Sed0022553.1 (mRNA) Chayote v1

Overview


Name	Sed0022553.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Nucleolar protein 16
Location	LG09: 36595610 .. 36597901 (+)
Sequence length	1048
RNA-Seq Expression	Sed0022553.1
Synteny	Sed0022553.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAGATTGGTTTTCTAAACCACCAAACCGATAAATCCAAATCTTCTTCTTCTAAACCCTAGCCACCAATTTCGCCCATCTCGTTCAATTTGCAGAGCCGCCATGGGAAGATCTCGAAGAAAGTACCAGAGATCTAGGGCAAAGGTCAAGGTCGGCCTCCCCAAACGCCACCCCAATGTCTTCAAGCCATCCTTCTGTATGCCGCCGAAGCTCCGCGCATTGCTCGCCGACCAATTCGAGGAAGATCCATCATGGGACGACAAAGCCAGTGTCATTCACAACTACAAGTCCTTTGGTGTTCTTTCTAACCCTAATTTGCTCAGCGTTCGGTCCCGGACTAATCACATCGTTGAGAGCGACTCTCTTCAGGTCCCGCCGTCTCTGCCGCCTTCCGATGAGCCTGATTCCTTGCTTGATTCTTCCGGCAGCGATGTGGAAGAGGACGGTGAGTTTGATTCTGTTCTGTTGGTACTCCGTTATGAATCTCTTTCGGTTTTGTGGAATTTTTGGATTTGGTGTGAGTGAGATGGTTTGATGGTTGATGATGTGATAGTTTTCAAATTTCTATGTGTATTTGTTTGTCTTGTCATCGAGGGGTGGCACAATGGTCGAAGACTTAGGCTTTGAAGGTGAGTCTCTAGTTTGAGATTTACCTGTGATATTACTCCTTCCATGTCTCCCAGTGTCTGGCTCAGGAACAGGCGTGGTTACCCTTGTTTAAAAAAAAAGTACATTTGTTTGGCTGAAATCAGTTGGCTTTATGAAATTTGATGTCTTCTGCCTCAGCTTTAGTGAATAATCACTTAGGATAGTTTATGCAACTCTGTTGATTGTTGATGTTATTTACTTGGAAGGATTCGAGGCTTAGCAAAGGCCTGAAATTTCTGAATAGCTCTTATAAATGACAATTTTACCCTAGAAATTAGGAAATAAAAGGGGTTCAATTTATGGTAGTCTAGTCACTTACCTGGGAATTATTTTCTTATGGGTTTAGGTTTTGGACATTAACCACTGCTCAAAAACTCCTCGTTTGTTTACTGTAAACAAACGTTGGTAACCACTCTTCAACCTCTTTATCAAATCTTACATTAAATTTTATTAAACTTTATATCAAATTTATCATTCAACCACTATTAAGTATTAACCCCAATCTCCAAACAAGTAGTTGACTACTCCACTATTATTAACCTCAATCCACAAATGTGTAGCTAAACACTCCTAACTACTATTAACCAAAATAGCTGTCCAATTTGGTTGGGTTTAATAGACCATTTATTCTCTAAGGAGCTTAGATCAATGATAATTGATGTGTATCCTCGATTAAAAGGTCTTACAATATTGTTGAACTAAAAAATAGGTTATGGTTATCATGTTTTCGCAAACTTTTACTGTATAGATATTTGTGAAATGGTATTAAACTGAACGGGCATGTTTATCCTTGGTATAGTGGAGCGAACCTCTAATTTCCTGGTATGAAAAGTAGTATTAATCTGAAATAGAATGATGATTGACTTGATAGTAATGTCATATTCTCATGAAGGCCCATGAAGGATGCCAATTCCAAACTTGGAGTTTTGTTTCTGAGTTGAACTTCTGCTGATTTTGTGTTCTATCTTTAGATTTGAAAACAGCCCTAGGAAAGAAGCGCAAAGATGGGAAATCTGGACCCCTAAAACCTTTGACCACAATTCAGCGTGTTCATATCGGTCGACTAGTCGAGAAATATGGGGACAATTATGAGGTAACCTTCAGTTTTACTTGCTCTTGAAATTGTTCAATTGGCTTTTGTCTCATTCAAAGTTGTTCTGCAGAGGATGTTCATGGATACAAAGCTGAACTCAATGCAGCATTCTGTTGCCACACTGGAGAAATTATGCAAAAGATATCACAGTTTTTCAGATAAGAATCCATTGATACTGATTCGTTAAAGATAATGTCGATCGCCATCTTTCGAATTGTTTTGTTACATGAGGTGGAATGGTATGATCATGAAATCTAATTGAACAATATTGTCTGAACCCAAATATATGTGAGGCTTGATAGATAGCTTATTCTCTTGCTTGCTGCATTTTTCTTCCTTTCAAGAAAATGCTCATAAGTTTCTCATGTTTAGTTAAGGTGGCATATAGAGCATTTTCATTTTGGGGAAATTGAGTGTTTTGCAAGAATTTTAGGTTGTATGAATATCTATAACTTAGCTACCTTTTGGGTTGCCTATGTAGGTAAATTCCCTAATGCATTTTTGATATTATATTGAAAACCATGAAACTGATGTTAGAATTTATTTACAAA

