Sed0018394.1 (mRNA) Chayote v1

Overview


Name	Sed0018394.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Poly(A)-specific ribonuclease
Location	LG11: 363337 .. 364230 (-)
Sequence length	894
RNA-Seq Expression	Sed0018394.1
Synteny	Sed0018394.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAAGAACAAGAAGCAGAATCGACTGCGTTCGAGGGCACGGCAGCCTTGGATTCGAGAAGTTTGGTGTTCGAATTACTACTCCGAGATCTCCCTCCTCGGCGATTTTCTTCAACATTACAAAATCCTGTCCATCGACACCGAGTTTCCGGGATGTATTAGGAGCACCCCGCGAGGCGCCATCGAAGAGCAACTCTACGAAGATCTTCGATTCAACGTGATGCAAACCAAGCTGATCCAACTCGGCGTAACAGCCTCGAACGAATTCGGGGAAGTCGGCGGCTCGTGGGAGTTCAACTTCTCGGATTTCGACTCGGAATTAGACGCGCACAACCCTTGGTCGATCTCGTTCCTCAAACAGAACGGCATTGATTTCGAGAAGCTGAAGAAAGATGGTGTCCCATTGAGAAGATTCACTATGGATTTTGTTCATGTGTTGAGAAAGAATCACATCTGTAAGTGGATTACATTCCACGGGTTATACGACATCGGGTATCTGCTGAAGGCGATGGGGTTCGTGTGGTTGCCCGAATCATTGGAGGAGTTTGCAGGGATGGTTGCGAATGAAGTAGGGGTTGTGAGGGATTTGAAGTACATGATTCGATTCTGCGACGGGTTGGAAGATAGGGTCGGGCTCGAGAGATTGAGCGAATTGGTTGGCGAGAAGAGGTTCGGGATGAAGCACCATGCTGGCTCGGATAGCATGTTGACGGCTCGTGTGCATACGAAGATGATTACAAGTTATGGTTTGGATTCGAGTATTTGTGATGGCTATTTGTTTGGAATCTCCAACAGACTTCACAGCCAGTACCACCAGTTTGTTACACCTTATGGAACCGTTATGTTTGGTCAATTCCCAATTTCATTACCAATTGCAATTAGTGCTCAGTGA

mRNA sequence

ATGACGAAGAACAAGAAGCAGAATCGACTGCGTTCGAGGGCACGGCAGCCTTGGATTCGAGAAGTTTGGTGTTCGAATTACTACTCCGAGATCTCCCTCCTCGGCGATTTTCTTCAACATTACAAAATCCTGTCCATCGACACCGAGTTTCCGGGATGTATTAGGAGCACCCCGCGAGGCGCCATCGAAGAGCAACTCTACGAAGATCTTCGATTCAACGTGATGCAAACCAAGCTGATCCAACTCGGCGTAACAGCCTCGAACGAATTCGGGGAAGTCGGCGGCTCGTGGGAGTTCAACTTCTCGGATTTCGACTCGGAATTAGACGCGCACAACCCTTGGTCGATCTCGTTCCTCAAACAGAACGGCATTGATTTCGAGAAGCTGAAGAAAGATGGTGTCCCATTGAGAAGATTCACTATGGATTTTGTTCATGTGTTGAGAAAGAATCACATCTGTAAGTGGATTACATTCCACGGGTTATACGACATCGGGTATCTGCTGAAGGCGATGGGGTTCGTGTGGTTGCCCGAATCATTGGAGGAGTTTGCAGGGATGGTTGCGAATGAAGTAGGGGTTGTGAGGGATTTGAAGTACATGATTCGATTCTGCGACGGGTTGGAAGATAGGGTCGGGCTCGAGAGATTGAGCGAATTGGTTGGCGAGAAGAGGTTCGGGATGAAGCACCATGCTGGCTCGGATAGCATGTTGACGGCTCGTGTGCATACGAAGATGATTACAAGTTATGGTTTGGATTCGAGTATTTGTGATGGCTATTTGTTTGGAATCTCCAACAGACTTCACAGCCAGTACCACCAGTTTGTTACACCTTATGGAACCGTTATGTTTGGTCAATTCCCAATTTCATTACCAATTGCAATTAGTGCTCAGTGA

Coding sequence (CDS)

ATGACGAAGAACAAGAAGCAGAATCGACTGCGTTCGAGGGCACGGCAGCCTTGGATTCGAGAAGTTTGGTGTTCGAATTACTACTCCGAGATCTCCCTCCTCGGCGATTTTCTTCAACATTACAAAATCCTGTCCATCGACACCGAGTTTCCGGGATGTATTAGGAGCACCCCGCGAGGCGCCATCGAAGAGCAACTCTACGAAGATCTTCGATTCAACGTGATGCAAACCAAGCTGATCCAACTCGGCGTAACAGCCTCGAACGAATTCGGGGAAGTCGGCGGCTCGTGGGAGTTCAACTTCTCGGATTTCGACTCGGAATTAGACGCGCACAACCCTTGGTCGATCTCGTTCCTCAAACAGAACGGCATTGATTTCGAGAAGCTGAAGAAAGATGGTGTCCCATTGAGAAGATTCACTATGGATTTTGTTCATGTGTTGAGAAAGAATCACATCTGTAAGTGGATTACATTCCACGGGTTATACGACATCGGGTATCTGCTGAAGGCGATGGGGTTCGTGTGGTTGCCCGAATCATTGGAGGAGTTTGCAGGGATGGTTGCGAATGAAGTAGGGGTTGTGAGGGATTTGAAGTACATGATTCGATTCTGCGACGGGTTGGAAGATAGGGTCGGGCTCGAGAGATTGAGCGAATTGGTTGGCGAGAAGAGGTTCGGGATGAAGCACCATGCTGGCTCGGATAGCATGTTGACGGCTCGTGTGCATACGAAGATGATTACAAGTTATGGTTTGGATTCGAGTATTTGTGATGGCTATTTGTTTGGAATCTCCAACAGACTTCACAGCCAGTACCACCAGTTTGTTACACCTTATGGAACCGTTATGTTTGGTCAATTCCCAATTTCATTACCAATTGCAATTAGTGCTCAGTGA

