Sed0021080.1 (mRNA) Chayote v1

Overview


Name	Sed0021080.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Coatomer subunit zeta
Location	LG01: 16567804 .. 16570661 (-)
Sequence length	1020
RNA-Seq Expression	Sed0021080.1
Synteny	Sed0021080.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGAATAATACCGGCCGGAGTCGACTAAATATTCGAACAGTTTCCCATTTTTCGATTTTACGCGAGCGAGATCCGACGGAAGTTCGCGAAGAATTATTTGCCGGGAAATTTTTTTCACAAATCACATGGTCAGTTTCTCTCTTCACTTAGCTTTTAGAATTGTTGTAACTATCAGGGTTTTCTGTGATGAACATTGATGTTAGGATTACGGAGTTTTGTTCTAGTTGAACAATTATGATCGACAATATTGGGCGTTTGATTGGTTGATATCTTAGTAGATCTGACTTGTTTCGTACGCACAGATCGATCTCTGGATTTACTTAGACGATTCGGCTTTTAATCTTTCCTTGGATAGAACTTGTTGATTTCGTTTGTAGATTTGTATTTCTTCCTATCGAGTTTGTGATTTGTCTATGAATTTGACCGACTACTTCAAGATTTGCAAACCTTGATTTAAAACTAGTAGTGAAAATGCTTGAAGAAGCTGGGCATTTTATTTGTTTATTTTGATTTCAACAACATTTTGAGGCTGTGTGATTTTGATTCGTATAGCGTTGCTTTTTAAGAATCATTGTGGAGCGGTTTCAGAAGATGTCACAATCCTCAAATTCTGATGTAGCTTATTTGGTATTGCTATCTCTGAATTTTGCTTCAAGGATTAGGTTTTGTATGTTTCTCAGACAAGGTATCTGGGACTAAAAATTATTTAGGAAAAAACCTTCTGGTGGGCAGATCCTCCTTAATCCTTACCTGTTTGCTTAATTGTGTGCAGGATTCTTGCCCTTCCATTAAAAACATTCTTCTTTTGGATTCCGAAGGGAAGCGTGTAGCTGTCAAGTATTATTCAGATGACTGGGCTACAAATGGCGCGAAGGAAGCTTTTGAGAAATCTGTTTTCACCAAAACTCAGAAGACAAATGCTCGAACGGAAGGTAGTCAACTTTTAAAGCATTAGTTTTTCTGAGAATATTTATCCCTAATCATGTTAGCTTCTTTTAATCGCAATAAGGAAGCTTGCTAGTTAAATTATATGATTTGGTGTATCCTTAATCATTGTTTATTAACATGAGAATAAGAATAATGTTTTTTATTGCATTTTCGTGACTATTAGTAGAACGGCTTAGTCGAAGTTCTCTGCATTCAATAATTTATGTTCGACCATCTACCATTTTGTAGGATACAACCCTTTGTTGTGCATGTCTTATATCATTGGTGAATTCCTTCCTTACATTTAACTTGGTATTTACTTTAAATATACAGCGGAGATAGCAATGTTTGAGAACAATCTAGTGGTTTACAAGTTTGTTCAAGACCTTCACTTTTTTGTCACGGGTGGAGAAGATGAAAATGAGCTCATTTTAGCATCCGTTCTTCAGGGATTTTTTGATGCCGTGGGCCTTCTTCTTAGGTTTTGACACTATATATTCTCAAAGCTACTGTTTATTTTTTTTAAAGTCATAGTGTTCTTAGTTATTTATTTTTGTTTTTTGTACTTACAGGGGTAACGTAGAAAAGAAGGAGGCACTTGAGAACTTGGACCTCATTTTACTATGTCTTGATGAAATTATCGATGGAGGGTATCGTTCTTATGCTTCTTTCCTCATTACCTTTATTCTCTGCATTTCAAGTGTGTAACATGTTCTTCTATTTCCTTTTTTTGGCCAATCTTCTATATTTTTTTAGTTTAAAATTATCTGTATATTGATTGGGTCATTTTCTGATTTGCTACGCTCCTAAGTTGATGGGATGGCCATGCCAATTCTTGCTAGTCCAGTTATGAACATGAAAACTGAAAATGAACTGTGTTAGATAAATATATAACAAGAATCCAAGGTAGTAGTATTTAAACGTCATTAGGAAAGAAGTTCTAGGTTCATGATCATATGTGGAAACAATTTGTTGATGAATTAGGAATATGCTTTCGTTGTAGTTGCGAAACTGCTATAGAATAGAAACTATTTGGTTTTTTCTAATTATCAACTCCATCTATCGATGTATGTACTGTACTGGTAACTATGTTTTGATGGATAACTAGAAACCATTTAAATTTCATTATTTATTTTTTTTCACTAGTCAGTTCAAGAATAGATTCATTTTCATCTGAATATCCAAAAAGGTTTGGTGTTTACATTGCGTCGTTGTATCATCACTATGATTTTGTAAAATTGCAATGCAATAGTATACTTCACTTTCCTTTTTACAAATCATCCTGGCATTATGGAACTCGTTTCTAGAGAGTCTTTTAACCGTTCGTGCATATTTTTCAGCATTATTCTCGAGACGGATGCAAATGTCATTGCAGGGAAGGTCGCAAGTCACAGTATCGATAGTGGGGCGCCTTTGTCCGAGCAGGTACAATACTTAAGATCTTCTTTCCTCTCCTTGTTCTCCCTTTTAATTTCCAGTAACTTGAAAGGTCTCGCTCTTTCTCTTGCAGACAATAAGTCAAGCATTGGCCACAGCTCGTGAACATCTAGCAAGATCTCTTCTCAAATAATATGTCAAAAAAAAGGTTTTAAAAAAATCAGGTTGAGTTAACCTGGTATTGTTTTGGTAAGAGATGATTAATGTTGAGTTATCAATAGCTCTTCTGCATGCTTTTTGGTAAACCTGATTTTGGATTTGAGCACATGTAGTGCACTGCGGGACGGACTGGTGTTTTACCTGATTTTTTCGTAACAATGTTTTATTTTTTGGCCTTTTGGCTTTGTGGTTATTGCCTAAACGAAGTTCGAGTAGGTTTCTAATCGTGGCATTGCCAGATTTTTTTACTTTTGAGTTTGAAATTTGAATGTCATAAACACTGCATTTAGTGGTAATAGCGAGCTTATAGGCCTTTGATGTAATCCGAGCAGAGG

