Sed0021175.2 (mRNA) Chayote v1

Overview


Name	Sed0021175.2
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	homeobox-leucine zipper protein HOX11-like
Location	LG07: 5141100 .. 5142449 (-)
Sequence length	1164
RNA-Seq Expression	Sed0021175.2
Synteny	Sed0021175.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCTTTATATTTATTTGACGCACCATAGCGCTAAACCTCATACTCTTTTCTTTGTTTCGCAAAGTCCTCCCCACTTCAAAACTCGCCGTCCAGTCGATCTCCTTTTTCCTCCGTCGCCGCCGCCGCCGCAGCACCGATGGAGCTTGGCCTGAGCTTGGGCGACGCCCCAAATCCCTTCCGATTCGCCGAGAAGAAACCGAAGCCAACGCCGCTGCACCGCCATTCTCATCCCGATTTAGGATTCAGCGTCGACTTATCCATCGGACGACCGGTCGCCGGAGACATAGAACCCGACGACGAAGAAAACGAATCCGACGGTAATGAAGACTCTCCGATTCAGCTCGATCTTCTCCCTCACAATCCTGTTCCTCGAAGCCTAACAAATCCGTACCAAGGATTCCCATGGCCGTCGTCCGAAAACGGTAAGCTTCTCGAAATCTCAAAAAAACCCTAACCCTAACTAACCCCAAAGTCTCCGAATCATTTTTCCCCCAATTTTGGTAACGGAAATCGGTTGTTGTTTTCAGAGGAAGGCGAAGACCGAACCGCATCGCCGAACAGCGCGGCGTCGTACGGCGGCGGCGGAGGGAATGTTTCTTCACGAGCGAGCGACGAAGACGAAAATGGCTCAGCGAGGAAGAAACTCAGACTCTCGAAACAGCAATCCGCGTTTCTGGAAGAGAGCTTCAAAGAACACAATACATTGAATCCTGTAGGTTTTTTTTTCGCATTTTCAGCGATTTGATTCATTGAATCTCCGAATCTGATTGTTTCGATTCCGATTTTGAATCAGAAACAGAAACAGGCTCTGGCTAAGCAACTGAATCTTCGTCCTCGCCAAGTGGAGGTTTGGTTTCAAAACCGAAGAGCCAGGTACCAATCCGTTGAACCCTATGAGTTCATCGATTTTTCGTCCAAATCTGTTCTGATATCCTGAAATGAACAGGACGAAATTGAAGCAAACGGAAGTGGATTGTGAGTATTTGAAGAGATGTTGCGAGACATTAACGGAAGAGAATCGACGCCTTCGAAAGGAGCTTCACGATTTAAGAGCTCTGAAATCTACAAACTCATTCTACATGCAATTACCGGCCACAACACTCACGATGTGCCCATCCTGTGAGAAAGTAACCTCCACCGTCGCGGGCGCCACCGCAGGCGGAGGCAAAGTCTCCAAACAATCTGGTCCTCTTCTTTCCCATTTTCTGCCAAAACAAAATGATAACAAGGGCTGAGGTGAATCATGAGGGTGGTCCATTCGCTGTACATAAACCCTTTTCCTAATAACAAAAGAAGAAAAAATAACAGTAGGATCCAAGAAAAAAAGATGAACAGGTTCTTGTTATTATT

mRNA sequence

GGCTTTATATTTATTTGACGCACCATAGCGCTAAACCTCATACTCTTTTCTTTGTTTCGCAAAGTCCTCCCCACTTCAAAACTCGCCGTCCAGTCGATCTCCTTTTTCCTCCGTCGCCGCCGCCGCCGCAGCACCGATGGAGCTTGGCCTGAGCTTGGGCGACGCCCCAAATCCCTTCCGATTCGCCGAGAAGAAACCGAAGCCAACGCCGCTGCACCGCCATTCTCATCCCGATTTAGGATTCAGCGTCGACTTATCCATCGGACGACCGGTCGCCGGAGACATAGAACCCGACGACGAAGAAAACGAATCCGACGGTAATGAAGACTCTCCGATTCAGCTCGATCTTCTCCCTCACAATCCTGTTCCTCGAAGCCTAACAAATCCGTACCAAGGATTCCCATGGCCGTCGTCCGAAAACGAGGAAGGCGAAGACCGAACCGCATCGCCGAACAGCGCGGCGTCGTACGGCGGCGGCGGAGGGAATGTTTCTTCACGAGCGAGCGACGAAGACGAAAATGGCTCAGCGAGGAAGAAACTCAGACTCTCGAAACAGCAATCCGCGTTTCTGGAAGAGAGCTTCAAAGAACACAATACATTGAATCCTAAACAGAAACAGGCTCTGGCTAAGCAACTGAATCTTCGTCCTCGCCAAGTGGAGGTTTGGTTTCAAAACCGAAGAGCCAGGTACCAATCCGTTGAACCCTATGAGTTCATCGATTTTTCGTCCAAATCTGTTCTGATATCCTGAAATGAACAGGACGAAATTGAAGCAAACGGAAGTGGATTGTGAGTATTTGAAGAGATGTTGCGAGACATTAACGGAAGAGAATCGACGCCTTCGAAAGGAGCTTCACGATTTAAGAGCTCTGAAATCTACAAACTCATTCTACATGCAATTACCGGCCACAACACTCACGATGTGCCCATCCTGTGAGAAAGTAACCTCCACCGTCGCGGGCGCCACCGCAGGCGGAGGCAAAGTCTCCAAACAATCTGGTCCTCTTCTTTCCCATTTTCTGCCAAAACAAAATGATAACAAGGGCTGAGGTGAATCATGAGGGTGGTCCATTCGCTGTACATAAACCCTTTTCCTAATAACAAAAGAAGAAAAAATAACAGTAGGATCCAAGAAAAAAAGATGAACAGGTTCTTGTTATTATT

