCCGCTGAGCTGA

mRNA sequence

ATGGCGACGGATTCTCTCTACGACTACCACATATGGCAACCTGAAGGAGATGAAGACGACGTCAACGTCACCATTTCCGATTCTCACTTGCTTCCCTGCGACTGTTTCCTTTTCCACCTTCACTTCCGCCATGTTCTGCACTCAAATCAACCTCAAGATTTGCAGAGACTCCTAAATTCCTCTCTATCTTCGTTCTTGATACCTTGCGATGCCTTTTTCGCCCTTGGCTCCAGTATCCTCATCGCGATTTTCTCCGGCACCGGCGTCGCTCAAGACTTCTTGGACGCGGCCGTGCCGGACGTTCTGTCTGTCGCGGCGGATGTAGCATGCAATCCGCTCAATCCTGGCCGTCGGATTCTCCCGTTGGCGATGTCCGTTTTAGTCGTTTCGCCGGAAGTGGTGAAGACGTCGCCGGCGAGTGAGGCGGCGATCGAAGGGCTGAGGACGGTGGAGATTGATGCTGTTGATGGGGGATGCAGGATATGCTTGGATGAACTGATGAAGGGAATGGAGGTTACGCGATTGCCGTGCGCTCATTTTTACCACAGGGATTGTATCGTGAAATGGCTTGAGACGAGTCATTTGTGCCCGTTGTGCCGCTACGCAATGCCGCTGAGCTGA

Coding sequence (CDS)

ATGGCGACGGATTCTCTCTACGACTACCACATATGGCAACCTGAAGGAGATGAAGACGACGTCAACGTCACCATTTCCGATTCTCACTTGCTTCCCTGCGACTGTTTCCTTTTCCACCTTCACTTCCGCCATGTTCTGCACTCAAATCAACCTCAAGATTTGCAGAGACTCCTAAATTCCTCTCTATCTTCGTTCTTGATACCTTGCGATGCCTTTTTCGCCCTTGGCTCCAGTATCCTCATCGCGATTTTCTCCGGCACCGGCGTCGCTCAAGACTTCTTGGACGCGGCCGTGCCGGACGTTCTGTCTGTCGCGGCGGATGTAGCATGCAATCCGCTCAATCCTGGCCGTCGGATTCTCCCGTTGGCGATGTCCGTTTTAGTCGTTTCGCCGGAAGTGGTGAAGACGTCGCCGGCGAGTGAGGCGGCGATCGAAGGGCTGAGGACGGTGGAGATTGATGCTGTTGATGGGGGATGCAGGATATGCTTGGATGAACTGATGAAGGGAATGGAGGTTACGCGATTGCCGTGCGCTCATTTTTACCACAGGGATTGTATCGTGAAATGGCTTGAGACGAGTCATTTGTGCCCGTTGTGCCGCTACGCAATGCCGCTGAGCTGA

Protein sequence

MATDSLYDYHIWQPEGDEDDVNVTISDSHLLPCDCFLFHLHFRHVLHSNQPQDLQRLLNSSLSSFLIPCDAFFALGSSILIAIFSGTGVAQDFLDAAVPDVLSVAADVACNPLNPGRRILPLAMSVLVVSPEVVKTSPASEAAIEGLRTVEIDAVDGGCRICLDELMKGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS

Homology

[Close]

BLAST of Sed0022808.1 vs. NCBI nr
Match: KAG6602099.1 (E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032803.1 E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 352.8 bits (904), Expect = 2.0e-93
Identity = 178/226 (78.76%), Postives = 189/226 (83.63%), Query Frame = 0


Query: 1   MATDSLYDYHIWQPEGDEDDVNVTISDSHLLPCDCFLFHLHFRHVLHSNQPQDLQRLLNS 60
           MA D+LYDY IWQPE  EDDVNVTIS+SHLLPCDCFLFHLHFRHVL SN PQ+LQRLLNS
Sbjct: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNNPQELQRLLNS 60