mRNA sequence

CTGAATAATACCGGCCGGAGTCGACTAAATATTCGAACAGTTTCCCATTTTTCGATTTTACGCGAGCGAGATCCGACGGAAGTTCGCGAAGAATTATTTGCCGGGAAATTTTTTTCACAAATCACATGGATTCTTGCCCTTCCATTAAAAACATTCTTCTTTTGGATTCCGAAGGGAAGCGTGTAGCTGTCAAGTATTATTCAGATGACTGGGCTACAAATGGCGCGAAGGAAGCTTTTGAGAAATCTGTTTTCACCAAAACTCAGAAGACAAATGCTCGAACGGAAGCGGAGATAGCAATGTTTGAGAACAATCTAGTGGTTTACAAGTTTGTTCAAGACCTTCACTTTTTTGTCACGGGTGGAGAAGATGAAAATGAGCTCATTTTAGCATCCGTTCTTCAGGGATTTTTTGATGCCGTGGGCCTTCTTCTTAGGGGTAACGTAGAAAAGAAGGAGGCACTTGAGAACTTGGACCTCATTTTACTATGTCTTGATGAAATTATCGATGGAGGCATTATTCTCGAGACGGATGCAAATGTCATTGCAGGGAAGGTCGCAAGTCACAGTATCGATAGTGGGGCGCCTTTGTCCGAGCAGACAATAAGTCAAGCATTGGCCACAGCTCGTGAACATCTAGCAAGATCTCTTCTCAAATAATATGTCAAAAAAAAGGTTTTAAAAAAATCAGGTTGAGTTAACCTGGTATTGTTTTGGTAAGAGATGATTAATGTTGAGTTATCAATAGCTCTTCTGCATGCTTTTTGGTAAACCTGATTTTGGATTTGAGCACATGTAGTGCACTGCGGGACGGACTGGTGTTTTACCTGATTTTTTCGTAACAATGTTTTATTTTTTGGCCTTTTGGCTTTGTGGTTATTGCCTAAACGAAGTTCGAGTAGGTTTCTAATCGTGGCATTGCCAGATTTTTTTACTTTTGAGTTTGAAATTTGAATGTCATAAACACTGCATTTAGTGGTAATAGCGAGCTTATAGGCCTTTGATGTAATCCGAGCAGAGG