Coding sequence (CDS)

ATGGAGCTTGGCCTGAGCTTGGGCGACGCCCCAAATCCCTTCCGATTCGCCGAGAAGAAACCGAAGCCAACGCCGCTGCACCGCCATTCTCATCCCGATTTAGGATTCAGCGTCGACTTATCCATCGGACGACCGGTCGCCGGAGACATAGAACCCGACGACGAAGAAAACGAATCCGACGGTAATGAAGACTCTCCGATTCAGCTCGATCTTCTCCCTCACAATCCTGTTCCTCGAAGCCTAACAAATCCGTACCAAGGATTCCCATGGCCGTCGTCCGAAAACGAGGAAGGCGAAGACCGAACCGCATCGCCGAACAGCGCGGCGTCGTACGGCGGCGGCGGAGGGAATGTTTCTTCACGAGCGAGCGACGAAGACGAAAATGGCTCAGCGAGGAAGAAACTCAGACTCTCGAAACAGCAATCCGCGTTTCTGGAAGAGAGCTTCAAAGAACACAATACATTGAATCCTAAACAGAAACAGGCTCTGGCTAAGCAACTGAATCTTCGTCCTCGCCAAGTGGAGGTTTGGTTTCAAAACCGAAGAGCCAGGTACCAATCCGTTGAACCCTATGAGTTCATCGATTTTTCGTCCAAATCTGTTCTGATATCCTGA

Protein sequence

MELGLSLGDAPNPFRFAEKKPKPTPLHRHSHPDLGFSVDLSIGRPVAGDIEPDDEENESDGNEDSPIQLDLLPHNPVPRSLTNPYQGFPWPSSENEEGEDRTASPNSAASYGGGGGNVSSRASDEDENGSARKKLRLSKQQSAFLEESFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARYQSVEPYEFIDFSSKSVLIS

Homology

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BLAST of Sed0021175.2 vs. NCBI nr
Match: XP_022954327.1 (homeobox-leucine zipper protein HOX11-like [Cucurbita moschata])

HSP 1 Score: 283.5 bits (724), Expect = 1.5e-72
Identity = 159/214 (74.30%), Postives = 166/214 (77.57%), Query Frame = 0


Query: 1   MELGLSLGDAPNPFRFAEKKPKPTPLHRH-SHPDLGFSVDLSIGRPVAGDIEPDDE---- 60
           MELGLSLGDAP PFRF EK+P  TP  R  S PDLGF VDLSIGRPVAG+ E D+E    
Sbjct: 1   MELGLSLGDAPKPFRFVEKQPPVTPRQRRISRPDLGFCVDLSIGRPVAGEKEDDEEKINQ 60

Query: 61  -ENESDGNEDSPIQLDLLPHNPVPRSLTNPYQGFPWPSSENEEGEDRTASPNSAAS---- 120
            + ESDGNED PIQLDLLPHNPVPR+LTNPYQGFPWPSSEN+EGEDRTASPNSAAS    
Sbjct: 61  RDYESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQM 120

Query: 121 ----YGGGGG----------------NVSSRASDEDENGSARKKLRLSKQQSAFLEESFK 180
               YGGGG                   SSRASDEDENGS RKKLRLSK+QSAFLEESFK
Sbjct: 121 EFGLYGGGGNISCQREQMENGVIESERASSRASDEDENGSTRKKLRLSKEQSAFLEESFK 180

Query: 181 EHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRAR 185
           EHNTLNPKQK ALAKQLNLRPRQVEVWFQNRRAR
Sbjct: 181 EHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR 214

[Close]

BLAST of Sed0021175.2 vs. NCBI nr
Match: KAG6575663.1 (Homeobox-leucine zipper protein HAT14, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014215.1 Homeobox-leucine zipper protein HAT14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 283.5 bits (724), Expect = 1.5e-72
Identity = 159/214 (74.30%), Postives = 166/214 (77.57%), Query Frame = 0


