Sed0018726.1 (mRNA) Chayote v1

Overview


Name	Sed0018726.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	U1 small nuclear ribonucleoprotein A isoform X2
Location	LG10: 4494107 .. 4499350 (-)
Sequence length	1101
RNA-Seq Expression	Sed0018726.1
Synteny	Sed0018726.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAGAACTGCTCTCCGATGGACGAAATGGCGAACTACTATCCGGCGCCACCACCGGCGCCGGCGTCTGGTCTCGAAGCTCCGACCTATTCGTATTACCAGGCGCCACCGTCGTCTCAGCATTACCCTCCCACCTTCGCTTCCTACGCCTTACCTCACGCAGCGTCCTTCAATGACGTCCGAACCTTATTCATCGCCGGCCTGCCTGAAGATGTCAAGCCCCGAGAAATCTACAATCTCTTCCGCGACTTTCCCGGATACGAGTCCTCTCATCTTCGGACCCCTACCCAGACGACGCAGGTATTGTTTTTTGCTTTTTCTAATTTCCCAAATTGGCGATTCTTGTGGAATTTTCCTTTTCTCAAGAACGTGAATCGTCTCTAATTTTGGCGTCTGAATGCCCTTAGCTTTTCTTATAGGGTTTAATGTTTGAGTTATCTCGTGGCCATTTAGTTGCTCCAGGATTTTTCTTAGGGAATAAGAAAATAGGTAATTGACCCAACCGAAACTGCAAAACACCTCCCACAGACTAAAAAAGAGGTGTAAATGGTTGAGCCCTGGGGCGTTGTCTTAGGGTTCGAGGCAGCTCTGTAAATTAATTTTAAAGGGCACCCCAAATTTCGTCTCTGGCCTTGAGATATATCCTGGTACCACATTCTAAGGACGAGGTAGTGGTGCTCTGATTTAGAAAAGCAAAGTTTTAAGTTCCCAAGCTATATAAAAAAAAAAAGAAGAGGTGTAAGTGAAACTATCATGGTGTAAAAGGGGAGAACCCTTGCAAATGAGTTGATGGGTAATTCTAGAAAGTTTACTGATTAAATACTGGCTCACAAAGTCCCCAAGGGGTGACACAGTGGTTGAAGTCTTGGGCTTTGAAGGTATGCTTTCTTCAAGGTCTCAGGTTCGAGACTCAATTGTGACATTACTCCTTCAATGTCTCCCGGTGCCTAGCCTAGGGATGGGTGTGGTTACCTTTGTTTCAAAAAAAAAAGTATTGATTCACATACTTTTGGTTAGGTTAAATTAAGTTTTTTTTTGACACATGTAATTGTTCAAGCCGGTTTACACATATGGACTATTCTACCTGTTACAAATTAGTCGAGGGGTATTTCTTAAATAGAGGAAACTCCCCGATGATGAGGAATATAATATGAAGATTCTCCCTTTAAAATATTAAATTCGTTGATGCTCGGATAATTTTATGCATACAGTATATGTATCACTACTGTGTTGGTGGTTGACCTTATGTTTTATTGATTAGGGTAGTGCATGTATTTTCTTACAAATTTTTTTTCGGTGTGGTTACAGCCCTTTGCATTTGCTGTATTTTCGGACCAGCAGTCTGCCATTGGTGCAATGCATGCTGTAAATGTAAGTACTTCTTCCCTACAGCTGTATTTTTTCAAGTTCTTTGGATAGGAAAATCATATCAATGATCAAAGGAAATAAGGAAAAGGAACATGGAAGAAGAATTTAGCCCTGTCTTGGAATAAGCTACACTTCATCTTCAATCAGAACAGCTAGGAAAGCAGACCACTTCATAATAGTAACTGCAATACACTATAAGAACTATCAAAGTATCTTGCGATTTAAGAAAATGATTTATTCCTCTTTTCCTTTTAATTACAGCCCAGAAAGAATTCAAAGTTTTAATTCATGAAGTTCTTAAAACTTTGTTGCTCTCTGAATGTTGCTACTACAAGACATTGGCAAGCATGCATGATCAAAGAACATTCTTTTTTTAAAATTTTTCTTTTTGTTGTAATTTTGTAAACTAATCTTCCAAACAGTTTCATCGAAGTATTGAAGTTACAACATCAAGGAACTCTTGCCAATTTGTTTGAAATCCTTTTAACTTATTCTTAACTCCCCGAGTTTGATTTACTATTTTTACCTCACGCTTTGCTCATCATTCATTGACCCTAAAAGATAGCTATTGTTCTGCTATAACACTAAGTTGTTACCGATTCATTGAAGTAATGAAGTTACGCTTACAACTTCAGGGAACTCTTGAGATACACTTAATTTCTTTGAAATCAGGAACTTTGAGTTCGATTTCTTATGTTTACCTTAAAGATAAGGTGGACAACTATTATTACTGCTAATAAGGACTTACATAAGGCTCTGATCATTTGTTTGAGTTAATTCTATATTCTATGTATTTTTGGTGCAAGGACTTGCCCTTTCTGTCCGGTTATAACTTGTCTTTCTTTATTGCGAGTTGGCAACAATTTTGTAAGCCTAATTGGGCCTGGGTAGCCCCCAATATTTCATAATATCAATGAAATGTTTCTGTTTCAAAAAAAAAAAAAAATACTGCTAAAATACTAAACAGTTGCCAATTCATGGTTTAGCCTTTTCTGCTGGGCATTTTCTAGTTGTGCATACGTTCATGGAAAAGGAACTTCCTCTAAGCTCAAGCATCTAAAAAATCTTTCGTCTTGTTTTAATATTTTCTTCCCAAAAAGTATCAAGTAAAATTTGACCATCTAAATTATTTTTAGATGGTCGTTCAATTTTCTTCCCTCCAAATCTTTATCCTATTCGTTTTAGGCAGATCTCTTTTATCCAATTAAATTTTCTTTCTTCTTAATCTTTGCGGTCAATTGTTCGTTCTTTTAACTCTGCTAACAATGATTATAAGATTAGAAATTGAAGGGATGAAATGGTAGATGTAATATCTGAAAATATGTTTCTTAAGCTTCTCCACTCTTCTTCAGGGCATGGTGTTTGATCTTGAGAAGCAGTCAGTTCTCTATGTCGATTTAGCTAAAGCCAATTCAAGATCCAAGCGGACGAGGACAGGTACATATCTTGATGGCTGTCATCTTATGAATTTATCCTTTTATTTAATTTAATGGTATAACAAATTGAAAATTTTCTTGTTGACGTGTTGCATGATTAGAAGATGAAAGATATGGATCAGATAAGAAGGCTAGAGTATCTAGGTTTCCAAGGAGCACTCCCGATCCTGGTAAGATGGTTGCTTGACATTCTTTATGCCGGTGAAGTGTAAACTATTTCTTTTACTAACTTTTTAGTTTATTTCTTAAATATTCTATCATCTTGATGACCCTCACAGAAACTATTATTATGATTATTTTTAATATACAAATCTGCCCCCTCTGATTTATTTGATGCTGATTATGTGCTGCTTGTATAACCTCTTTGAGTAAGAAGTAATGAATTAGTCACGCAGAGGACACATTATTCTAAAAGCTCACTTTGCACATGGTTTGCACGCTTGGGCACTAGCAGGTCTTGGCAGCACTCACATGTCTGGAATGAGTAATTCTGCTTACGACACGATTGGTTATCCATCTGCACAAAGGTCATCTGCACTACTTAGCACATTTTTATTATTGAAATGGTTATTTACAAGCATGTGTGAATGAAGCTTATACATTGTTGTATAACAATATTCACTAGTAGAAAGGCCAAGGGCTTTAGTAAGAAGCTCTTTTCTACACGCCCTGATTCCTGTGTTATGTTTTTAACTTTTCCTTACTTTCTTCTTTGTGTTTCTTCTTATGATTTCTAACTAAGTTGTATTTTCTATCATCAGCCATGGAAGCTTTGATTACAAAACTGTAAATGATACAGTGGCTGCAAATGTGGTAAGGTCACTTTTTTGTTACAATCTGGGATTCTTTAGTCCTTAGTTCTTACATTCTGTCCTTGGGTTATGATTCAAATTTTTTTTGTAACTTTTCTATTACCAAAATGGAATCCTTTCTTGTAAGCTGTTTTTTGTTCTGGGCTTTTCTTGTAAGTTGCTTTTTGTCCTGCACTTTTCTTTTCGTTTTCTCTTTGTACTTTTAGATTTCTAGTGAAAATTTAAGAGTTAGTTTTCTCATTCCAAAATAACTATCGGCCTAAGAGTACTATAAATTACTTGGAAAGAATGAGTTCAATCTATGGTAGTTAGGGTCAGGCGATGGTCTGTGGGATTACTTGAAGTGTGGCACATAAAATGGCACGCACTCTCACAGATTTAAAAGAAATCACTAAAAAGGAAGGCCTAGCCGCTTCGTAAAATTTATTTAACCTTGAAGTTCTACAATAATATTTCTACATACTCCTTTTGTTTTTTGTTCTCTTTTGGAGAGGAGGGGAGTTCTGGGAATTTGGCTGCAGTGCATATTAGAACTGGATAATTTAAAGATTTTCCTTGAACAGCTAGTGATTCATTGAAAATGTATGTATTGCATTATAATTCTGCTATCATATATTTTTATATTTAGACGTAAATAAAGTTGCGTTGTGCTTAGGCCAAAACATCCGAGTCATGCTTGATTGAATTTTTATAGAACAATGTATTTAGTGAATCTGTTAACATCGACCGGATTATTCTTCTTTTCCAGACGCCTCAAAATCCCCCTTGTCCAACAGTTTTTGTGGCGAATCTAGGGCCAAGTTGCACAGAGCAAGAGCTGATTCAAATTTTTTCAAGGTTGGTAATTTTACTGCATATTATTTGGGTTATGTTCTGAACATGCAAGAACAGGCATCATCTGTTTATTTGATATAATTCCTTCCAGATGCCCAGGGTTCTTAAAACTGAAGATGCAGAGCACGTATGGGGCTCCAGTTGCTTTTGCCGATTTTCAGGTTAGAAGTCCTTCGTATATATATTTATTTTGACAACCAAGAATCCGAGCAGCACCCCACTATATACTTGGAGACTCATGCCCATCTCAAGATCCTGATGATTGAGACAACAATGAATCTTACAAGAAAGCATACTTTAGAGACGTCAAGCCTCTACTAACGAGGCCGCCCTGACATTGCATTCTAAGTTTTTGCGCTCTAATAACTTCATTAGATCATTGATATGTTGTGTGAAATGTGTGTAGGATACAGCCTGTTCATCTGGAGCAGTGAATCATTTGCAAGGCACAGTTCTGTACTCGTCACCTCCAGGAGAGGGCATGCGATTGGAGTATCCTTGTACAAAGTTGTTTTTCTTTAATTAAAATTCTACTGCTACACATAATGTCTTCAAATGTTTTGCTTAACCCGAAATTCAGGTACGCAAAATCTCGAATGGGTATGCGTAGGAAATCGAAATGAATAATACAATACTTGCAGACATGACTGCAGCCAACATGGAAGAAAAGAGAGAGGCCCTCAGGCCATGTTACCAGCCAGAGGATGTGCATTATTTGTATTGTTCTATCTAGATGAGCAAATTTGCAACATATGCCATGCCCATTTTATTTTTTCATTGTATCAAATCCTGGCC

