Sed0020782.1 (mRNA) Chayote v1

Overview


Name	Sed0020782.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Protein TIC 214
Location	LG09: 32025207 .. 32026157 (-)
Sequence length	318
RNA-Seq Expression	Sed0020782.1
Synteny	Sed0020782.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACATTCAATGTTTTTGGGCATTATTTGGAAATTGCATTTATCCGTAGATTCATATAATTTAAAGTTTTTAAATACGGTTAAGAAACTCCGTTATTTATACTAAGGACGGTGGTCTGATGGTTTTGTTGTTTGATGGTAATCCAGTTCAACACCATGGTCACGGATTCGATCTTAAAAATCGATATTTAACGAGAGTTTGTGTTCGTCTCCCTTCAACTTGCACTAAAAATAAAAGAAACTCCATTATTTATAAGAAAATCTTTTAAAATTTGATATTTTGTCTATTTTATATATTTGAGTTAAACCAATGGAAAGTAGAAGGTTTTGGTCATTTGGCCATTATTTTTTAAAGTTTAATTTGGTATTAGATCAACTTCTCTAAATTAGAGTTTAGCTATTCTACAACTCATGTAGCGTAGTTTTGTGTACAACTATTCATGAATTTCAGACTAACTCGTGTGGGTGGTTGTGCCTTGTGTTGTGCGGCTTAGAGGCAACATAATGGTCTTGTCTGAACGTGTTCGACGTATGTGTTTCATAAGTAGTGTGCCATAAGTCATATGCTAGTTGATTTTTTTTGCCGAGTGTGTGTGACGTGCGATGTGTAATGACTCAGGTTTTTATGAAAATTTTATGCAATCTCACTATGATGTAATTTAGTTATTAAATGCAGTCCACCCGTCTACTATTTAGGTAAAATACCGTCACCCATTCTTACTAAGAAACTAAAAGAAACCTTAGAAACGGAGCAAAGGGGGGAAGCGAGAAAGAAATAGATGTAGCAATAGAAACCACTTCCGAAACGAAGAGGACTAAACAGGAACAGGAGGGATCCACCGAAGAAGATACTTCTCCTTCCATTTTTTCAAAAGAAAAGGAGGATCCGGACAAAATTGATGAAACGGAAGAGATTCGAGTGAATGAAAAGAAACAAAACAAAGTATGA

mRNA sequence

ATGAAACATTCAATGTTTTTGGGCATTATTTGGAAATTGCATTTATCCGTAGATTCATATAATTTAAAGTTTTTAAATACGGTTAAGAAACTCCAAACTAAAAGAAACCTTAGAAACGGAGCAAAGGGGGGAAGCGAGAAAGAAATAGATGTAGCAATAGAAACCACTTCCGAAACGAAGAGGACTAAACAGGAACAGGAGGGATCCACCGAAGAAGATACTTCTCCTTCCATTTTTTCAAAAGAAAAGGAGGATCCGGACAAAATTGATGAAACGGAAGAGATTCGAGTGAATGAAAAGAAACAAAACAAAGTATGA

Coding sequence (CDS)

ATGAAACATTCAATGTTTTTGGGCATTATTTGGAAATTGCATTTATCCGTAGATTCATATAATTTAAAGTTTTTAAATACGGTTAAGAAACTCCAAACTAAAAGAAACCTTAGAAACGGAGCAAAGGGGGGAAGCGAGAAAGAAATAGATGTAGCAATAGAAACCACTTCCGAAACGAAGAGGACTAAACAGGAACAGGAGGGATCCACCGAAGAAGATACTTCTCCTTCCATTTTTTCAAAAGAAAAGGAGGATCCGGACAAAATTGATGAAACGGAAGAGATTCGAGTGAATGAAAAGAAACAAAACAAAGTATGA

Protein sequence

MKHSMFLGIIWKLHLSVDSYNLKFLNTVKKLQTKRNLRNGAKGGSEKEIDVAIETTSETKRTKQEQEGSTEEDTSPSIFSKEKEDPDKIDETEEIRVNEKKQNKV

Homology

[Close]