Coding sequence (CDS)

ATGGATTCTTGCCCTTCCATTAAAAACATTCTTCTTTTGGATTCCGAAGGGAAGCGTGTAGCTGTCAAGTATTATTCAGATGACTGGGCTACAAATGGCGCGAAGGAAGCTTTTGAGAAATCTGTTTTCACCAAAACTCAGAAGACAAATGCTCGAACGGAAGCGGAGATAGCAATGTTTGAGAACAATCTAGTGGTTTACAAGTTTGTTCAAGACCTTCACTTTTTTGTCACGGGTGGAGAAGATGAAAATGAGCTCATTTTAGCATCCGTTCTTCAGGGATTTTTTGATGCCGTGGGCCTTCTTCTTAGGGGTAACGTAGAAAAGAAGGAGGCACTTGAGAACTTGGACCTCATTTTACTATGTCTTGATGAAATTATCGATGGAGGCATTATTCTCGAGACGGATGCAAATGTCATTGCAGGGAAGGTCGCAAGTCACAGTATCGATAGTGGGGCGCCTTTGTCCGAGCAGACAATAAGTCAAGCATTGGCCACAGCTCGTGAACATCTAGCAAGATCTCTTCTCAAATAA

Protein sequence

MDSCPSIKNILLLDSEGKRVAVKYYSDDWATNGAKEAFEKSVFTKTQKTNARTEAEIAMFENNLVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLILLCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK

Homology

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BLAST of Sed0021080.1 vs. NCBI nr
Match: XP_023542943.1 (coatomer subunit zeta-1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 332.4 bits (851), Expect = 2.4e-87
Identity = 172/177 (97.18%), Postives = 175/177 (98.87%), Query Frame = 0


Query: 1   MDSCPSIKNILLLDSEGKRVAVKYYSDDWATNGAKEAFEKSVFTKTQKTNARTEAEIAMF 60
           M+SCPSIKNILLLDSEGKRVAVKYYSDDW TN AKEAFEK+VFTKTQKTNARTEAEIAMF
Sbjct: 1   MESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMF 60

Query: 61  ENNLVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120
           ENN+VVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLIL
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120

Query: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK
Sbjct: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 177

[Close]

BLAST of Sed0021080.1 vs. NCBI nr
Match: XP_022954697.1 (coatomer subunit zeta-2-like isoform X2 [Cucurbita moschata] >XP_022994906.1 coatomer subunit zeta-2-like isoform X2 [Cucurbita maxima] >KAG6573351.1 Coatomer subunit zeta-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012515.1 Coatomer subunit zeta-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 330.9 bits (847), Expect = 6.9e-87
Identity = 171/177 (96.61%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 1   MDSCPSIKNILLLDSEGKRVAVKYYSDDWATNGAKEAFEKSVFTKTQKTNARTEAEIAMF 60
           M+SCPSIKNILLLDSEGKRVAVKYYSDDW TN  KEAFEK+VFTKTQKTNARTEAEIAMF
Sbjct: 1   MESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSTKEAFEKAVFTKTQKTNARTEAEIAMF 60

Query: 61  ENNLVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120
           ENN+VVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLIL
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120

Query: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK
Sbjct: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 177

[Close]

BLAST of Sed0021080.1 vs. NCBI nr
Match: XP_022139792.1 (coatomer subunit zeta-1-like [Momordica charantia])

HSP 1 Score: 330.5 bits (846), Expect = 9.0e-87
Identity = 170/177 (96.05%), Postives = 175/177 (98.87%), Query Frame = 0


Query: 1   MDSCPSIKNILLLDSEGKRVAVKYYSDDWATNGAKEAFEKSVFTKTQKTNARTEAEIAMF 60
           M+SCPSIKNILLLDSEGKRVAVKYYSDDW TN AKEAFEK+VFTKTQKTNARTEAEIAMF
Sbjct: 1   MESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMF 60

Query: 61  ENNLVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120
           ENN+VVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVG+LLRGNVEKKEALENLDLIL
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL 120

Query: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           LCLDEIIDGGIILETDANVIAGKVASHSID+GAPLSEQTISQALATAREHLARSLLK
Sbjct: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDTGAPLSEQTISQALATAREHLARSLLK 177

[Close]

