Sed0018726.2 (mRNA) Chayote v1

Overview


Name	Sed0018726.2
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	U1 small nuclear ribonucleoprotein A isoform X2
Location	LG10: 4494107 .. 4499350 (-)
Sequence length	1101
RNA-Seq Expression	Sed0018726.2
Synteny	Sed0018726.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAGAACTGCTCTCCGATGGACGAAATGGCGAACTACTATCCGGCGCCACCACCGGCGCCGGCGTCTGGTCTCGAAGCTCCGACCTATTCGTATTACCAGGCGCCACCGTCGTCTCAGCATTACCCTCCCACCTTCGCTTCCTACGCCTTACCTCACGCAGCGTCCTTCAATGACGTCCGAACCTTATTCATCGCCGGCCTGCCTGAAGATGTCAAGCCCCGAGAAATCTACAATCTCTTCCGCGACTTTCCCGGATACGAGTCCTCTCATCTTCGGACCCCTACCCAGACGACGCAGGTATTGTTTTTTGCTTTTTCTAATTTCCCAAATTGGCGATTCTTGTGGAATTTTCCTTTTCTCAAGAACGTGAATCGTCTCTAATTTTGGCGTCTGAATGCCCTTAGCTTTTCTTATAGGGTTTAATGTTTGAGTTATCTCGTGGCCATTTAGTTGCTCCAGGATTTTTCTTAGGGAATAAGAAAATAGGTAATTGACCCAACCGAAACTGCAAAACACCTCCCACAGACTAAAAAAGAGGTGTAAATGGTTGAGCCCTGGGGCGTTGTCTTAGGGTTCGAGGCAGCTCTGTAAATTAATTTTAAAGGGCACCCCAAATTTCGTCTCTGGCCTTGAGATATATCCTGGTACCACATTCTAAGGACGAGGTAGTGGTGCTCTGATTTAGAAAAGCAAAGTTTTAAGTTCCCAAGCTATATAAAAAAAAAAAGAAGAGGTGTAAGTGAAACTATCATGGTGTAAAAGGGGAGAACCCTTGCAAATGAGTTGATGGGTAATTCTAGAAAGTTTACTGATTAAATACTGGCTCACAAAGTCCCCAAGGGGTGACACAGTGGTTGAAGTCTTGGGCTTTGAAGGTATGCTTTCTTCAAGGTCTCAGGTTCGAGACTCAATTGTGACATTACTCCTTCAATGTCTCCCGGTGCCTAGCCTAGGGATGGGTGTGGTTACCTTTGTTTCAAAAAAAAAAGTATTGATTCACATACTTTTGGTTAGGTTAAATTAAGTTTTTTTTTGACACATGTAATTGTTCAAGCCGGTTTACACATATGGACTATTCTACCTGTTACAAATTAGTCGAGGGGTATTTCTTAAATAGAGGAAACTCCCCGATGATGAGGAATATAATATGAAGATTCTCCCTTTAAAATATTAAATTCGTTGATGCTCGGATAATTTTATGCATACAGTATATGTATCACTACTGTGTTGGTGGTTGACCTTATGTTTTATTGATTAGGGTAGTGCATGTATTTTCTTACAAATTTTTTTTCGGTGTGGTTACAGCCCTTTGCATTTGCTGTATTTTCGGACCAGCAGTCTGCCATTGGTGCAATGCATGCTGTAAATGTAAGTACTTCTTCCCTACAGCTGTATTTTTTCAAGTTCTTTGGATAGGAAAATCATATCAATGATCAAAGGAAATAAGGAAAAGGAACATGGAAGAAGAATTTAGCCCTGTCTTGGAATAAGCTACACTTCATCTTCAATCAGAACAGCTAGGAAAGCAGACCACTTCATAATAGTAACTGCAATACACTATAAGAACTATCAAAGTATCTTGCGATTTAAGAAAATGATTTATTCCTCTTTTCCTTTTAATTACAGCCCAGAAAGAATTCAAAGTTTTAATTCATGAAGTTCTTAAAACTTTGTTGCTCTCTGAATGTTGCTACTACAAGACATTGGCAAGCATGCATGATCAAAGAACATTCTTTTTTTAAAATTTTTCTTTTTGTTGTAATTTTGTAAACTAATCTTCCAAACAGTTTCATCGAAGTATTGAAGTTACAACATCAAGGAACTCTTGCCAATTTGTTTGAAATCCTTTTAACTTATTCTTAACTCCCCGAGTTTGATTTACTATTTTTACCTCACGCTTTGCTCATCATTCATTGACCCTAAAAGATAGCTATTGTTCTGCTATAACACTAAGTTGTTACCGATTCATTGAAGTAATGAAGTTACGCTTACAACTTCAGGGAACTCTTGAGATACACTTAATTTCTTTGAAATCAGGAACTTTGAGTTCGATTTCTTATGTTTACCTTAAAGATAAGGTGGACAACTATTATTACTGCTAATAAGGACTTACATAAGGCTCTGATCATTTGTTTGAGTTAATTCTATATTCTATGTATTTTTGGTGCAAGGACTTGCCCTTTCTGTCCGGTTATAACTTGTCTTTCTTTATTGCGAGTTGGCAACAATTTTGTAAGCCTAATTGGGCCTGGGTAGCCCCCAATATTTCATAATATCAATGAAATGTTTCTGTTTCAAAAAAAAAAAAAAATACTGCTAAAATACTAAACAGTTGCCAATTCATGGTTTAGCCTTTTCTGCTGGGCATTTTCTAGTTGTGCATACGTTCATGGAAAAGGAACTTCCTCTAAGCTCAAGCATCTAAAAAATCTTTCGTCTTGTTTTAATATTTTCTTCCCAAAAAGTATCAAGTAAAATTTGACCATCTAAATTATTTTTAGATGGTCGTTCAATTTTCTTCCCTCCAAATCTTTATCCTATTCGTTTTAGGCAGATCTCTTTTATCCAATTAAATTTTCTTTCTTCTTAATCTTTGCGGTCAATTGTTCGTTCTTTTAACTCTGCTAACAATGATTATAAGATTAGAAATTGAAGGGATGAAATGGTAGATGTAATATCTGAAAATATGTTTCTTAAGCTTCTCCACTCTTCTTCAGGGCATGGTGTTTGATCTTGAGAAGCAGTCAGTTCTCTATGTCGATTTAGCTAAAGCCAATTCAAGATCCAAGCGGACGAGGACAGGTACATATCTTGATGGCTGTCATCTTATGAATTTATCCTTTTATTTAATTTAATGGTATAACAAATTGAAAATTTTCTTGTTGACGTGTTGCATGATTAGAAGATGAAAGATATGGATCAGATAAGAAGGCTAGAGTATCTAGGTTTCCAAGGAGCACTCCCGATCCTGGTAAGATGGTTGCTTGACATTCTTTATGCCGGTGAAGTGTAAACTATTTCTTTTACTAACTTTTTAGTTTATTTCTTAAATATTCTATCATCTTGATGACCCTCACAGAAACTATTATTATGATTATTTTTAATATACAAATCTGCCCCCTCTGATTTATTTGATGCTGATTATGTGCTGCTTGTATAACCTCTTTGAGTAAGAAGTAATGAATTAGTCACGCAGAGGACACATTATTCTAAAAGCTCACTTTGCACATGGTTTGCACGCTTGGGCACTAGCAGGTCTTGGCAGCACTCACATGTCTGGAATGAGTAATTCTGCTTACGACACGATTGGTTATCCATCTGCACAAAGGTCATCTGCACTACTTAGCACATTTTTATTATTGAAATGGTTATTTACAAGCATGTGTGAATGAAGCTTATACATTGTTGTATAACAATATTCACTAGTAGAAAGGCCAAGGGCTTTAGTAAGAAGCTCTTTTCTACACGCCCTGATTCCTGTGTTATGTTTTTAACTTTTCCTTACTTTCTTCTTTGTGTTTCTTCTTATGATTTCTAACTAAGTTGTATTTTCTATCATCAGCCATGGAAGCTTTGATTACAAAACTGTAAATGATACAGTGGCTGCAAATGTGGTAAGGTCACTTTTTTGTTACAATCTGGGATTCTTTAGTCCTTAGTTCTTACATTCTGTCCTTGGGTTATGATTCAAATTTTTTTTGTAACTTTTCTATTACCAAAATGGAATCCTTTCTTGTAAGCTGTTTTTTGTTCTGGGCTTTTCTTGTAAGTTGCTTTTTGTCCTGCACTTTTCTTTTCGTTTTCTCTTTGTACTTTTAGATTTCTAGTGAAAATTTAAGAGTTAGTTTTCTCATTCCAAAATAACTATCGGCCTAAGAGTACTATAAATTACTTGGAAAGAATGAGTTCAATCTATGGTAGTTAGGGTCAGGCGATGGTCTGTGGGATTACTTGAAGTGTGGCACATAAAATGGCACGCACTCTCACAGATTTAAAAGAAATCACTAAAAAGGAAGGCCTAGCCGCTTCGTAAAATTTATTTAACCTTGAAGTTCTACAATAATATTTCTACATACTCCTTTTGTTTTTTGTTCTCTTTTGGAGAGGAGGGGAGTTCTGGGAATTTGGCTGCAGTGCATATTAGAACTGGATAATTTAAAGATTTTCCTTGAACAGCTAGTGATTCATTGAAAATGTATGTATTGCATTATAATTCTGCTATCATATATTTTTATATTTAGACGTAAATAAAGTTGCGTTGTGCTTAGGCCAAAACATCCGAGTCATGCTTGATTGAATTTTTATAGAACAATGTATTTAGTGAATCTGTTAACATCGACCGGATTATTCTTCTTTTCCAGACGCCTCAAAATCCCCCTTGTCCAACAGTTTTTGTGGCGAATCTAGGGCCAAGTTGCACAGAGCAAGAGCTGATTCAAATTTTTTCAAGGTTGGTAATTTTACTGCATATTATTTGGGTTATGTTCTGAACATGCAAGAACAGGCATCATCTGTTTATTTGATATAATTCCTTCCAGATGCCCAGGGTTCTTAAAACTGAAGATGCAGAGCACGTATGGGGCTCCAGTTGCTTTTGCCGATTTTCAGGTTAGAAGTCCTTCGTATATATATTTATTTTGACAACCAAGAATCCGAGCAGCACCCCACTATATACTTGGAGACTCATGCCCATCTCAAGATCCTGATGATTGAGACAACAATGAATCTTACAAGAAAGCATACTTTAGAGACGTCAAGCCTCTACTAACGAGGCCGCCCTGACATTGCATTCTAAGTTTTTGCGCTCTAATAACTTCATTAGATCATTGATATGTTGTGTGAAATGTGTGTAGGATACAGCCTGTTCATCTGGAGCAGTGAATCATTTGCAAGGCACAGTTCTGTACTCGTCACCTCCAGGAGAGGGCATGCGATTGGAGTATCCTTGTACAAAGTTGTTTTTCTTTAATTAAAATTCTACTGCTACACATAATGTCTTCAAATGTTTTGCTTAACCCGAAATTCAGGTACGCAAAATCTCGAATGGGTATGCGTAGGAAATCGAAATGAATAATACAATACTTGCAGACATGACTGCAGCCAACATGGAAGAAAAGAGAGAGGCCCTCAGGCCATGTTACCAGCCAGAGGATGTGCATTATTTGTATTGTTCTATCTAGATGAGCAAATTTGCAACATATGCCATGCCCATTTTATTTTTTCATTGTATCAAATCCTGGCC

