Sed0021882.1 (mRNA) Chayote v1

Overview


Name	Sed0021882.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	biogenesis of lysosome-related organelles complex 1 subunit 2
Location	LG06: 10893594 .. 10895856 (-)
Sequence length	857
RNA-Seq Expression	Sed0021882.1
Synteny	Sed0021882.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAAAACTAAATCCAAACGAGCTATTATTTTCAACCCCTCTATAAAATTCATATCCAATCGAACTATTATTTGCAACCCCTCCACAAATAACCACATCCAAATGAGCTATTACTAAATTTCTAATCACTTCCAGATAACCTCTCAATTTTAATCGCTCTACGTTACCGCTCTACAAAATAACATCCAAACAGCCCCTAACGGTGTTAGATTTTTCGTTCGCTGTTTCCCCACCCGTCGTTCGAGATCCAGTTGCGGTTCCCTGTCCCGACGAGGCGACGGCGACGGCGAGTGATTACAATTCCTGGAAGGTTTTATGGCGGAGAAAGGGGAAGAACAATCGCTTAACAGGGACGAGCTCGCCGAATCGCTCAACGAATTCTTCACCAGCGTATCTGAAATGATCAAATCGGATCTTCTTGTAACCTTCTAAAGAGCCCTAATTCTCTTACTTTCCATTTTGTTGTTTTTCTATGCGTCGTTTTATTCTGCTCTCTGGTCGATGTTTGTTGTCCACTGTGTTGAATTATGGGAATTGAATGGGTTCTTATAACTATTTGTTCATTGAGTACTATTAACTTCTGAAAAATTAATAGCCCATGCGAAGTGTGTTTTGACTAGGGGTTTAGAGTTGTTGAAACATGAAAGTTTTTTTCTTTTTTCTTTTAAGTACAAGGTTGGGGAGGGAGATCACAAACCTTGCAAAGATGGTACCTCTCACGAGAGCCAAATACCGATTTTCGGAATCGAACCCGTGACCATGGTATTGAATTGGATTACCATAAAACCATAAAATCATCATGCCACCTTCAACCTCAAAGCTTGTTTGTCTTTGCAAAACCATTAATCCATTCTCTGCTATTTTTTTTACCTTGAATGTCCAATTTCTCGTTTAGTTGTCATTTGTACTATTGTAATCAAAACCCGAAAAGTTGGATGTTTGAAAATCCTTTATCAATTTATTTTTATCTTTAGCCCAATGTTTTAAAAAGCTCGAGGTGCACTAAGGCGCATTGACCCTCTGAAGCCTGAAGCACAAGGTGCACCAAAAGATGCGGACTTTTTGGTCACTAAGGCGCATTTCTCGTATACATACACAAAACATATATATTCATCTCTTTCAATATAGAATTTTTTACATAGTCAATCATAGGATTGACGATTAGGTTTTAATTGTTTTTTTAAAAATAAAACTTTGAAGTAATTGTTGATTGAATTTGAAATTGTAAAAACAAATAGAGAAAAATGAGTAAAACATTACCGTTTGACTTAGATTTTAAATAAACAAAAAAGTCCTCAAGACGTGCGACTTGCGCGCCATAGGGCTTTATGAAAAGGTGCGTGCCTGGGGCTTTTTTGAGCCTGAGGCGCGCCTTTTCGGGCTTTTTAAAGCACTGCTTTAGCCAGGAAGAGAAAACCTCTGGTGGCATCTTAAGAGGTTACGGACTTACGGGTTAAATCTCTATCTCCAAATGTTGTTGAATTAACCTCCATTGAGTGGAACTAGTAGTCAAGAGAGCTTTAAGAGGAGTTAGGAGCTGAAGGGATCAATTCATAGTCGTCGCCTACTTCAGAATTAATTTCCTACAAATTTCCTTGACATTCTAATGTTGTAGGGCTAGACGGTATATCCCATGATAATGTTGACCCAATCAGTCATTGATATTATAAAACAAAACAAATACTTTTGAATTAAAAATAAAATCTTTTTATCTTTAACTATGAGTCTATGATAAAGCTTCTGGTTTGGTTTATTCTATGAGTCTAAGATCTGGGAAGCAACTTTTGCTTCTATAATGATGGTGGGCATGTTATTTCATTACATAGGGATCAAGCAATCAGCTGGCACTTTTAGAGAAAATGAATCTCAGGGTGGCAGAAGAGTACAAAGGTTTTGGCGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAATTGAAGGCCAAGAGTGGTGGCTTTGATGAGTACAATAACCAGATTGAGAAAATTGAAAATCAGGTGACTGAATTTGAAGCTGTAATTTCAATGCTTGATAAGCAGGTTTCCATGCTGGAGTCTAAAGTTTTATCAGTTTGTCAAAACACGCCTTCATGAATAAATCTCTATTTTAAGTTCAAATTTAAGAACGGTTCCTTTCAGAATGTTCCTGCTTCTACATTGCTTAGATTGTCAAATCTTTTATGATATCTCATTCACTGGCAGTTGATGATGCTGAAGAGTTGACATCTTTGCTTTCTGTTCCTGCTGAATCTGTAGTGATTTTT