BLAST of Sed0021080.1 vs. NCBI nr
Match: XP_023542942.1 (coatomer subunit zeta-2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.5 bits (846), Expect = 9.0e-87
Identity = 171/176 (97.16%), Postives = 174/176 (98.86%), Query Frame = 0


Query: 2   DSCPSIKNILLLDSEGKRVAVKYYSDDWATNGAKEAFEKSVFTKTQKTNARTEAEIAMFE 61
           +SCPSIKNILLLDSEGKRVAVKYYSDDW TN AKEAFEK+VFTKTQKTNARTEAEIAMFE
Sbjct: 3   ESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMFE 62

Query: 62  NNLVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 121
           NN+VVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLILL
Sbjct: 63  NNIVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 122

Query: 122 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK
Sbjct: 123 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178

[Close]

BLAST of Sed0021080.1 vs. NCBI nr
Match: XP_022954696.1 (coatomer subunit zeta-2-like isoform X1 [Cucurbita moschata] >XP_022994905.1 coatomer subunit zeta-2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 328.9 bits (842), Expect = 2.6e-86
Identity = 170/176 (96.59%), Postives = 173/176 (98.30%), Query Frame = 0


Query: 2   DSCPSIKNILLLDSEGKRVAVKYYSDDWATNGAKEAFEKSVFTKTQKTNARTEAEIAMFE 61
           +SCPSIKNILLLDSEGKRVAVKYYSDDW TN  KEAFEK+VFTKTQKTNARTEAEIAMFE
Sbjct: 3   ESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSTKEAFEKAVFTKTQKTNARTEAEIAMFE 62

Query: 62  NNLVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 121
           NN+VVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLILL
Sbjct: 63  NNIVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 122

Query: 122 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK
Sbjct: 123 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178

[Close]

BLAST of Sed0021080.1 vs. ExPASy Swiss-Prot
Match: Q6Z844 (Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica OX=39947 GN=COPZ2 PE=2 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 2.8e-75
Identity = 141/176 (80.11%), Postives = 163/176 (92.61%), Query Frame = 0


Query: 2   DSCPSIKNILLLDSEGKRVAVKYYSDDWATNGAKEAFEKSVFTKTQKTNARTEAEIAMFE 61
           +SCPS+KNILLLDSEGKRVAVKY+SDDW++N +K AFEKSVFTKT KTNAR+EAEI +F+
Sbjct: 7   ESCPSVKNILLLDSEGKRVAVKYFSDDWSSNASKLAFEKSVFTKTLKTNARSEAEITLFD 66

Query: 62  NNLVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 121
             +VVYKFVQDLHFFVT G+DENELI+A+VLQGF D+VGLLLRG+VEK+ ALENLDLILL
Sbjct: 67  GYIVVYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLRGDVEKRTALENLDLILL 126

Query: 122 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           C+DEI+DGGIILETDAN IAGKVA++++D  AP SEQTISQALATAREHLARSLLK
Sbjct: 127 CIDEIVDGGIILETDANTIAGKVATNAVDGSAPFSEQTISQALATAREHLARSLLK 182

[Close]

BLAST of Sed0021080.1 vs. ExPASy Swiss-Prot
Match: Q940S5 (Coatomer subunit zeta-1 OS=Arabidopsis thaliana OX=3702 GN=At1g60970 PE=2 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.2e-73
Identity = 142/177 (80.23%), Postives = 155/177 (87.57%), Query Frame = 0


Query: 1   MDSCPSIKNILLLDSEGKRVAVKYYSDDWATNGAKEAFEKSVFTKTQKTNARTEAEIAMF 60
           M+  P +KNILLLDSEGKRVAVKYYSDDW TN A+EAFEKSVFTKTQKTNARTE E+   
Sbjct: 1   MELPPKVKNILLLDSEGKRVAVKYYSDDWPTNSAQEAFEKSVFTKTQKTNARTEVEVTAL 60

Query: 61  ENNLVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120
           ENN+VVYKFVQDLHFFVTGGE+ENELILASVL+G FDAV LLLR NV+K+EAL+NLDLI 
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKREALDNLDLIF 120

Query: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           L  DEIIDGGI+LETDANVIAGK   +S D  APLSEQTISQALATAREHL RSL+K
Sbjct: 121 LSFDEIIDGGIVLETDANVIAGKAGINSTDPNAPLSEQTISQALATAREHLTRSLMK 177