mRNA sequence

CAGAGAACTGCTCTCCGATGGACGAAATGGCGAACTACTATCCGGCGCCACCACCGGCGCCGGCGTCTGGTCTCGAAGCTCCGACCTATTCGTATTACCAGGCGCCACCGTCGTCTCAGCATTACCCTCCCACCTTCGCTTCCTACGCCTTACCTCACGCAGCGTCCTTCAATGACGTCCGAACCTTATTCATCGCCGGCCTGCCTGAAGATGTCAAGCCCCGAGAAATCTACAATCTCTTCCGCGACTTTCCCGGATACGAGTCCTCTCATCTTCGGACCCCTACCCAGACGACGCAGCCCTTTGCATTTGCTGTATTTTCGGACCAGCAGTCTGCCATTGGTGCAATGCATGCTGTAAATGGCATGGTGTTTGATCTTGAGAAGCAGTCAGTTCTCTATGTCGATTTAGCTAAAGCCAATTCAAGATCCAAGCGGACGAGGACAGATGAAAGATATGGATCAGATAAGAAGGCTAGAGTATCTAGGTTTCCAAGGAGCACTCCCGATCCTGCAGGTCTTGGCAGCACTCACATGTCTGGAATGAGTAATTCTGCTTACGACACGATTGGTTATCCATCTGCACAAAGCCATGGAAGCTTTGATTACAAAACTGTAAATGATACAGTGGCTGCAAATGTGACGCCTCAAAATCCCCCTTGTCCAACAGTTTTTGTGGCGAATCTAGGGCCAAGTTGCACAGAGCAAGAGCTGATTCAAATTTTTTCAAGATGCCCAGGGTTCTTAAAACTGAAGATGCAGAGCACGTATGGGGCTCCAGTTGCTTTTGCCGATTTTCAGGATACAGCCTGTTCATCTGGAGCAGTGAATCATTTGCAAGGCACAGTTCTGTACTCGTCACCTCCAGGAGAGGGCATGCGATTGGAGTACGCAAAATCTCGAATGGGTATGCGTAGGAAATCGAAATGAATAATACAATACTTGCAGACATGACTGCAGCCAACATGGAAGAAAAGAGAGAGGCCCTCAGGCCATGTTACCAGCCAGAGGATGTGCATTATTTGTATTGTTCTATCTAGATGAGCAAATTTGCAACATATGCCATGCCCATTTTATTTTTTCATTGTATCAAATCCTGGCC

Coding sequence (CDS)

ATGGACGAAATGGCGAACTACTATCCGGCGCCACCACCGGCGCCGGCGTCTGGTCTCGAAGCTCCGACCTATTCGTATTACCAGGCGCCACCGTCGTCTCAGCATTACCCTCCCACCTTCGCTTCCTACGCCTTACCTCACGCAGCGTCCTTCAATGACGTCCGAACCTTATTCATCGCCGGCCTGCCTGAAGATGTCAAGCCCCGAGAAATCTACAATCTCTTCCGCGACTTTCCCGGATACGAGTCCTCTCATCTTCGGACCCCTACCCAGACGACGCAGCCCTTTGCATTTGCTGTATTTTCGGACCAGCAGTCTGCCATTGGTGCAATGCATGCTGTAAATGGCATGGTGTTTGATCTTGAGAAGCAGTCAGTTCTCTATGTCGATTTAGCTAAAGCCAATTCAAGATCCAAGCGGACGAGGACAGATGAAAGATATGGATCAGATAAGAAGGCTAGAGTATCTAGGTTTCCAAGGAGCACTCCCGATCCTGCAGGTCTTGGCAGCACTCACATGTCTGGAATGAGTAATTCTGCTTACGACACGATTGGTTATCCATCTGCACAAAGCCATGGAAGCTTTGATTACAAAACTGTAAATGATACAGTGGCTGCAAATGTGACGCCTCAAAATCCCCCTTGTCCAACAGTTTTTGTGGCGAATCTAGGGCCAAGTTGCACAGAGCAAGAGCTGATTCAAATTTTTTCAAGATGCCCAGGGTTCTTAAAACTGAAGATGCAGAGCACGTATGGGGCTCCAGTTGCTTTTGCCGATTTTCAGGATACAGCCTGTTCATCTGGAGCAGTGAATCATTTGCAAGGCACAGTTCTGTACTCGTCACCTCCAGGAGAGGGCATGCGATTGGAGTACGCAAAATCTCGAATGGGTATGCGTAGGAAATCGAAATGA

Protein sequence

MDEMANYYPAPPPAPASGLEAPTYSYYQAPPSSQHYPPTFASYALPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTDERYGSDKKARVSRFPRSTPDPAGLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMRLEYAKSRMGMRRKSK

Homology

[Close]

BLAST of Sed0018726.2 vs. NCBI nr
Match: XP_023543722.1 (uncharacterized protein LOC111803516 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 521.9 bits (1343), Expect = 3.6e-144
Identity = 269/321 (83.80%), Postives = 287/321 (89.41%), Query Frame = 0


Query: 1   MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA-- 60
           MD++ +YY  P    PP+  SGLEAP Y YYQ P      PSSQHY    PPTFASY   
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLP 60

Query: 61  -LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSD 120
            LPHAAS N+VRTLFIAGLPEDVKPREIYNLFR+FPGYESSHLR+PTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRT-DERYGSDKKARVSRFPRST 180
           QQSA+GAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKRTRT DERYGSDKKA+VS F RST
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 181 PDPAGLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVAN 240
           PDPAGLGSTHMSGM NSAY+TIGYPSAQSHGSFD KTVNDTVAANVTPQNPPCPT+FVAN
Sbjct: 181 PDPAGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDSKTVNDTVAANVTPQNPPCPTLFVAN 240

Query: 241 LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSP 300
           LGPSCTEQEL+QIFSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSP
Sbjct: 241 LGPSCTEQELVQIFSRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSP 300

Query: 301 PGEGMRLEYAKSRMGMRRKSK 304
           PGEGMRLEYAKSRMGMR+K K
Sbjct: 301 PGEGMRLEYAKSRMGMRKKLK 321

[Close]

BLAST of Sed0018726.2 vs. NCBI nr
Match: XP_038881693.1 (protein WHI4 isoform X1 [Benincasa hispida])

HSP 1 Score: 521.5 bits (1342), Expect = 4.7e-144
Identity = 270/318 (84.91%), Postives = 284/318 (89.31%), Query Frame = 0


Query: 1   MDEMANYYPAP-PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA---LP 60
           MD+MA+YYP P PP   SGLE P Y +YQ P      P SQHY    PPTFASY    LP
Sbjct: 1   MDDMASYYPQPQPPPQPSGLEPPHYPFYQVPPPPSSAPPSQHYLSQHPPTFASYGLPFLP 60