mRNA sequence

CAGAGAACTGCTCTCCGATGGACGAAATGGCGAACTACTATCCGGCGCCACCACCGGCGCCGGCGTCTGGTCTCGAAGCTCCGACCTATTCGTATTACCAGGCGCCACCGTCGTCTCAGCATTACCCTCCCACCTTCGCTTCCTACGCCTTACCTCACGCAGCGTCCTTCAATGACGTCCGAACCTTATTCATCGCCGGCCTGCCTGAAGATGTCAAGCCCCGAGAAATCTACAATCTCTTCCGCGACTTTCCCGGATACGAGTCCTCTCATCTTCGGACCCCTACCCAGACGACGCAGCCCTTTGCATTTGCTGTATTTTCGGACCAGCAGTCTGCCATTGGTGCAATGCATGCTGTAAATGGCATGGTGTTTGATCTTGAGAAGCAGTCAGTTCTCTATGTCGATTTAGCTAAAGCCAATTCAAGATCCAAGCGGACGAGGACAGAAGATGAAAGATATGGATCAGATAAGAAGGCTAGAGTATCTAGGTTTCCAAGGAGCACTCCCGATCCTGGTCTTGGCAGCACTCACATGTCTGGAATGAGTAATTCTGCTTACGACACGATTGGTTATCCATCTGCACAAAGCCATGGAAGCTTTGATTACAAAACTGTAAATGATACAGTGGCTGCAAATGTGACGCCTCAAAATCCCCCTTGTCCAACAGTTTTTGTGGCGAATCTAGGGCCAAGTTGCACAGAGCAAGAGCTGATTCAAATTTTTTCAAGATGCCCAGGGTTCTTAAAACTGAAGATGCAGAGCACGTATGGGGCTCCAGTTGCTTTTGCCGATTTTCAGGATACAGCCTGTTCATCTGGAGCAGTGAATCATTTGCAAGGCACAGTTCTGTACTCGTCACCTCCAGGAGAGGGCATGCGATTGGAGTACGCAAAATCTCGAATGGGTATGCGTAGGAAATCGAAATGAATAATACAATACTTGCAGACATGACTGCAGCCAACATGGAAGAAAAGAGAGAGGCCCTCAGGCCATGTTACCAGCCAGAGGATGTGCATTATTTGTATTGTTCTATCTAGATGAGCAAATTTGCAACATATGCCATGCCCATTTTATTTTTTCATTGTATCAAATCCTGGCC

Coding sequence (CDS)

ATGGACGAAATGGCGAACTACTATCCGGCGCCACCACCGGCGCCGGCGTCTGGTCTCGAAGCTCCGACCTATTCGTATTACCAGGCGCCACCGTCGTCTCAGCATTACCCTCCCACCTTCGCTTCCTACGCCTTACCTCACGCAGCGTCCTTCAATGACGTCCGAACCTTATTCATCGCCGGCCTGCCTGAAGATGTCAAGCCCCGAGAAATCTACAATCTCTTCCGCGACTTTCCCGGATACGAGTCCTCTCATCTTCGGACCCCTACCCAGACGACGCAGCCCTTTGCATTTGCTGTATTTTCGGACCAGCAGTCTGCCATTGGTGCAATGCATGCTGTAAATGGCATGGTGTTTGATCTTGAGAAGCAGTCAGTTCTCTATGTCGATTTAGCTAAAGCCAATTCAAGATCCAAGCGGACGAGGACAGAAGATGAAAGATATGGATCAGATAAGAAGGCTAGAGTATCTAGGTTTCCAAGGAGCACTCCCGATCCTGGTCTTGGCAGCACTCACATGTCTGGAATGAGTAATTCTGCTTACGACACGATTGGTTATCCATCTGCACAAAGCCATGGAAGCTTTGATTACAAAACTGTAAATGATACAGTGGCTGCAAATGTGACGCCTCAAAATCCCCCTTGTCCAACAGTTTTTGTGGCGAATCTAGGGCCAAGTTGCACAGAGCAAGAGCTGATTCAAATTTTTTCAAGATGCCCAGGGTTCTTAAAACTGAAGATGCAGAGCACGTATGGGGCTCCAGTTGCTTTTGCCGATTTTCAGGATACAGCCTGTTCATCTGGAGCAGTGAATCATTTGCAAGGCACAGTTCTGTACTCGTCACCTCCAGGAGAGGGCATGCGATTGGAGTACGCAAAATCTCGAATGGGTATGCGTAGGAAATCGAAATGA

Protein sequence

MDEMANYYPAPPPAPASGLEAPTYSYYQAPPSSQHYPPTFASYALPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMRLEYAKSRMGMRRKSK

Homology

[Close]

BLAST of Sed0018726.1 vs. NCBI nr
Match: XP_023543723.1 (protein WHI4 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 526.9 bits (1356), Expect = 1.1e-145
Identity = 269/320 (84.06%), Postives = 287/320 (89.69%), Query Frame = 0


Query: 1   MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA-- 60
           MD++ +YY  P    PP+  SGLEAP Y YYQ P      PSSQHY    PPTFASY   
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLP 60

Query: 61  -LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSD 120
            LPHAAS N+VRTLFIAGLPEDVKPREIYNLFR+FPGYESSHLR+PTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRST 180
           QQSA+GAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKRTRTEDERYGSDKKA+VS F RST
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 181 PDPGLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANL 240
           PDPGLGSTHMSGM NSAY+TIGYPSAQSHGSFD KTVNDTVAANVTPQNPPCPT+FVANL
Sbjct: 181 PDPGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDSKTVNDTVAANVTPQNPPCPTLFVANL 240

Query: 241 GPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPP 300
           GPSCTEQEL+QIFSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSPP
Sbjct: 241 GPSCTEQELVQIFSRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPP 300

Query: 301 GEGMRLEYAKSRMGMRRKSK 304
           GEGMRLEYAKSRMGMR+K K
Sbjct: 301 GEGMRLEYAKSRMGMRKKLK 320

[Close]

BLAST of Sed0018726.1 vs. NCBI nr
Match: XP_038881694.1 (protein WHI4 isoform X2 [Benincasa hispida])

HSP 1 Score: 526.6 bits (1355), Expect = 1.5e-145
Identity = 270/317 (85.17%), Postives = 284/317 (89.59%), Query Frame = 0


Query: 1   MDEMANYYPAP-PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA---LP 60
           MD+MA+YYP P PP   SGLE P Y +YQ P      P SQHY    PPTFASY    LP
Sbjct: 1   MDDMASYYPQPQPPPQPSGLEPPHYPFYQVPPPPSSAPPSQHYLSQHPPTFASYGLPFLP 60

Query: 61  HAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQS 120
           HAAS N+VRTLFIAGLPEDVKPREIYNLFR+FPGYESSHLRTPTQTTQPFAFAVFSDQQS
Sbjct: 61  HAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRTPTQTTQPFAFAVFSDQQS 120

Query: 121 AIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDP 180
           AIGAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKRTRTEDERYGSDKKA+VS F RSTPDP
Sbjct: 121 AIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRSTPDP 180