[Close]

BLAST of Sed0021080.1 vs. ExPASy Swiss-Prot
Match: Q8H1F4 (Coatomer subunit zeta-3 OS=Arabidopsis thaliana OX=3702 GN=At4g08520 PE=2 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 3.4e-73
Identity = 139/175 (79.43%), Postives = 156/175 (89.14%), Query Frame = 0


Query: 2   DSCPSIKNILLLDSEGKRVAVKYYSDDWATNGAKEAFEKSVFTKTQKTNARTEAEIAMFE 61
           DSCP +KNILLLDSEGKRVAVKYYSDDWATN +K AFEK VF+KT KTNARTEAEI + E
Sbjct: 6   DSCPLVKNILLLDSEGKRVAVKYYSDDWATNASKLAFEKYVFSKTSKTNARTEAEITLLE 65

Query: 62  NNLVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 121
           +N+VVYKF QDLHFFVTGGE+ENEL+L+SVLQGFFDAV LLLR NVEK EALENLDLI L
Sbjct: 66  SNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKMEALENLDLIFL 125

Query: 122 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLL 177
           CLDE++D G++LETDANVIAGKVA  S ++   LSEQT++QALATAREHLARSLL
Sbjct: 126 CLDEMVDQGMVLETDANVIAGKVAMQSAEASGSLSEQTLTQALATAREHLARSLL 180

[Close]

BLAST of Sed0021080.1 vs. ExPASy Swiss-Prot
Match: Q84LG4 (Coatomer subunit zeta-2 OS=Arabidopsis thaliana OX=3702 GN=At3g09800 PE=2 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 2.9e-72
Identity = 137/175 (78.29%), Postives = 154/175 (88.00%), Query Frame = 0


Query: 2   DSCPSIKNILLLDSEGKRVAVKYYSDDWATNGAKEAFEKSVFTKTQKTNARTEAEIAMFE 61
           DSCP +KNILLLDSEGKRVAVKYYSDDW TN AK +FEK VF+KT KTNARTEAEI + +
Sbjct: 4   DSCPLVKNILLLDSEGKRVAVKYYSDDWPTNAAKLSFEKYVFSKTSKTNARTEAEITLLD 63

Query: 62  NNLVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 121
           +N++VYKF QDLHFFVTGGE+ENELILASVLQGFFDAV LLLR NVEK EALENLDLI L
Sbjct: 64  SNIIVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEKMEALENLDLIFL 123

Query: 122 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLL 177
           CLDE++D G++LETD NVIAGKVA  S ++   LSEQT++QALATAREHLARSLL
Sbjct: 124 CLDEMVDQGVVLETDPNVIAGKVAMQSTEASGSLSEQTLTQALATAREHLARSLL 178

[Close]

BLAST of Sed0021080.1 vs. ExPASy Swiss-Prot
Match: Q9MAX5 (Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPZ1 PE=2 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.6e-68
Identity = 130/176 (73.86%), Postives = 151/176 (85.80%), Query Frame = 0


Query: 1   MDSCPSIKNILLLDSEGKRVAVKYYSDDWATNGAKEAFEKSVFTKTQKTNARTEAEIAMF 60
           M+SCPS+KNILLLDSEGKRVAVKYY+DDW T  AK AFEKSVF KTQK  A  EAEI MF
Sbjct: 1   MESCPSVKNILLLDSEGKRVAVKYYTDDWPTLSAKLAFEKSVFVKTQKATAGAEAEIVMF 60

Query: 61  ENNLVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120
           + ++VVYKF+QDLHFFVTGGE+ENELILASVLQGF DAV ++LR NV+K+ ALENLDLIL
Sbjct: 61  DGHIVVYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDIILRNNVDKRTALENLDLIL 120

Query: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLL 177
           LCLDEI+DGGI+LET+ +VIA KV++H I+    L+EQTI QAL TAREHL +SLL
Sbjct: 121 LCLDEIVDGGIVLETEGSVIAEKVSAHGIEGATSLAEQTIVQALTTAREHLTKSLL 176

[Close]

