Sed0020450.1 (mRNA) Chayote v1

Overview


Name	Sed0020450.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	late embryogenesis abundant protein 1
Location	LG09: 38765707 .. 38767155 (-)
Sequence length	297
RNA-Seq Expression	Sed0020450.1
Synteny	Sed0020450.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCCAACAAGAACTTAGACACCAGAGTGATGAGATGGTTGCTGAAGCTCAGGTAATTTACATTTTCTTTTGTTTTAATTCTCTCGAACGAACAAAATCGTTATCAAAAAGAGCCGTAGGATCATTGTAACATGTATTATATATTTCAATGTGGTAAATTAATAACTGTTTTTAATTATTTTTTATCATGATTAGGTGAAGAGGGAGGAGATTTTGAACAAGGCATCTACAAATGAGCAATCAGCTGCTCAAACTGCCACTGAACTCAAGGACCAAGCTGCAAATTTCATTCAACAGGCAAAGCTTTTTTTTCCTTTTATTTTTTTTTCTTTTGGGGTAAGATTATGAAACTTGAAACAATAAACAAATGGGTAATTTGCAAAATTTTAAGTTTTTTTTTTTTTTTTTGTCTAAACTTTAAAAAATTTAGTCTAAACTTGTAGAATAGACAAATGGCATTTATTGATTTTGTTAAGAGCAATATTTGGATCTTTAAACTTTCCTTGTGGTGTATTTATGGGCTAAGAAGCATGGATATGGACACGATACGAACATATATTAAAAAAATACAATACACTGCACAGCTACATGGAAAACAAGTTATTTATTATGCTATTCTATTAAAAAAATTAAATCCAAAATATTTTAGGTATAAAAAATAATTCAAACAAGGATGAACATGAAGATTGAATCAGTAATTGAATTTAACCTAAATAGTTAGTTATATGAGTCCATTTAAATTTAATAAAAAATAAAATTTCACAATTCTTTTGGTGCCTAAAAAATAATAATGAAGGAGGATACAAAATTTCAAATGTTATTCGAAAAGTGTCTAGACCTATCGATATAGGACACAAGTCCTATACAAATATGTTGTCAAAGTAGAAGTGTATGTGCCTCCTAGTTTATGAGTACACTTCATTTACTTTTAAAAATTTTTTTTTCTTTTTTGGGTTTGAAAAGTAAAATAAAAATAAATAGATTATGACCATAAATGTAGAAGTAAAAAGGGTTTAAGGACAAAGTATTACTCTTGTGAAAAATAATATTTTTATCACATTTTCTTTTGATAAGTGTTTTTTTAAAAAAAAGTATTAAATTGAGGTATGGAACTATAAACCTTACAAAGAGGATATGCTCTCAAATAAATGAGAGCCAAGAACCAAATATCGATTTCAAAGATAGAAAACTATGATGTTGAATTGGATTTCCACCAAACAATGAACCATCGTGTCATTGAGATATATCATTATTGTTTTTTTTTTCAAGTGATTTATTTATTTTTGGTGAAAAATGCATTAAATAGACTGGAGAGCAAATGAAGAACATGGCACAAGGAGCAGCTGAGGCAGTGAAGAATACACTTGGAATGAACAATGAGAACACTTCAAACCCAGCAGCCTCTACCAACAACCCAAACATGGGCCCATCCAATAGAGTTTAA

mRNA sequence

ATGGCAAGCCAACAAGAACTTAGACACCAGAGTGATGAGATGGTTGCTGAAGCTCAGGTGAAGAGGGAGGAGATTTTGAACAAGGCATCTACAAATGAGCAATCAGCTGCTCAAACTGCCACTGAACTCAAGGACCAAGCTGCAAATTTCATTCAACAGACTGGAGAGCAAATGAAGAACATGGCACAAGGAGCAGCTGAGGCAGTGAAGAATACACTTGGAATGAACAATGAGAACACTTCAAACCCAGCAGCCTCTACCAACAACCCAAACATGGGCCCATCCAATAGAGTTTAA

Coding sequence (CDS)