Query: 181 GLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPS 240
           GLGSTHMSGM NSAY+TIGYPSAQSHGSFD KTVNDTVAANV PQNPPCPT+FVANLGPS
Sbjct: 181 GLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVIPQNPPCPTLFVANLGPS 240

Query: 241 CTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEG 300
           CTEQELIQIFSRCPGFLKLKMQSTYGAPVAF DFQDT CS+GA+NHLQG++LYSSPPGEG
Sbjct: 241 CTEQELIQIFSRCPGFLKLKMQSTYGAPVAFVDFQDTGCSTGALNHLQGSILYSSPPGEG 300

Query: 301 MRLEYAKSRMGMRRKSK 304
           MRLEYAKSRMGMR+K K
Sbjct: 301 MRLEYAKSRMGMRKKLK 317

[Close]

BLAST of Sed0018726.1 vs. NCBI nr
Match: XP_022949757.1 (protein WHI4 isoform X2 [Cucurbita moschata])

HSP 1 Score: 526.2 bits (1354), Expect = 1.9e-145
Identity = 269/320 (84.06%), Postives = 287/320 (89.69%), Query Frame = 0


Query: 1   MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA-- 60
           MD++ +YY  P    PP+  SGLEAP Y YYQ P      PSSQHY    PPTFASY   
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLP 60

Query: 61  -LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSD 120
            LPHAAS N+VRTLFIAGLP+DVKPREIYNLFR+FPGYESSHLR+PTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRST 180
           QQSA+GAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKRTRTEDERYGSDKKA+VS F RST
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 181 PDPGLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANL 240
           PDPGLGSTHMSGM NSAY+TIGYPSAQSHGSFD KTVNDTVAANVTPQNPPCPT+FVANL
Sbjct: 181 PDPGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDSKTVNDTVAANVTPQNPPCPTLFVANL 240

Query: 241 GPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPP 300
           GPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSPP
Sbjct: 241 GPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPP 300

Query: 301 GEGMRLEYAKSRMGMRRKSK 304
           GEGMRLEYAKSRMGMR+K K
Sbjct: 301 GEGMRLEYAKSRMGMRKKLK 320

[Close]

BLAST of Sed0018726.1 vs. NCBI nr
Match: XP_022133116.1 (protein WHI4 [Momordica charantia])

HSP 1 Score: 523.5 bits (1347), Expect = 1.2e-144
Identity = 269/319 (84.33%), Postives = 286/319 (89.66%), Query Frame = 0


Query: 1   MDEMANYYPAPPPAP---ASGLEAPTYSYYQAP------PSSQHY----PPTFASYA--- 60
           MD+MA++YP PP AP    SGLEAP Y YYQ P      P SQHY    PPTFA+Y    
Sbjct: 1   MDDMASFYPPPPQAPPPQPSGLEAPHYPYYQVPPPPSSAPPSQHYLAQHPPTFATYGLPF 60

Query: 61  LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQ 120
           LPHAAS N+VRTLFIAGLPEDVKPREIYNLFR+FPGYESSHLR+PTQTTQPFAFAVFSDQ
Sbjct: 61  LPHAASPNEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQ 120

Query: 121 QSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTP 180
           QSAIGAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKRTRTEDERYGSDKKA+VS F RSTP
Sbjct: 121 QSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSMFSRSTP 180

Query: 181 DPGLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLG 240
           D GLGSTHMSGM NSAY+TIGYPSAQSHGSFD K+VNDTVAANVTPQNPPCPT+FVANLG
Sbjct: 181 DSGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKSVNDTVAANVTPQNPPCPTLFVANLG 240

Query: 241 PSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPG 300
           PSCTEQELIQ FSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSPPG
Sbjct: 241 PSCTEQELIQTFSRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPG 300

Query: 301 EGMRLEYAKSRMGMRRKSK 304
           EGMRLEYAKSRMGMR+K K
Sbjct: 301 EGMRLEYAKSRMGMRKKLK 319

[Close]

BLAST of Sed0018726.1 vs. NCBI nr
Match: XP_022977593.1 (protein WHI4 isoform X1 [Cucurbita maxima])

HSP 1 Score: 523.1 bits (1346), Expect = 1.6e-144
Identity = 268/320 (83.75%), Postives = 285/320 (89.06%), Query Frame = 0


Query: 1   MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA-- 60
           MD++ +YY  P    PP+  SGLEAP Y YYQ P      PSSQHY    PPTFASY   
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLP 60

Query: 61  -LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSD 120
            LPHAAS N+VRTLFIAGLPEDVKPREIYNLFR+FPGYESSHLR+PTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRST 180
           QQSA+GAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKR RTEDERYGSDKKA+VS F R T
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRMRTEDERYGSDKKAKVSIFSRRT 180

Query: 181 PDPGLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANL 240
           PDPGLGSTHMSGM NSAY+TIGYPSAQSHGSFD KTVNDTVAANVTPQNPPCPT+FVANL
Sbjct: 181 PDPGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVTPQNPPCPTLFVANL 240

Query: 241 GPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPP 300
           GPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSPP
Sbjct: 241 GPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPP 300

Query: 301 GEGMRLEYAKSRMGMRRKSK 304
           GEGMRLEYAKSRMGMR+K K
Sbjct: 301 GEGMRLEYAKSRMGMRKKLK 320

[Close]

BLAST of Sed0018726.1 vs. ExPASy Swiss-Prot
Match: Q8VC52 (RNA-binding protein with multiple splicing 2 OS=Mus musculus OX=10090 GN=Rbpms2 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.6e-14
Identity = 39/90 (43.33%), Postives = 60/90 (66.67%), Query Frame = 0


Query: 53  DVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMH 112
           +VRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F +F  +  A  A +
Sbjct: 23  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAKN 82

Query: 113 AVNGMVFDLEKQSVLYVDLAKANSRSKRTR 143
           A+NG+ FD E    L ++ AKAN++  +++
Sbjct: 83  ALNGIRFDPENPQTLRLEFAKANTKMAKSK 110

[Close]

BLAST of Sed0018726.1 vs. ExPASy Swiss-Prot
Match: Q6ZRY4 (RNA-binding protein with multiple splicing 2 OS=Homo sapiens OX=9606 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.1e-14
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 53  DVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMH 112
           +VRTLF++GLP D+KPRE+Y LFR F GYE S ++   +  QP  F +F  +  A  A +
Sbjct: 29  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTAR--QPVGFVIFDSRAGAEAAKN 88