Query: 61  SLSSFLIPCDAFFALGSSILIAIFSGTGVAQDFLDAAVPDVLSVAADVACNPLNPGRRIL 120
           SLSSFLIPCDAFFA G SILIA+FS TGVAQDFLDAAVPDVLSVAAD+ACNPLN GRR+L
Sbjct: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120

Query: 121 PLAMSVLVV----------------SPEVVKTSPASEAAIEGLRTVEIDA----VDGGCR 180
           PLA+SVL V                SP+  KTSPASE+AIEGL+TVEID     + G CR
Sbjct: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR 180

Query: 181 ICLDELMKGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 207
           ICLDELM GMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of Sed0022808.1 vs. NCBI nr
Match: XP_023554199.1 (probable E3 ubiquitin-protein ligase ATL45 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 352.4 bits (903), Expect = 2.6e-93
Identity = 177/226 (78.32%), Postives = 189/226 (83.63%), Query Frame = 0


Query: 1   MATDSLYDYHIWQPEGDEDDVNVTISDSHLLPCDCFLFHLHFRHVLHSNQPQDLQRLLNS 60
           MA D+LYDY IWQPE  EDD+NVTIS+SHLLPCDCFLFHLHFRHVL SN PQ+LQRLLNS
Sbjct: 1   MAMDTLYDYQIWQPEEHEDDINVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNS 60

Query: 61  SLSSFLIPCDAFFALGSSILIAIFSGTGVAQDFLDAAVPDVLSVAADVACNPLNPGRRIL 120
           SLSSFLIPCDAFFA G SILIA+FS TGVAQDFLDAAVPDVLSVAAD+ACNPLN GRR+L
Sbjct: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120

Query: 121 PLAMSVLVV----------------SPEVVKTSPASEAAIEGLRTVEIDA----VDGGCR 180
           PLA+SVL V                SP+  KTSPASE+AIEGL+TVEID     + G CR
Sbjct: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR 180

Query: 181 ICLDELMKGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 207
           ICLDELM GMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of Sed0022808.1 vs. NCBI nr
Match: XP_022963379.1 (probable E3 ubiquitin-protein ligase ATL45 [Cucurbita moschata] >XP_022963389.1 probable E3 ubiquitin-protein ligase ATL45 [Cucurbita moschata])

HSP 1 Score: 352.1 bits (902), Expect = 3.4e-93
Identity = 178/226 (78.76%), Postives = 189/226 (83.63%), Query Frame = 0


Query: 1   MATDSLYDYHIWQPEGDEDDVNVTISDSHLLPCDCFLFHLHFRHVLHSNQPQDLQRLLNS 60
           MA D+LYDY IWQPE  EDDVNVTIS+SHLLPCDCFLFHLHFRHVL SN PQ+LQRLLNS
Sbjct: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNS 60

Query: 61  SLSSFLIPCDAFFALGSSILIAIFSGTGVAQDFLDAAVPDVLSVAADVACNPLNPGRRIL 120
           SLSSFLIPCDAFFA G SILIA+FS TGVAQDFLDAAVPDVLSVAAD+ACNPLN GRR+L
Sbjct: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120

Query: 121 PLAMSVLVV----------------SPEVVKTSPASEAAIEGLRTVEIDA----VDGGCR 180
           PLA+SVL V                SP+  KTSPASE+AIEGL+TVEID     + G CR
Sbjct: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQEFKTSPASESAIEGLKTVEIDVGGELLIGECR 180

Query: 181 ICLDELMKGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 207
           ICLDELM GMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of Sed0022808.1 vs. NCBI nr
Match: XP_022990569.1 (probable E3 ubiquitin-protein ligase ATL45 [Cucurbita maxima] >XP_022990570.1 probable E3 ubiquitin-protein ligase ATL45 [Cucurbita maxima])

HSP 1 Score: 350.5 bits (898), Expect = 9.8e-93
Identity = 177/226 (78.32%), Postives = 188/226 (83.19%), Query Frame = 0