mRNA sequence

ATAAAAACTAAATCCAAACGAGCTATTATTTTCAACCCCTCTATAAAATTCATATCCAATCGAACTATTATTTGCAACCCCTCCACAAATAACCACATCCAAATGAGCTATTACTAAATTTCTAATCACTTCCAGATAACCTCTCAATTTTAATCGCTCTACGTTACCGCTCTACAAAATAACATCCAAACAGCCCCTAACGGTGTTAGATTTTTCGTTCGCTGTTTCCCCACCCGTCGTTCGAGATCCAGTTGCGGTTCCCTGTCCCGACGAGGCGACGGCGACGGCGAGTGATTACAATTCCTGGAAGGTTTTATGGCGGAGAAAGGGGAAGAACAATCGCTTAACAGGGACGAGCTCGCCGAATCGCTCAACGAATTCTTCACCAGCGTATCTGAAATGATCAAATCGGATCTTCTTGGATCAAGCAATCAGCTGGCACTTTTAGAGAAAATGAATCTCAGGGTGGCAGAAGAGTACAAAGGTTTTGGCGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAATTGAAGGCCAAGAGTGGTGGCTTTGATGAGTACAATAACCAGATTGAGAAAATTGAAAATCAGGTGACTGAATTTGAAGCTGTAATTTCAATGCTTGATAAGCAGGTTTCCATGCTGGAGTCTAAAGTTTTATCAGTTTGTCAAAACACGCCTTCATGAATAAATCTCTATTTTAAGTTCAAATTTAAGAACGGTTCCTTTCAGAATGTTCCTGCTTCTACATTGCTTAGATTGTCAAATCTTTTATGATATCTCATTCACTGGCAGTTGATGATGCTGAAGAGTTGACATCTTTGCTTTCTGTTCCTGCTGAATCTGTAGTGATTTTT

Coding sequence (CDS)

ATGGCGGAGAAAGGGGAAGAACAATCGCTTAACAGGGACGAGCTCGCCGAATCGCTCAACGAATTCTTCACCAGCGTATCTGAAATGATCAAATCGGATCTTCTTGGATCAAGCAATCAGCTGGCACTTTTAGAGAAAATGAATCTCAGGGTGGCAGAAGAGTACAAAGGTTTTGGCGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAATTGAAGGCCAAGAGTGGTGGCTTTGATGAGTACAATAACCAGATTGAGAAAATTGAAAATCAGGTGACTGAATTTGAAGCTGTAATTTCAATGCTTGATAAGCAGGTTTCCATGCTGGAGTCTAAAGTTTTATCAGTTTGTCAAAACACGCCTTCATGA

Protein sequence

MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVISMLDKQVSMLESKVLSVCQNTPS

Homology

[Close]

BLAST of Sed0021882.1 vs. NCBI nr
Match: XP_022949044.1 (biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita moschata] >XP_022997803.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita maxima])

HSP 1 Score: 205.7 bits (522), Expect = 2.3e-49
Identity = 111/121 (91.74%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGD 60
           MAEK E+Q  N DELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKG GD
Sbjct: 1   MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGD 60

Query: 61  VASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVISMLDKQVSMLESKVLSVCQN 120
           VASGMRVFVEQLKAKSGGFDEY NQIEKIENQVTEFEAVISMLDK +SMLESKVLSVCQN
Sbjct: 61  VASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHISMLESKVLSVCQN 120

Query: 121 T 122
           +
Sbjct: 121 S 121

[Close]

BLAST of Sed0021882.1 vs. NCBI nr
Match: XP_038880795.1 (biogenesis of lysosome-related organelles complex 1 subunit 2 [Benincasa hispida])

HSP 1 Score: 205.3 bits (521), Expect = 3.0e-49
Identity = 112/122 (91.80%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGD 60
           MA+K EEQ  NRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLE+MNLRVAEEYKGFGD
Sbjct: 1   MAQK-EEQPPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLERMNLRVAEEYKGFGD 60

Query: 61  VASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVISMLDKQVSMLESKVLSVCQN 120
           VASGMRVFVEQLK+KSGGFDEY +QIEKIE+QVTEFEAVISMLDK VSMLESKVLSVCQN
Sbjct: 61  VASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQN 120

Query: 121 TP 123
           TP
Sbjct: 121 TP 121

[Close]

BLAST of Sed0021882.1 vs. NCBI nr
Match: KAG6607085.1 (Biogenesis of lysosome-related organelles complex 1 subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 204.9 bits (520), Expect = 4.0e-49
Identity = 110/121 (90.91%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGD 60
           MAEK E+Q  N DELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMN+RVAEEYKG GD
Sbjct: 1   MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNIRVAEEYKGLGD 60

Query: 61  VASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVISMLDKQVSMLESKVLSVCQN 120
           VASGMRVFVEQLKAKSGGFDEY NQIEKIENQVTEFEAVISMLDK +SMLESKVLSVCQN
Sbjct: 61  VASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHISMLESKVLSVCQN 120

Query: 121 T 122
           +
Sbjct: 121 S 121

[Close]

BLAST of Sed0021882.1 vs. NCBI nr
Match: XP_023525241.1 (biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.8 bits (517), Expect = 8.8e-49
Identity = 110/121 (90.91%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGD 60
           MAEK E+Q  N DELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKG G+
Sbjct: 1   MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGN 60

Query: 61  VASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVISMLDKQVSMLESKVLSVCQN 120
           VASGMRVFVEQLKAKSGGFDEY NQIEKIENQVTEFEAVISMLDK +SMLESKVLSVCQN
Sbjct: 61  VASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHISMLESKVLSVCQN 120

Query: 121 T 122
           +
Sbjct: 121 S 121

[Close]

BLAST of Sed0021882.1 vs. NCBI nr
Match: XP_004137147.1 (biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumis sativus] >KGN53763.1 hypothetical protein Csa_014951 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 2.6e-48
Identity = 110/122 (90.16%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGD 60
           MA+K EE+  NRD+LAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MNLRVAEEYKGFGD
Sbjct: 1   MAQK-EERLPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGD 60

Query: 61  VASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVISMLDKQVSMLESKVLSVCQN 120
           VASGMRVFVEQLK+KSGGFDEY NQIEKIE+QVTEFEAVISMLDK VSMLESKVLSVCQN
Sbjct: 61  VASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQN 120

Query: 121 TP 123
           TP
Sbjct: 121 TP 121

[Close]

BLAST of Sed0021882.1 vs. ExPASy Swiss-Prot
Match: F4K657 (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Arabidopsis thaliana OX=3702 GN=BLOS2 PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-30
Identity = 68/104 (65.38%), Postives = 86/104 (82.69%), Query Frame = 0


Query: 11  NRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVE 70
           +RD+LAESL   FTSVS M+KS+L G++N L LLEKMNLRVA EY   GDVA+G+RVF E
Sbjct: 4   SRDDLAESLQNLFTSVSSMVKSELQGTNNHLDLLEKMNLRVASEYDDMGDVAAGLRVFAE 63

Query: 71  QLKAKSGGFDEYNNQIEKIENQVTEFEAVISMLDKQVSMLESKV 115
           Q+K+KSGG DE+  Q++ IE QV+EFEAVIS+LD+ VS+LESK+
Sbjct: 64  QMKSKSGGLDEFVGQMDAIEKQVSEFEAVISVLDRYVSVLESKI 107

[Close]

BLAST of Sed0021882.1 vs. ExPASy Swiss-Prot
Match: Q54Y67 (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Dictyostelium discoideum OX=44689 GN=bloc1s2 PE=3 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 5.4e-09
Identity = 35/105 (33.33%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 13  DELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQL 72
           ++L  S  E FT VS  IKS+L  + +   LL +MN   + +Y+   +V  G+ VF+  L
Sbjct: 76  EDLQNSTKEMFTKVSSYIKSELATTVSDYNLLIQMNNITSSKYQDMTNVTKGLSVFMGDL 135

Query: 73  KAKSGGFDEYNNQIEKIENQVTEFEAVISMLDKQVSMLESKVLSV 118
           K K   F  Y ++I +++  VT+ E  + +LD+    LE KV ++
Sbjct: 136 KIKYEEFQPYFDKINELDKNVTDLEKTVQLLDEYTKRLEQKVKNI 180

[Close]

BLAST of Sed0021882.1 vs. ExPASy TrEMBL
Match: A0A6J1KEZ0 (biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111492648 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.1e-49
Identity = 111/121 (91.74%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGD 60
           MAEK E+Q  N DELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKG GD
Sbjct: 1   MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGD 60

Query: 61  VASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVISMLDKQVSMLESKVLSVCQN 120
           VASGMRVFVEQLKAKSGGFDEY NQIEKIENQVTEFEAVISMLDK +SMLESKVLSVCQN
Sbjct: 61  VASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHISMLESKVLSVCQN 120

Query: 121 T 122
           +
Sbjct: 121 S 121

[Close]

BLAST of Sed0021882.1 vs. ExPASy TrEMBL
Match: A0A6J1GBP4 (biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111452507 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.1e-49
Identity = 111/121 (91.74%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGD 60
           MAEK E+Q  N DELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKG GD
Sbjct: 1   MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGD 60

Query: 61  VASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVISMLDKQVSMLESKVLSVCQN 120
           VASGMRVFVEQLKAKSGGFDEY NQIEKIENQVTEFEAVISMLDK +SMLESKVLSVCQN
Sbjct: 61  VASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHISMLESKVLSVCQN 120

Query: 121 T 122
           +
Sbjct: 121 S 121

[Close]

BLAST of Sed0021882.1 vs. ExPASy TrEMBL
Match: A0A0A0KW18 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G123360 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48
Identity = 110/122 (90.16%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGD 60
           MA+K EE+  NRD+LAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MNLRVAEEYKGFGD
Sbjct: 1   MAQK-EERLPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGD 60

Query: 61  VASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVISMLDKQVSMLESKVLSVCQN 120
           VASGMRVFVEQLK+KSGGFDEY NQIEKIE+QVTEFEAVISMLDK VSMLESKVLSVCQN
Sbjct: 61  VASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQN 120

Query: 121 TP 123
           TP
Sbjct: 121 TP 121

[Close]

BLAST of Sed0021882.1 vs. ExPASy TrEMBL
Match: A0A1S3C0T0 (biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucumis melo OX=3656 GN=LOC103495715 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.3e-47
Identity = 108/122 (88.52%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 1   MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGD 60
           MA+K EE+  NRDELAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MN RVAEEYKG+GD
Sbjct: 1   MAQK-EERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGD 60

Query: 61  VASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVISMLDKQVSMLESKVLSVCQN 120
           VASGMRVFVEQLK+KSGGFDEY +QIEKIE+QVTEFEAVISMLDK VSMLESKVLSVCQN
Sbjct: 61  VASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQN 120

Query: 121 TP 123
           TP
Sbjct: 121 TP 121

[Close]

BLAST of Sed0021882.1 vs. ExPASy TrEMBL
Match: A0A438IMQ6 (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Vitis vinifera OX=29760 GN=BLOS2_1 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.9e-36
Identity = 87/118 (73.73%), Postives = 98/118 (83.05%), Query Frame = 0