Query: 113 AVNGMVFDLEKQSVLYVDLAKANSRSKRTR 143
           A+NG+ FD E    L ++ AKAN++  +++
Sbjct: 89  ALNGIRFDPENPQTLRLEFAKANTKMAKSK 116

[Close]

BLAST of Sed0018726.1 vs. ExPASy Swiss-Prot
Match: Q6DH13 (RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.8e-14
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 53  DVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMH 112
           +VRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F  +  A  A +
Sbjct: 18  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRSGAEAAKN 77

Query: 113 AVNGMVFDLEKQSVLYVDLAKANSRSKRTR 143
           A+NG+ FD E    L ++ AKAN++  +++
Sbjct: 78  ALNGIRFDPESPQTLRLEFAKANTKMAKSK 105

[Close]

BLAST of Sed0018726.1 vs. ExPASy Swiss-Prot
Match: Q9W6I1 (RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.6e-14
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 53  DVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMH 112
           +VRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F  +  A  A +
Sbjct: 20  EVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAKN 79

Query: 113 AVNGMVFDLEKQSVLYVDLAKANSRSKRTR 143
           A+NG+ FD E    L ++ AKAN++  +++
Sbjct: 80  ALNGIRFDPENPQTLRLEFAKANTKMAKSK 107

[Close]

BLAST of Sed0018726.1 vs. ExPASy Swiss-Prot
Match: Q9YGP5 (RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.7e-14
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 53  DVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMH 112
           +VRTLF++GLP D+KPRE+Y LFR F GYE S ++  ++  QP  F  F ++  A  A +
Sbjct: 18  EVRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDNRAGAEAAKN 77

Query: 113 AVNGMVFDLEKQSVLYVDLAKANSRSKRTR 143
           A+NG+ FD E    L ++ AKAN++  + +
Sbjct: 78  ALNGIRFDPENPQTLRLEFAKANTKMAKNK 105

[Close]

BLAST of Sed0018726.1 vs. ExPASy TrEMBL
Match: A0A6J1GD02 (protein WHI4 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453048 PE=4 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 9.2e-146
Identity = 269/320 (84.06%), Postives = 287/320 (89.69%), Query Frame = 0


Query: 1   MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA-- 60
           MD++ +YY  P    PP+  SGLEAP Y YYQ P      PSSQHY    PPTFASY   
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLP 60

Query: 61  -LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSD 120
            LPHAAS N+VRTLFIAGLP+DVKPREIYNLFR+FPGYESSHLR+PTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRST 180
           QQSA+GAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKRTRTEDERYGSDKKA+VS F RST
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 181 PDPGLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANL 240
           PDPGLGSTHMSGM NSAY+TIGYPSAQSHGSFD KTVNDTVAANVTPQNPPCPT+FVANL
Sbjct: 181 PDPGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDSKTVNDTVAANVTPQNPPCPTLFVANL 240

Query: 241 GPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPP 300
           GPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSPP
Sbjct: 241 GPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPP 300

Query: 301 GEGMRLEYAKSRMGMRRKSK 304
           GEGMRLEYAKSRMGMR+K K
Sbjct: 301 GEGMRLEYAKSRMGMRKKLK 320

[Close]

BLAST of Sed0018726.1 vs. ExPASy TrEMBL
Match: A0A6J1BU41 (protein WHI4 OS=Momordica charantia OX=3673 GN=LOC111005791 PE=4 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 6.0e-145
Identity = 269/319 (84.33%), Postives = 286/319 (89.66%), Query Frame = 0


Query: 1   MDEMANYYPAPPPAP---ASGLEAPTYSYYQAP------PSSQHY----PPTFASYA--- 60
           MD+MA++YP PP AP    SGLEAP Y YYQ P      P SQHY    PPTFA+Y    
Sbjct: 1   MDDMASFYPPPPQAPPPQPSGLEAPHYPYYQVPPPPSSAPPSQHYLAQHPPTFATYGLPF 60

Query: 61  LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQ 120
           LPHAAS N+VRTLFIAGLPEDVKPREIYNLFR+FPGYESSHLR+PTQTTQPFAFAVFSDQ
Sbjct: 61  LPHAASPNEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSDQ 120

Query: 121 QSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTP 180
           QSAIGAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKRTRTEDERYGSDKKA+VS F RSTP
Sbjct: 121 QSAIGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSMFSRSTP 180

Query: 181 DPGLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLG 240
           D GLGSTHMSGM NSAY+TIGYPSAQSHGSFD K+VNDTVAANVTPQNPPCPT+FVANLG
Sbjct: 181 DSGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKSVNDTVAANVTPQNPPCPTLFVANLG 240

Query: 241 PSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPG 300
           PSCTEQELIQ FSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSPPG
Sbjct: 241 PSCTEQELIQTFSRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPPG 300

Query: 301 EGMRLEYAKSRMGMRRKSK 304
           EGMRLEYAKSRMGMR+K K
Sbjct: 301 EGMRLEYAKSRMGMRKKLK 319

[Close]

BLAST of Sed0018726.1 vs. ExPASy TrEMBL
Match: A0A6J1IQG5 (protein WHI4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477875 PE=4 SV=1)

HSP 1 Score: 523.1 bits (1346), Expect = 7.8e-145
Identity = 268/320 (83.75%), Postives = 285/320 (89.06%), Query Frame = 0


Query: 1   MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA-- 60
           MD++ +YY  P    PP+  SGLEAP Y YYQ P      PSSQHY    PPTFASY   
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLP 60

Query: 61  -LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSD 120
            LPHAAS N+VRTLFIAGLPEDVKPREIYNLFR+FPGYESSHLR+PTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRST 180
           QQSA+GAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKR RTEDERYGSDKKA+VS F R T
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRMRTEDERYGSDKKAKVSIFSRRT 180

Query: 181 PDPGLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANL 240
           PDPGLGSTHMSGM NSAY+TIGYPSAQSHGSFD KTVNDTVAANVTPQNPPCPT+FVANL
Sbjct: 181 PDPGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVTPQNPPCPTLFVANL 240

Query: 241 GPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPP 300
           GPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSPP
Sbjct: 241 GPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSPP 300