Query: 61  HAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQS 120
           HAAS N+VRTLFIAGLPEDVKPREIYNLFR+FPGYESSHLRTPTQTTQPFAFAVFSDQQS
Sbjct: 61  HAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQS 120

Query: 121 AIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRT-DERYGSDKKARVSRFPRSTPDP 180
           AIGAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKRTRT DERYGSDKKA+VS F RSTPDP
Sbjct: 121 AIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRSTPDP 180

Query: 181 AGLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGP 240
           AGLGSTHMSGM NSAY+TIGYPSAQSHGSFD KTVNDTVAANV PQNPPCPT+FVANLGP
Sbjct: 181 AGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGP 240

Query: 241 SCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGE 300
           SCTEQELIQIFSRCPGFLKLKMQSTYGAPVAF DFQDT CS+GA+NHLQG++LYSSPPGE
Sbjct: 241 SCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFVDFQDTGCSTGALNHLQGSILYSSPPGE 300

Query: 301 GMRLEYAKSRMGMRRKSK 304
           GMRLEYAKSRMGMR+K K
Sbjct: 301 GMRLEYAKSRMGMRKKLK 318

[Close]

BLAST of Sed0018726.2 vs. NCBI nr
Match: XP_022949756.1 (U1 small nuclear ribonucleoprotein A isoform X1 [Cucurbita moschata])

HSP 1 Score: 521.2 bits (1341), Expect = 6.1e-144
Identity = 269/321 (83.80%), Postives = 287/321 (89.41%), Query Frame = 0


Query: 1   MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA-- 60
           MD++ +YY  P    PP+  SGLEAP Y YYQ P      PSSQHY    PPTFASY   
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLP 60

Query: 61  -LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSD 120
            LPHAAS N+VRTLFIAGLP+DVKPREIYNLFR+FPGYESSHLR+PTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRT-DERYGSDKKARVSRFPRST 180
           QQSA+GAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKRTRT DERYGSDKKA+VS F RST
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 181 PDPAGLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVAN 240
           PDPAGLGSTHMSGM NSAY+TIGYPSAQSHGSFD KTVNDTVAANVTPQNPPCPT+FVAN
Sbjct: 181 PDPAGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDSKTVNDTVAANVTPQNPPCPTLFVAN 240

Query: 241 LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSP 300
           LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSP
Sbjct: 241 LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSP 300

Query: 301 PGEGMRLEYAKSRMGMRRKSK 304
           PGEGMRLEYAKSRMGMR+K K
Sbjct: 301 PGEGMRLEYAKSRMGMRKKLK 321

[Close]

BLAST of Sed0018726.2 vs. NCBI nr
Match: XP_022977595.1 (U1 small nuclear ribonucleoprotein A isoform X2 [Cucurbita maxima])

HSP 1 Score: 518.1 bits (1333), Expect = 5.2e-143
Identity = 268/321 (83.49%), Postives = 285/321 (88.79%), Query Frame = 0


Query: 1   MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA-- 60
           MD++ +YY  P    PP+  SGLEAP Y YYQ P      PSSQHY    PPTFASY   
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLP 60

Query: 61  -LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSD 120
            LPHAAS N+VRTLFIAGLPEDVKPREIYNLFR+FPGYESSHLR+PTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRT-DERYGSDKKARVSRFPRST 180
           QQSA+GAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKR RT DERYGSDKKA+VS F R T
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRMRTEDERYGSDKKAKVSIFSRRT 180

Query: 181 PDPAGLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVAN 240
           PDPAGLGSTHMSGM NSAY+TIGYPSAQSHGSFD KTVNDTVAANVTPQNPPCPT+FVAN
Sbjct: 181 PDPAGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVTPQNPPCPTLFVAN 240

Query: 241 LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSP 300
           LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSP
Sbjct: 241 LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSP 300

Query: 301 PGEGMRLEYAKSRMGMRRKSK 304
           PGEGMRLEYAKSRMGMR+K K
Sbjct: 301 PGEGMRLEYAKSRMGMRKKLK 321

[Close]

BLAST of Sed0018726.2 vs. NCBI nr
Match: XP_023543723.1 (protein WHI4 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 515.8 bits (1327), Expect = 2.6e-142
Identity = 268/321 (83.49%), Postives = 286/321 (89.10%), Query Frame = 0


Query: 1   MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA-- 60
           MD++ +YY  P    PP+  SGLEAP Y YYQ P      PSSQHY    PPTFASY   
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLP 60

Query: 61  -LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSD 120
            LPHAAS N+VRTLFIAGLPEDVKPREIYNLFR+FPGYESSHLR+PTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRT-DERYGSDKKARVSRFPRST 180
           QQSA+GAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKRTRT DERYGSDKKA+VS F RST
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 181 PDPAGLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVAN 240
           PDP GLGSTHMSGM NSAY+TIGYPSAQSHGSFD KTVNDTVAANVTPQNPPCPT+FVAN
Sbjct: 181 PDP-GLGSTHMSGMGNSAYNTIGYPSAQSHGSFDSKTVNDTVAANVTPQNPPCPTLFVAN 240

Query: 241 LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSP 300
           LGPSCTEQEL+QIFSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSP
Sbjct: 241 LGPSCTEQELVQIFSRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSP 300

Query: 301 PGEGMRLEYAKSRMGMRRKSK 304
           PGEGMRLEYAKSRMGMR+K K
Sbjct: 301 PGEGMRLEYAKSRMGMRKKLK 320

[Close]

BLAST of Sed0018726.2 vs. ExPASy Swiss-Prot
Match: Q6DH13 (RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.6e-14
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 53  DVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMH 112
           +VRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F  +  A  A +
Sbjct: 18  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRSGAEAAKN 77

Query: 113 AVNGMVFDLEKQSVLYVDLAKANSRSKRTR 143
           A+NG+ FD E    L ++ AKAN++  +++
Sbjct: 78  ALNGIRFDPESPQTLRLEFAKANTKMAKSK 105

[Close]

BLAST of Sed0018726.2 vs. ExPASy Swiss-Prot
Match: Q9W6I1 (RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.7e-14
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 53  DVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMH 112
           +VRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F  +  A  A +
Sbjct: 20  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAKN 79

Query: 113 AVNGMVFDLEKQSVLYVDLAKANSRSKRTR 143
           A+NG+ FD E    L ++ AKAN++  +++
Sbjct: 80  ALNGIRFDPENPQTLRLEFAKANTKMAKSK 107

[Close]

BLAST of Sed0018726.2 vs. ExPASy Swiss-Prot
Match: Q9YGP5 (RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.2e-14
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 53  DVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMH 112
           +VRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F ++  A  A +
Sbjct: 18  EVRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDNRAGAEAAKN 77

Query: 113 AVNGMVFDLEKQSVLYVDLAKANSRSKRTR 143
           A+NG+ FD E    L ++ AKAN++  + +
Sbjct: 78  ALNGIRFDPENPQTLRLEFAKANTKMAKNK 105

[Close]

BLAST of Sed0018726.2 vs. ExPASy Swiss-Prot
Match: Q93062 (RNA-binding protein with multiple splicing OS=Homo sapiens OX=9606 GN=RBPMS PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.4e-13
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 0


Query: 53  DVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMH 112
           +VRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F  +  A  A +
Sbjct: 22  EVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAKN 81

Query: 113 AVNGMVFDLEKQSVLYVDLAKANSRSKRTR 143
           A+NG+ FD E    L ++ AKAN++  + +
Sbjct: 82  ALNGIRFDPEIPQTLRLEFAKANTKMAKNK 109

[Close]

BLAST of Sed0018726.2 vs. ExPASy Swiss-Prot
Match: Q9WVB0 (RNA-binding protein with multiple splicing OS=Mus musculus OX=10090 GN=Rbpms PE=1 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 2.4e-13
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 0


Query: 53  DVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMH 112
           +VRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F  +  A  A +
Sbjct: 22  EVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAKN 81

Query: 113 AVNGMVFDLEKQSVLYVDLAKANSRSKRTR 143
           A+NG+ FD E    L ++ AKAN++  + +
Sbjct: 82  ALNGIRFDPEIPQTLRLEFAKANTKMAKNK 109

[Close]

BLAST of Sed0018726.2 vs. ExPASy TrEMBL
Match: A0A6J1GCW9 (U1 small nuclear ribonucleoprotein A isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453048 PE=4 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 3.0e-144
Identity = 269/321 (83.80%), Postives = 287/321 (89.41%), Query Frame = 0


Query: 1   MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA-- 60
           MD++ +YY  P    PP+  SGLEAP Y YYQ P      PSSQHY    PPTFASY   
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLP 60

Query: 61  -LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSD 120
            LPHAAS N+VRTLFIAGLP+DVKPREIYNLFR+FPGYESSHLR+PTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRT-DERYGSDKKARVSRFPRST 180
           QQSA+GAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKRTRT DERYGSDKKA+VS F RST
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 181 PDPAGLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVAN 240
           PDPAGLGSTHMSGM NSAY+TIGYPSAQSHGSFD KTVNDTVAANVTPQNPPCPT+FVAN
Sbjct: 181 PDPAGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDSKTVNDTVAANVTPQNPPCPTLFVAN 240

Query: 241 LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSP 300
           LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSP
Sbjct: 241 LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSP 300

Query: 301 PGEGMRLEYAKSRMGMRRKSK 304
           PGEGMRLEYAKSRMGMR+K K
Sbjct: 301 PGEGMRLEYAKSRMGMRKKLK 321

[Close]

BLAST of Sed0018726.2 vs. ExPASy TrEMBL
Match: A0A6J1IMS7 (U1 small nuclear ribonucleoprotein A isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477875 PE=4 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 2.5e-143
Identity = 268/321 (83.49%), Postives = 285/321 (88.79%), Query Frame = 0


Query: 1   MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA-- 60
           MD++ +YY  P    PP+  SGLEAP Y YYQ P      PSSQHY    PPTFASY   
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLP 60

Query: 61  -LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSD 120
            LPHAAS N+VRTLFIAGLPEDVKPREIYNLFR+FPGYESSHLR+PTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRT-DERYGSDKKARVSRFPRST 180
           QQSA+GAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKR RT DERYGSDKKA+VS F R T
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRMRTEDERYGSDKKAKVSIFSRRT 180

Query: 181 PDPAGLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVAN 240
           PDPAGLGSTHMSGM NSAY+TIGYPSAQSHGSFD KTVNDTVAANVTPQNPPCPT+FVAN
Sbjct: 181 PDPAGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVTPQNPPCPTLFVAN 240

Query: 241 LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSP 300
           LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSP
Sbjct: 241 LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSP 300

Query: 301 PGEGMRLEYAKSRMGMRRKSK 304
           PGEGMRLEYAKSRMGMR+K K
Sbjct: 301 PGEGMRLEYAKSRMGMRKKLK 321

[Close]

BLAST of Sed0018726.2 vs. ExPASy TrEMBL
Match: A0A6J1GD02 (protein WHI4 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453048 PE=4 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 2.1e-142
Identity = 268/321 (83.49%), Postives = 286/321 (89.10%), Query Frame = 0


Query: 1   MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA-- 60
           MD++ +YY  P    PP+  SGLEAP Y YYQ P      PSSQHY    PPTFASY   
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLP 60

Query: 61  -LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSD 120
            LPHAAS N+VRTLFIAGLP+DVKPREIYNLFR+FPGYESSHLR+PTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRT-DERYGSDKKARVSRFPRST 180
           QQSA+GAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKRTRT DERYGSDKKA+VS F RST
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 181 PDPAGLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVAN 240
           PDP GLGSTHMSGM NSAY+TIGYPSAQSHGSFD KTVNDTVAANVTPQNPPCPT+FVAN
Sbjct: 181 PDP-GLGSTHMSGMGNSAYNTIGYPSAQSHGSFDSKTVNDTVAANVTPQNPPCPTLFVAN 240

Query: 241 LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSP 300
           LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSP
Sbjct: 241 LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSP 300