BLAST of Sed0020782.1 vs. NCBI nr
Match: QKX48533.1 (hypothetical chloroplast RF19 [Luffa acutangula])

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-15
Identity = 55/78 (70.51%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 27  TVKKLQTKRNLRNGAKGGSEKEIDVAIETTSETKRTKQEQEGSTEEDTSPSIFSKEKEDP 86
           T K  +T      G +G SE+E DV IETTSETK TKQEQEGSTEEDTSPS+FS+EKEDP
Sbjct: 243 TKKLKETSETEERGERGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDP 302

Query: 87  DKIDETEEIRVNEKKQNK 105
           DKIDETEEIRVN K++ K
Sbjct: 303 DKIDETEEIRVNGKEKTK 320

[Close]

BLAST of Sed0020782.1 vs. NCBI nr
Match: YP_010131140.1 (hypothetical protein RF1 [Benincasa hispida] >QPZ75788.1 hypothetical protein RF1 [Benincasa hispida] >QSQ72369.1 Ycf1 protein [Benincasa hispida])

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-14
Identity = 54/78 (69.23%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 27  TVKKLQTKRNLRNGAKGGSEKEIDVAIETTSETKRTKQEQEGSTEEDTSPSIFSKEKEDP 86
           T K  +T        +G SE+E DV IETTSETK TKQEQEGSTEEDTSPS+FS+EKEDP
Sbjct: 243 TKKLKETSETEETEERGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDP 302

Query: 87  DKIDETEEIRVNEKKQNK 105
           DKIDETEEIRVN K++ K
Sbjct: 303 DKIDETEEIRVNGKEKTK 320

[Close]

BLAST of Sed0020782.1 vs. NCBI nr
Match: QSQ72357.1 (Ycf1 protein [Benincasa hispida])

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-14
Identity = 54/78 (69.23%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 27  TVKKLQTKRNLRNGAKGGSEKEIDVAIETTSETKRTKQEQEGSTEEDTSPSIFSKEKEDP 86
           T K  +T        +G SE+E DV IETTSETK TKQEQEGSTEEDTSPS+FS+EKEDP
Sbjct: 243 TKKLKETSETEETEERGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDP 302

Query: 87  DKIDETEEIRVNEKKQNK 105
           DKIDETEEIRVN K++ K
Sbjct: 303 DKIDETEEIRVNGKEKTK 320

[Close]

BLAST of Sed0020782.1 vs. NCBI nr
Match: QJA16202.1 (Ycf1 80 [Siraitia grosvenorii])

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-14
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 32  QTKRNLRNGAKGGSEKEIDVAIETTSETKRTKQEQEGSTEEDTSPSIFSKEKEDPDKIDE 91
           +T++      +G SE+E DV IETTSETK TKQEQEGSTEEDTSPS+FS+EKEDPDKIDE
Sbjct: 245 ETEKTSETEERGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDE 304

Query: 92  TEEIRVNEKKQN 104
           TEEIRVN K+++
Sbjct: 305 TEEIRVNGKEKD 316

[Close]

BLAST of Sed0020782.1 vs. NCBI nr
Match: QWQ50148.1 (hypothetical protein RF1 [Cyclanthera pedata])

HSP 1 Score: 89.0 bits (219), Expect = 2.7e-14
Identity = 55/76 (72.37%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 29  KKLQTKRNLRNGAKGGSEKEIDVAIETTSETKRTKQEQEGSTEEDTSPSIFSKEKEDPDK 88
           KKL  K       +G S+KE DV IETTSETK TKQEQEGSTEEDTSPS+FS+EKEDPDK
Sbjct: 244 KKL--KETSETEQRGESDKETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDK 303

Query: 89  IDETEEIRVNEKKQNK 105
           IDETEEIRVN K++ K
Sbjct: 304 IDETEEIRVNGKEKTK 317

[Close]

BLAST of Sed0020782.1 vs. ExPASy Swiss-Prot
Match: Q4VZL0 (Protein TIC 214 OS=Cucumis sativus OX=3659 GN=TIC214 PE=3 SV=2)

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-15
Identity = 53/99 (53.54%), Postives = 68/99 (68.69%), Query Frame = 0