Query: 301 GEGMRLEYAKSRMGMRRKSK 304
           GEGMRLEYAKSRMGMR+K K
Sbjct: 301 GEGMRLEYAKSRMGMRKKLK 320

[Close]

BLAST of Sed0018726.1 vs. ExPASy TrEMBL
Match: A0A6J1GCW9 (U1 small nuclear ribonucleoprotein A isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453048 PE=4 SV=1)

HSP 1 Score: 521.5 bits (1342), Expect = 2.3e-144
Identity = 269/321 (83.80%), Postives = 287/321 (89.41%), Query Frame = 0


Query: 1   MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA-- 60
           MD++ +YY  P    PP+  SGLEAP Y YYQ P      PSSQHY    PPTFASY   
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLP 60

Query: 61  -LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSD 120
            LPHAAS N+VRTLFIAGLP+DVKPREIYNLFR+FPGYESSHLR+PTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPDDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRST 180
           QQSA+GAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKRTRTEDERYGSDKKA+VS F RST
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRTRTEDERYGSDKKAKVSIFSRST 180

Query: 181 PDP-GLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVAN 240
           PDP GLGSTHMSGM NSAY+TIGYPSAQSHGSFD KTVNDTVAANVTPQNPPCPT+FVAN
Sbjct: 181 PDPAGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDSKTVNDTVAANVTPQNPPCPTLFVAN 240

Query: 241 LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSP 300
           LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSP
Sbjct: 241 LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSP 300

Query: 301 PGEGMRLEYAKSRMGMRRKSK 304
           PGEGMRLEYAKSRMGMR+K K
Sbjct: 301 PGEGMRLEYAKSRMGMRKKLK 321

[Close]

BLAST of Sed0018726.1 vs. ExPASy TrEMBL
Match: A0A6J1IMS7 (U1 small nuclear ribonucleoprotein A isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477875 PE=4 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 1.9e-143
Identity = 268/321 (83.49%), Postives = 285/321 (88.79%), Query Frame = 0


Query: 1   MDEMANYYPAP----PPAPASGLEAPTYSYYQAP------PSSQHY----PPTFASYA-- 60
           MD++ +YY  P    PP+  SGLEAP Y YYQ P      PSSQHY    PPTFASY   
Sbjct: 1   MDDITSYYAPPPQPQPPSQPSGLEAPHYPYYQVPPPPSSAPSSQHYLAQHPPTFASYGLP 60

Query: 61  -LPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSD 120
            LPHAAS N+VRTLFIAGLPEDVKPREIYNLFR+FPGYESSHLR+PTQTTQPFAFAVFSD
Sbjct: 61  FLPHAASINEVRTLFIAGLPEDVKPREIYNLFREFPGYESSHLRSPTQTTQPFAFAVFSD 120

Query: 121 QQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRST 180
           QQSA+GAMHAVNGMVFDLEKQSVLYVDLAK+NSRSKR RTEDERYGSDKKA+VS F R T
Sbjct: 121 QQSAVGAMHAVNGMVFDLEKQSVLYVDLAKSNSRSKRMRTEDERYGSDKKAKVSIFSRRT 180

Query: 181 PDP-GLGSTHMSGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVAN 240
           PDP GLGSTHMSGM NSAY+TIGYPSAQSHGSFD KTVNDTVAANVTPQNPPCPT+FVAN
Sbjct: 181 PDPAGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANVTPQNPPCPTLFVAN 240

Query: 241 LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSP 300
           LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAF DFQDTACS+GA+NHLQG++LYSSP
Sbjct: 241 LGPSCTEQELIQIFSRCPGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGSILYSSP 300

Query: 301 PGEGMRLEYAKSRMGMRRKSK 304
           PGEGMRLEYAKSRMGMR+K K
Sbjct: 301 PGEGMRLEYAKSRMGMRKKLK 321

[Close]

BLAST of Sed0018726.1 vs. TAIR 10
Match: AT2G42240.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 293.5 bits (750), Expect = 1.9e-79
Identity = 169/313 (53.99%), Postives = 214/313 (68.37%), Query Frame = 0


Query: 1   MDEMANYY-----PAPPPAPASGLEAPTYSYYQAPPSSQH--YPPTFASYALPHAASFND 60
           MD++  YY     PA  P P  G+          P +S H  Y PT  S       + ++
Sbjct: 1   MDDLEAYYSHYNLPAMVPPPPPGVS-------PIPITSAHSVYLPTHVS-----IGARDE 60

Query: 61  VRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMHA 120
           VRTLF+AGLPEDVKPREIYNLFR+FPGYE+SHLR+ +   +PFAFAVFSD QSA+  MHA
Sbjct: 61  VRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRS-SDGAKPFAFAVFSDLQSAVAVMHA 120

Query: 121 VNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHM 180
           +NGMVFDLEK S L++DLAK+N +SKR+RT+D   G +   ++  +  +T + G GS   
Sbjct: 121 LNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDD---GWESLKKLKSW-NTTTESGFGSFQT 180

Query: 181 SGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNP-----PCPTVFVANLGPSCT 240
            GMS+SAY+TIGY  AQS G      + +      T + P     PCPT+F+AN+GP+CT
Sbjct: 181 PGMSSSAYNTIGYSPAQSQG------IANVAGRAPTSRKPSKAADPCPTLFIANMGPNCT 240

Query: 241 EQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMR 300
           E ELIQ+FSRC GFLKLK+Q TYG PVAF DFQD +CSS A++ LQGTVLYSS  GE +R
Sbjct: 241 EAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTVLYSSLTGEVLR 290

Query: 301 LEYAKSRMGMRRK 302
           L+YA+SRMGMR+K
Sbjct: 301 LQYARSRMGMRKK 290

[Close]

BLAST of Sed0018726.1 vs. TAIR 10
Match: AT2G42240.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 283.1 bits (723), Expect = 2.6e-76
Identity = 167/313 (53.35%), Postives = 211/313 (67.41%), Query Frame = 0


Query: 1   MDEMANYY-----PAPPPAPASGLEAPTYSYYQAPPSSQH--YPPTFASYALPHAASFND 60
           MD++  YY     PA  P P  G+          P +S H  Y PT  S       + ++
Sbjct: 1   MDDLEAYYSHYNLPAMVPPPPPGVS-------PIPITSAHSVYLPTHVS-----IGARDE 60