Protein sequence

MTKNKKQNRLRSRARQPWIREVWCSNYYSEISLLGDFLQHYKILSIDTEFPGCIRSTPRGAIEEQLYEDLRFNVMQTKLIQLGVTASNEFGEVGGSWEFNFSDFDSELDAHNPWSISFLKQNGIDFEKLKKDGVPLRRFTMDFVHVLRKNHICKWITFHGLYDIGYLLKAMGFVWLPESLEEFAGMVANEVGVVRDLKYMIRFCDGLEDRVGLERLSELVGEKRFGMKHHAGSDSMLTARVHTKMITSYGLDSSICDGYLFGISNRLHSQYHQFVTPYGTVMFGQFPISLPIAISAQ

Homology

[Close]

BLAST of Sed0018394.1 vs. NCBI nr
Match: KAG6604931.1 (putative CCR4-associated factor 1-like 8, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027010.1 putative CCR4-associated factor 1-like 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 355.9 bits (912), Expect = 3.3e-94
Identity = 182/288 (63.19%), Postives = 222/288 (77.08%), Query Frame = 0


Query: 6   KQNRLRSRARQPWIREVWCSNYYSEISLLGDFLQHYKILSIDTEFPGCIRSTPRGAIEEQ 65
           ++NR R R R P I+EVW SN+  EI  L   LQ   ILSIDTEFPGCIRSTP G+I+E+
Sbjct: 3   RRNRARPRRRTPSIQEVWASNFDHEILRLERCLQANHILSIDTEFPGCIRSTPWGSIDER 62

Query: 66  LYEDLRFNVMQTKLIQLGVTASNEFGEVGGSWEFNFSDFDSELDAHNPWSISFLKQNGID 125
           +YEDLRFNV QTKLIQLG+TAS+E G+V GSWEFNFSDFD ++D  NP SISFL+QNG+D
Sbjct: 63  VYEDLRFNVNQTKLIQLGLTASDESGQVVGSWEFNFSDFDHQIDTQNPSSISFLEQNGLD 122

Query: 126 FEKLKKDGVPLRRFTMDFVHVLRKNHICKWITFHGLYDIGYLLKAMGFV-WLPESLEEFA 185
           F KLKK G+PL  FT++F  ++R++ + KW+TFHGLYDIGYL+KAMG    LPES+EEFA
Sbjct: 123 FAKLKKQGIPLSLFTLNFSRIIRRSRVRKWVTFHGLYDIGYLVKAMGVAEELPESMEEFA 182

Query: 186 GMVANEVGVVRDLKYMIRFCDGLED-RVGLERLSELVGEKRFGMKHHAGSDSMLTARVHT 245
            MVA  VGVVRDLK + R+C+GLE  RVGLERL EL+GEKRFGMKHHAGSDS+LTA VH 
Sbjct: 183 EMVARGVGVVRDLKEVARWCEGLEQGRVGLERLGELLGEKRFGMKHHAGSDSLLTAFVHA 242

Query: 246 KMITSYGLDSSICDGYLFGISNRL-HSQYHQFVTPYGTVMFGQFPISL 291
           KM   + L+S   DG+L+G+ N+L H + +Q      T+MFGQ   SL
Sbjct: 243 KMARWFRLESGAYDGHLYGLQNKLEHMKVNQ------TIMFGQISCSL 284

[Close]

BLAST of Sed0018394.1 vs. NCBI nr
Match: XP_022947867.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata])

HSP 1 Score: 347.1 bits (889), Expect = 1.6e-91
Identity = 172/264 (65.15%), Postives = 210/264 (79.55%), Query Frame = 0


Query: 6   KQNRLRSRARQPWIREVWCSNYYSEISLLGDFLQHYKILSIDTEFPGCIRSTPRGAIEEQ 65
           ++NR R R R P I+EVW SN+  EI  L   LQ   ILSIDTEFPGCIRSTP G+I+E+
Sbjct: 3   RRNRERPRRRTPSIQEVWASNFDHEILRLERCLQANHILSIDTEFPGCIRSTPWGSIDER 62

Query: 66  LYEDLRFNVMQTKLIQLGVTASNEFGEVGGSWEFNFSDFDSELDAHNPWSISFLKQNGID 125
           +YEDLRFNV QTKLIQLG+TAS+E G+V GSWEFNFSDFD ++D  NP SI+FL+QNG+D
Sbjct: 63  VYEDLRFNVNQTKLIQLGLTASDESGQVAGSWEFNFSDFDHQIDTQNPSSIAFLEQNGLD 122

Query: 126 FEKLKKDGVPLRRFTMDFVHVLRKNHICKWITFHGLYDIGYLLKAMGFV-WLPESLEEFA 185
           F KLKK G+PL  FT++F  ++R++ + KW+TFHGLYDIGYL+KAMG    LPES+EEFA
Sbjct: 123 FAKLKKQGIPLSLFTLNFSRIIRRSRVRKWVTFHGLYDIGYLVKAMGVAEELPESMEEFA 182

Query: 186 GMVANEVGVVRDLKYMIRFCDGLED-RVGLERLSELVGEKRFGMKHHAGSDSMLTARVHT 245
            MVA  VGVVRDLK + R+C+GLE  RVGLERL EL+GEKRFGMKHHAGSDS+LTA VH 
Sbjct: 183 EMVARGVGVVRDLKEVARWCEGLEQGRVGLERLGELLGEKRFGMKHHAGSDSLLTAFVHA 242

Query: 246 KMITSYGLDSSICDGYLFGISNRL 268
           KM   + L+S   DG+L+G+ N+L
Sbjct: 243 KMARWFRLESEAYDGHLYGLRNKL 266

[Close]

BLAST of Sed0018394.1 vs. NCBI nr
Match: XP_038895744.1 (putative CCR4-associated factor 1 homolog 8 [Benincasa hispida])

HSP 1 Score: 343.2 bits (879), Expect = 2.2e-90
Identity = 162/289 (56.06%), Postives = 223/289 (77.16%), Query Frame = 0