Query: 301 PGEGMRLEYAKSRMGMRRKSK 304
           PGEGMRLEYAKSRMGMR+K K
Sbjct: 301 PGEGMRLEYAKSRMGMRKKLK 320

[Close]

BLAST of Sed0018726.2 vs. ExPASy TrEMBL
Match: A0A0A0KLD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G491040 PE=4 SV=1)

HSP 1 Score: 514.2 bits (1323), Expect = 3.6e-142
Identity = 265/317 (83.60%), Postives = 280/317 (88.33%), Query Frame = 0


Query: 1   MDEMANYYPAP-PPAPASGLEAPTYSYYQAP-----PSSQHY----PPTFASYA---LPH 60
           MD+M +YYP P PP   SGLE P Y YYQ P     P SQHY    P TFASYA   LPH
Sbjct: 1   MDDMTSYYPPPQPPPQPSGLEPPHYPYYQVPPPPSAPPSQHYLSQHPSTFASYALPLLPH 60

Query: 61  AASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSA 120
             S N+VRTLFIAGLPEDVKPREIYNLFR+FPGYESSHLRTPTQTTQPFAFAVFSDQQSA
Sbjct: 61  TTSINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQSA 120

Query: 121 IGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRT-DERYGSDKKARVSRFPRSTPDPA 180
           +GAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKRTRT +ERYGSDKKA+VS  PRSTPDPA
Sbjct: 121 VGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEEERYGSDKKAKVSIIPRSTPDPA 180

Query: 181 GLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPS 240
           GLGSTHMSGM NSAY+TIGYPSAQSHGSFD KTVNDTVAANV PQNPPCPT+FVANLGP 
Sbjct: 181 GLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPG 240

Query: 241 CTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEG 300
           CTEQELIQIF RCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSPPGEG
Sbjct: 241 CTEQELIQIFLRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPGEG 300

Query: 301 MRLEYAKSRMGMRRKSK 304
           MRLEYAKSRMGMR+K K
Sbjct: 301 MRLEYAKSRMGMRKKPK 317

[Close]

BLAST of Sed0018726.2 vs. ExPASy TrEMBL
Match: A0A6J1BU41 (protein WHI4 OS=Momordica charantia OX=3673 GN=LOC111005791 PE=4 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 8.1e-142
Identity = 268/320 (83.75%), Postives = 286/320 (89.38%), Query Frame = 0


Query: 1   MDEMANYYPAPPPAP---ASGLEAPTYSYYQAP------PSSQHY----PPTFASYA--- 60
           MD+MA++YP PP AP    SGLEAP Y YYQ P      P SQHY    PPTFA+Y    
Sbjct: 1   MDDMASFYPPPPQAPPPQPSGLEAPHYPYYQVPPPPSSAPPSQHYLAQHPPTFATYGLPF 60

Query: 61  LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQ 120
           LPHAAS N+VRTLFIAGLPEDVKPREIYNLFR+FPGYESSHLR+PTQTTQPFAFAVFSDQ
Sbjct: 61  LPHAASPNEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQ 120

Query: 121 QSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRT-DERYGSDKKARVSRFPRSTP 180
           QSAIGAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKRTRT DERYGSDKKA+VS F RSTP
Sbjct: 121 QSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSMFSRSTP 180

Query: 181 DPAGLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANL 240
           D +GLGSTHMSGM NSAY+TIGYPSAQSHGSFD K+VNDTVAANVTPQNPPCPT+FVANL
Sbjct: 181 D-SGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKSVNDTVAANVTPQNPPCPTLFVANL 240

Query: 241 GPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPP 300
           GPSCTEQELIQ FSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSPP
Sbjct: 241 GPSCTEQELIQTFSRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPP 300

Query: 301 GEGMRLEYAKSRMGMRRKSK 304
           GEGMRLEYAKSRMGMR+K K
Sbjct: 301 GEGMRLEYAKSRMGMRKKLK 319

[Close]

BLAST of Sed0018726.2 vs. TAIR 10
Match: AT2G42240.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 296.6 bits (758), Expect = 2.3e-80
Identity = 171/313 (54.63%), Postives = 214/313 (68.37%), Query Frame = 0


Query: 1   MDEMANYY-----PAPPPAPASGLEAPTYSYYQAPPSSQH--YPPTFASYALPHAASFND 60
           MD++  YY     PA  P P  G+          P +S H  Y PT  S       + ++
Sbjct: 1   MDDLEAYYSHYNLPAMVPPPPPGVS-------PIPITSAHSVYLPTHVS-----IGARDE 60

Query: 61  VRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMHA 120
           VRTLF+AGLPEDVKPREIYNLFR+FPGYE+SHLR+ +   +PFAFAVFSD QSA+  MHA
Sbjct: 61  VRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRS-SDGAKPFAFAVFSDLQSAVAVMHA 120

Query: 121 VNGMVFDLEKQSVLYVDLAKANSRSKRTRTDERYGSDKKARVSRFPRSTPDPAGLGSTHM 180
           +NGMVFDLEK S L++DLAK+N +SKR+RTD+ + S KK +      +T   +G GS   
Sbjct: 121 LNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGWESLKKLK----SWNTTTESGFGSFQT 180

Query: 181 SGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNP-----PCPTVFVANLGPSCT 240
            GMS+SAY+TIGY  AQS G      + +      T + P     PCPT+F+AN+GP+CT
Sbjct: 181 PGMSSSAYNTIGYSPAQSQG------IANVAGRAPTSRKPSKAADPCPTLFIANMGPNCT 240

Query: 241 EQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMR 300
           E ELIQ+FSRC GFLKLK+Q TYG PVAF DFQD +CSS A++ LQGTVLYSS  GE +R
Sbjct: 241 EAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTVLYSSLTGEVLR 290

Query: 301 LEYAKSRMGMRRK 302
           L+YA+SRMGMR+K
Sbjct: 301 LQYARSRMGMRKK 290

[Close]

BLAST of Sed0018726.2 vs. TAIR 10
Match: AT2G42240.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 286.2 bits (731), Expect = 3.1e-77
Identity = 169/313 (53.99%), Postives = 211/313 (67.41%), Query Frame = 0