Query: 4   SMFLGIIWKLHLSVDSYNLKFLNTVKKLQTKRNLRNGAKGGSEKEIDVAIETTSETKRTK 63
           S+ L I W  +L       +  + +   +T +         SE+E DV IETTSETK TK
Sbjct: 223 SIILFITWVYYLG------RIPSPIPLKETSKTSETAETEESEEETDVEIETTSETKGTK 282

Query: 64  QEQEGSTEEDTSPSIFSKEKEDPDKIDETEEIRVNEKKQ 103
           QEQEGSTEEDTSPS+FS+EKEDPDKIDETEEIR+++K++
Sbjct: 283 QEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIRIDKKEK 315

[Close]

BLAST of Sed0020782.1 vs. ExPASy Swiss-Prot
Match: Q0G9Q4 (Protein TIC 214 OS=Daucus carota OX=4039 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-15
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 45  SEKEIDVAIETTSETKRTKQEQEGSTEEDTSPSIFSKEKEDPDKIDETEEIRVNEKKQNK 104
           SE+E DV IET SETK TKQEQEGSTEED SPS+FS+EKEDPDKIDETEEIRVN K++ K
Sbjct: 256 SEEETDVEIETASETKGTKQEQEGSTEEDPSPSLFSEEKEDPDKIDETEEIRVNGKEKTK 315

[Close]

BLAST of Sed0020782.1 vs. ExPASy Swiss-Prot
Match: Q68RU8 (Protein TIC 214 OS=Panax ginseng OX=4054 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-15
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 42  KGGSEKEIDVAIETTSETKRTKQEQEGSTEEDTSPSIFSKEKEDPDKIDETEEIRVNEKK 101
           +G SE+E DV IET SETK  KQEQEGSTEED SPS+FS+EKEDPDKIDETEEIRVN K+
Sbjct: 315 RGESEEETDVEIETASETKGAKQEQEGSTEEDPSPSLFSEEKEDPDKIDETEEIRVNGKE 374

Query: 102 QNK 105
           + K
Sbjct: 375 KTK 377

[Close]

BLAST of Sed0020782.1 vs. ExPASy Swiss-Prot
Match: Q09FY8 (Protein TIC 214 OS=Platanus occidentalis OX=4403 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.3e-15
Identity = 49/79 (62.03%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 26  NTVKKLQTKRNLRNGAKGGSEKEIDVAIETTSETKRTKQEQEGSTEEDTSPSIFSKEKED 85
           +T+   + K   +    G SE+E DV IETTSETK TK+EQEGSTEED SPS++S+EKED
Sbjct: 248 STLVTKKMKETSKMKQMGQSEEETDVEIETTSETKETKEEQEGSTEEDPSPSLYSEEKED 307

Query: 86  PDKIDETEEIRVNEKKQNK 105
           PDKIDETEEIRVN  +++K
Sbjct: 308 PDKIDETEEIRVNGNEKSK 326

[Close]

BLAST of Sed0020782.1 vs. ExPASy Swiss-Prot
Match: Q0ZIW0 (Protein TIC 214 OS=Vitis vinifera OX=29760 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.4e-15
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 42  KGGSEKEIDVAIETTSETKRTKQEQEGSTEEDTSPSIFSKEKEDPDKIDETEEIRVNEKK 101
           +G SE+E DV IE TSETK TKQEQE STEED SPS+FS+EKEDPDKIDETEEIRVN K+
Sbjct: 258 RGESEEETDVEIERTSETKGTKQEQERSTEEDPSPSLFSEEKEDPDKIDETEEIRVNGKE 317

Query: 102 QNK 105
           + K
Sbjct: 318 KTK 320

[Close]

BLAST of Sed0020782.1 vs. ExPASy TrEMBL
Match: A0A7D5C1X1 (Protein TIC 214 OS=Luffa acutangula OX=56866 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.9e-16
Identity = 55/78 (70.51%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 27  TVKKLQTKRNLRNGAKGGSEKEIDVAIETTSETKRTKQEQEGSTEEDTSPSIFSKEKEDP 86
           T K  +T      G +G SE+E DV IETTSETK TKQEQEGSTEEDTSPS+FS+EKEDP
Sbjct: 243 TKKLKETSETEERGERGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDP 302