Query: 5   GEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASG 64
           G+E++  RD LAESLN+ FTSVS M+K  L G++N L LLEKMNLRVAEEYKGFGDVASG
Sbjct: 3   GKEEAKERDALAESLNDLFTSVSTMVKGQLQGTNNLLELLEKMNLRVAEEYKGFGDVASG 62

Query: 65  MRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVISMLDKQVSMLESKVLSVCQNTP 123
           +RVFVEQLKAKSG FDEY  QI+ IE QVTEFEAVISMLDK VS+LESK+ SV Q  P
Sbjct: 63  LRVFVEQLKAKSGNFDEYVQQIDAIEQQVTEFEAVISMLDKYVSLLESKLQSVYQTPP 120

[Close]

BLAST of Sed0021882.1 vs. TAIR 10
Match: AT5G49550.1 (Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction with BLOS1. )

HSP 1 Score: 133.3 bits (334), Expect = 1.4e-31
Identity = 68/104 (65.38%), Postives = 86/104 (82.69%), Query Frame = 0


Query: 11  NRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVE 70
           +RD+LAESL   FTSVS M+KS+L G++N L LLEKMNLRVA EY   GDVA+G+RVF E
Sbjct: 4   SRDDLAESLQNLFTSVSSMVKSELQGTNNHLDLLEKMNLRVASEYDDMGDVAAGLRVFAE 63

Query: 71  QLKAKSGGFDEYNNQIEKIENQVTEFEAVISMLDKQVSMLESKV 115
           Q+K+KSGG DE+  Q++ IE QV+EFEAVIS+LD+ VS+LESK+
Sbjct: 64  QMKSKSGGLDEFVGQMDAIEKQVSEFEAVISVLDRYVSVLESKI 107

The following BLAST results are available for this feature:

BLAST of Sed0021882.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949044.1	2.3e-49	91.74	biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita moschat...	[more]
XP_038880795.1	3.0e-49	91.80	biogenesis of lysosome-related organelles complex 1 subunit 2 [Benincasa hispida...	[more]
KAG6607085.1	4.0e-49	90.91	Biogenesis of lysosome-related organelles complex 1 subunit 2, partial [Cucurbit...	[more]
XP_023525241.1	8.8e-49	90.91	biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita pepo su...	[more]
XP_004137147.1	2.6e-48	90.16	biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumis sativus] ...	[more]

BLAST of Sed0021882.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4K657	1.9e-30	65.38	Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Arabidopsis tha...	[more]
Q54Y67	5.4e-09	33.33	Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Dictyostelium d...	[more]

BLAST of Sed0021882.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KEZ0	1.1e-49	91.74	biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucurbita maxim...	[more]
A0A6J1GBP4	1.1e-49	91.74	biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucurbita mosch...	[more]
A0A0A0KW18	1.2e-48	90.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G123360 PE=3 SV=1	[more]
A0A1S3C0T0	2.3e-47	88.52	biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucumis melo OX...	[more]
A0A438IMQ6	1.9e-36	73.73	Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Vitis vinifera ...	[more]

BLAST of Sed0021882.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49550.1	1.4e-31	65.38	Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction wi...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 72..106
None	No IPR available	PANTHER	PTHR47882	BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 2	coord: 7..122
IPR019269	Biogenesis of lysosome-related organelles complex-1, subunit 2	PFAM	PF10046	BLOC1_2	coord: 21..114 e-value: 5.6E-26 score: 90.8

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0021882	Sed0021882	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0021882.1-exon	Sed0021882.1-exon-LG06:10893594..10894030	exon
Sed0021882.1-exon	Sed0021882.1-exon-LG06:10895437..10895856	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0021882.1-three_prime_utr	Sed0021882.1-three_prime_utr-LG06:10893594..10893763	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0021882.1-cds	Sed0021882.1-cds-LG06:10893764..10894030	CDS
Sed0021882.1-cds	Sed0021882.1-cds-LG06:10895437..10895541	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0021882.1-five_prime_utr	Sed0021882.1-five_prime_utr-LG06:10895542..10895856	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0021882.1	Sed0021882.1-protein	polypeptide