Query: 12  SRARQPWIREVWCSNYYSEISLLGDFLQHYKILSIDTEFPGCIRSTPRGAIEEQLYEDLR 71
           +R R+  I +VW SN+ +EIS L + L+ + I+SIDTEFPG IR++P G+I+E LYED R
Sbjct: 4   NRIRKSLIHKVWASNFDAEISKLEECLEFHTIVSIDTEFPGFIRNSPWGSIDETLYEDFR 63

Query: 72  FNVMQTKLIQLGVTASNEFGEVGGSWEFNFSDFDSELDAHNPWSISFLKQNGIDFEKLKK 131
           FNV QTKLIQLG+TA ++ G++GGSWEFNFSDFD E+DA +P S SFL+QNG+DF KLKK
Sbjct: 64  FNVNQTKLIQLGLTACDDSGKIGGSWEFNFSDFDPEIDAQSPSSASFLEQNGLDFNKLKK 123

Query: 132 DGVPLRRFTMDFVHVLRKNHICKWITFHGLYDIGYLLKAMGFV-WLPESLEEFAGMVANE 191
            G+P+  FT  FVH++RK+++ +W+TFHGLYDIGYL+KAMG    LPE++EEFA +V   
Sbjct: 124 YGIPINLFTAKFVHIIRKHNVFRWVTFHGLYDIGYLIKAMGITEVLPETMEEFATVVVRR 183

Query: 192 VGVVRDLKYMIRFCDGLED-RVGLERLSELVGEKRFGMKHHAGSDSMLTARVHTKMITSY 251
           +G+VRDLK+M RFC+GLED ++GLERL +L+ +KR+G+KH+AGSDS+LTA  H +MI  +
Sbjct: 184 LGIVRDLKHMARFCEGLEDGKLGLERLGKLLDQKRYGLKHNAGSDSLLTASAHFEMIQRF 243

Query: 252 GLDSSICDGYLFGISNRLHS------QYHQFVTPYGTVMFGQFPISLPI 293
            +D+ ICDGYL+G SN+L S       +H+ +     + FGQ P ++P+
Sbjct: 244 DMDAEICDGYLYGFSNKLQSMDINMNMFHRKI-----ITFGQIPYAIPL 287

[Close]

BLAST of Sed0018394.1 vs. NCBI nr
Match: XP_031736916.1 (putative CCR4-associated factor 1 homolog 8 [Cucumis sativus] >KGN61926.1 hypothetical protein Csa_006644 [Cucumis sativus])

HSP 1 Score: 338.2 bits (866), Expect = 7.2e-89
Identity = 154/266 (57.89%), Postives = 212/266 (79.70%), Query Frame = 0


Query: 7   QNRLRSRARQPWIREVWCSNYYSEISLLGDFLQHYKILSIDTEFPGCIRSTPRGAIEEQL 66
           +N+ RS   +P IR+VW SN+ SEI+   + L+ + IL+IDTEFPG I  +PRG+I+++L
Sbjct: 4   RNQTRSTREKPLIRQVWASNFDSEIARFDECLRFHTILTIDTEFPGFIAQSPRGSIDDEL 63

Query: 67  YEDLRFNVMQTKLIQLGVTASNEFGEVGGSWEFNFSDFDSELDAHNPWSISFLKQNGIDF 126
           Y+D  FNV QTKLIQLG+TAS++ G++GGSWEFNFSDFD E DAH+P++I FL+ NG+D 
Sbjct: 64  YKDFCFNVNQTKLIQLGITASDDLGQIGGSWEFNFSDFDFEADAHSPYAIPFLEHNGLDL 123

Query: 127 EKLKKDGVPLRRFTMDFVHVLRKNHICKWITFHGLYDIGYLLKAMGFVW-LPESLEEFAG 186
           +K+KKDG+P+  FT  F+ +LRK  I +W+TFHGLYDIGYL+KAMG +  LP+S+EEFA 
Sbjct: 124 KKMKKDGIPIASFTKKFLPILRKRDIFRWVTFHGLYDIGYLIKAMGLITVLPKSMEEFAT 183

Query: 187 MVANEVGVVRDLKYMIRFCDGLED--RVGLERLSELVGEKRFGMKHHAGSDSMLTARVHT 246
           +V NEVG+VRDLK+M +FC+GL+D  R+GLERL +L+  KRFGMKH+AGSDS+LTA  H 
Sbjct: 184 VVVNEVGIVRDLKHMAKFCEGLDDHGRLGLERLGKLLNLKRFGMKHNAGSDSLLTASAHL 243

Query: 247 KMITSYGLDSSICDGYLFGISNRLHS 270
           +M+  +G++S +C+G+L+G S  L S
Sbjct: 244 EMVERFGMNSKVCNGFLYGFSETLES 269

[Close]

BLAST of Sed0018394.1 vs. NCBI nr
Match: XP_023533171.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 335.9 bits (860), Expect = 3.6e-88
Identity = 170/260 (65.38%), Postives = 204/260 (78.46%), Query Frame = 0


Query: 6   KQNRLRSRARQPWIREVWCSNYYSEISLLGDFLQHYKILSIDTEFPGCIRSTPRGAIEEQ 65
           ++NR R R R P I+EVW SN+  EI  L   LQ   ILSIDTEFPGCIRSTP G+I+E+
Sbjct: 3   RRNRARPRRRTPSIQEVWASNFDHEILRLERCLQANHILSIDTEFPGCIRSTPWGSIDER 62

Query: 66  LYEDLRFNVMQTKLIQLGVTASNEFGEVGGSWEFNFSDFDSELDAHNPWSISFLKQNGID 125
           +YEDLRFNV QTKLIQLG+TAS+E G+V GSWEFNFSDFD ++D  NP SISFL+QNG+D
Sbjct: 63  VYEDLRFNVNQTKLIQLGLTASDESGQVAGSWEFNFSDFDHQIDTQNPSSISFLEQNGLD 122

Query: 126 FEKLKKDGVPLRRFTMDFVHVLRKNHICKWITFHGLYDIGYLLKAMGFV-WLPESLEEFA 185
           F KLKK G+PL  FT+ F  ++R++ + KW+TFHGLYDIGYL+KAMG    LPES+EEFA
Sbjct: 123 FAKLKKQGIPLSLFTLKFSRIIRRSRVRKWVTFHGLYDIGYLVKAMGVAEELPESMEEFA 182