Query: 1   MELGLSLGDAPNPFRFAEKKPKPTPLHRH-SHPDLGFSVDLSIGRPVAGDIEPDDE---- 60
           MELGLSLGDAP PFRF EK+P  TP  R  S PDLGF VDLSIGRPVAG+ E D+E    
Sbjct: 1   MELGLSLGDAPKPFRFVEKQPPVTPRQRRISRPDLGFCVDLSIGRPVAGEKEDDEEKINQ 60

Query: 61  -ENESDGNEDSPIQLDLLPHNPVPRSLTNPYQGFPWPSSENEEGEDRTASPNSAAS---- 120
            + ESDGNED PIQLDLLPHNPVPR+LTNPYQGFPWPSSEN+EGEDRTASPNSAAS    
Sbjct: 61  RDYESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQM 120

Query: 121 ----YGGGGG----------------NVSSRASDEDENGSARKKLRLSKQQSAFLEESFK 180
               YGGGG                   SSRASDEDENGS RKKLRLSK+QSAFLEESFK
Sbjct: 121 EFGLYGGGGNISSQREQMENGVIESERASSRASDEDENGSTRKKLRLSKEQSAFLEESFK 180

Query: 181 EHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRAR 185
           EHNTLNPKQK ALAKQLNLRPRQVEVWFQNRRAR
Sbjct: 181 EHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR 214

[Close]

BLAST of Sed0021175.2 vs. NCBI nr
Match: XP_038896826.1 (homeobox-leucine zipper protein HOX11-like [Benincasa hispida])

HSP 1 Score: 283.1 bits (723), Expect = 1.9e-72
Identity = 158/218 (72.48%), Postives = 167/218 (76.61%), Query Frame = 0


Query: 1   MELGLSLGDAPNPFRFAEKKPK-PTPLHRHSHPDLGFSVDLSIGRPVAGDIEPDDE---- 60
           MELGLSLGDAP PFRF EK+P+ P P   HS PDLGF VDLSIGRPVAG+ E D++    
Sbjct: 1   MELGLSLGDAPKPFRFVEKQPQVPPPQRGHSRPDLGFCVDLSIGRPVAGEKEGDEDKLNQ 60

Query: 61  -ENESDGNEDSPIQLDLLPHNPVPRSLTNPYQGFPWPSSENEEGEDRTASPNSAAS---- 120
            E+ESDGNED PIQLDLLPHNPVPR+LTNPYQGFPWPSSEN+EGEDRTASPNSAAS    
Sbjct: 61  REDESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQM 120

Query: 121 ----YGGGGG--------------------NVSSRASDEDENGSARKKLRLSKQQSAFLE 180
               YGGGG                       SSRASDEDENG  RKKLRLSK+QSAFLE
Sbjct: 121 EFGLYGGGGNISCRRDQMENGVTNEVGESERASSRASDEDENGCTRKKLRLSKEQSAFLE 180

Query: 181 ESFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRAR 185
           ESFKEHNTLNPKQK ALAKQLNLRPRQVEVWFQNRRAR
Sbjct: 181 ESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR 218

[Close]

BLAST of Sed0021175.2 vs. NCBI nr
Match: XP_022991918.1 (homeobox-leucine zipper protein HOX11-like [Cucurbita maxima])

HSP 1 Score: 282.7 bits (722), Expect = 2.5e-72
Identity = 159/214 (74.30%), Postives = 166/214 (77.57%), Query Frame = 0


Query: 1   MELGLSLGDAPNPFRFAEKKPKPTPLHRH-SHPDLGFSVDLSIGRPVAGDIEPDDE---- 60
           MELGLSLGDAP PFRF EK+P  TP  R  S PDLGF VDLSIGRPVAG+ E D+E    
Sbjct: 1   MELGLSLGDAPKPFRFVEKQPPVTPRPRRISRPDLGFCVDLSIGRPVAGEKEDDEEKINQ 60

Query: 61  -ENESDGNEDSPIQLDLLPHNPVPRSLTNPYQGFPWPSSENEEGEDRTASPNSAAS---- 120
            + ESDGNED PIQLDLLPHNPVPR+LTNPYQGFPWPSSEN+EGEDRTASPNSAAS    
Sbjct: 61  RDYESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQM 120

Query: 121 ----YGGGGG----------------NVSSRASDEDENGSARKKLRLSKQQSAFLEESFK 180
               YGGGG                   SSRASDEDENGS RKKLRLSK+QSAFLEESFK
Sbjct: 121 EFGLYGGGGNISCQRDQMENGVIESERASSRASDEDENGSTRKKLRLSKEQSAFLEESFK 180

Query: 181 EHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRAR 185
           EHNTLNPKQK ALAKQLNLRPRQVEVWFQNRRAR
Sbjct: 181 EHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR 214

[Close]