ATGGCAAGCCAACAAGAACTTAGACACCAGAGTGATGAGATGGTTGCTGAAGCTCAGGTGAAGAGGGAGGAGATTTTGAACAAGGCATCTACAAATGAGCAATCAGCTGCTCAAACTGCCACTGAACTCAAGGACCAAGCTGCAAATTTCATTCAACAGACTGGAGAGCAAATGAAGAACATGGCACAAGGAGCAGCTGAGGCAGTGAAGAATACACTTGGAATGAACAATGAGAACACTTCAAACCCAGCAGCCTCTACCAACAACCCAAACATGGGCCCATCCAATAGAGTTTAA

Protein sequence

MASQQELRHQSDEMVAEAQVKREEILNKASTNEQSAAQTATELKDQAANFIQQTGEQMKNMAQGAAEAVKNTLGMNNENTSNPAASTNNPNMGPSNRV

Homology

[Close]

BLAST of Sed0020450.1 vs. NCBI nr
Match: XP_038899752.1 (late embryogenesis abundant protein 2-like [Benincasa hispida])

HSP 1 Score: 110.9 bits (276), Expect = 6.2e-21
Identity = 66/109 (60.55%), Postives = 82/109 (75.23%), Query Frame = 0


Query: 1   MASQQELRHQSDEMVAEAQVKREEILN-----------KASTNEQSAAQTATELKDQAAN 60
           MAS Q++ H++ E+V +AQVK++EILN           KAST++QS AQTA+ LKDQAAN
Sbjct: 1   MASHQDISHKAGEIVGQAQVKKDEILNQASHAAHDSKDKASTHDQSPAQTASNLKDQAAN 60

Query: 61  FIQQTGEQMKNMAQGAAEAVKNTLGMNNENTSNPAASTNNPNMGPSNRV 99
           F+QQTGEQ+KNMAQGAA+AVKNTLGMN +NT N    TNNP   PS R+
Sbjct: 61  FLQQTGEQVKNMAQGAADAVKNTLGMNTDNTPNTNNPTNNPTNNPSTRI 109

[Close]

BLAST of Sed0020450.1 vs. NCBI nr
Match: XP_004136082.1 (late embryogenesis abundant protein 2 [Cucumis sativus] >KGN45294.1 hypothetical protein Csa_016519 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 68/103 (66.02%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 1   MASQQELRHQSDEMVAEAQVKREEILNKASTNEQ-SAAQTATELKDQAANFIQQTGEQMK 60
           MAS Q+L H++DE+V +AQVKR+E++N+ +T +Q SAAQTAT+LKDQAA+F+QQTGEQ+K
Sbjct: 1   MASHQDLSHKADEIVGQAQVKRDEMMNQPTTQDQSSAAQTATDLKDQAASFLQQTGEQVK 60

Query: 61  NMAQGAAEAVKNTLGMNNENTS-----NPA-ASTNNPNMGPSN 97
           NMAQGAAEAVKNTLGMN +NTS     NPA  S NNP   P+N
Sbjct: 61  NMAQGAAEAVKNTLGMNTDNTSNTNTHNPANNSANNPTNNPAN 103

[Close]

BLAST of Sed0020450.1 vs. NCBI nr
Match: XP_008461082.1 (PREDICTED: late embryogenesis abundant protein 1 [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-20
Identity = 64/99 (64.65%), Postives = 83/99 (83.84%), Query Frame = 0


Query: 1  MASQQE-LRHQSDEMVAEAQVKREEILNKASTNEQSAAQTATELKDQAANFIQQTGEQMK 60
          MAS Q+ L H++ E V +AQVK++E++N+ + ++QSA QTA++LKDQAANF+QQTGEQ+K
Sbjct: 1  MASHQDNLSHKAGETVGQAQVKKDEMMNQPTAHDQSATQTASDLKDQAANFLQQTGEQVK 60

Query: 61 NMAQGAAEAVKNTLGMNNENTSNPAAS--TNNPNMGPSN 97
          NMAQGAAEAVKNTLGMN +NTSNP ++  TNNP   PSN
Sbjct: 61 NMAQGAAEAVKNTLGMNTDNTSNPNSNNPTNNPTTNPSN 99

[Close]

BLAST of Sed0020450.1 vs. NCBI nr
Match: KAA0058773.1 (late embryogenesis abundant protein 1 [Cucumis melo var. makuwa] >TYK10567.1 late embryogenesis abundant protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-20
Identity = 64/99 (64.65%), Postives = 83/99 (83.84%), Query Frame = 0