Query: 61  VRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMHA 120
           VRTLF+AGLPEDVKPREIYNLFR+FPGYE+SHLR+ +   +PFAFAVFSD QSA+  MHA
Sbjct: 61  VRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRS-SDGAKPFAFAVFSDLQSAVAVMHA 120

Query: 121 VNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHM 180
           +NGMVFDLEK S L++DLAK+N +SKR+RT+D   G +   ++  +  +T + G GS   
Sbjct: 121 LNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDD---GWESLKKLKSW-NTTTESGFGSFQT 180

Query: 181 SGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNP-----PCPTVFVANLGPSCT 240
            GMS+SAY+TIGY  AQS G      + +      T + P     PCPT+F+AN+GP+CT
Sbjct: 181 PGMSSSAYNTIGYSPAQSQG------IANVAGRAPTSRKPSKAADPCPTLFIANMGPNCT 240

Query: 241 EQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMR 300
           E ELIQ+FSRC GFLKLK+Q TYG PVAF DFQD +CSS A++ LQGTVLYSS  GE +R
Sbjct: 241 EAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTVLYSSLTGEVLR 287

Query: 301 LEYAKSRMGMRRK 302
           L+   SRMGMR+K
Sbjct: 301 LQ---SRMGMRKK 287

[Close]

BLAST of Sed0018726.1 vs. TAIR 10
Match: AT2G42240.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 278.5 bits (711), Expect = 6.5e-75
Identity = 161/303 (53.14%), Postives = 204/303 (67.33%), Query Frame = 0


Query: 1   MDEMANYY-----PAPPPAPASGLEAPTYSYYQAPPSSQH--YPPTFASYALPHAASFND 60
           MD++  YY     PA  P P  G+          P +S H  Y PT  S       + ++
Sbjct: 1   MDDLEAYYSHYNLPAMVPPPPPGVS-------PIPITSAHSVYLPTHVS-----IGARDE 60

Query: 61  VRTLFIAGLPEDVKPREIYNLFRDFPGYESSHLRTPTQTTQPFAFAVFSDQQSAIGAMHA 120
           VRTLF+AGLPEDVKPREIYNLFR+FPGYE+SHLR+ +   +PFAFAVFSD QSA+  MHA
Sbjct: 61  VRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRS-SDGAKPFAFAVFSDLQSAVAVMHA 120

Query: 121 VNGMVFDLEKQSVLYVDLAKANSRSKRTRTEDERYGSDKKARVSRFPRSTPDPGLGSTHM 180
           +NGMVFDLEK S L++DLAK+N +SKR+RT+D   G +   ++  +  +T + G GS   
Sbjct: 121 LNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDD---GWESLKKLKSW-NTTTESGFGSFQT 180

Query: 181 SGMSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNP-----PCPTVFVANLGPSCT 240
            GMS+SAY+TIGY  AQS G      + +      T + P     PCPT+F+AN+GP+CT
Sbjct: 181 PGMSSSAYNTIGYSPAQSQG------IANVAGRAPTSRKPSKAADPCPTLFIANMGPNCT 240

Query: 241 EQELIQIFSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMR 292
           E ELIQ+FSRC GFLKLK+Q TYG PVAF DFQD +CSS A++ LQGTVLYSS  GE +R
Sbjct: 241 EAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTVLYSSLTGEVLR 280

[Close]

BLAST of Sed0018726.1 vs. TAIR 10
Match: AT3G13700.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 149.4 bits (376), Expect = 4.5e-36
Identity = 105/283 (37.10%), Postives = 146/283 (51.59%), Query Frame = 0


Query: 27  YQAPPSSQHYPPTFASYALPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHL 86
           YQ      H PP     A    A    + TLF++GLP DVK REI+NLFR   G+ES  L
Sbjct: 13  YQLHSHPHHLPPQLPLLADEPGA----INTLFVSGLPNDVKAREIHNLFRRRHGFESCQL 72

Query: 87  RTPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLYVDLAKANSRSK------- 146
           +   +  Q  AFA F+  + A+ AM+ +NG+ FD +  S L+++LA++NSR K       
Sbjct: 73  KYTGRGDQVVAFATFTSHRFALAAMNELNGVKFDPQTGSNLHIELARSNSRRKERPGSGP 132

Query: 147 -----RTRTEDERYGSDKKARVSRFPRSTPDPG-LGSTHMSGMSNSAYDTIGYPSAQSHG 206
                    E  +   D+       P    +PG   S   +  + S  D+     A S  
Sbjct: 133 YVVIDNRNKEISKSQDDQSDEGDSDPDEVQEPGNSDSPKENDTTKSEADSEPDSKAPSAN 192

Query: 207 SFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQIFSRCPGFLKLKMQSTYGA 266
               K       A        C T+F+ANLGP+CTE EL Q+ SR PGF  LK+++  G 
Sbjct: 193 GHLEKASEGGSGARA------CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGM 252

Query: 267 PVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMRLEYAKSRM 297
           PVAFADF++   ++ A+NHLQG +L SS  G GM +EYA+S+M
Sbjct: 253 PVAFADFEEIEQATDAMNHLQGNLLSSSDRG-GMHIEYARSKM 284

[Close]

BLAST of Sed0018726.1 vs. TAIR 10
Match: AT3G13700.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 129.8 bits (325), Expect = 3.7e-30
Identity = 101/295 (34.24%), Postives = 139/295 (47.12%), Query Frame = 0


Query: 27  YQAPPSSQHYPPTFASYALPHAASFNDVRTLFIAGLPEDVKPREIYNLFRDFPGYESSHL 86
           YQ      H PP     A    A    + TLF++GLP DVK REI+NLFR   G+ES  L
Sbjct: 13  YQLHSHPHHLPPQLPLLADEPGA----INTLFVSGLPNDVKAREIHNLFRRRHGFESCQL 72

Query: 87  R------------------TPTQTTQPFAFAVFSDQQSAIGAMHAVNGMVFDLEKQSVLY 146
           +                   P       AFA F+  + A+ AM+ +NG+ FD +  S L+
Sbjct: 73  KYTGRGDQVCKNLQFLFFFIPIFRKAVVAFATFTSHRFALAAMNELNGVKFDPQTGSNLH 132