BLAST of Sed0021175.2 vs. NCBI nr
Match: XP_023548566.1 (homeobox-leucine zipper protein HOX11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.0 bits (720), Expect = 4.2e-72
Identity = 159/214 (74.30%), Postives = 166/214 (77.57%), Query Frame = 0


Query: 1   MELGLSLGDAPNPFRFAEKKPKPTPLHRH-SHPDLGFSVDLSIGRPVAGDIEPDDE---- 60
           MELGLSLGDAP PFRF EK+P+ TP  R  S PDLGF VDLSIGRPVAG  E D+E    
Sbjct: 1   MELGLSLGDAPKPFRFVEKQPQVTPRPRRISRPDLGFCVDLSIGRPVAGAKEDDEEKINQ 60

Query: 61  -ENESDGNEDSPIQLDLLPHNPVPRSLTNPYQGFPWPSSENEEGEDRTASPNSAAS---- 120
            + ESDGNED PIQLDLLPHNPVPR+LTNPYQGFPWPSSEN+EGEDRTASPNSAAS    
Sbjct: 61  RDYESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQM 120

Query: 121 ----YGGGGG----------------NVSSRASDEDENGSARKKLRLSKQQSAFLEESFK 180
               YGGGG                   SSRASDEDENGS RKKLRLSK+QSAFLEESFK
Sbjct: 121 EFGLYGGGGNISCQREQMENGVIESERASSRASDEDENGSTRKKLRLSKEQSAFLEESFK 180

Query: 181 EHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRAR 185
           EHNTLNPKQK ALAKQLNLRPRQVEVWFQNRRAR
Sbjct: 181 EHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR 214

[Close]

BLAST of Sed0021175.2 vs. ExPASy Swiss-Prot
Match: A2Z1U1 (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica OX=39946 GN=HOX11 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 9.6e-27
Identity = 67/79 (84.81%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 106 NSAASYGGGGGNVSSRASDEDENGSARKKLRLSKQQSAFLEESFKEHNTLNPKQKQALAK 165
           N AA  GGGG    SRASDED+ GSARKKLRLSK+QSAFLEESFKEH+TLNPKQK ALAK
Sbjct: 63  NDAAPGGGGGDRSCSRASDEDDGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAK 122

Query: 166 QLNLRPRQVEVWFQNRRAR 185
           QLNLRPRQVEVWFQNRRAR
Sbjct: 123 QLNLRPRQVEVWFQNRRAR 141

[Close]

BLAST of Sed0021175.2 vs. ExPASy Swiss-Prot
Match: Q67UE2 (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX11 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 9.6e-27
Identity = 67/79 (84.81%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 106 NSAASYGGGGGNVSSRASDEDENGSARKKLRLSKQQSAFLEESFKEHNTLNPKQKQALAK 165
           N AA  GGGG    SRASDED+ GSARKKLRLSK+QSAFLEESFKEH+TLNPKQK ALAK
Sbjct: 150 NDAAPGGGGGDRSCSRASDEDDGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAK 209

Query: 166 QLNLRPRQVEVWFQNRRAR 185
           QLNLRPRQVEVWFQNRRAR
Sbjct: 210 QLNLRPRQVEVWFQNRRAR 228

[Close]

BLAST of Sed0021175.2 vs. ExPASy Swiss-Prot
Match: A2YW03 (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica OX=39946 GN=HOX27 PE=2 SV=2)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-25
Identity = 67/81 (82.72%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 108 AASYGGGGG----NVSSRASDEDENGSARKKLRLSKQQSAFLEESFKEHNTLNPKQKQAL 167
           AA+ GGGGG      SSRASD+DE  SARKKLRLSK+QSAFLEESFKEH+TLNPKQK AL
Sbjct: 145 AAAQGGGGGGGGERSSSRASDDDEGASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVAL 204

Query: 168 AKQLNLRPRQVEVWFQNRRAR 185
           AKQLNLRPRQVEVWFQNRRAR
Sbjct: 205 AKQLNLRPRQVEVWFQNRRAR 225

[Close]

BLAST of Sed0021175.2 vs. ExPASy Swiss-Prot
Match: Q6YPD0 (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX27 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.4e-25
Identity = 68/90 (75.56%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 98  GEDRTASPNSAASYGGGGG---NVSSRASDEDENGSARKKLRLSKQQSAFLEESFKEHNT 157
           G+       +AA  GGGGG     SSRASD+DE  SARKKLRLSK+QSAFLEESFKEH+T
Sbjct: 136 GQGLRGHAEAAAQGGGGGGGGERSSSRASDDDEGASARKKLRLSKEQSAFLEESFKEHST 195

Query: 158 LNPKQKQALAKQLNLRPRQVEVWFQNRRAR 185
           LNPKQK ALAKQLNLRPRQVEVWFQNRRAR
Sbjct: 196 LNPKQKVALAKQLNLRPRQVEVWFQNRRAR 225

[Close]