Query: 87  DKIDETEEIRVNEKKQNK 105
           DKIDETEEIRVN K++ K
Sbjct: 303 DKIDETEEIRVNGKEKTK 320

[Close]

BLAST of Sed0020782.1 vs. ExPASy TrEMBL
Match: A0A7T3QP51 (Uncharacterized protein OS=Benincasa hispida OX=102211 GN=ycf1 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.9e-15
Identity = 54/78 (69.23%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 27  TVKKLQTKRNLRNGAKGGSEKEIDVAIETTSETKRTKQEQEGSTEEDTSPSIFSKEKEDP 86
           T K  +T        +G SE+E DV IETTSETK TKQEQEGSTEEDTSPS+FS+EKEDP
Sbjct: 243 TKKLKETSETEETEERGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDP 302

Query: 87  DKIDETEEIRVNEKKQNK 105
           DKIDETEEIRVN K++ K
Sbjct: 303 DKIDETEEIRVNGKEKTK 320

[Close]

BLAST of Sed0020782.1 vs. ExPASy TrEMBL
Match: A0A6H1XL12 (Protein TIC 214 OS=Siraitia grosvenorii OX=190515 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.0e-14
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 32  QTKRNLRNGAKGGSEKEIDVAIETTSETKRTKQEQEGSTEEDTSPSIFSKEKEDPDKIDE 91
           +T++      +G SE+E DV IETTSETK TKQEQEGSTEEDTSPS+FS+EKEDPDKIDE
Sbjct: 245 ETEKTSETEERGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDE 304

Query: 92  TEEIRVNEKKQN 104
           TEEIRVN K+++
Sbjct: 305 TEEIRVNGKEKD 316

[Close]

BLAST of Sed0020782.1 vs. ExPASy TrEMBL
Match: A0A6H0ER70 (Protein TIC 214 OS=Cyclanthera pedata OX=198836 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-14
Identity = 55/76 (72.37%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 29  KKLQTKRNLRNGAKGGSEKEIDVAIETTSETKRTKQEQEGSTEEDTSPSIFSKEKEDPDK 88
           KKL  K       +G S+KE DV IETTSETK TKQEQEGSTEEDTSPS+FS+EKEDPDK
Sbjct: 245 KKL--KETSETEQRGESDKETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDK 304

Query: 89  IDETEEIRVNEKKQNK 105
           IDETEEIRVN K++ K
Sbjct: 305 IDETEEIRVNGKEKTK 318

[Close]

BLAST of Sed0020782.1 vs. ExPASy TrEMBL
Match: A0A6H0EU45 (Protein TIC 214 OS=Ampelosycios humblotii OX=386639 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-14
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 42  KGGSEKEIDVAIETTSETKRTKQEQEGSTEEDTSPSIFSKEKEDPDKIDETEEIRVNEKK 101
           +G SE+E DV IETTSETK TKQEQEGSTEEDTSPS+FS+EKEDPDKIDETEEIRVN K+
Sbjct: 255 RGESEEETDVEIETTSETKGTKQEQEGSTEEDTSPSLFSEEKEDPDKIDETEEIRVNGKE 314

Query: 102 QNK 105
           + K
Sbjct: 315 KTK 317

[Close]

BLAST of Sed0020782.1 vs. TAIR 10
Match: ATCG01130.1 (Ycf1 protein )

HSP 1 Score: 47.8 bits (112), Expect = 6.4e-06
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 53  IETTSETKRTKQEQEGSTEEDTSPSIFSKEKEDPDKIDETEEIRVNEK-KQNK 105
           ++ TSET  TKQ+QE STEE   PS+FS+E ED DKIDE EEIRVN K K NK
Sbjct: 252 LKGTSETGGTKQDQEVSTEEAPFPSLFSEEGEDLDKIDEMEEIRVNGKDKINK 304

[Close]

BLAST of Sed0020782.1 vs. TAIR 10
Match: ATCG01000.1 (Ycf1 protein )