Query: 1   MATDSLYDYHIWQPEGDEDDVNVTISDSHLLPCDCFLFHLHFRHVLHSNQPQDLQRLLNS 60
           MA D+LYDY IWQPE  EDDVNVTIS+SHLLPCDCFLFHLHFRHVL SN PQ+LQRLLNS
Sbjct: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNS 60

Query: 61  SLSSFLIPCDAFFALGSSILIAIFSGTGVAQDFLDAAVPDVLSVAADVACNPLNPGRRIL 120
           SLSSFLIPCDAFFA G SILIA+FS TGVAQDFLDAAVPDVLSVAAD+ACNPLN GRR+L
Sbjct: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120

Query: 121 PLAMSVLVV----------------SPEVVKTSPASEAAIEGLRTVEIDA----VDGGCR 180
           PLA+SVL V                SP+  KTSPASE+AIEGL+TVEID     + G CR
Sbjct: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR 180

Query: 181 ICLDELMKGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 207
           ICLDELM GMEVTRLPCAH YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of Sed0022808.1 vs. NCBI nr
Match: XP_004150446.1 (E3 ubiquitin-protein ligase RING1 [Cucumis sativus] >KGN47723.1 hypothetical protein Csa_018280 [Cucumis sativus])

HSP 1 Score: 334.3 bits (856), Expect = 7.2e-88
Identity = 169/226 (74.78%), Postives = 180/226 (79.65%), Query Frame = 0


Query: 1   MATDSLYDYHIWQPEGDEDDVNVTISDSHLLPCDCFLFHLHFRHVLHSNQPQDLQRLLNS 60
           MA D+LYDYHIWQPE  EDD+NVTIS+SHLLPC+CFLFHLHFRH+L SN  Q    LLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60

Query: 61  SLSSFLIPCDAFFALGSSILIAIFSGTGVAQDFLDAAVPDVLSVAADVACNPLNPGRRIL 120
           SLSSFLIPCD FFA  SSILIA+FSGTGVAQDFLD AVPDVLSVAAD+ACNPLN GR IL
Sbjct: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAMSVLVV----------------SPEVVKTSPASEAAIEGLRTVEIDA----VDGGCR 180
           PLA+SVLVV                SP+  KT PASE AIEGL+ VEID     + G CR
Sbjct: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR 180

Query: 181 ICLDELMKGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 207
           ICLDELM GMEVTRLPCAH YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of Sed0022808.1 vs. ExPASy Swiss-Prot
Match: Q9LQX2 (E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.0e-12
Identity = 41/105 (39.05%), Postives = 54/105 (51.43%), Query Frame = 0


Query: 108 VACNPLNPGRRIL-------PLAMSVLVVSPEVVKTSPASEAAIEGLRTVEIDAVDGGCR 167
           +  NP   G  +L       PL  S+L    E     PAS+A+I+ +  VEID  +G C 
Sbjct: 57  ILVNPFTQGMIVLEGSSGMNPLLRSLLESREE--GRPPASKASIDAMPIVEIDGCEGECV 116

Query: 168 ICLDELMKGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPL 206
           ICL+E      V  +PC H +H  CI KWL     CP+CRY MP+
Sbjct: 117 ICLEEWKSEETVKEMPCKHRFHGGCIEKWLGFHGSCPVCRYEMPV 159

[Close]

BLAST of Sed0022808.1 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.0e-12
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 131 PEVVKTSPASEAAIEGLRTVEI-----DAVDGGCRICLDELMKGMEVTRLPCAHFYHRDC 190
           P    T PAS++AIE L  V I     ++    C +C+D+  +G E  ++PC H YH+DC
Sbjct: 191 PNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDC 250

Query: 191 IVKWLETSHLCPLCRYAMP 205
           ++ WLE  + CP+CR+ +P
Sbjct: 251 LLPWLELHNSCPVCRHELP 269

[Close]