BLAST of Sed0021175.2 vs. ExPASy Swiss-Prot
Match: P46665 (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana OX=3702 GN=HAT14 PE=2 SV=3)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-22
Identity = 102/241 (42.32%), Postives = 118/241 (48.96%), Query Frame = 0


Query: 1   MELGLSLGD-APNPFRFAEKKPK----PTPLHRHSHPDLGF--SVDLSIG--RPVAGDIE 60
           MEL LSLGD     F F EK  K           S  DLGF  ++D++ G  R ++    
Sbjct: 1   MELALSLGDNTKKQFSFMEKNSKINNPSVSSTSTSEKDLGFCMALDVAFGGHRSLSSSSS 60

Query: 61  PDDEENES--------------DGNEDSPIQLDL-----LPHNPVPRSLTNPYQGFPWPS 120
           P  E+ +                 + D P+QL L     LP N   R       G     
Sbjct: 61  PSVEDEKKKPAPRAKKSDEFRVSSSVDPPLQLQLHFPNWLPENSKGRQGGRMPLGAATVV 120

Query: 121 SENEEGEDRTAS-----PNSAA----------SYG-----------GGGGNVSSRASDE- 180
            E EE E+   S     P+S            SYG                 +SRAS+E 
Sbjct: 121 EEEEEEEEAVPSMSVSPPDSVTSSFQLDFGIKSYGYERRSNKRDIDDEVERSASRASNED 180

Query: 181 --DENGSARKKLRLSKQQSAFLEESFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRA 185
             DENGS RKKLRLSK QSAFLE+SFKEH+TLNPKQK ALAKQLNLRPRQVEVWFQNRRA
Sbjct: 181 NDDENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRA 240

[Close]

BLAST of Sed0021175.2 vs. ExPASy TrEMBL
Match: A0A6J1GQQ3 (homeobox-leucine zipper protein HOX11-like OS=Cucurbita moschata OX=3662 GN=LOC111456605 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 7.0e-73
Identity = 159/214 (74.30%), Postives = 166/214 (77.57%), Query Frame = 0


Query: 1   MELGLSLGDAPNPFRFAEKKPKPTPLHRH-SHPDLGFSVDLSIGRPVAGDIEPDDE---- 60
           MELGLSLGDAP PFRF EK+P  TP  R  S PDLGF VDLSIGRPVAG+ E D+E    
Sbjct: 1   MELGLSLGDAPKPFRFVEKQPPVTPRQRRISRPDLGFCVDLSIGRPVAGEKEDDEEKINQ 60

Query: 61  -ENESDGNEDSPIQLDLLPHNPVPRSLTNPYQGFPWPSSENEEGEDRTASPNSAAS---- 120
            + ESDGNED PIQLDLLPHNPVPR+LTNPYQGFPWPSSEN+EGEDRTASPNSAAS    
Sbjct: 61  RDYESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQM 120

Query: 121 ----YGGGGG----------------NVSSRASDEDENGSARKKLRLSKQQSAFLEESFK 180
               YGGGG                   SSRASDEDENGS RKKLRLSK+QSAFLEESFK
Sbjct: 121 EFGLYGGGGNISCQREQMENGVIESERASSRASDEDENGSTRKKLRLSKEQSAFLEESFK 180

Query: 181 EHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRAR 185
           EHNTLNPKQK ALAKQLNLRPRQVEVWFQNRRAR
Sbjct: 181 EHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR 214

[Close]

BLAST of Sed0021175.2 vs. ExPASy TrEMBL
Match: A0A6J1JXM6 (homeobox-leucine zipper protein HOX11-like OS=Cucurbita maxima OX=3661 GN=LOC111488413 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.2e-72
Identity = 159/214 (74.30%), Postives = 166/214 (77.57%), Query Frame = 0


Query: 1   MELGLSLGDAPNPFRFAEKKPKPTPLHRH-SHPDLGFSVDLSIGRPVAGDIEPDDE---- 60
           MELGLSLGDAP PFRF EK+P  TP  R  S PDLGF VDLSIGRPVAG+ E D+E    
Sbjct: 1   MELGLSLGDAPKPFRFVEKQPPVTPRPRRISRPDLGFCVDLSIGRPVAGEKEDDEEKINQ 60

Query: 61  -ENESDGNEDSPIQLDLLPHNPVPRSLTNPYQGFPWPSSENEEGEDRTASPNSAAS---- 120
            + ESDGNED PIQLDLLPHNPVPR+LTNPYQGFPWPSSEN+EGEDRTASPNSAAS    
Sbjct: 61  RDYESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQM 120

Query: 121 ----YGGGGG----------------NVSSRASDEDENGSARKKLRLSKQQSAFLEESFK 180
               YGGGG                   SSRASDEDENGS RKKLRLSK+QSAFLEESFK
Sbjct: 121 EFGLYGGGGNISCQRDQMENGVIESERASSRASDEDENGSTRKKLRLSKEQSAFLEESFK 180