mRNA sequence

TTTAGATTGGTTTTCTAAACCACCAAACCGATAAATCCAAATCTTCTTCTTCTAAACCCTAGCCACCAATTTCGCCCATCTCGTTCAATTTGCAGAGCCGCCATGGGAAGATCTCGAAGAAAGTACCAGAGATCTAGGGCAAAGGTCAAGGTCGGCCTCCCCAAACGCCACCCCAATGTCTTCAAGCCATCCTTCTGTATGCCGCCGAAGCTCCGCGCATTGCTCGCCGACCAATTCGAGGAAGATCCATCATGGGACGACAAAGCCAGTGTCATTCACAACTACAAGTCCTTTGGTGTTCTTTCTAACCCTAATTTGCTCAGCGTTCGGTCCCGGACTAATCACATCGTTGAGAGCGACTCTCTTCAGGTCCCGCCGTCTCTGCCGCCTTCCGATGAGCCTGATTCCTTGCTTGATTCTTCCGGCAGCGATGTGGAAGAGGACGATTTGAAAACAGCCCTAGGAAAGAAGCGCAAAGATGGGAAATCTGGACCCCTAAAACCTTTGACCACAATTCAGCGTGTTCATATCGGTCGACTAGTCGAGAAATATGGGGACAATTATGAGAGGATGTTCATGGATACAAAGCTGAACTCAATGCAGCATTCTGTTGCCACACTGGAGAAATTATGCAAAAGATATCACAGTTTTTCAGATAAGAATCCATTGATACTGATTCGTTAAAGATAATGTCGATCGCCATCTTTCGAATTGTTTTGTTACATGAGGTGGAATGGTATGATCATGAAATCTAATTGAACAATATTGTCTGAACCCAAATATATGTGAGGCTTGATAGATAGCTTATTCTCTTGCTTGCTGCATTTTTCTTCCTTTCAAGAAAATGCTCATAAGTTTCTCATGTTTAGTTAAGGTGGCATATAGAGCATTTTCATTTTGGGGAAATTGAGTGTTTTGCAAGAATTTTAGGTTGTATGAATATCTATAACTTAGCTACCTTTTGGGTTGCCTATGTAGGTAAATTCCCTAATGCATTTTTGATATTATATTGAAAACCATGAAACTGATGTTAGAATTTATTTACAAA

Coding sequence (CDS)

ATGGGAAGATCTCGAAGAAAGTACCAGAGATCTAGGGCAAAGGTCAAGGTCGGCCTCCCCAAACGCCACCCCAATGTCTTCAAGCCATCCTTCTGTATGCCGCCGAAGCTCCGCGCATTGCTCGCCGACCAATTCGAGGAAGATCCATCATGGGACGACAAAGCCAGTGTCATTCACAACTACAAGTCCTTTGGTGTTCTTTCTAACCCTAATTTGCTCAGCGTTCGGTCCCGGACTAATCACATCGTTGAGAGCGACTCTCTTCAGGTCCCGCCGTCTCTGCCGCCTTCCGATGAGCCTGATTCCTTGCTTGATTCTTCCGGCAGCGATGTGGAAGAGGACGATTTGAAAACAGCCCTAGGAAAGAAGCGCAAAGATGGGAAATCTGGACCCCTAAAACCTTTGACCACAATTCAGCGTGTTCATATCGGTCGACTAGTCGAGAAATATGGGGACAATTATGAGAGGATGTTCATGGATACAAAGCTGAACTCAATGCAGCATTCTGTTGCCACACTGGAGAAATTATGCAAAAGATATCACAGTTTTTCAGATAAGAATCCATTGATACTGATTCGTTAA

Protein sequence

MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEPDSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLILIR

Homology

[Close]

BLAST of Sed0022553.1 vs. NCBI nr
Match: XP_038898931.1 (nucleolar protein 16 [Benincasa hispida])