Query: 1   MDEMANYY-----PAPPPAPASGLEAPTYSYYQAPPSSQH--YPPTFASYALPHAASFND 60
           MD++  YY     PA  P P  G+          P +S H  Y PT  S       + ++
Sbjct: 1   MDDLEAYYSHYNLPAMVPPPPPGVS-------PIPITSAHSVYLPTHVS-----IGARDE 60

Query: 61  VRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMHA 120
           VRTLF+AGLPEDVKPREIYNLFR+FPGYE+SHLR+ +   +PFAFAVFSD QSA+  MHA
Sbjct: 61  VRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRS-SDGAKPFAFAVFSDLQSAVAVMHA 120

Query: 121 VNGMVFDLEKQSVLYVDLAKANSRSKRTRTDERYGSDKKARVSRFPRSTPDPAGLGSTHM 180
           +NGMVFDLEK S L++DLAK+N +SKR+RTD+ + S KK +      +T   +G GS   
Sbjct: 121 LNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGWESLKKLK----SWNTTTESGFGSFQT 180

Query: 181 SGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNP-----PCPTVFVANLGPSCT 240
            GMS+SAY+TIGY  AQS G      + +      T + P     PCPT+F+AN+GP+CT
Sbjct: 181 PGMSSSAYNTIGYSPAQSQG------IANVAGRAPTSRKPSKAADPCPTLFIANMGPNCT 240

Query: 241 EQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMR 300
           E ELIQ+FSRC GFLKLK+Q TYG PVAF DFQD +CSS A++ LQGTVLYSS  GE +R
Sbjct: 241 EAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTVLYSSLTGEVLR 287

Query: 301 LEYAKSRMGMRRK 302
           L+   SRMGMR+K
Sbjct: 301 LQ---SRMGMRKK 287

[Close]

BLAST of Sed0018726.2 vs. TAIR 10
Match: AT2G42240.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 281.6 bits (719), Expect = 7.6e-76
Identity = 163/303 (53.80%), Postives = 204/303 (67.33%), Query Frame = 0


Query: 1   MDEMANYY-----PAPPPAPASGLEAPTYSYYQAPPSSQH--YPPTFASYALPHAASFND 60
           MD++  YY     PA  P P  G+          P +S H  Y PT  S       + ++
Sbjct: 1   MDDLEAYYSHYNLPAMVPPPPPGVS-------PIPITSAHSVYLPTHVS-----IGARDE 60

Query: 61  VRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMHA 120
           VRTLF+AGLPEDVKPREIYNLFR+FPGYE+SHLR+ +   +PFAFAVFSD QSA+  MHA
Sbjct: 61  VRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRS-SDGAKPFAFAVFSDLQSAVAVMHA 120

Query: 121 VNGMVFDLEKQSVLYVDLAKANSRSKRTRTDERYGSDKKARVSRFPRSTPDPAGLGSTHM 180
           +NGMVFDLEK S L++DLAK+N +SKR+RTD+ + S KK +      +T   +G GS   
Sbjct: 121 LNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGWESLKKLK----SWNTTTESGFGSFQT 180

Query: 181 SGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNP-----PCPTVFVANLGPSCT 240
            GMS+SAY+TIGY  AQS G      + +      T + P     PCPT+F+AN+GP+CT
Sbjct: 181 PGMSSSAYNTIGYSPAQSQG------IANVAGRAPTSRKPSKAADPCPTLFIANMGPNCT 240

Query: 241 EQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMR 292
           E ELIQ+FSRC GFLKLK+Q TYG PVAF DFQD +CSS A++ LQGTVLYSS  GE +R
Sbjct: 241 EAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTVLYSSLTGEVLR 280

[Close]

BLAST of Sed0018726.2 vs. TAIR 10
Match: AT3G13700.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 152.5 bits (384), Expect = 5.3e-37
Identity = 104/283 (36.75%), Postives = 146/283 (51.59%), Query Frame = 0


Query: 27  YQAPPSSQHYPPTFASYALPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHL 86
           YQ      H PP     A    A    + TLF++GLP DVK REI+NLFR   G+ES  L
Sbjct: 13  YQLHSHPHHLPPQLPLLADEPGA----INTLFVSGLPNDVKAREIHNLFRRRHGFESCQL 72

Query: 87  RTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSK------- 146
           +   +  Q  AFA F+  + A+ AM+ +NG+ FD +  S L+++LA++NSR K       
Sbjct: 73  KYTGRGDQVVAFATFTSHRFALAAMNELNGVKFDPQTGSNLHIELARSNSRRKERPGSGP 132

Query: 147 ------RTRTDERYGSDKKARVSRFPRSTPDPAGLGSTHMSGMSNSAYDTIGYPSAQSHG 206
                 R +   +   D+       P    +P    S   +  + S  D+     A S  
Sbjct: 133 YVVIDNRNKEISKSQDDQSDEGDSDPDEVQEPGNSDSPKENDTTKSEADSEPDSKAPSAN 192

Query: 207 SFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGA 266
               K       A        C T+F+ANLGP+CTE EL Q+ SR PGF  LK+++  G 
Sbjct: 193 GHLEKASEGGSGARA------CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGM 252

Query: 267 PVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMRLEYAKSRM 297
           PVAFADF++   ++ A+NHLQG +L SS  G GM +EYA+S+M
Sbjct: 253 PVAFADFEEIEQATDAMNHLQGNLLSSSDRG-GMHIEYARSKM 284

[Close]

BLAST of Sed0018726.2 vs. TAIR 10
Match: AT3G13700.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 132.9 bits (333), Expect = 4.4e-31
Identity = 100/295 (33.90%), Postives = 139/295 (47.12%), Query Frame = 0


Query: 27  YQAPPSSQHYPPTFASYALPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHL 86
           YQ      H PP     A    A    + TLF++GLP DVK REI+NLFR   G+ES  L
Sbjct: 13  YQLHSHPHHLPPQLPLLADEPGA----INTLFVSGLPNDVKAREIHNLFRRRHGFESCQL 72

Query: 87  R------------------TPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLY 146
           +                   P       AFA F+  + A+ AM+ +NG+ FD +  S L+
Sbjct: 73  KYTGRGDQVCKNLQFLFFFIPIFRKAVVAFATFTSHRFALAAMNELNGVKFDPQTGSNLH 132