Query: 181 EHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRAR 185
           EHNTLNPKQK ALAKQLNLRPRQVEVWFQNRRAR
Sbjct: 181 EHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR 214

[Close]

BLAST of Sed0021175.2 vs. ExPASy TrEMBL
Match: A0A0A0KBJ3 (Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G429520 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 7.3e-70
Identity = 155/218 (71.10%), Postives = 164/218 (75.23%), Query Frame = 0


Query: 1   MELGLSLGDAPNPFRFAEKKPK-PTPLHRHSHPDLGFSVDLSIGRPVAGDIEPDDE---- 60
           MELGLSLGDAP PFRF EK+ + P+P  R S  DLGF VDLSIGR VAGD E D++    
Sbjct: 1   MELGLSLGDAPKPFRFVEKQSQVPSPQRRLSRKDLGFCVDLSIGRSVAGDKEDDEDKPNQ 60

Query: 61  -ENESDGNEDSPIQLDLLPHNPVPRSLTNPYQGFPWPSSENEEGEDRTASPNSAAS---- 120
            E+ESDGNED P QLDLLPHNPVPR+LTNPYQGFPWPSSEN+EGEDRTASPNSAAS    
Sbjct: 61  GEDESDGNEDPPTQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQM 120

Query: 121 ----YGGGGG--------------------NVSSRASDEDENGSARKKLRLSKQQSAFLE 180
               YG GG                       SSRASDEDENG  RKKLRLSK+QSAFLE
Sbjct: 121 EFGLYGSGGNISSRRDQMENGVMNEVGESERASSRASDEDENGCTRKKLRLSKEQSAFLE 180

Query: 181 ESFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRAR 185
           ESFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRAR
Sbjct: 181 ESFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRAR 218

[Close]

BLAST of Sed0021175.2 vs. ExPASy TrEMBL
Match: A0A5D3CJS2 (Homeobox-leucine zipper protein HOX11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001180 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 3.6e-69
Identity = 153/218 (70.18%), Postives = 164/218 (75.23%), Query Frame = 0


Query: 1   MELGLSLGDAPNPFRFAEKKPK-PTPLHRHSHPDLGFSVDLSIGRPVAGDIEPDDE---- 60
           MELGLSLGDAP PFRF +K+ + P+P  R S  DLGF VDLSIGR VAGD E D++    
Sbjct: 1   MELGLSLGDAPKPFRFVDKQSQVPSPQRRLSRKDLGFCVDLSIGRSVAGDKEDDEDKPNQ 60

Query: 61  -ENESDGNEDSPIQLDLLPHNPVPRSLTNPYQGFPWPSSENEEGEDRTASPNSAAS---- 120
            E+ESDGNED P+QLDLLPHNPVPR+LTNPYQGFPWPSSEN+EGEDRTASPNSAAS    
Sbjct: 61  GEDESDGNEDPPVQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQM 120

Query: 121 ----YGGGGG--------------------NVSSRASDEDENGSARKKLRLSKQQSAFLE 180
               YG GG                       SSRASDEDENG  RKKLRLSK+QSAFLE
Sbjct: 121 EFGLYGSGGNISCRRDQMENGVMNEVGESERASSRASDEDENGCTRKKLRLSKEQSAFLE 180

Query: 181 ESFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRAR 185
           ESFKEHNTLNPKQK ALAKQLNLRPRQVEVWFQNRRAR
Sbjct: 181 ESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR 218

[Close]

BLAST of Sed0021175.2 vs. ExPASy TrEMBL
Match: A0A1S3CEP0 (homeobox-leucine zipper protein HOX11-like OS=Cucumis melo OX=3656 GN=LOC103499889 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 3.6e-69
Identity = 153/218 (70.18%), Postives = 164/218 (75.23%), Query Frame = 0


Query: 1   MELGLSLGDAPNPFRFAEKKPK-PTPLHRHSHPDLGFSVDLSIGRPVAGDIEPDDE---- 60
           MELGLSLGDAP PFRF +K+ + P+P  R S  DLGF VDLSIGR VAGD E D++    
Sbjct: 1   MELGLSLGDAPKPFRFVDKQSQVPSPQRRLSRKDLGFCVDLSIGRSVAGDKEDDEDKPNQ 60

Query: 61  -ENESDGNEDSPIQLDLLPHNPVPRSLTNPYQGFPWPSSENEEGEDRTASPNSAAS---- 120
            E+ESDGNED P+QLDLLPHNPVPR+LTNPYQGFPWPSSEN+EGEDRTASPNSAAS    
Sbjct: 61  GEDESDGNEDPPVQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQM 120

Query: 121 ----YGGGGG--------------------NVSSRASDEDENGSARKKLRLSKQQSAFLE 180
               YG GG                       SSRASDEDENG  RKKLRLSK+QSAFLE
Sbjct: 121 EFGLYGSGGNISCRRDQMENGVMNEVGESERASSRASDEDENGCTRKKLRLSKEQSAFLE 180