Query: 1  MASQQE-LRHQSDEMVAEAQVKREEILNKASTNEQSAAQTATELKDQAANFIQQTGEQMK 60
          MAS Q+ L H++ E V +AQVK++E++N+ + ++QSA QTA++LKDQAANF+QQTGEQ+K
Sbjct: 1  MASHQDNLSHKAGETVGQAQVKKDEMMNQPTAHDQSATQTASDLKDQAANFLQQTGEQVK 60

Query: 61 NMAQGAAEAVKNTLGMNNENTSNPAAS--TNNPNMGPSN 97
          NMAQGAAEAVKNTLGMN +NTSNP ++  TNNP   PSN
Sbjct: 61 NMAQGAAEAVKNTLGMNTDNTSNPNSNNPTNNPTTNPSN 99

[Close]

BLAST of Sed0020450.1 vs. NCBI nr
Match: XP_022964497.1 (late embryogenesis abundant protein 1 [Cucurbita moschata])

HSP 1 Score: 107.5 bits (267), Expect = 6.8e-20
Identity = 64/108 (59.26%), Postives = 82/108 (75.93%), Query Frame = 0


Query: 1   MASQQELRHQSDEMVAEAQVKREEILNKASTNEQ-------------SAAQTATELKDQA 60
           MASQQ++ H   E V +AQVK++E++N+A+ + Q             SAAQTA++LKDQA
Sbjct: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA 60

Query: 61  ANFIQQTGEQMKNMAQGAAEAVKNTLGMNNENTSNPAASTNNPNMGPS 96
           ANF+QQTGEQ+KNMAQGAAEAVKNTLGMN +++SN AA+TNNP   PS
Sbjct: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPS 108

[Close]

BLAST of Sed0020450.1 vs. ExPASy Swiss-Prot
Match: O49816 (Late embryogenesis abundant protein 1 OS=Cicer arietinum OX=3827 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.2e-04
Identity = 33/87 (37.93%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 2   ASQQELRHQSDEMVAEAQVKREEILNKASTNEQSAAQTATELKDQAANFIQQTGEQMKNM 61
           A++ + +  ++    +AQ        K S   QS  +TA   KD +A F+QQTGE++K M
Sbjct: 89  AAKDKTQQTTEATKEKAQDTTGRAREKGSEMGQSTKETAQSGKDNSAGFLQQTGEKVKGM 148

Query: 62  AQGAAEAVKNTLGMNNENTSNPAASTN 89
           AQGA +AVK T GM N++       TN
Sbjct: 149 AQGATDAVKQTFGMANDDKDKDHFPTN 175

[Close]

BLAST of Sed0020450.1 vs. ExPASy Swiss-Prot
Match: O49817 (Late embryogenesis abundant protein 2 OS=Cicer arietinum OX=3827 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 7.1e-04
Identity = 33/87 (37.93%), Postives = 46/87 (52.87%), Query Frame = 0


Query: 2   ASQQELRHQSDEMVAEAQVKREEILNKASTNEQSAAQTATELKDQAANFIQQTGEQMKNM 61
           A++ + +  +     +AQ        K S   QS  +TA   KD +A F+QQTGE+ K M
Sbjct: 67  AAKDKTQQTTQATKEKAQDTTGRAKEKGSEMGQSTKETAQSGKDNSAGFLQQTGEKAKGM 126

Query: 62  AQGAAEAVKNTLGMNNENTSNPAASTN 89
           AQGA +AVK T GM N++       TN
Sbjct: 127 AQGATDAVKQTFGMTNDDQDKDHFPTN 153

[Close]

BLAST of Sed0020450.1 vs. ExPASy TrEMBL
Match: A0A0A0K8V2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433240 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.1e-21
Identity = 68/103 (66.02%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 1   MASQQELRHQSDEMVAEAQVKREEILNKASTNEQ-SAAQTATELKDQAANFIQQTGEQMK 60
           MAS Q+L H++DE+V +AQVKR+E++N+ +T +Q SAAQTAT+LKDQAA+F+QQTGEQ+K
Sbjct: 1   MASHQDLSHKADEIVGQAQVKRDEMMNQPTTQDQSSAAQTATDLKDQAASFLQQTGEQVK 60

Query: 61  NMAQGAAEAVKNTLGMNNENTS-----NPA-ASTNNPNMGPSN 97
           NMAQGAAEAVKNTLGMN +NTS     NPA  S NNP   P+N
Sbjct: 61  NMAQGAAEAVKNTLGMNTDNTSNTNTHNPANNSANNPTNNPAN 103