Query: 147 VDLAKANSRSK-------------RTRTDERYGSDKKARVSRFPRSTPDPAGLGSTHMSG 206
           ++LA++NSR K             R +   +   D+       P    +P    S   + 
Sbjct: 133 IELARSNSRRKERPGSGPYVVIDNRNKEISKSQDDQSDEGDSDPDEVQEPGNSDSPKEND 192

Query: 207 MSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQI 266
            + S  D+     A S      K       A        C T+F+ANLGP+CTE EL Q+
Sbjct: 193 TTKSEADSEPDSKAPSANGHLEKASEGGSGARA------CSTLFIANLGPNCTEDELKQL 252

Query: 267 FSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMRLE 291
            SR PGF  LK+++  G PVAFADF++   ++ A+NHLQG +L SS  G GM +E
Sbjct: 253 LSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLSSSDRG-GMHIE 296

The following BLAST results are available for this feature:

BLAST of Sed0018726.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023543722.1	3.6e-144	83.80	uncharacterized protein LOC111803516 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_038881693.1	4.7e-144	84.91	protein WHI4 isoform X1 [Benincasa hispida]	[more]
XP_022949756.1	6.1e-144	83.80	U1 small nuclear ribonucleoprotein A isoform X1 [Cucurbita moschata]	[more]
XP_022977595.1	5.2e-143	83.49	U1 small nuclear ribonucleoprotein A isoform X2 [Cucurbita maxima]	[more]
XP_023543723.1	2.6e-142	83.49	protein WHI4 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0018726.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DH13	3.6e-14	43.33	RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a...	[more]
Q9W6I1	4.7e-14	43.33	RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 ...	[more]
Q9YGP5	6.2e-14	43.33	RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2...	[more]
Q93062	2.4e-13	43.33	RNA-binding protein with multiple splicing OS=Homo sapiens OX=9606 GN=RBPMS PE=1...	[more]
Q9WVB0	2.4e-13	43.33	RNA-binding protein with multiple splicing OS=Mus musculus OX=10090 GN=Rbpms PE=...	[more]

BLAST of Sed0018726.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GCW9	3.0e-144	83.80	U1 small nuclear ribonucleoprotein A isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1IMS7	2.5e-143	83.49	U1 small nuclear ribonucleoprotein A isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1GD02	2.1e-142	83.49	protein WHI4 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453048 PE=4 SV=1	[more]
A0A0A0KLD8	3.6e-142	83.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G491040 PE=4 SV=1	[more]
A0A6J1BU41	8.1e-142	83.75	protein WHI4 OS=Momordica charantia OX=3673 GN=LOC111005791 PE=4 SV=1	[more]

BLAST of Sed0018726.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42240.1	2.3e-80	54.63	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.3	3.1e-77	53.99	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.2	7.6e-76	53.80	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13700.2	5.3e-37	36.75	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13700.1	4.4e-31	33.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 56..128 e-value: 8.2E-8 score: 42.0 coord: 217..286 e-value: 0.0012 score: 28.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 218..280 e-value: 2.4E-7 score: 30.5 coord: 57..120 e-value: 3.9E-10 score: 39.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 216..294 score: 11.008294
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 55..134 score: 11.946341
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 52..144 e-value: 2.5E-20 score: 74.4
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 207..302 e-value: 5.8E-17 score: 63.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..158
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 6..289
None	No IPR available	PANTHER	PTHR10501:SF43	RNA-BINDING PROTEIN-RELATED	coord: 6..289
None	No IPR available	CDD	cd12420	RRM_RBPMS_like	coord: 55..130 e-value: 1.35098E-29 score: 105.815
None	No IPR available	CDD	cd12245	RRM_scw1_like	coord: 214..293 e-value: 7.64383E-39 score: 129.632
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 53..281

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0018726	Sed0018726	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0018726.2-three_prime_utr	Sed0018726.2-three_prime_utr-LG10:4494107..4494278	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0018726.2-exon	Sed0018726.2-exon-LG10:4494107..4494321	exon
Sed0018726.2-exon	Sed0018726.2-exon-LG10:4494410..4494495	exon
Sed0018726.2-exon	Sed0018726.2-exon-LG10:4494741..4494810	exon
Sed0018726.2-exon	Sed0018726.2-exon-LG10:4494899..4494987	exon
Sed0018726.2-exon	Sed0018726.2-exon-LG10:4495735..4495786	exon
Sed0018726.2-exon	Sed0018726.2-exon-LG10:4496021..4496096	exon
Sed0018726.2-exon	Sed0018726.2-exon-LG10:4496378..4496443	exon
Sed0018726.2-exon	Sed0018726.2-exon-LG10:4496547..4496631	exon
Sed0018726.2-exon	Sed0018726.2-exon-LG10:4497981..4498043	exon
Sed0018726.2-exon	Sed0018726.2-exon-LG10:4499052..4499350	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0018726.2-cds	Sed0018726.2-cds-LG10:4494279..4494321	CDS
Sed0018726.2-cds	Sed0018726.2-cds-LG10:4494410..4494495	CDS
Sed0018726.2-cds	Sed0018726.2-cds-LG10:4494741..4494810	CDS
Sed0018726.2-cds	Sed0018726.2-cds-LG10:4494899..4494987	CDS
Sed0018726.2-cds	Sed0018726.2-cds-LG10:4495735..4495786	CDS
Sed0018726.2-cds	Sed0018726.2-cds-LG10:4496021..4496096	CDS
Sed0018726.2-cds	Sed0018726.2-cds-LG10:4496378..4496443	CDS
Sed0018726.2-cds	Sed0018726.2-cds-LG10:4496547..4496631	CDS
Sed0018726.2-cds	Sed0018726.2-cds-LG10:4497981..4498043	CDS
Sed0018726.2-cds	Sed0018726.2-cds-LG10:4499052..4499333	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0018726.2-five_prime_utr	Sed0018726.2-five_prime_utr-LG10:4499334..4499350	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0018726.2	Sed0018726.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003729	mRNA binding