BLAST of Sed0021080.1 vs. ExPASy TrEMBL
Match: A0A6J1K0K6 (Coatomer subunit zeta OS=Cucurbita maxima OX=3661 GN=LOC111490490 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.3e-87
Identity = 171/177 (96.61%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 1   MDSCPSIKNILLLDSEGKRVAVKYYSDDWATNGAKEAFEKSVFTKTQKTNARTEAEIAMF 60
           M+SCPSIKNILLLDSEGKRVAVKYYSDDW TN  KEAFEK+VFTKTQKTNARTEAEIAMF
Sbjct: 1   MESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSTKEAFEKAVFTKTQKTNARTEAEIAMF 60

Query: 61  ENNLVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120
           ENN+VVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLIL
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120

Query: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK
Sbjct: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 177

[Close]

BLAST of Sed0021080.1 vs. ExPASy TrEMBL
Match: A0A6J1GRN0 (Coatomer subunit zeta OS=Cucurbita moschata OX=3662 GN=LOC111456877 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.3e-87
Identity = 171/177 (96.61%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 1   MDSCPSIKNILLLDSEGKRVAVKYYSDDWATNGAKEAFEKSVFTKTQKTNARTEAEIAMF 60
           M+SCPSIKNILLLDSEGKRVAVKYYSDDW TN  KEAFEK+VFTKTQKTNARTEAEIAMF
Sbjct: 1   MESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSTKEAFEKAVFTKTQKTNARTEAEIAMF 60

Query: 61  ENNLVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120
           ENN+VVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLIL
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120

Query: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK
Sbjct: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 177

[Close]

BLAST of Sed0021080.1 vs. ExPASy TrEMBL
Match: A0A6J1CEY0 (Coatomer subunit zeta OS=Momordica charantia OX=3673 GN=LOC111010622 PE=3 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 4.3e-87
Identity = 170/177 (96.05%), Postives = 175/177 (98.87%), Query Frame = 0


Query: 1   MDSCPSIKNILLLDSEGKRVAVKYYSDDWATNGAKEAFEKSVFTKTQKTNARTEAEIAMF 60
           M+SCPSIKNILLLDSEGKRVAVKYYSDDW TN AKEAFEK+VFTKTQKTNARTEAEIAMF
Sbjct: 1   MESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMF 60

Query: 61  ENNLVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120
           ENN+VVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVG+LLRGNVEKKEALENLDLIL
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL 120

Query: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           LCLDEIIDGGIILETDANVIAGKVASHSID+GAPLSEQTISQALATAREHLARSLLK
Sbjct: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDTGAPLSEQTISQALATAREHLARSLLK 177

[Close]

BLAST of Sed0021080.1 vs. ExPASy TrEMBL
Match: A0A6J1K2M3 (Coatomer subunit zeta OS=Cucurbita maxima OX=3661 GN=LOC111490490 PE=3 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.3e-86
Identity = 170/176 (96.59%), Postives = 173/176 (98.30%), Query Frame = 0


Query: 2   DSCPSIKNILLLDSEGKRVAVKYYSDDWATNGAKEAFEKSVFTKTQKTNARTEAEIAMFE 61
           +SCPSIKNILLLDSEGKRVAVKYYSDDW TN  KEAFEK+VFTKTQKTNARTEAEIAMFE
Sbjct: 3   ESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSTKEAFEKAVFTKTQKTNARTEAEIAMFE 62

Query: 62  NNLVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 121
           NN+VVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLILL
Sbjct: 63  NNIVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 122

Query: 122 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK
Sbjct: 123 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178

[Close]

BLAST of Sed0021080.1 vs. ExPASy TrEMBL
Match: A0A6J1GRL4 (Coatomer subunit zeta OS=Cucurbita moschata OX=3662 GN=LOC111456877 PE=3 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.3e-86
Identity = 170/176 (96.59%), Postives = 173/176 (98.30%), Query Frame = 0


Query: 2   DSCPSIKNILLLDSEGKRVAVKYYSDDWATNGAKEAFEKSVFTKTQKTNARTEAEIAMFE 61
           +SCPSIKNILLLDSEGKRVAVKYYSDDW TN  KEAFEK+VFTKTQKTNARTEAEIAMFE
Sbjct: 3   ESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSTKEAFEKAVFTKTQKTNARTEAEIAMFE 62

Query: 62  NNLVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 121
           NN+VVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLILL
Sbjct: 63  NNIVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 122

Query: 122 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK
Sbjct: 123 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178

[Close]

BLAST of Sed0021080.1 vs. TAIR 10
Match: AT1G60970.1 (SNARE-like superfamily protein )