BLAST of Sed0022808.1 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.1e-12
Identity = 30/79 (37.97%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 131 PEVVKTSPASEAAIEGLRTVEI-----DAVDGGCRICLDELMKGMEVTRLPCAHFYHRDC 190
           P    T PAS++AI+ L TV++      +    C +C+DE   G +V ++PC H +H+DC
Sbjct: 183 PNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDC 242

Query: 191 IVKWLETSHLCPLCRYAMP 205
           ++ WLE  + CP+CR+ +P
Sbjct: 243 LLPWLELHNSCPVCRFELP 261

[Close]

BLAST of Sed0022808.1 vs. ExPASy Swiss-Prot
Match: Q6AVN2 (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.8e-12
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 136 TSPASEAAIEGLRTVEIDAVDGGCRICLDELMKGMEVTRLPCAHFYHRDCIVKWLETSHL 195
           T PA + A+E L TV+I+ V   C +CLD+L  G +  ++PC H +H  CI+ WLE    
Sbjct: 177 TPPAKKEAVEALPTVKIEEV-VSCSVCLDDLEVGSQAKQMPCEHKFHSSCILPWLELHSS 236

Query: 196 CPLCRYAMP 205
           CP+CR+ +P
Sbjct: 237 CPVCRFELP 244

[Close]

BLAST of Sed0022808.1 vs. ExPASy Swiss-Prot
Match: Q9SPL2 (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.6e-11
Identity = 30/70 (42.86%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 138 PASEAAIEGLRTVEIDAVDGG----CRICLDELMKGMEVTRLPCAHFYHRDCIVKWLETS 197
           PA+++AIE L T E+ + +G     C +C D ++ G    +LPC H YH DCIV WL T 
Sbjct: 232 PAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTR 291

Query: 198 HLCPLCRYAM 204
           + CP+CR+ +
Sbjct: 292 NSCPVCRFQL 301

[Close]

BLAST of Sed0022808.1 vs. ExPASy TrEMBL
Match: A0A6J1HJY0 (probable E3 ubiquitin-protein ligase ATL45 OS=Cucurbita moschata OX=3662 GN=LOC111463602 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.6e-93
Identity = 178/226 (78.76%), Postives = 189/226 (83.63%), Query Frame = 0


Query: 1   MATDSLYDYHIWQPEGDEDDVNVTISDSHLLPCDCFLFHLHFRHVLHSNQPQDLQRLLNS 60
           MA D+LYDY IWQPE  EDDVNVTIS+SHLLPCDCFLFHLHFRHVL SN PQ+LQRLLNS
Sbjct: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNS 60

Query: 61  SLSSFLIPCDAFFALGSSILIAIFSGTGVAQDFLDAAVPDVLSVAADVACNPLNPGRRIL 120
           SLSSFLIPCDAFFA G SILIA+FS TGVAQDFLDAAVPDVLSVAAD+ACNPLN GRR+L
Sbjct: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120

Query: 121 PLAMSVLVV----------------SPEVVKTSPASEAAIEGLRTVEIDA----VDGGCR 180
           PLA+SVL V                SP+  KTSPASE+AIEGL+TVEID     + G CR
Sbjct: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQEFKTSPASESAIEGLKTVEIDVGGELLIGECR 180

Query: 181 ICLDELMKGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 207
           ICLDELM GMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of Sed0022808.1 vs. ExPASy TrEMBL
Match: A0A6J1JSE1 (probable E3 ubiquitin-protein ligase ATL45 OS=Cucurbita maxima OX=3661 GN=LOC111487409 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.7e-93
Identity = 177/226 (78.32%), Postives = 188/226 (83.19%), Query Frame = 0


Query: 1   MATDSLYDYHIWQPEGDEDDVNVTISDSHLLPCDCFLFHLHFRHVLHSNQPQDLQRLLNS 60
           MA D+LYDY IWQPE  EDDVNVTIS+SHLLPCDCFLFHLHFRHVL SN PQ+LQRLLNS
Sbjct: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNS 60