Query: 186 GMVANEVGVVRDLKYMIRFCDGLED-RVGLERLSELVGEKRFGMKHHAGSDSMLTARVHT 245
            MVA  VGVVRDLK + R+C+GLE  +VGLERL EL+GEKRFGMKHHAGSDS+LTA VH 
Sbjct: 183 EMVARGVGVVRDLKEVARWCEGLEQGKVGLERLGELLGEKRFGMKHHAGSDSLLTAFVHA 242

Query: 246 KMITSYGLDS----SICDGY 260
           KM    GL+S    +IC G+
Sbjct: 243 KMARWLGLESGCMTAICMGF 262

[Close]

BLAST of Sed0018394.1 vs. ExPASy Swiss-Prot
Match: O64773 (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 5.8e-49
Identity = 101/229 (44.10%), Postives = 145/229 (63.32%), Query Frame = 0


Query: 21  EVWCSNYYSEISLLGDFLQHYKILSIDTEFPGCIRSTPRGAIEEQLYEDLRFNVMQTKLI 80
           EVW  N  +E++ + D L+H   ++IDTEFPGC++ TP  A +E  Y D++FNV  T LI
Sbjct: 4   EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLI 63

Query: 81  QLGVTASNEFGE-VGGSWEFNFSDFDSELDAHNPWSISFLKQNGIDFEKLKKDGVPLRRF 140
           QLG+T    FG+ +  +WE N SDF+      N  SI+FLK NG+D +K++++G+ +  F
Sbjct: 64  QLGLTL---FGKGITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEF 123

Query: 141 TMDFVHVLRKNH-ICKWITFHGLYDIGYLLKAMGFVWLPESLEEFAGMVANEVG-VVRDL 200
            M+F  +L + H   +W+TF G YD  YLLK +    LPE+ +EF   V   +G  V D+
Sbjct: 124 FMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQLLGRFVYDV 183

Query: 201 KYMIRFCDGLEDRVGLERLSELVGEKRFGMKHHAGSDSMLTARVHTKMI 247
           K M   C GL  R GL+R+++++  +R G  HHAGSDS LTARV TK+I
Sbjct: 184 KKMAGLCSGLSSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKLI 229

[Close]

BLAST of Sed0018394.1 vs. ExPASy Swiss-Prot
Match: Q9LXM4 (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana OX=3702 GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 5.4e-47
Identity = 97/222 (43.69%), Postives = 140/222 (63.06%), Query Frame = 0


Query: 31  ISLLGDFLQHYKILSIDTEFPGCIRSTPRGAIEEQLYEDLRFNVMQTKLIQLGVTASNEF 90
           +SL+ D L+ Y+ ++IDTEFP  +R T + A +E+ Y D+ F+V + KLIQLG+T  +  
Sbjct: 1   MSLIEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDIN 60

Query: 91  GEVGGSWEFNFSDFDSELDAHNPWSISFLKQNGIDFEKLKKDGVPLRRFTMDFVHVLRK- 150
           G +GG+WE NFSDF  + DA N  SI FL++NG+D  K++++G+ +  F  +   +L+K 
Sbjct: 61  GRIGGTWEINFSDFGVD-DARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKT 120

Query: 151 NHICKWITFHGLYDIGYLLKAMGFVWLPESLEEFAGMVANEVGVVRDLKYMIRFCDGLED 210
                W+TFHG YDI YLLK      LP + E F+  VA  +G V DLK M   C+GL  
Sbjct: 121 RRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGLSS 180

Query: 211 RVGLERLSELVGEKRFGMKHHAGSDSMLTARVHTKMITSYGL 252
           R+GLE L+   G  R G  HHAGS++ LTA V  K+++ + L
Sbjct: 181 RLGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKVLSPFPL 221

[Close]

BLAST of Sed0018394.1 vs. ExPASy Swiss-Prot
Match: Q9C6M9 (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana OX=3702 GN=CAF1-4 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.3e-45
Identity = 99/228 (43.42%), Postives = 139/228 (60.96%), Query Frame = 0


Query: 21  EVWCSNYYSEISLLGDFLQHYKILSIDTEFPGCIRSTPRGAIEEQLYEDLRFNVMQTKLI 80
           EVW  N   E+  + D L+H+  ++IDTEFPGC++ TP  A EE  Y D++FNV  T LI
Sbjct: 3   EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 62

Query: 81  QLGVTASNEFGEVGGSWEFNFSDFDSELDAHNPWSISFLKQNGIDFEKLKKDGVPLRRFT 140
           QLG T  +  G +  +WE N SDF+      N  SI+FLK NG++ +K+ ++G+ +  F 
Sbjct: 63  QLGFTLFDRRG-ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFF 122

Query: 141 MDFVHVLR-KNHICKWITFHGLYDIGYLLKAM-GFVWLPESLEEFAGMVANEVG-VVRDL 200
            DF  +L+ K+    W+ F G YD  YL+K + G   LPE+ EEF   V   +G  V D+
Sbjct: 123 RDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDV 182

Query: 201 KYMIRFCDGLEDRVGLERLSELVGEKRFGMKHHAGSDSMLTARVHTKM 246
           K +   C GL  R GL+R+++++  KR G  HHAGSDS LTARV TK+
Sbjct: 183 KKIAESCSGLSSRFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 229

[Close]

BLAST of Sed0018394.1 vs. ExPASy Swiss-Prot
Match: Q9SHJ0 (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 8.7e-45
Identity = 97/250 (38.80%), Postives = 141/250 (56.40%), Query Frame = 0


Query: 16  QPWIREVWCSNYYSEISLLGDFLQHYKILSIDTEFPGCIRSTPRGAIEEQLYEDLRFNVM 75
           QP  R VW SN   E++ + + L+ + +++ DTE+PG I  T   +  ++ Y  ++ NV 
Sbjct: 6   QPLARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVE 65