HSP 1 Score: 277.3 bits (708), Expect = 8.4e-75
Identity = 142/177 (80.23%), Postives = 155/177 (87.57%), Query Frame = 0


Query: 1   MDSCPSIKNILLLDSEGKRVAVKYYSDDWATNGAKEAFEKSVFTKTQKTNARTEAEIAMF 60
           M+  P +KNILLLDSEGKRVAVKYYSDDW TN A+EAFEKSVFTKTQKTNARTE E+   
Sbjct: 1   MELPPKVKNILLLDSEGKRVAVKYYSDDWPTNSAQEAFEKSVFTKTQKTNARTEVEVTAL 60

Query: 61  ENNLVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLIL 120
           ENN+VVYKFVQDLHFFVTGGE+ENELILASVL+G FDAV LLLR NV+K+EAL+NLDLI 
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKREALDNLDLIF 120

Query: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178
           L  DEIIDGGI+LETDANVIAGK   +S D  APLSEQTISQALATAREHL RSL+K
Sbjct: 121 LSFDEIIDGGIVLETDANVIAGKAGINSTDPNAPLSEQTISQALATAREHLTRSLMK 177

[Close]

BLAST of Sed0021080.1 vs. TAIR 10
Match: AT4G08520.1 (SNARE-like superfamily protein )

HSP 1 Score: 275.8 bits (704), Expect = 2.4e-74
Identity = 139/175 (79.43%), Postives = 156/175 (89.14%), Query Frame = 0


Query: 2   DSCPSIKNILLLDSEGKRVAVKYYSDDWATNGAKEAFEKSVFTKTQKTNARTEAEIAMFE 61
           DSCP +KNILLLDSEGKRVAVKYYSDDWATN +K AFEK VF+KT KTNARTEAEI + E
Sbjct: 6   DSCPLVKNILLLDSEGKRVAVKYYSDDWATNASKLAFEKYVFSKTSKTNARTEAEITLLE 65

Query: 62  NNLVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 121
           +N+VVYKF QDLHFFVTGGE+ENEL+L+SVLQGFFDAV LLLR NVEK EALENLDLI L
Sbjct: 66  SNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKMEALENLDLIFL 125

Query: 122 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLL 177
           CLDE++D G++LETDANVIAGKVA  S ++   LSEQT++QALATAREHLARSLL
Sbjct: 126 CLDEMVDQGMVLETDANVIAGKVAMQSAEASGSLSEQTLTQALATAREHLARSLL 180

[Close]

BLAST of Sed0021080.1 vs. TAIR 10
Match: AT3G09800.1 (SNARE-like superfamily protein )

HSP 1 Score: 270.4 bits (690), Expect = 1.0e-72
Identity = 136/175 (77.71%), Postives = 153/175 (87.43%), Query Frame = 0


Query: 2   DSCPSIKNILLLDSEGKRVAVKYYSDDWATNGAKEAFEKSVFTKTQKTNARTEAEIAMFE 61
           DSCP +K ILLLDSEGKRVAVKYYSDDW TN AK +FEK VF+KT KTNARTEAEI + +
Sbjct: 4   DSCPLVKKILLLDSEGKRVAVKYYSDDWPTNAAKLSFEKYVFSKTSKTNARTEAEITLLD 63

Query: 62  NNLVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGLLLRGNVEKKEALENLDLILL 121
           +N++VYKF QDLHFFVTGGE+ENELILASVLQGFFDAV LLLR NVEK EALENLDLI L
Sbjct: 64  SNIIVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEKMEALENLDLIFL 123

Query: 122 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLL 177
           CLDE++D G++LETD NVIAGKVA  S ++   LSEQT++QALATAREHLARSLL
Sbjct: 124 CLDEMVDQGVVLETDPNVIAGKVAMQSTEASGSLSEQTLTQALATAREHLARSLL 178

The following BLAST results are available for this feature:

BLAST of Sed0021080.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023542943.1	2.4e-87	97.18	coatomer subunit zeta-1-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022954697.1	6.9e-87	96.61	coatomer subunit zeta-2-like isoform X2 [Cucurbita moschata] >XP_022994906.1 coa...	[more]
XP_022139792.1	9.0e-87	96.05	coatomer subunit zeta-1-like [Momordica charantia]	[more]
XP_023542942.1	9.0e-87	97.16	coatomer subunit zeta-2-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022954696.1	2.6e-86	96.59	coatomer subunit zeta-2-like isoform X1 [Cucurbita moschata] >XP_022994905.1 coa...	[more]