Query: 181 ESFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRAR 185
           ESFKEHNTLNPKQK ALAKQLNLRPRQVEVWFQNRRAR
Sbjct: 181 ESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR 218

[Close]

BLAST of Sed0021175.2 vs. TAIR 10
Match: AT5G06710.1 (homeobox from Arabidopsis thaliana )

HSP 1 Score: 108.2 bits (269), Expect = 7.8e-24
Identity = 102/241 (42.32%), Postives = 118/241 (48.96%), Query Frame = 0


Query: 1   MELGLSLGD-APNPFRFAEKKPK----PTPLHRHSHPDLGF--SVDLSIG--RPVAGDIE 60
           MEL LSLGD     F F EK  K           S  DLGF  ++D++ G  R ++    
Sbjct: 1   MELALSLGDNTKKQFSFMEKNSKINNPSVSSTSTSEKDLGFCMALDVAFGGHRSLSSSSS 60

Query: 61  PDDEENES--------------DGNEDSPIQLDL-----LPHNPVPRSLTNPYQGFPWPS 120
           P  E+ +                 + D P+QL L     LP N   R       G     
Sbjct: 61  PSVEDEKKKPAPRAKKSDEFRVSSSVDPPLQLQLHFPNWLPENSKGRQGGRMPLGAATVV 120

Query: 121 SENEEGEDRTAS-----PNSAA----------SYG-----------GGGGNVSSRASDE- 180
            E EE E+   S     P+S            SYG                 +SRAS+E 
Sbjct: 121 EEEEEEEEAVPSMSVSPPDSVTSSFQLDFGIKSYGYERRSNKRDIDDEVERSASRASNED 180

Query: 181 --DENGSARKKLRLSKQQSAFLEESFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRA 185
             DENGS RKKLRLSK QSAFLE+SFKEH+TLNPKQK ALAKQLNLRPRQVEVWFQNRRA
Sbjct: 181 NDDENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRA 240

[Close]

BLAST of Sed0021175.2 vs. TAIR 10
Match: AT2G22800.1 (Homeobox-leucine zipper protein family )

HSP 1 Score: 99.8 bits (247), Expect = 2.8e-21
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 0


Query: 125 EDENG-SARKKLRLSKQQSAFLEESFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRA 184
           EDE G SARKKLRL+KQQSA LEESFK+H+TLNPKQKQ LA+QLNLRPRQVEVWFQNRRA
Sbjct: 104 EDEEGISARKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRA 163

[Close]

BLAST of Sed0021175.2 vs. TAIR 10
Match: AT5G47370.1 (Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein )

HSP 1 Score: 98.2 bits (243), Expect = 8.1e-21
Identity = 75/165 (45.45%), Postives = 92/165 (55.76%), Query Frame = 0


Query: 65  SPIQLDLLPHNPVPRSLTNPYQGFPW------------------PSSENEEGEDRTASPN 124
           +P+Q++L P++    SL+N  Q  PW                  PS+ N E +   +SPN
Sbjct: 21  NPLQMNLNPNS----SLSNNLQRLPWNQTFDPTSDLRKIDVNSFPSTVNCEEDTGVSSPN 80

Query: 125 SAAS---------------YGGGGGN----------VSSRASDEDENG--SARKKLRLSK 184
           S  S                G G G+           S   SDE+E+G  ++RKKLRLSK
Sbjct: 81  STISSTISGKRSEREGISGTGVGSGDDHDEITPDRGYSRGTSDEEEDGGETSRKKLRLSK 140

[Close]

BLAST of Sed0021175.2 vs. TAIR 10
Match: AT4G37790.1 (Homeobox-leucine zipper protein family )

HSP 1 Score: 94.7 bits (234), Expect = 8.9e-20
Identity = 82/194 (42.27%), Postives = 98/194 (50.52%), Query Frame = 0


Query: 3   LGLSLGDAPNPFRFAEKKPKPTPLHRHSHPDLGFSVDLSIGRPVAGDIEPDDEENESDGN 62
           LGL L   PN +  A KK   T  HR    D   ++ LS                     
Sbjct: 13  LGLGLSPTPNNYNHAIKKSSSTVDHRFIRLDPSLTLSLS--------------------G 72

Query: 63  EDSPIQLDLLPHNPVPRSLTNPYQGFPWPSSENEEGEDRTASPNSAASYGGGGGN----- 122
           E   I+      + + R  T+ + G    SS   + E   +        GG G       
Sbjct: 73  ESYKIKTGAGAGDQICRQ-TSSHSGISSFSSGRVKREREIS--------GGDGEEEAEET 132