HSP 1 Score: 360.5 bits (924), Expect = 8.8e-96
Identity = 176/193 (91.19%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHN 60
           MGRSRRKY+RSR KVKVGLPKRHPNVFKPSFCMPPKLR+LLA+QFEEDP+WDDKA VIHN
Sbjct: 1   MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPTWDDKARVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEPDSLLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRT+HIVESDSLQVPPS PPSDEPDS+LDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQVPPSQPPSDEPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRKDGKS PL+PLTTIQRVH+GRL+EKYGD+YERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSFSDKNPLILIR 194
           HS  DKNPLILIR
Sbjct: 181 HSCLDKNPLILIR 193

[Close]

BLAST of Sed0022553.1 vs. NCBI nr
Match: XP_022991747.1 (uncharacterized protein LOC111488281 [Cucurbita maxima])

HSP 1 Score: 358.2 bits (918), Expect = 4.4e-95
Identity = 175/193 (90.67%), Postives = 189/193 (97.93%), Query Frame = 0


Query: 1   MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHN 60
           MGRSRRKY+RSRAKV+VGLPKR+PNVFKPSFCMPPKLR+LLA+QFEEDP+WD+KASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEPDSLLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRT+HIVESDSLQVPPSLPPSD+PDS+LDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRKDGKS PLKPLTTIQRVH+GRL+EKYGD++ERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSFSDKNPLILIR 194
           HS  DKNPLIL R
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Sed0022553.1 vs. NCBI nr
Match: XP_023547523.1 (uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 356.3 bits (913), Expect = 1.7e-94
Identity = 174/193 (90.16%), Postives = 188/193 (97.41%), Query Frame = 0


Query: 1   MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHN 60
           MGRSRRKY+RSRAKV+VGLPKR+PNVFKPSFCMPPKLR+LLA+QFEEDP+WD+KASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEPDSLLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRT+HIVESDSLQVPPSLPPSD+PDS+LDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRKDGKS PLKPLTTIQRVH+GRL+EKYGD++ERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSFSDKNPLILIR 194
           H   DKNPLIL R
Sbjct: 181 HCCLDKNPLILTR 193

[Close]

BLAST of Sed0022553.1 vs. NCBI nr
Match: XP_022954094.1 (uncharacterized protein LOC111456462 [Cucurbita moschata] >KAG6575834.1 hypothetical protein SDJN03_26473, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 354.8 bits (909), Expect = 4.8e-94
Identity = 173/193 (89.64%), Postives = 188/193 (97.41%), Query Frame = 0


Query: 1   MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHN 60
           MGRSRRKY+RSRAKV+VGLPKR+PNVFKPSFCMPPKLR+LLA+QFEEDP+WD+KASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEPDSLLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRT+HIVESD LQVPPSLPPSD+PDS+LDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKR+DGKS PLKPLTTIQRVH+GRL+EKYGD++ERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSFSDKNPLILIR 194
           HS  DKNPLIL R
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Sed0022553.1 vs. NCBI nr
Match: KAG7014368.1 (hypothetical protein SDJN02_24545, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 351.3 bits (900), Expect = 5.4e-93
Identity = 172/193 (89.12%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHN 60
           MGRSRRKY+RSRAKV+VGLPKR+PNVFKPSFCMPPKLR+LLA+QFEEDP+WD+KASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEPDSLLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRT+HIVESD LQVPPSLPPSD+PDS+LDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKR+ GKS PLKPLTTIQRVH+GRL+EKYGD++ERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRRYGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSFSDKNPLILIR 194
           HS  DKNPLIL R
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Sed0022553.1 vs. ExPASy TrEMBL
Match: A0A6J1JMQ4 (Nucleolar protein 16 OS=Cucurbita maxima OX=3661 GN=LOC111488281 PE=3 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.1e-95
Identity = 175/193 (90.67%), Postives = 189/193 (97.93%), Query Frame = 0


Query: 1   MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHN 60
           MGRSRRKY+RSRAKV+VGLPKR+PNVFKPSFCMPPKLR+LLA+QFEEDP+WD+KASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEPDSLLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRT+HIVESDSLQVPPSLPPSD+PDS+LDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRKDGKS PLKPLTTIQRVH+GRL+EKYGD++ERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSFSDKNPLILIR 194
           HS  DKNPLIL R
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Sed0022553.1 vs. ExPASy TrEMBL
Match: A0A6J1GRW5 (Nucleolar protein 16 OS=Cucurbita moschata OX=3662 GN=LOC111456462 PE=3 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.3e-94
Identity = 173/193 (89.64%), Postives = 188/193 (97.41%), Query Frame = 0