BLAST of Sed0021080.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6Z844	2.8e-75	80.11	Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica OX=39947 GN=COPZ2 PE=2 S...	[more]
Q940S5	1.2e-73	80.23	Coatomer subunit zeta-1 OS=Arabidopsis thaliana OX=3702 GN=At1g60970 PE=2 SV=1	[more]
Q8H1F4	3.4e-73	79.43	Coatomer subunit zeta-3 OS=Arabidopsis thaliana OX=3702 GN=At4g08520 PE=2 SV=1	[more]
Q84LG4	2.9e-72	78.29	Coatomer subunit zeta-2 OS=Arabidopsis thaliana OX=3702 GN=At3g09800 PE=2 SV=1	[more]
Q9MAX5	2.6e-68	73.86	Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPZ1 PE=2 S...	[more]

BLAST of Sed0021080.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K0K6	3.3e-87	96.61	Coatomer subunit zeta OS=Cucurbita maxima OX=3661 GN=LOC111490490 PE=3 SV=1	[more]
A0A6J1GRN0	3.3e-87	96.61	Coatomer subunit zeta OS=Cucurbita moschata OX=3662 GN=LOC111456877 PE=3 SV=1	[more]
A0A6J1CEY0	4.3e-87	96.05	Coatomer subunit zeta OS=Momordica charantia OX=3673 GN=LOC111010622 PE=3 SV=1	[more]
A0A6J1K2M3	1.3e-86	96.59	Coatomer subunit zeta OS=Cucurbita maxima OX=3661 GN=LOC111490490 PE=3 SV=1	[more]
A0A6J1GRL4	1.3e-86	96.59	Coatomer subunit zeta OS=Cucurbita moschata OX=3662 GN=LOC111456877 PE=3 SV=1	[more]

BLAST of Sed0021080.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60970.1	8.4e-75	80.23	SNARE-like superfamily protein	[more]
AT4G08520.1	2.4e-74	79.43	SNARE-like superfamily protein	[more]
AT3G09800.1	1.0e-72	77.71	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 7..145 e-value: 2.5E-22 score: 79.3
None	No IPR available	GENE3D	3.30.450.60		coord: 2..147 e-value: 1.0E-42 score: 147.5
None	No IPR available	PANTHER	PTHR11043:SF30	COATOMER SUBUNIT ZETA-2-LIKE	coord: 1..177
None	No IPR available	CDD	cd14829	Zeta-COP	coord: 8..143 e-value: 7.8033E-73 score: 213.562
IPR039652	Coatomer subunit zeta	PANTHER	PTHR11043	ZETA-COAT PROTEIN	coord: 1..177
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 7..148

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0021080	Sed0021080	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0021080.1-exon	Sed0021080.1-exon-LG01:16567804..16568224	exon
Sed0021080.1-exon	Sed0021080.1-exon-LG01:16568310..16568394	exon
Sed0021080.1-exon	Sed0021080.1-exon-LG01:16569085..16569162	exon
Sed0021080.1-exon	Sed0021080.1-exon-LG01:16569254..16569401	exon
Sed0021080.1-exon	Sed0021080.1-exon-LG01:16569730..16569889	exon
Sed0021080.1-exon	Sed0021080.1-exon-LG01:16570534..16570661	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0021080.1-three_prime_utr	Sed0021080.1-three_prime_utr-LG01:16567804..16568164	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0021080.1-cds	Sed0021080.1-cds-LG01:16568165..16568224	CDS
Sed0021080.1-cds	Sed0021080.1-cds-LG01:16568310..16568394	CDS
Sed0021080.1-cds	Sed0021080.1-cds-LG01:16569085..16569162	CDS
Sed0021080.1-cds	Sed0021080.1-cds-LG01:16569254..16569401	CDS
Sed0021080.1-cds	Sed0021080.1-cds-LG01:16569730..16569889	CDS
Sed0021080.1-cds	Sed0021080.1-cds-LG01:16570534..16570536	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0021080.1-five_prime_utr	Sed0021080.1-five_prime_utr-LG01:16570537..16570661	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0021080.1	Sed0021080.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
cellular_component	GO:0030126	COPI vesicle coat
cellular_component	GO:0000139	Golgi membrane