[Close]

BLAST of Sed0020450.1 vs. ExPASy TrEMBL
Match: A0A5D3CF20 (Late embryogenesis abundant protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002210 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 6.7e-21
Identity = 64/99 (64.65%), Postives = 83/99 (83.84%), Query Frame = 0


Query: 1  MASQQE-LRHQSDEMVAEAQVKREEILNKASTNEQSAAQTATELKDQAANFIQQTGEQMK 60
          MAS Q+ L H++ E V +AQVK++E++N+ + ++QSA QTA++LKDQAANF+QQTGEQ+K
Sbjct: 1  MASHQDNLSHKAGETVGQAQVKKDEMMNQPTAHDQSATQTASDLKDQAANFLQQTGEQVK 60

Query: 61 NMAQGAAEAVKNTLGMNNENTSNPAAS--TNNPNMGPSN 97
          NMAQGAAEAVKNTLGMN +NTSNP ++  TNNP   PSN
Sbjct: 61 NMAQGAAEAVKNTLGMNTDNTSNPNSNNPTNNPTTNPSN 99

[Close]

BLAST of Sed0020450.1 vs. ExPASy TrEMBL
Match: A0A1S3CF46 (late embryogenesis abundant protein 1 OS=Cucumis melo OX=3656 GN=LOC103499779 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 6.7e-21
Identity = 64/99 (64.65%), Postives = 83/99 (83.84%), Query Frame = 0


Query: 1  MASQQE-LRHQSDEMVAEAQVKREEILNKASTNEQSAAQTATELKDQAANFIQQTGEQMK 60
          MAS Q+ L H++ E V +AQVK++E++N+ + ++QSA QTA++LKDQAANF+QQTGEQ+K
Sbjct: 1  MASHQDNLSHKAGETVGQAQVKKDEMMNQPTAHDQSATQTASDLKDQAANFLQQTGEQVK 60

Query: 61 NMAQGAAEAVKNTLGMNNENTSNPAAS--TNNPNMGPSN 97
          NMAQGAAEAVKNTLGMN +NTSNP ++  TNNP   PSN
Sbjct: 61 NMAQGAAEAVKNTLGMNTDNTSNPNSNNPTNNPTTNPSN 99

[Close]

BLAST of Sed0020450.1 vs. ExPASy TrEMBL
Match: A0A6J1KJU5 (late embryogenesis abundant protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111494669 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.3e-20
Identity = 63/108 (58.33%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   MASQQELRHQSDEMVAEAQVKREEILNKAST-------------NEQSAAQTATELKDQA 60
           MASQQ++ H   E+V +AQVK++E++N+A+              ++ SAAQTA++LKDQA
Sbjct: 1   MASQQDISHSVGEVVGQAQVKKDEVMNQAANAAQEAKDSASTTLDQSSAAQTASDLKDQA 60

Query: 61  ANFIQQTGEQMKNMAQGAAEAVKNTLGMNNENTSNPAASTNNPNMGPS 96
           ANF+QQTGEQ+KNMAQGAAEAVKNTLGMN +++SN AA+TNNP   PS
Sbjct: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPS 108

[Close]

BLAST of Sed0020450.1 vs. ExPASy TrEMBL
Match: A0A6J1HHY8 (late embryogenesis abundant protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464504 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.3e-20
Identity = 64/108 (59.26%), Postives = 82/108 (75.93%), Query Frame = 0


Query: 1   MASQQELRHQSDEMVAEAQVKREEILNKASTNEQ-------------SAAQTATELKDQA 60
           MASQQ++ H   E V +AQVK++E++N+A+ + Q             SAAQTA++LKDQA
Sbjct: 1   MASQQDISHSVGEAVGQAQVKKDEVINQAANSAQEAKDSASTTLDQSSAAQTASDLKDQA 60

Query: 61  ANFIQQTGEQMKNMAQGAAEAVKNTLGMNNENTSNPAASTNNPNMGPS 96
           ANF+QQTGEQ+KNMAQGAAEAVKNTLGMN +++SN AA+TNNP   PS
Sbjct: 61  ANFLQQTGEQVKNMAQGAAEAVKNTLGMNTDSSSNAAANTNNPTNTPS 108

[Close]

BLAST of Sed0020450.1 vs. TAIR 10
Match: AT1G52680.1 (late embryogenesis abundant protein-related / LEA protein-related )