Query: 1   MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHN 60
           MGRSRRKY+RSRAKV+VGLPKR+PNVFKPSFCMPPKLR+LLA+QFEEDP+WD+KASVIHN
Sbjct: 1   MGRSRRKYKRSRAKVQVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPAWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEPDSLLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRT+HIVESD LQVPPSLPPSD+PDS+LDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDFLQVPPSLPPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKR+DGKS PLKPLTTIQRVH+GRL+EKYGD++ERMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRRDGKSAPLKPLTTIQRVHVGRLIEKYGDDHERMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSFSDKNPLILIR 194
           HS  DKNPLIL R
Sbjct: 181 HSCLDKNPLILTR 193

[Close]

BLAST of Sed0022553.1 vs. ExPASy TrEMBL
Match: A0A6J1L083 (Nucleolar protein 16 OS=Cucurbita maxima OX=3661 GN=LOC111497894 PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 6.0e-90
Identity = 169/193 (87.56%), Postives = 184/193 (95.34%), Query Frame = 0


Query: 1   MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHN 60
           MGRSRRKY+RSR KV+VGLPKRHPNVFKPSFCMPPKLR+LL +QFEEDP+WD+KASVI+N
Sbjct: 1   MGRSRRKYKRSRPKVQVGLPKRHPNVFKPSFCMPPKLRSLLVEQFEEDPAWDEKASVINN 60

Query: 61  YKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEPDSLLDSSGSDVEEDDLKTAL 120
           YKSFGVLSNPNLLSVRSRT+HIVESDSLQVPPS  PSD+ DS+LDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPSQLPSDDLDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKR+DGKSGPLKPLTTIQRVH+GRL+EKYG++YERMFMDTKLNSMQHSV TLEKLCKRY
Sbjct: 121 GKKRRDGKSGPLKPLTTIQRVHVGRLIEKYGNDYERMFMDTKLNSMQHSVGTLEKLCKRY 180

Query: 181 HSFSDKNPLILIR 194
           HS S KNPLIL R
Sbjct: 181 HS-SGKNPLILTR 192

[Close]

BLAST of Sed0022553.1 vs. ExPASy TrEMBL
Match: A0A6J1DE29 (Nucleolar protein 16 OS=Momordica charantia OX=3673 GN=LOC111019220 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 3.9e-89
Identity = 167/194 (86.08%), Postives = 182/194 (93.81%), Query Frame = 0


Query: 1   MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHN 60
           MGRSRRKY++SR KV+VGLPKR+P VFKPSFCMPPKLR+LLA+QFEE P WD+KASVIHN
Sbjct: 1   MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHN 60

Query: 61  YKSFGVLSNPNLLSVRSRTNHIVESDSLQV-PPSLPPSDEPDSLLDSSGSDVEEDDLKTA 120
           YKSFGVLSNPNLLSVRSRT+HIVESDSLQV PPSL PS +PDS+LD SGSD EEDDLK+A
Sbjct: 61  YKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGDPDSVLDPSGSDAEEDDLKSA 120

Query: 121 LGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKR 180
           LGKKRKDGKSGPLKPLTT+QRVH+GRL+EKYGD+YERMFMDTKLNSMQHSVATLEKLCKR
Sbjct: 121 LGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKR 180

Query: 181 YHSFSDKNPLILIR 194
           YHS  DKNPLIL R
Sbjct: 181 YHSCPDKNPLILTR 194

[Close]

BLAST of Sed0022553.1 vs. ExPASy TrEMBL
Match: A0A5A7VLA5 (Nucleolar protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00570 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.5e-88
Identity = 164/193 (84.97%), Postives = 182/193 (94.30%), Query Frame = 0


Query: 1   MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHN 60
           MGRSRRKY++SR KVKVGLPKR+PNVFKPSFCMPPKLR+LLA+QFEEDP+WD+K SVI N
Sbjct: 1   MGRSRRKYKKSRPKVKVGLPKRNPNVFKPSFCMPPKLRSLLAEQFEEDPTWDEKGSVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEPDSLLDSSGSDVEEDDLKTAL 120
           YKSFGV+SNPNLLSVRSRT+HIVESDSLQV    PPSD+PDS+LDSSGSDVEEDDLKTAL
Sbjct: 61  YKSFGVISNPNLLSVRSRTDHIVESDSLQV----PPSDDPDSVLDSSGSDVEEDDLKTAL 120

Query: 121 GKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRY 180
           GKKRKDGKS PL+PLTT+QRVH+G+L+EKYGD+Y+RMFMDTKLNSMQHSVATLEKLCKRY
Sbjct: 121 GKKRKDGKSAPLQPLTTLQRVHVGKLIEKYGDDYQRMFMDTKLNSMQHSVATLEKLCKRY 180