Query: 61  SLSSFLIPCDAFFALGSSILIAIFSGTGVAQDFLDAAVPDVLSVAADVACNPLNPGRRIL 120
           SLSSFLIPCDAFFA G SILIA+FS TGVAQDFLDAAVPDVLSVAAD+ACNPLN GRR+L
Sbjct: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120

Query: 121 PLAMSVLVV----------------SPEVVKTSPASEAAIEGLRTVEIDA----VDGGCR 180
           PLA+SVL V                SP+  KTSPASE+AIEGL+TVEID     + G CR
Sbjct: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR 180

Query: 181 ICLDELMKGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 207
           ICLDELM GMEVTRLPCAH YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of Sed0022808.1 vs. ExPASy TrEMBL
Match: A0A0A0KDU3 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G385070 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.5e-88
Identity = 169/226 (74.78%), Postives = 180/226 (79.65%), Query Frame = 0


Query: 1   MATDSLYDYHIWQPEGDEDDVNVTISDSHLLPCDCFLFHLHFRHVLHSNQPQDLQRLLNS 60
           MA D+LYDYHIWQPE  EDD+NVTIS+SHLLPC+CFLFHLHFRH+L SN  Q    LLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60

Query: 61  SLSSFLIPCDAFFALGSSILIAIFSGTGVAQDFLDAAVPDVLSVAADVACNPLNPGRRIL 120
           SLSSFLIPCD FFA  SSILIA+FSGTGVAQDFLD AVPDVLSVAAD+ACNPLN GR IL
Sbjct: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAMSVLVV----------------SPEVVKTSPASEAAIEGLRTVEIDA----VDGGCR 180
           PLA+SVLVV                SP+  KT PASE AIEGL+ VEID     + G CR
Sbjct: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR 180

Query: 181 ICLDELMKGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 207
           ICLDELM GMEVTRLPCAH YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of Sed0022808.1 vs. ExPASy TrEMBL
Match: A0A6J1CJQ8 (E3 ubiquitin-protein ligase RING1-like OS=Momordica charantia OX=3673 GN=LOC111011930 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 3.0e-87
Identity = 166/226 (73.45%), Postives = 185/226 (81.86%), Query Frame = 0


Query: 1   MATDSLYDYHIWQPEGDEDDVNVTISDSHLLPCDCFLFHLHFRHVLHSNQPQDLQR-LLN 60
           MA D+LYDYH+WQP  DE+  NVTIS+SHLLPCDCFL HLHFRHVLHSN PQ+    LLN
Sbjct: 1   MAMDTLYDYHVWQPHEDEEHDNVTISNSHLLPCDCFLLHLHFRHVLHSNSPQESSHTLLN 60

Query: 61  SSLSSFLIPCDAFFALGSSILIAIFSGTGVAQDFLDAAVPDVLSVAADVACNPLNPGRRI 120
           SSLSSFLIPCDAFFA  S+ILIA+FSGTGVAQDFLDAA+PDVLSVAAD+ACNPLN GRR+
Sbjct: 61  SSLSSFLIPCDAFFARASTILIAVFSGTGVAQDFLDAAIPDVLSVAADIACNPLNAGRRM 120

Query: 121 LPLAMSVLVVSP---------------EVVKTSPASEAAIEGLRTVEIDA----VDGGCR 180
           LPLA+SVLVVSP               +  KT PASE++IE L+TV+IDA    + G CR
Sbjct: 121 LPLAVSVLVVSPHDEREEIGRISRESAQAFKTCPASESSIEALKTVKIDAGRELLIGECR 180

Query: 181 ICLDELMKGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 207
           ICLDELM GMEVTRLPC+H YHRDCIVKWLETSHLCPLCRYA+PLS
Sbjct: 181 ICLDELMSGMEVTRLPCSHVYHRDCIVKWLETSHLCPLCRYALPLS 226

[Close]

BLAST of Sed0022808.1 vs. ExPASy TrEMBL
Match: A0A5A7V2F0 (E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001370 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.8e-85
Identity = 163/226 (72.12%), Postives = 178/226 (78.76%), Query Frame = 0