HSP 1 Score: 58.5 bits (140), Expect = 3.4e-09
Identity = 47/110 (42.73%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 1   MASQQELRHQSDEMVAEAQVKREEILNKAS----------TNEQSAA-----QTATELKD 60
           M+S Q+L H + E+  + Q+K+EE LN  S          T+ QS       Q    L  
Sbjct: 1   MSSSQQLSHSAGEVTGQVQLKKEEYLNNVSHAMNQNADHHTHSQSQLHSEHDQNNPSLIS 60

Query: 61  QAANFIQQTGEQMKNMAQGAAEAVKNTLGMN--NENTSNPAASTNNPNMG 94
           QA++ IQQTG Q+KNMAQGAA+AVKNTLGM+    + S+PA +T +   G
Sbjct: 61  QASSVIQQTGGQVKNMAQGAADAVKNTLGMSPATNSPSSPAGTTRSNKPG 110

[Close]

BLAST of Sed0020450.1 vs. TAIR 10
Match: AT4G13560.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 45.1 bits (105), Expect = 3.9e-05
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 27  NKASTNEQSAAQTATELKDQAANFIQQTGEQMKNMAQGAAEAVKNTLGMNNE 79
           +K +    SA ++A   ++QAA    QTGE +KNMAQGA + VKN+LGMN +
Sbjct: 57  DKTADGSHSANKSAQHNQEQAAGLFGQTGESVKNMAQGALDGVKNSLGMNEK 108

The following BLAST results are available for this feature:

BLAST of Sed0020450.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899752.1	6.2e-21	60.55	late embryogenesis abundant protein 2-like [Benincasa hispida]	[more]
XP_004136082.1	1.1e-20	66.02	late embryogenesis abundant protein 2 [Cucumis sativus] >KGN45294.1 hypothetical...	[more]
XP_008461082.1	1.4e-20	64.65	PREDICTED: late embryogenesis abundant protein 1 [Cucumis melo]	[more]
KAA0058773.1	1.4e-20	64.65	late embryogenesis abundant protein 1 [Cucumis melo var. makuwa] >TYK10567.1 lat...	[more]
XP_022964497.1	6.8e-20	59.26	late embryogenesis abundant protein 1 [Cucurbita moschata]	[more]

BLAST of Sed0020450.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49816	4.2e-04	37.93	Late embryogenesis abundant protein 1 OS=Cicer arietinum OX=3827 PE=2 SV=1	[more]
O49817	7.1e-04	37.93	Late embryogenesis abundant protein 2 OS=Cicer arietinum OX=3827 PE=2 SV=1	[more]

BLAST of Sed0020450.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8V2	5.1e-21	66.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433240 PE=4 SV=1	[more]
A0A5D3CF20	6.7e-21	64.65	Late embryogenesis abundant protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3CF46	6.7e-21	64.65	late embryogenesis abundant protein 1 OS=Cucumis melo OX=3656 GN=LOC103499779 PE...	[more]
A0A6J1KJU5	3.3e-20	58.33	late embryogenesis abundant protein 1 OS=Cucurbita maxima OX=3661 GN=LOC11149466...	[more]
A0A6J1HHY8	3.3e-20	59.26	late embryogenesis abundant protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111464...	[more]

BLAST of Sed0020450.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52680.1	3.4e-09	42.73	late embryogenesis abundant protein-related / LEA protein-related	[more]
AT4G13560.1	3.9e-05	48.08	Late embryogenesis abundant protein (LEA) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..98
None	No IPR available	PANTHER	PTHR34191:SF9	F6D8.10	coord: 1..80
IPR039624	Stress-induced protein KIN1/KIN2	PANTHER	PTHR34191	LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN	coord: 1..80

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0020450	Sed0020450	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0020450.1-cds	Sed0020450.1-cds-LG09:38765707..38765844	CDS
Sed0020450.1-cds	Sed0020450.1-cds-LG09:38766854..38766955	CDS
Sed0020450.1-cds	Sed0020450.1-cds-LG09:38767099..38767155	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0020450.1-exon	Sed0020450.1-exon-LG09:38765707..38765844	exon
Sed0020450.1-exon	Sed0020450.1-exon-LG09:38766854..38766955	exon
Sed0020450.1-exon	Sed0020450.1-exon-LG09:38767099..38767155	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0020450.1	Sed0020450.1-protein	polypeptide