Query: 181 HSFSDKNPLILIR 194
           HS  DKNPLIL R
Sbjct: 181 HSCLDKNPLILTR 189

[Close]

BLAST of Sed0022553.1 vs. TAIR 10
Match: AT1G02870.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )

HSP 1 Score: 252.7 bits (644), Expect = 2.4e-67
Identity = 126/195 (64.62%), Postives = 158/195 (81.03%), Query Frame = 0


Query: 1   MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHN 60
           M RSRRKY+ SRAKV+V LPK++PN+FKP+F  PPKLRAL+ D   + P WDD+ASVI N
Sbjct: 1   MARSRRKYRNSRAKVRVALPKKNPNIFKPAFNFPPKLRALMGD---DVPEWDDQASVIQN 60

Query: 61  YKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSL-PPSDEP---DSLLDSSGSDVEEDDL 120
           YKSFGV+SNPNLL +R+RT+H+++ DSL VPP + PP+D+P   +     SGS++EEDDL
Sbjct: 61  YKSFGVISNPNLLGIRARTDHMIQDDSLNVPPPVEPPTDDPIAKEFEPIDSGSELEEDDL 120

Query: 121 KTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKL 180
           KTALGK+RKDGKS PL+PLTT+QR HI RLVEK+GD+ E M+ D KLNSMQHSVATL KL
Sbjct: 121 KTALGKQRKDGKSAPLQPLTTMQRTHIRRLVEKHGDDIEGMYRDRKLNSMQHSVATLRKL 180

Query: 181 CKRYHSFSDKNPLIL 192
           C RY  + DKNP+++
Sbjct: 181 CTRYQIYKDKNPILV 192

The following BLAST results are available for this feature:

BLAST of Sed0022553.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898931.1	8.8e-96	91.19	nucleolar protein 16 [Benincasa hispida]	[more]
XP_022991747.1	4.4e-95	90.67	uncharacterized protein LOC111488281 [Cucurbita maxima]	[more]
XP_023547523.1	1.7e-94	90.16	uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo]	[more]
XP_022954094.1	4.8e-94	89.64	uncharacterized protein LOC111456462 [Cucurbita moschata] >KAG6575834.1 hypothet...	[more]
KAG7014368.1	5.4e-93	89.12	hypothetical protein SDJN02_24545, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Sed0022553.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0022553.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JMQ4	2.1e-95	90.67	Nucleolar protein 16 OS=Cucurbita maxima OX=3661 GN=LOC111488281 PE=3 SV=1	[more]
A0A6J1GRW5	2.3e-94	89.64	Nucleolar protein 16 OS=Cucurbita moschata OX=3662 GN=LOC111456462 PE=3 SV=1	[more]
A0A6J1L083	6.0e-90	87.56	Nucleolar protein 16 OS=Cucurbita maxima OX=3661 GN=LOC111497894 PE=3 SV=1	[more]
A0A6J1DE29	3.9e-89	86.08	Nucleolar protein 16 OS=Momordica charantia OX=3673 GN=LOC111019220 PE=3 SV=1	[more]
A0A5A7VLA5	2.5e-88	84.97	Nucleolar protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411...	[more]

BLAST of Sed0022553.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02870.1	2.4e-67	64.62	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019002	Ribosome biogenesis protein Nop16	PFAM	PF09420	Nop16	coord: 114..181 e-value: 5.8E-17 score: 62.4
IPR019002	Ribosome biogenesis protein Nop16	PANTHER	PTHR13243	HSPC111 PROTEIN-RELATED	coord: 1..184
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..134

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0022553	Sed0022553	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022553.1-five_prime_utr	Sed0022553.1-five_prime_utr-LG09:36595610..36595711	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022553.1-exon	Sed0022553.1-exon-LG09:36595610..36596054	exon
Sed0022553.1-exon	Sed0022553.1-exon-LG09:36597229..36597350	exon
Sed0022553.1-exon	Sed0022553.1-exon-LG09:36597421..36597901	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022553.1-cds	Sed0022553.1-cds-LG09:36595712..36596054	CDS
Sed0022553.1-cds	Sed0022553.1-cds-LG09:36597229..36597350	CDS
Sed0022553.1-cds	Sed0022553.1-cds-LG09:36597421..36597537	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0022553.1-three_prime_utr	Sed0022553.1-three_prime_utr-LG09:36597538..36597901	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0022553.1	Sed0022553.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
cellular_component	GO:0005730	nucleolus