HSP 1 Score: 47.8 bits (112), Expect = 6.4e-06
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 53  IETTSETKRTKQEQEGSTEEDTSPSIFSKEKEDPDKIDETEEIRVNEK-KQNK 105
           ++ TSET  TKQ+QE STEE   PS+FS+E ED DKIDE EEIRVN K K NK
Sbjct: 252 LKGTSETGGTKQDQEVSTEEAPFPSLFSEEGEDLDKIDEMEEIRVNGKDKINK 304

The following BLAST results are available for this feature:

BLAST of Sed0020782.1 vs. NCBI nr


Match Name	E-value	Identity	Description
QKX48533.1	1.4e-15	70.51	hypothetical chloroplast RF19 [Luffa acutangula]	[more]
YP_010131140.1	1.2e-14	69.23	hypothetical protein RF1 [Benincasa hispida] >QPZ75788.1 hypothetical protein RF...	[more]
QSQ72357.1	1.2e-14	69.23	Ycf1 protein [Benincasa hispida]	[more]
QJA16202.1	2.1e-14	70.83	Ycf1 80 [Siraitia grosvenorii]	[more]
QWQ50148.1	2.7e-14	72.37	hypothetical protein RF1 [Cyclanthera pedata]	[more]

BLAST of Sed0020782.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZL0	1.1e-15	53.54	Protein TIC 214 OS=Cucumis sativus OX=3659 GN=TIC214 PE=3 SV=2	[more]
Q0G9Q4	2.5e-15	80.00	Protein TIC 214 OS=Daucus carota OX=4039 GN=TIC214 PE=3 SV=1	[more]
Q68RU8	2.5e-15	76.19	Protein TIC 214 OS=Panax ginseng OX=4054 GN=TIC214 PE=3 SV=1	[more]
Q09FY8	3.3e-15	62.03	Protein TIC 214 OS=Platanus occidentalis OX=4403 GN=TIC214 PE=3 SV=1	[more]
Q0ZIW0	7.4e-15	76.19	Protein TIC 214 OS=Vitis vinifera OX=29760 GN=TIC214 PE=3 SV=1	[more]

BLAST of Sed0020782.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7D5C1X1	6.9e-16	70.51	Protein TIC 214 OS=Luffa acutangula OX=56866 GN=ycf1 PE=3 SV=1	[more]
A0A7T3QP51	5.9e-15	69.23	Uncharacterized protein OS=Benincasa hispida OX=102211 GN=ycf1 PE=4 SV=1	[more]
A0A6H1XL12	1.0e-14	70.83	Protein TIC 214 OS=Siraitia grosvenorii OX=190515 GN=ycf1 PE=3 SV=1	[more]
A0A6H0ER70	1.3e-14	72.37	Protein TIC 214 OS=Cyclanthera pedata OX=198836 GN=ycf1 PE=3 SV=1	[more]
A0A6H0EU45	1.3e-14	80.95	Protein TIC 214 OS=Ampelosycios humblotii OX=386639 GN=ycf1 PE=3 SV=1	[more]

BLAST of Sed0020782.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01130.1	6.4e-06	66.04	Ycf1 protein	[more]
ATCG01000.1	6.4e-06	66.04	Ycf1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008896	Protein TIC214	PFAM	PF05758	Ycf1	coord: 29..103 e-value: 6.3E-19 score: 67.4
IPR008896	Protein TIC214	PANTHER	PTHR33163	PROTEIN TIC 214-RELATED	coord: 40..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..105
None	No IPR available	PANTHER	PTHR33163:SF13	PROTEIN TIC 214-RELATED	coord: 40..103

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0020782	Sed0020782	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0020782.1-cds	Sed0020782.1-cds-LG09:32025207..32025430	CDS
Sed0020782.1-cds	Sed0020782.1-cds-LG09:32026064..32026157	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0020782.1-exon	Sed0020782.1-exon-LG09:32025207..32025430	exon
Sed0020782.1-exon	Sed0020782.1-exon-LG09:32026064..32026157	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0020782.1	Sed0020782.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009706	chloroplast inner membrane