Query: 76  QTKLIQLGVTASNEFGEVGGSWEFNFSDFDSELDAHNPWSISFLKQNGIDFEKLKKDGVP 135
            TKLIQ G T  N  GE+GG WE NFS+F    D  N  SI FL+++G+D +K++ +GV 
Sbjct: 66  NTKLIQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVD 125

Query: 136 L--RRFTMDFVHVLRKNHICKWITFHGLYDIGYLLKAMGFVWLPESLEEFAGMVANEVGV 195
           +    F    + V R     +++TF G YD  Y L  +    LPE+  EFA  V    G 
Sbjct: 126 MFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFGQ 185

Query: 196 VRDLKYMIRFCDGLEDRVGLERLSELVGEKRFGMKHHAGSDSMLTARVHTKMITSYGLDS 255
           V D K M  FC+GL + +GL +L++L+   R G  HHAGSDS++TA V  K+   Y  DS
Sbjct: 186 VYDTKVMAGFCEGLGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVYE-DS 245

Query: 256 SICDGYLFGI 264
               G ++GI
Sbjct: 246 RFARGLIYGI 254

[Close]

BLAST of Sed0018394.1 vs. ExPASy Swiss-Prot
Match: Q9SFX6 (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana OX=3702 GN=CAF1-3 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 8.7e-45
Identity = 99/228 (43.42%), Postives = 138/228 (60.53%), Query Frame = 0


Query: 21  EVWCSNYYSEISLLGDFLQHYKILSIDTEFPGCIRSTPRGAIEEQLYEDLRFNVMQTKLI 80
           EVW  N   E++ + D L+H   ++IDTEFPGC++ TP  A EE  Y D++FNV  T LI
Sbjct: 8   EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 67

Query: 81  QLGVTASNEFGEVGGSWEFNFSDFDSELDAHNPWSISFLKQNGIDFEKLKKDGVPLRRFT 140
           QLG T  +  G    +WE N SDFD      N  SI+FLK NG++ +K++++G+ +  F 
Sbjct: 68  QLGFTLFDRRG-FAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFF 127

Query: 141 MDFVHVL-RKNHICKWITFHGLYDIGYLLKAM-GFVWLPESLEEFAGMVANEVG-VVRDL 200
            DF  +L  K+    W+ F G YD  YL+K + G   LPE+ EEF   V   +G  V D+
Sbjct: 128 RDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDV 187

Query: 201 KYMIRFCDGLEDRVGLERLSELVGEKRFGMKHHAGSDSMLTARVHTKM 246
           K +   C GL  + GL+R+++++  KR G  HHAGSDS LTARV TK+
Sbjct: 188 KKIAESCSGLSSQFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 234

[Close]

BLAST of Sed0018394.1 vs. ExPASy TrEMBL
Match: A0A6J1G7L2 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451625 PE=3 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 7.5e-92
Identity = 172/264 (65.15%), Postives = 210/264 (79.55%), Query Frame = 0


Query: 6   KQNRLRSRARQPWIREVWCSNYYSEISLLGDFLQHYKILSIDTEFPGCIRSTPRGAIEEQ 65
           ++NR R R R P I+EVW SN+  EI  L   LQ   ILSIDTEFPGCIRSTP G+I+E+
Sbjct: 3   RRNRERPRRRTPSIQEVWASNFDHEILRLERCLQANHILSIDTEFPGCIRSTPWGSIDER 62

Query: 66  LYEDLRFNVMQTKLIQLGVTASNEFGEVGGSWEFNFSDFDSELDAHNPWSISFLKQNGID 125
           +YEDLRFNV QTKLIQLG+TAS+E G+V GSWEFNFSDFD ++D  NP SI+FL+QNG+D
Sbjct: 63  VYEDLRFNVNQTKLIQLGLTASDESGQVAGSWEFNFSDFDHQIDTQNPSSIAFLEQNGLD 122

Query: 126 FEKLKKDGVPLRRFTMDFVHVLRKNHICKWITFHGLYDIGYLLKAMGFV-WLPESLEEFA 185
           F KLKK G+PL  FT++F  ++R++ + KW+TFHGLYDIGYL+KAMG    LPES+EEFA
Sbjct: 123 FAKLKKQGIPLSLFTLNFSRIIRRSRVRKWVTFHGLYDIGYLVKAMGVAEELPESMEEFA 182

Query: 186 GMVANEVGVVRDLKYMIRFCDGLED-RVGLERLSELVGEKRFGMKHHAGSDSMLTARVHT 245
            MVA  VGVVRDLK + R+C+GLE  RVGLERL EL+GEKRFGMKHHAGSDS+LTA VH 
Sbjct: 183 EMVARGVGVVRDLKEVARWCEGLEQGRVGLERLGELLGEKRFGMKHHAGSDSLLTAFVHA 242

Query: 246 KMITSYGLDSSICDGYLFGISNRL 268
           KM   + L+S   DG+L+G+ N+L
Sbjct: 243 KMARWFRLESEAYDGHLYGLRNKL 266

[Close]

BLAST of Sed0018394.1 vs. ExPASy TrEMBL
Match: A0A0A0LPP0 (Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_2G270190 PE=3 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 3.5e-89
Identity = 154/266 (57.89%), Postives = 212/266 (79.70%), Query Frame = 0


Query: 7   QNRLRSRARQPWIREVWCSNYYSEISLLGDFLQHYKILSIDTEFPGCIRSTPRGAIEEQL 66
           +N+ RS   +P IR+VW SN+ SEI+   + L+ + IL+IDTEFPG I  +PRG+I+++L
Sbjct: 4   RNQTRSTREKPLIRQVWASNFDSEIARFDECLRFHTILTIDTEFPGFIAQSPRGSIDDEL 63

Query: 67  YEDLRFNVMQTKLIQLGVTASNEFGEVGGSWEFNFSDFDSELDAHNPWSISFLKQNGIDF 126
           Y+D  FNV QTKLIQLG+TAS++ G++GGSWEFNFSDFD E DAH+P++I FL+ NG+D 
Sbjct: 64  YKDFCFNVNQTKLIQLGITASDDLGQIGGSWEFNFSDFDFEADAHSPYAIPFLEHNGLDL 123