Query: 1   MATDSLYDYHIWQPEGDEDDVNVTISDSHLLPCDCFLFHLHFRHVLHSNQPQDLQRLLNS 60
           MA D+LYDYHIWQPE  EDD+NVTIS+SHLLPC+CFLFHLHFRH+L SN  Q    LLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQSHYLLNS 60

Query: 61  SLSSFLIPCDAFFALGSSILIAIFSGTGVAQDFLDAAVPDVLSVAADVACNPLNPGRRIL 120
           SLSS+LIPCD FFA  SSILIA+FSGTGVAQDFLD AVPDVLSVAAD+ACNPLN GR IL
Sbjct: 61  SLSSYLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAMSVLVV----------------SPEVVKTSPASEAAIEGLRTVEI----DAVDGGCR 180
           PL +SVLVV                SP+  KT PASE AIE L+ VEI    + + G CR
Sbjct: 121 PLTVSVLVVSPYNERQEIGQVLRESSPQAFKTLPASEMAIEDLKNVEIGVGGELLIGECR 180

Query: 181 ICLDELMKGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 207
           ICLDEL+ GME+TRLPCAH YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELVNGMEITRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of Sed0022808.1 vs. TAIR 10
Match: AT3G13430.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-13
Identity = 30/69 (43.48%), Postives = 43/69 (62.32%), Query Frame = 0


Query: 136 TSPASEAAIEGLRTVEIDAVDGGCRICLDELMKGMEVTRLPCAHFYHRDCIVKWLETSHL 195
           T PA++ A+E L  V+I+     C +CLD+   GME   +PC H +H DC++ WLE    
Sbjct: 202 TPPATKEAVEALAMVKIEDSLLQCSVCLDDFEIGMEAKEMPCKHKFHSDCLLPWLELHSS 261

Query: 196 CPLCRYAMP 205
           CP+CRY +P
Sbjct: 262 CPVCRYLLP 270

[Close]

BLAST of Sed0022808.1 vs. TAIR 10
Match: AT3G13430.2 (RING/U-box superfamily protein )

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-13
Identity = 30/69 (43.48%), Postives = 43/69 (62.32%), Query Frame = 0


Query: 136 TSPASEAAIEGLRTVEIDAVDGGCRICLDELMKGMEVTRLPCAHFYHRDCIVKWLETSHL 195
           T PA++ A+E L  V+I+     C +CLD+   GME   +PC H +H DC++ WLE    
Sbjct: 202 TPPATKEAVEALAMVKIEDSLLQCSVCLDDFEIGMEAKEMPCKHKFHSDCLLPWLELHSS 261

Query: 196 CPLCRYAMP 205
           CP+CRY +P
Sbjct: 262 CPVCRYLLP 270

[Close]

BLAST of Sed0022808.1 vs. TAIR 10
Match: AT3G13430.3 (RING/U-box superfamily protein )

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-13
Identity = 30/69 (43.48%), Postives = 43/69 (62.32%), Query Frame = 0


Query: 136 TSPASEAAIEGLRTVEIDAVDGGCRICLDELMKGMEVTRLPCAHFYHRDCIVKWLETSHL 195
           T PA++ A+E L  V+I+     C +CLD+   GME   +PC H +H DC++ WLE    
Sbjct: 202 TPPATKEAVEALAMVKIEDSLLQCSVCLDDFEIGMEAKEMPCKHKFHSDCLLPWLELHSS 261

Query: 196 CPLCRYAMP 205
           CP+CRY +P
Sbjct: 262 CPVCRYLLP 270

[Close]

BLAST of Sed0022808.1 vs. TAIR 10
Match: AT1G26800.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 2.1e-13
Identity = 41/105 (39.05%), Postives = 54/105 (51.43%), Query Frame = 0