Query: 123 ----VSSRASD--EDENG-SARKKLRLSKQQSAFLEESFKEHNTLNPKQKQALAKQLNLR 182
               V SR SD  +DE G SARKKLRL+KQQSA LE++FK H+TLNPKQKQALA+QLNLR
Sbjct: 133 TERVVCSRVSDDHDDEEGVSARKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLR 177

Query: 183 PRQVEVWFQNRRAR 185
           PRQVEVWFQNRRAR
Sbjct: 193 PRQVEVWFQNRRAR 177

[Close]

BLAST of Sed0021175.2 vs. TAIR 10
Match: AT2G44910.1 (homeobox-leucine zipper protein 4 )

HSP 1 Score: 92.0 bits (227), Expect = 5.8e-19
Identity = 55/90 (61.11%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 98  GEDRTASPNSAASYGGGGGNVSSRASDEDENGS---ARKKLRLSKQQSAFLEESFKEHNT 157
           G D   +  ++ S GGG G      SD+++ G+   +RKKLRLSK Q+  LEE+FKEH+T
Sbjct: 130 GGDENEAERASCSRGGGSG-----GSDDEDGGNGDGSRKKLRLSKDQALVLEETFKEHST 189

Query: 158 LNPKQKQALAKQLNLRPRQVEVWFQNRRAR 185
           LNPKQK ALAKQLNLR RQVEVWFQNRRAR
Sbjct: 190 LNPKQKLALAKQLNLRARQVEVWFQNRRAR 214

The following BLAST results are available for this feature:

BLAST of Sed0021175.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954327.1	1.5e-72	74.30	homeobox-leucine zipper protein HOX11-like [Cucurbita moschata]	[more]
KAG6575663.1	1.5e-72	74.30	Homeobox-leucine zipper protein HAT14, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_038896826.1	1.9e-72	72.48	homeobox-leucine zipper protein HOX11-like [Benincasa hispida]	[more]
XP_022991918.1	2.5e-72	74.30	homeobox-leucine zipper protein HOX11-like [Cucurbita maxima]	[more]
XP_023548566.1	4.2e-72	74.30	homeobox-leucine zipper protein HOX11-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0021175.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2Z1U1	9.6e-27	84.81	Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
Q67UE2	9.6e-27	84.81	Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
A2YW03	1.1e-25	82.72	Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
Q6YPD0	2.4e-25	75.56	Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
P46665	1.1e-22	42.32	Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana OX=3702 GN=HAT14 P...	[more]

BLAST of Sed0021175.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQQ3	7.0e-73	74.30	homeobox-leucine zipper protein HOX11-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1JXM6	1.2e-72	74.30	homeobox-leucine zipper protein HOX11-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A0A0KBJ3	7.3e-70	71.10	Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G429520 PE...	[more]
A0A5D3CJS2	3.6e-69	70.18	Homeobox-leucine zipper protein HOX11-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3CEP0	3.6e-69	70.18	homeobox-leucine zipper protein HOX11-like OS=Cucumis melo OX=3656 GN=LOC1034998...	[more]

BLAST of Sed0021175.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06710.1	7.8e-24	42.32	homeobox from Arabidopsis thaliana	[more]
AT2G22800.1	2.8e-21	86.89	Homeobox-leucine zipper protein family	[more]
AT5G47370.1	8.1e-21	45.45	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein	[more]
AT4G37790.1	8.9e-20	42.27	Homeobox-leucine zipper protein family	[more]
AT2G44910.1	5.8e-19	61.11	homeobox-leucine zipper protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 130..192 e-value: 1.6E-13 score: 60.9
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 132..185 e-value: 4.8E-16 score: 58.4
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 128..188 score: 16.908318
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 132..185 e-value: 5.98982E-17 score: 69.9648
None	No IPR available	GENE3D	1.10.10.60		coord: 136..185 e-value: 5.7E-20 score: 72.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..166
None	No IPR available	PANTHER	PTHR45714	FAMILY NOT NAMED	coord: 116..185
None	No IPR available	PANTHER	PTHR45714:SF47	PROTEIN, PUTATIVE-RELATED	coord: 116..185
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 121..185

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0021175	Sed0021175	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0021175.2-exon	Sed0021175.2-exon-LG07:5141100..5141656	exon
Sed0021175.2-exon	Sed0021175.2-exon-LG07:5141738..5141922	exon
Sed0021175.2-exon	Sed0021175.2-exon-LG07:5142028..5142449	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0021175.2-three_prime_utr	Sed0021175.2-three_prime_utr-LG07:5141100..5141512	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0021175.2-cds	Sed0021175.2-cds-LG07:5141513..5141656	CDS
Sed0021175.2-cds	Sed0021175.2-cds-LG07:5141738..5141922	CDS
Sed0021175.2-cds	Sed0021175.2-cds-LG07:5142028..5142313	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0021175.2-five_prime_utr	Sed0021175.2-five_prime_utr-LG07:5142314..5142449	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0021175.2	Sed0021175.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0043565	sequence-specific DNA binding