Query: 127 EKLKKDGVPLRRFTMDFVHVLRKNHICKWITFHGLYDIGYLLKAMGFVW-LPESLEEFAG 186
           +K+KKDG+P+  FT  F+ +LRK  I +W+TFHGLYDIGYL+KAMG +  LP+S+EEFA 
Sbjct: 124 KKMKKDGIPIASFTKKFLPILRKRDIFRWVTFHGLYDIGYLIKAMGLITVLPKSMEEFAT 183

Query: 187 MVANEVGVVRDLKYMIRFCDGLED--RVGLERLSELVGEKRFGMKHHAGSDSMLTARVHT 246
           +V NEVG+VRDLK+M +FC+GL+D  R+GLERL +L+  KRFGMKH+AGSDS+LTA  H 
Sbjct: 184 VVVNEVGIVRDLKHMAKFCEGLDDHGRLGLERLGKLLNLKRFGMKHNAGSDSLLTASAHL 243

Query: 247 KMITSYGLDSSICDGYLFGISNRLHS 270
           +M+  +G++S +C+G+L+G S  L S
Sbjct: 244 EMVERFGMNSKVCNGFLYGFSETLES 269

[Close]

BLAST of Sed0018394.1 vs. ExPASy TrEMBL
Match: A0A5A7TRG1 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001200 PE=3 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 2.3e-88
Identity = 155/284 (54.58%), Postives = 222/284 (78.17%), Query Frame = 0


Query: 7   QNRLRS-RARQPWIREVWCSNYYSEISLLGDFLQHYKILSIDTEFPGCIRSTPRGAIEEQ 66
           +N+ RS R+++P+IR+VW SN+ SEI+   + L+ + IL+IDTEFPG I  +PR +I+E+
Sbjct: 4   RNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEE 63

Query: 67  LYEDLRFNVMQTKLIQLGVTASNEFGEVGGSWEFNFSDFDSELDAHNPWSISFLKQNGID 126
           +Y++ RFNV Q KLIQLG+TASN+FG++GGSWEFNFSDFD ++D+H+P +I FL++NG+D
Sbjct: 64  IYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLEKNGLD 123

Query: 127 FEKLKKDGVPLRRFTMDFVHVLRKNHICKWITFHGLYDIGYLLKAMGFVW-LPESLEEFA 186
           F+KLKK G+P+  FT  F+ +++K  I +W+TFHGLYDIGYL+KAMG +  LP+S+EEFA
Sbjct: 124 FKKLKKYGIPIASFTKKFLPIIQKRDIFRWVTFHGLYDIGYLIKAMGLITVLPKSMEEFA 183

Query: 187 GMVANEVGVVRDLKYMIRFCDGLED-RVGLERLSELVGEKRFGMKHHAGSDSMLTARVHT 246
            +V NEVG+VRDLK+M RFC+GLED R+GLERL +++ +KRFGMKH+AGSDS+LTA  H 
Sbjct: 184 TLVVNEVGIVRDLKHMARFCEGLEDGRLGLERLGKILNKKRFGMKHNAGSDSLLTASAHF 243

Query: 247 KMITSYGLDSSICDGYLFGISNRLHSQYHQFVTPYGTVMFGQFP 288
           +M+  +G+   +C+G+L+G S  L S     +  +  +  GQ P
Sbjct: 244 EMVKRFGMTYEVCNGFLYGFSESLESM-KMIIYHHNILRLGQIP 286

[Close]

BLAST of Sed0018394.1 vs. ExPASy TrEMBL
Match: A0A6J1CXP9 (Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111015407 PE=3 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 9.5e-87
Identity = 160/284 (56.34%), Postives = 210/284 (73.94%), Query Frame = 0


Query: 9   RLRSRARQPWIREVWCSNYYSEISLLGDFLQHYKILSIDTEFPGCIRSTPRGAIEEQLYE 68
           R  SR     IREVW  N+  E++ L D L  Y IL+IDTEFPG IRSTP GAIEE+LY+
Sbjct: 6   RGHSRRGNAQIREVWSRNFDLELANLNDCLNLYPILTIDTEFPGFIRSTPWGAIEEKLYD 65

Query: 69  DLRFNVMQTKLIQLGVTASNEFGEVGGSWEFNFSDFDSELDAHNPWSISFLKQNGIDFEK 128
           D RFNV +TKLIQLG+TAS+E G +G +WEFNFSDFD ++D HN  S+SFLKQNG+DF+K
Sbjct: 66  DFRFNVNRTKLIQLGLTASDEIGNIGSTWEFNFSDFDPQIDTHNASSVSFLKQNGLDFDK 125

Query: 129 LKKDGVPLRRFTMDFVHVLRKNHICKWITFHGLYDIGYLLKAMGFVW-LPESLEEFAGMV 188
           LK+ G+P+  FT     + RK+ I +W+TFHGLYDIGYLLKAMG    +PES+EEFA +V
Sbjct: 126 LKEFGIPINEFTSKAFFLFRKHRIVRWVTFHGLYDIGYLLKAMGVAGEIPESMEEFAELV 185

Query: 189 ANEVGVVRDLKYMIRFCDGLED-RVGLERLSELVGEKRFGMKHHAGSDSMLTARVHTKMI 248
              +G V DLK+M +FC+GLED ++GLE+L++L+ +KRFG KHHAGSDS+LTA ++ KM 
Sbjct: 186 ERALGNVSDLKHMAQFCEGLEDGKLGLEKLAQLMNQKRFGNKHHAGSDSLLTASLYAKMK 245

Query: 249 TSYGLDSSICDGYLFGISNRLHSQYHQFVTPYGTVMFGQFPISL 291
             + L S +CDG+L+G+  +LH++    +  Y  +MFGQ P  L
Sbjct: 246 NQFELGSEVCDGFLYGLRIKLHAK----IKLYQNLMFGQIPYGL 285

[Close]

BLAST of Sed0018394.1 vs. ExPASy TrEMBL
Match: A0A6J1I4S7 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111469631 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.2e-84
Identity = 153/256 (59.77%), Postives = 196/256 (76.56%), Query Frame = 0