Query: 108 VACNPLNPGRRIL-------PLAMSVLVVSPEVVKTSPASEAAIEGLRTVEIDAVDGGCR 167
           +  NP   G  +L       PL  S+L    E     PAS+A+I+ +  VEID  +G C 
Sbjct: 57  ILVNPFTQGMIVLEGSSGMNPLLRSLLESREE--GRPPASKASIDAMPIVEIDGCEGECV 116

Query: 168 ICLDELMKGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPL 206
           ICL+E      V  +PC H +H  CI KWL     CP+CRY MP+
Sbjct: 117 ICLEEWKSEETVKEMPCKHRFHGGCIEKWLGFHGSCPVCRYEMPV 159

[Close]

BLAST of Sed0022808.1 vs. TAIR 10
Match: AT3G02340.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.8 bits (177), Expect = 3.7e-13
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 138 PASEAAIEGLRTVE--IDAVDGG---CRICLDELMKGMEVTRLPCAHFYHRDCIVKWLET 197
           PA+++ I+ L  VE  ++ +D G   C +C DE++   +V RLPC+HFYH +CI+ WL  
Sbjct: 309 PAAKSVIQDLPVVELAVEELDKGNNVCAVCKDEMLVEEKVRRLPCSHFYHGECIIPWLGI 368

Query: 198 SHLCPLCRYAMP 205
            + CP+CRY +P
Sbjct: 369 RNTCPVCRYELP 380

The following BLAST results are available for this feature:

BLAST of Sed0022808.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602099.1	2.0e-93	78.76	E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023554199.1	2.6e-93	78.32	probable E3 ubiquitin-protein ligase ATL45 [Cucurbita pepo subsp. pepo]	[more]
XP_022963379.1	3.4e-93	78.76	probable E3 ubiquitin-protein ligase ATL45 [Cucurbita moschata] >XP_022963389.1 ...	[more]
XP_022990569.1	9.8e-93	78.32	probable E3 ubiquitin-protein ligase ATL45 [Cucurbita maxima] >XP_022990570.1 pr...	[more]
XP_004150446.1	7.2e-88	74.78	E3 ubiquitin-protein ligase RING1 [Cucumis sativus] >KGN47723.1 hypothetical pro...	[more]

BLAST of Sed0022808.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQX2	3.0e-12	39.05	E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 ...	[more]
P0CH30	3.0e-12	39.24	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
Q8LPN7	5.1e-12	37.97	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q6AVN2	8.8e-12	43.48	E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SI...	[more]
Q9SPL2	2.6e-11	42.86	E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV...	[more]

BLAST of Sed0022808.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJY0	1.6e-93	78.76	probable E3 ubiquitin-protein ligase ATL45 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1JSE1	4.7e-93	78.32	probable E3 ubiquitin-protein ligase ATL45 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A0A0KDU3	3.5e-88	74.78	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G385070 P...	[more]
A0A6J1CJQ8	3.0e-87	73.45	E3 ubiquitin-protein ligase RING1-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A5A7V2F0	2.8e-85	72.12	E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of Sed0022808.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13430.1	1.6e-13	43.48	RING/U-box superfamily protein	[more]
AT3G13430.2	1.6e-13	43.48	RING/U-box superfamily protein	[more]
AT3G13430.3	1.6e-13	43.48	RING/U-box superfamily protein	[more]
AT1G26800.1	2.1e-13	39.05	RING/U-box superfamily protein	[more]
AT3G02340.1	3.7e-13	43.06	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 158..200 e-value: 0.0038 score: 10.8
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 159..199 e-value: 6.6E-7 score: 38.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 159..200 e-value: 2.3E-13 score: 50.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 159..200 score: 12.710573
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 129..205 e-value: 2.0E-19 score: 71.0
None	No IPR available	PANTHER	PTHR15710:SF120	F6A14.12 PROTEIN-RELATED	coord: 136..204
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 136..204
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 155..204

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0022808	Sed0022808	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022808.1-exon	Sed0022808.1-exon-LG03:4734671..4735291	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022808.1-cds	Sed0022808.1-cds-LG03:4734671..4735291	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0022808.1	Sed0022808.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0061630	ubiquitin protein ligase activity