Query: 147 VDLAKANSRSK------------RTRTEDERYGSDKKARVSRFPRSTPDPG-LGSTHMSG 206
           ++LA++NSR K                E  +   D+       P    +PG   S   + 
Sbjct: 133 IELARSNSRRKERPGSGPYVVIDNRNKEISKSQDDQSDEGDSDPDEVQEPGNSDSPKEND 192

Query: 207 MSNSAYDTIGYPSAQSHGSFDYKTVNDTVAANVTPQNPPCPTVFVANLGPSCTEQELIQI 266
            + S  D+     A S      K       A        C T+F+ANLGP+CTE EL Q+
Sbjct: 193 TTKSEADSEPDSKAPSANGHLEKASEGGSGARA------CSTLFIANLGPNCTEDELKQL 252

Query: 267 FSRCPGFLKLKMQSTYGAPVAFADFQDTACSSGAVNHLQGTVLYSSPPGEGMRLE 291
            SR PGF  LK+++  G PVAFADF++   ++ A+NHLQG +L SS  G GM +E
Sbjct: 253 LSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLSSSDRG-GMHIE 296

The following BLAST results are available for this feature:

BLAST of Sed0018726.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023543723.1	1.1e-145	84.06	protein WHI4 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_038881694.1	1.5e-145	85.17	protein WHI4 isoform X2 [Benincasa hispida]	[more]
XP_022949757.1	1.9e-145	84.06	protein WHI4 isoform X2 [Cucurbita moschata]	[more]
XP_022133116.1	1.2e-144	84.33	protein WHI4 [Momordica charantia]	[more]
XP_022977593.1	1.6e-144	83.75	protein WHI4 isoform X1 [Cucurbita maxima]	[more]

BLAST of Sed0018726.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VC52	1.6e-14	43.33	RNA-binding protein with multiple splicing 2 OS=Mus musculus OX=10090 GN=Rbpms2 ...	[more]
Q6ZRY4	2.1e-14	43.33	RNA-binding protein with multiple splicing 2 OS=Homo sapiens OX=9606 GN=RBPMS2 P...	[more]
Q6DH13	2.8e-14	43.33	RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a...	[more]
Q9W6I1	3.6e-14	43.33	RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 ...	[more]
Q9YGP5	4.7e-14	43.33	RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2...	[more]

BLAST of Sed0018726.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GD02	9.2e-146	84.06	protein WHI4 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453048 PE=4 SV=1	[more]
A0A6J1BU41	6.0e-145	84.33	protein WHI4 OS=Momordica charantia OX=3673 GN=LOC111005791 PE=4 SV=1	[more]
A0A6J1IQG5	7.8e-145	83.75	protein WHI4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477875 PE=4 SV=1	[more]
A0A6J1GCW9	2.3e-144	83.80	U1 small nuclear ribonucleoprotein A isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1IMS7	1.9e-143	83.49	U1 small nuclear ribonucleoprotein A isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Sed0018726.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42240.1	1.9e-79	53.99	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.3	2.6e-76	53.35	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.2	6.5e-75	53.14	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13700.2	4.5e-36	37.10	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13700.1	3.7e-30	34.24	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 56..128 e-value: 8.2E-8 score: 42.0 coord: 217..286 e-value: 0.0012 score: 28.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 218..280 e-value: 2.4E-7 score: 30.5 coord: 57..120 e-value: 3.9E-10 score: 39.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 216..294 score: 11.008294
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 55..134 score: 11.946341
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 52..144 e-value: 2.5E-20 score: 74.4
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 207..302 e-value: 5.8E-17 score: 63.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..159
None	No IPR available	PANTHER	PTHR10501:SF43	RNA-BINDING PROTEIN-RELATED	coord: 6..289
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 6..289
None	No IPR available	CDD	cd12420	RRM_RBPMS_like	coord: 55..130 e-value: 1.32262E-29 score: 105.815
None	No IPR available	CDD	cd12245	RRM_scw1_like	coord: 214..293 e-value: 7.89406E-39 score: 129.632
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 53..280

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0018726	Sed0018726	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0018726.1-three_prime_utr	Sed0018726.1-three_prime_utr-LG10:4494107..4494278	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0018726.1-exon	Sed0018726.1-exon-LG10:4494107..4494321	exon
Sed0018726.1-exon	Sed0018726.1-exon-LG10:4494410..4494495	exon
Sed0018726.1-exon	Sed0018726.1-exon-LG10:4494741..4494810	exon
Sed0018726.1-exon	Sed0018726.1-exon-LG10:4494899..4494987	exon
Sed0018726.1-exon	Sed0018726.1-exon-LG10:4495735..4495786	exon
Sed0018726.1-exon	Sed0018726.1-exon-LG10:4496021..4496093	exon
Sed0018726.1-exon	Sed0018726.1-exon-LG10:4496378..4496446	exon
Sed0018726.1-exon	Sed0018726.1-exon-LG10:4496547..4496631	exon
Sed0018726.1-exon	Sed0018726.1-exon-LG10:4497981..4498043	exon
Sed0018726.1-exon	Sed0018726.1-exon-LG10:4499052..4499350	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0018726.1-cds	Sed0018726.1-cds-LG10:4494279..4494321	CDS
Sed0018726.1-cds	Sed0018726.1-cds-LG10:4494410..4494495	CDS
Sed0018726.1-cds	Sed0018726.1-cds-LG10:4494741..4494810	CDS
Sed0018726.1-cds	Sed0018726.1-cds-LG10:4494899..4494987	CDS
Sed0018726.1-cds	Sed0018726.1-cds-LG10:4495735..4495786	CDS
Sed0018726.1-cds	Sed0018726.1-cds-LG10:4496021..4496093	CDS
Sed0018726.1-cds	Sed0018726.1-cds-LG10:4496378..4496446	CDS
Sed0018726.1-cds	Sed0018726.1-cds-LG10:4496547..4496631	CDS
Sed0018726.1-cds	Sed0018726.1-cds-LG10:4497981..4498043	CDS
Sed0018726.1-cds	Sed0018726.1-cds-LG10:4499052..4499333	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0018726.1-five_prime_utr	Sed0018726.1-five_prime_utr-LG10:4499334..4499350	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0018726.1	Sed0018726.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003729	mRNA binding