Query: 13  RARQPWIREVWCSNYYSEISLLGDFLQHYKILSIDTEFPGCIRSTPRGAIEEQLYEDLRF 72
           R   P I EVW  N   EI  L   L  Y ++SIDTEFPGCI+ TP G I+E+LY D RF
Sbjct: 9   RGDNPLITEVWAYNLDDEILRLDHCLLLYPVMSIDTEFPGCIKRTPWGTIDEELYADFRF 68

Query: 73  NVMQTKLIQLGVTASNEFGEVGGSWEFNFSDFDSELDAHNPWSISFLKQNGIDFEKLKKD 132
           NV QTK+IQLGVT S+E G++GG+WEFNFSDFD E+DAHNP SI FLKQNG+DF KLKKD
Sbjct: 69  NVNQTKVIQLGVTVSDESGDIGGTWEFNFSDFDPEIDAHNPASICFLKQNGLDFGKLKKD 128

Query: 133 GVPLRRFTMDFVHVLRKNHICKWITFHGLYDIGYLLKAMGFV-WLPESLEEFAGMVANEV 192
           G+ +R+F + F++ +RK+ I +WITFHGLYDIGYL+ A+G V  LPE+L EF  +VA  V
Sbjct: 129 GIKVRKFAIRFLYTMRKHAIHQWITFHGLYDIGYLILALGVVKSLPETLGEFEWIVARRV 188

Query: 193 GVVRDLKYMIRFCDGLE-DRVGLERLSELVGEKRFGMKHHAGSDSMLTARVHTKMITSYG 252
           G VRDLK+M RFC+GLE   +GLE+L +L+ +KRFG+KHHAGSDS++TA +H KM+  Y 
Sbjct: 189 GTVRDLKHMARFCEGLEGGNLGLEKLGQLLDQKRFGLKHHAGSDSLMTALLHEKMLQLYD 248

Query: 253 LDSSICDGYLFGISNR 267
            ++ ICDG+L+G+S +
Sbjct: 249 FNAEICDGFLYGLSKK 264

[Close]

BLAST of Sed0018394.1 vs. TAIR 10
Match: AT1G61470.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 196.1 bits (497), Expect = 4.1e-50
Identity = 101/229 (44.10%), Postives = 145/229 (63.32%), Query Frame = 0


Query: 21  EVWCSNYYSEISLLGDFLQHYKILSIDTEFPGCIRSTPRGAIEEQLYEDLRFNVMQTKLI 80
           EVW  N  +E++ + D L+H   ++IDTEFPGC++ TP  A +E  Y D++FNV  T LI
Sbjct: 4   EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLI 63

Query: 81  QLGVTASNEFGE-VGGSWEFNFSDFDSELDAHNPWSISFLKQNGIDFEKLKKDGVPLRRF 140
           QLG+T    FG+ +  +WE N SDF+      N  SI+FLK NG+D +K++++G+ +  F
Sbjct: 64  QLGLTL---FGKGITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEF 123

Query: 141 TMDFVHVLRKNH-ICKWITFHGLYDIGYLLKAMGFVWLPESLEEFAGMVANEVG-VVRDL 200
            M+F  +L + H   +W+TF G YD  YLLK +    LPE+ +EF   V   +G  V D+
Sbjct: 124 FMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQLLGRFVYDV 183

Query: 201 KYMIRFCDGLEDRVGLERLSELVGEKRFGMKHHAGSDSMLTARVHTKMI 247
           K M   C GL  R GL+R+++++  +R G  HHAGSDS LTARV TK+I
Sbjct: 184 KKMAGLCSGLSSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKLI 229

[Close]

BLAST of Sed0018394.1 vs. TAIR 10
Match: AT3G44240.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 189.5 bits (480), Expect = 3.9e-48
Identity = 97/222 (43.69%), Postives = 140/222 (63.06%), Query Frame = 0


Query: 31  ISLLGDFLQHYKILSIDTEFPGCIRSTPRGAIEEQLYEDLRFNVMQTKLIQLGVTASNEF 90
           +SL+ D L+ Y+ ++IDTEFP  +R T + A +E+ Y D+ F+V + KLIQLG+T  +  
Sbjct: 1   MSLIEDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDIN 60

Query: 91  GEVGGSWEFNFSDFDSELDAHNPWSISFLKQNGIDFEKLKKDGVPLRRFTMDFVHVLRK- 150
           G +GG+WE NFSDF  + DA N  SI FL++NG+D  K++++G+ +  F  +   +L+K 
Sbjct: 61  GRIGGTWEINFSDFGVD-DARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKKT 120

Query: 151 NHICKWITFHGLYDIGYLLKAMGFVWLPESLEEFAGMVANEVGVVRDLKYMIRFCDGLED 210
                W+TFHG YDI YLLK      LP + E F+  VA  +G V DLK M   C+GL  
Sbjct: 121 RRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMAGRCEGLSS 180

Query: 211 RVGLERLSELVGEKRFGMKHHAGSDSMLTARVHTKMITSYGL 252
           R+GLE L+   G  R G  HHAGS++ LTA V  K+++ + L
Sbjct: 181 RLGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKVLSPFPL 221

[Close]

BLAST of Sed0018394.1 vs. TAIR 10
Match: AT1G27890.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 184.1 bits (466), Expect = 1.6e-46
Identity = 99/228 (43.42%), Postives = 139/228 (60.96%), Query Frame = 0


Query: 21  EVWCSNYYSEISLLGDFLQHYKILSIDTEFPGCIRSTPRGAIEEQLYEDLRFNVMQTKLI 80
           EVW  N   E+  + D L+H+  ++IDTEFPGC++ TP  A EE  Y D++FNV  T LI
Sbjct: 3   EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 62

Query: 81  QLGVTASNEFGEVGGSWEFNFSDFDSELDAHNPWSISFLKQNGIDFEKLKKDGVPLRRFT 140
           QLG T  +  G +  +WE N SDF+      N  SI+FLK NG++ +K+ ++G+ +  F 
Sbjct: 63  QLGFTLFDRRG-ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLNLDKIGEEGIGIEEFF 122

Query: 141 MDFVHVLR-KNHICKWITFHGLYDIGYLLKAM-GFVWLPESLEEFAGMVANEVG-VVRDL 200
            DF  +L+ K+    W+ F G YD  YL+K + G   LPE+ EEF   V   +G  V D+
Sbjct: 123 RDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVEQLLGKFVFDV 182

Query: 201 KYMIRFCDGLEDRVGLERLSELVGEKRFGMKHHAGSDSMLTARVHTKM 246
           K +   C GL  R GL+R+++++  KR G  HHAGSDS LTARV TK+
Sbjct: 183 KKIAESCSGLSSRFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 229

[Close]

BLAST of Sed0018394.1 vs. TAIR 10
Match: AT1G27820.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 182.2 bits (461), Expect = 6.2e-46
Identity = 99/228 (43.42%), Postives = 138/228 (60.53%), Query Frame = 0


Query: 21  EVWCSNYYSEISLLGDFLQHYKILSIDTEFPGCIRSTPRGAIEEQLYEDLRFNVMQTKLI 80
           EVW  N   E++ + D L+H   ++IDTEFPGC++ TP  A EE  Y D++FNV  T LI
Sbjct: 8   EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 67

Query: 81  QLGVTASNEFGEVGGSWEFNFSDFDSELDAHNPWSISFLKQNGIDFEKLKKDGVPLRRFT 140
           QLG T  +  G    +WE N SDFD      N  SI+FLK NG++ +K++++G+ +  F 
Sbjct: 68  QLGFTLFDRRG-FAKTWEINLSDFDEHKCFKNDKSIAFLKSNGLNLDKIREEGIGIDEFF 127

Query: 141 MDFVHVL-RKNHICKWITFHGLYDIGYLLKAM-GFVWLPESLEEFAGMVANEVG-VVRDL 200
            DF  +L  K+    W+ F G YD  YL+K + G   LPE+ EEF   V   +G  V D+
Sbjct: 128 RDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHETVQQLLGKFVFDV 187

Query: 201 KYMIRFCDGLEDRVGLERLSELVGEKRFGMKHHAGSDSMLTARVHTKM 246
           K +   C GL  + GL+R+++++  KR G  HHAGSDS LTARV TK+
Sbjct: 188 KKIAESCSGLSSQFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 234

[Close]

BLAST of Sed0018394.1 vs. TAIR 10
Match: AT1G06450.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 182.2 bits (461), Expect = 6.2e-46
Identity = 97/250 (38.80%), Postives = 141/250 (56.40%), Query Frame = 0


Query: 16  QPWIREVWCSNYYSEISLLGDFLQHYKILSIDTEFPGCIRSTPRGAIEEQLYEDLRFNVM 75
           QP  R VW SN   E++ + + L+ + +++ DTE+PG I  T   +  ++ Y  ++ NV 
Sbjct: 6   QPLARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVE 65

Query: 76  QTKLIQLGVTASNEFGEVGGSWEFNFSDFDSELDAHNPWSISFLKQNGIDFEKLKKDGVP 135
            TKLIQ G T  N  GE+GG WE NFS+F    D  N  SI FL+++G+D +K++ +GV 
Sbjct: 66  NTKLIQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVD 125

Query: 136 L--RRFTMDFVHVLRKNHICKWITFHGLYDIGYLLKAMGFVWLPESLEEFAGMVANEVGV 195
           +    F    + V R     +++TF G YD  Y L  +    LPE+  EFA  V    G 
Sbjct: 126 MFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFGQ 185

Query: 196 VRDLKYMIRFCDGLEDRVGLERLSELVGEKRFGMKHHAGSDSMLTARVHTKMITSYGLDS 255
           V D K M  FC+GL + +GL +L++L+   R G  HHAGSDS++TA V  K+   Y  DS
Sbjct: 186 VYDTKVMAGFCEGLGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVYE-DS 245

Query: 256 SICDGYLFGI 264
               G ++GI
Sbjct: 246 RFARGLIYGI 254

The following BLAST results are available for this feature:

BLAST of Sed0018394.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604931.1	3.3e-94	63.19	putative CCR4-associated factor 1-like 8, partial [Cucurbita argyrosperma subsp....	[more]
XP_022947867.1	1.6e-91	65.15	putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata]	[more]
XP_038895744.1	2.2e-90	56.06	putative CCR4-associated factor 1 homolog 8 [Benincasa hispida]	[more]
XP_031736916.1	7.2e-89	57.89	putative CCR4-associated factor 1 homolog 8 [Cucumis sativus] >KGN61926.1 hypoth...	[more]
XP_023533171.1	3.6e-88	65.38	putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0018394.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64773	5.8e-49	44.10	Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LXM4	5.4e-47	43.69	Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9C6M9	2.3e-45	43.42	Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SHJ0	8.7e-45	38.80	Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SFX6	8.7e-45	43.42	Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]

BLAST of Sed0018394.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7L2	7.5e-92	65.15	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451625 PE=3...	[more]
A0A0A0LPP0	3.5e-89	57.89	Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_2G270190 PE=3 SV...	[more]
A0A5A7TRG1	2.3e-88	54.58	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A6J1CXP9	9.5e-87	56.34	Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111015407 PE=...	[more]
A0A6J1I4S7	1.2e-84	59.77	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111469631 PE=3 S...	[more]

BLAST of Sed0018394.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61470.1	4.1e-50	44.10	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G44240.1	3.9e-48	43.69	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G27890.1	1.6e-46	43.42	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G27820.1	6.2e-46	43.42	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G06450.1	6.2e-46	38.80	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 6..266 e-value: 4.6E-64 score: 218.1
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 22..135 e-value: 4.2E-8 score: 32.8
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 17..273
None	No IPR available	PANTHER	PTHR10797:SF57	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 3-RELATED	coord: 17..273
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 13..250

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0018394	Sed0018394	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0018394.1-cds	Sed0018394.1-cds-LG11:363337..364230	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0018394.1-exon	Sed0018394.1-exon-LG11:363337..364230	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0018394.1	Sed0018394.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006402	mRNA catabolic process
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030014	CCR4-NOT complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity