Sed0018019.1 (mRNA) Chayote v1

Overview
NameSed0018019.1
TypemRNA
OrganismSechium edule (Chayote v1)
Descriptionsuppressor of mec-8 and unc-52 protein homolog 1
LocationLG03: 126584 .. 127067 (+)
Sequence length363
RNA-Seq ExpressionSed0018019.1
SyntenySed0018019.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCCAAGGGGCACAATGGTTGAAAACTTGGGTTTCAAAGGTATGCTATCTTCAAGGTTCCAGGTTCGAAACTCTGTTATGACATTACCCTTTCGATGTCTCTCGGTGCTTGACCTAGGGACAGGCGTGGTTACCCTTATTTAAAAAAAAAAAAAAATCACTTGGTGATGTAATGATTGTTTCTGTTGTTTAAATACCTTTCTCCCTTCTTGGTATATTTTCTAAAAAGGAATTTCCTTTTGCTTGGGCTTGTAATTTGATTATTGTTTTGAATGGCTACATATTATAATTTATTGCATGCCTGGATGTTAGATTGTTTGAACTCGAAAGAAGCTTGAAAAGGAAAACAATTATTTATTTATTTTTAACTTGTTTCTGGTAGGTTCATGAGAAGGACGTGATAGGTGTGAGCCATCATCCTCATAGAAATCTCGTTGCCACTTATAGTGAAGACAGCACTATGAAACTATGGAAGCCTTGA

mRNA sequence

ATGCTCCCAAGGGGCACAATGGTTGAAAACTTGGGTTTCAAAGGTATGCTATCTTCAAGGTTCCAGGTTCGAAACTCTGTTATGACATTACCCTTTCGATGTCTCTCGGGACAGGCGTGGTTACCCTTATTTAAAAAAAAAAAAAAATCACTTGGTGATGTAATGATTGTTTCTGTTGAATTTCCTTTTGCTTGGGCTTGTAATTTGATTATTATTAAGCTTGAAAAGGAAAACAATTATTTATTTATTTTTAACTTGTTTCTGGTTCATGAGAAGGACGTGATAGGTGTGAGCCATCATCCTCATAGAAATCTCGTTGCCACTTATAGTGAAGACAGCACTATGAAACTATGGAAGCCTTGA

Coding sequence (CDS)

ATGCTCCCAAGGGGCACAATGGTTGAAAACTTGGGTTTCAAAGGTATGCTATCTTCAAGGTTCCAGGTTCGAAACTCTGTTATGACATTACCCTTTCGATGTCTCTCGGGACAGGCGTGGTTACCCTTATTTAAAAAAAAAAAAAAATCACTTGGTGATGTAATGATTGTTTCTGTTGAATTTCCTTTTGCTTGGGCTTGTAATTTGATTATTATTAAGCTTGAAAAGGAAAACAATTATTTATTTATTTTTAACTTGTTTCTGGTTCATGAGAAGGACGTGATAGGTGTGAGCCATCATCCTCATAGAAATCTCGTTGCCACTTATAGTGAAGACAGCACTATGAAACTATGGAAGCCTTGA

Protein sequence

MLPRGTMVENLGFKGMLSSRFQVRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLFIFNLFLVHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP
Homology
BLAST of Sed0018019.1 vs. NCBI nr
Match: KAF8037877.1 (hypothetical protein BT93_B0650 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-11
Identity = 49/104 (47.12%), Postives = 57/104 (54.81%), Query Frame = 0

Query: 23  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF 82
           V N   ++    L GQ    L   K++  GD +  SV     W    I    E  N Y F
Sbjct: 369 VCNKTSSIYIMTLQGQVVKSLSSGKREG-GDFVAASVSPKGEW----IYCVGEDRNLYCF 428

Query: 83  IF------NLFLVHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP 121
            +      +L  VHEKDVIGV+HHPHRNLVATYSEDSTMKLWKP
Sbjct: 429 SYQSGKLEHLMKVHEKDVIGVTHHPHRNLVATYSEDSTMKLWKP 467

BLAST of Sed0018019.1 vs. NCBI nr
Match: XP_038886288.1 (suppressor of mec-8 and unc-52 protein homolog 1 [Benincasa hispida])

HSP 1 Score: 77.8 bits (190), Expect = 7.1e-11
Identity = 49/104 (47.12%), Postives = 56/104 (53.85%), Query Frame = 0

Query: 23  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF 82
           V N   ++    L GQ  +  F   K+  GD +   V     W    I    E  N Y F
Sbjct: 415 VCNKTSSIYIMTLQGQV-VKSFSSGKREGGDFVAACVSPKGEW----IYCIGEDRNIYCF 474

Query: 83  ------IFNLFLVHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP 121
                 + +L  VHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP
Sbjct: 475 SHQSGKLEHLMKVHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP 513

BLAST of Sed0018019.1 vs. NCBI nr
Match: XP_002281533.1 (PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 isoform X1 [Vitis vinifera] >XP_034673200.1 suppressor of mec-8 and unc-52 protein homolog 1 [Vitis riparia] >CBI14981.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 77.4 bits (189), Expect = 9.3e-11
Identity = 48/104 (46.15%), Postives = 56/104 (53.85%), Query Frame = 0

Query: 23  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF 82
           V N   ++    L GQ  +  F   K+  GD +   V     W    I    E  N Y F
Sbjct: 416 VCNRTSSIYLMTLQGQV-VKSFSSGKREGGDFVAACVSPKGEW----IYCVGEDRNIYCF 475

Query: 83  IF------NLFLVHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP 121
            +      +L  VHEKDVIGV+HHPHRNLVATYSEDSTMKLWKP
Sbjct: 476 SYQSGKLEHLMKVHEKDVIGVTHHPHRNLVATYSEDSTMKLWKP 514

BLAST of Sed0018019.1 vs. NCBI nr
Match: XP_022152482.1 (suppressor of mec-8 and unc-52 protein homolog 1 isoform X1 [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 9.3e-11
Identity = 48/104 (46.15%), Postives = 56/104 (53.85%), Query Frame = 0

Query: 23  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF 82
           V N   ++    L GQ  +  F   K+  GD +   +     W    I    E  N Y F
Sbjct: 415 VCNKTSSIYVMTLQGQV-VKSFSSGKREGGDFVAACISPKGEW----IYCIGEDRNMYCF 474

Query: 83  ------IFNLFLVHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP 121
                 + +L  VHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP
Sbjct: 475 SVQSGKLEHLMKVHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP 513

BLAST of Sed0018019.1 vs. NCBI nr
Match: XP_019082149.1 (PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 isoform X2 [Vitis vinifera])

HSP 1 Score: 77.4 bits (189), Expect = 9.3e-11
Identity = 48/104 (46.15%), Postives = 56/104 (53.85%), Query Frame = 0

Query: 23  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF 82
           V N   ++    L GQ  +  F   K+  GD +   V     W    I    E  N Y F
Sbjct: 317 VCNRTSSIYLMTLQGQV-VKSFSSGKREGGDFVAACVSPKGEW----IYCVGEDRNIYCF 376

Query: 83  IF------NLFLVHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP 121
            +      +L  VHEKDVIGV+HHPHRNLVATYSEDSTMKLWKP
Sbjct: 377 SYQSGKLEHLMKVHEKDVIGVTHHPHRNLVATYSEDSTMKLWKP 415

BLAST of Sed0018019.1 vs. ExPASy Swiss-Prot
Match: Q8W117 (Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SMU1 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.9e-12
Identity = 43/106 (40.57%), Postives = 54/106 (50.94%), Query Frame = 0

Query: 23  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF 82
           V N   ++    L GQ  +  F    +  GD +   V     W      I    E+  L+
Sbjct: 413 VCNKTSSIYIMTLQGQV-VKSFSSGNREGGDFVAACVSTKGDW------IYCIGEDKKLY 472

Query: 83  IFN--------LFLVHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP 121
            FN          +VHEKDVIG++HHPHRNL+ATYSED TMKLWKP
Sbjct: 473 CFNYQSGGLEHFMMVHEKDVIGITHHPHRNLLATYSEDCTMKLWKP 511

BLAST of Sed0018019.1 vs. ExPASy Swiss-Prot
Match: Q2TBS9 (WD40 repeat-containing protein SMU1 OS=Bos taurus OX=9913 GN=SMU1 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.3e-10
Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 89  VHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP 121
           VHEKDVIG++HHPH+NL+ATYSED  +KLWKP
Sbjct: 482 VHEKDVIGIAHHPHQNLIATYSEDGLLKLWKP 513

BLAST of Sed0018019.1 vs. ExPASy Swiss-Prot
Match: Q5ZME8 (WD40 repeat-containing protein SMU1 OS=Gallus gallus OX=9031 GN=SMU1 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.3e-10
Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 89  VHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP 121
           VHEKDVIG++HHPH+NL+ATYSED  +KLWKP
Sbjct: 482 VHEKDVIGIAHHPHQNLIATYSEDGLLKLWKP 513

BLAST of Sed0018019.1 vs. ExPASy Swiss-Prot
Match: Q76B40 (WD40 repeat-containing protein SMU1 OS=Cricetulus griseus OX=10029 GN=SMU1 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.3e-10
Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 89  VHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP 121
           VHEKDVIG++HHPH+NL+ATYSED  +KLWKP
Sbjct: 482 VHEKDVIGIAHHPHQNLIATYSEDGLLKLWKP 513

BLAST of Sed0018019.1 vs. ExPASy Swiss-Prot
Match: Q2TAY7 (WD40 repeat-containing protein SMU1 OS=Homo sapiens OX=9606 GN=SMU1 PE=1 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 6.3e-10
Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 89  VHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP 121
           VHEKDVIG++HHPH+NL+ATYSED  +KLWKP
Sbjct: 482 VHEKDVIGIAHHPHQNLIATYSEDGLLKLWKP 513

BLAST of Sed0018019.1 vs. ExPASy TrEMBL
Match: D7SHM1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_17s0000g08930 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.5e-11
Identity = 48/104 (46.15%), Postives = 56/104 (53.85%), Query Frame = 0

Query: 23  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF 82
           V N   ++    L GQ  +  F   K+  GD +   V     W    I    E  N Y F
Sbjct: 416 VCNRTSSIYLMTLQGQV-VKSFSSGKREGGDFVAACVSPKGEW----IYCVGEDRNIYCF 475

Query: 83  IF------NLFLVHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP 121
            +      +L  VHEKDVIGV+HHPHRNLVATYSEDSTMKLWKP
Sbjct: 476 SYQSGKLEHLMKVHEKDVIGVTHHPHRNLVATYSEDSTMKLWKP 514

BLAST of Sed0018019.1 vs. ExPASy TrEMBL
Match: A0A6J1DGD4 (suppressor of mec-8 and unc-52 protein homolog 1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020200 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.5e-11
Identity = 48/104 (46.15%), Postives = 56/104 (53.85%), Query Frame = 0

Query: 23  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF 82
           V N   ++    L GQ  +  F   K+  GD +   +     W    I    E  N Y F
Sbjct: 415 VCNKTSSIYVMTLQGQV-VKSFSSGKREGGDFVAACISPKGEW----IYCIGEDRNMYCF 474

Query: 83  ------IFNLFLVHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP 121
                 + +L  VHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP
Sbjct: 475 SVQSGKLEHLMKVHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP 513

BLAST of Sed0018019.1 vs. ExPASy TrEMBL
Match: A0A6J1JRS0 (suppressor of mec-8 and unc-52 protein homolog 1-like OS=Cucurbita maxima OX=3661 GN=LOC111489200 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.9e-11
Identity = 48/104 (46.15%), Postives = 56/104 (53.85%), Query Frame = 0

Query: 23  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF 82
           V N   ++    L GQ  +  F   K+  GD +   V     W    I    E  N Y F
Sbjct: 415 VCNKTSSIYIMTLQGQV-VKSFSSGKREGGDFVAACVSPKGEW----IYCIGEDRNMYCF 474

Query: 83  ------IFNLFLVHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP 121
                 + +L  VHEKDVIGVSHHPHRNLVATYSEDSTMKLW+P
Sbjct: 475 SHQSGKLEHLMKVHEKDVIGVSHHPHRNLVATYSEDSTMKLWRP 513

BLAST of Sed0018019.1 vs. ExPASy TrEMBL
Match: A0A6J1FGH2 (suppressor of mec-8 and unc-52 protein homolog 1-like OS=Cucurbita moschata OX=3662 GN=LOC111445274 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.9e-11
Identity = 48/104 (46.15%), Postives = 56/104 (53.85%), Query Frame = 0

Query: 23  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF 82
           V N   ++    L GQ  +  F   K+  GD +   V     W    I    E  N Y F
Sbjct: 415 VCNKTSSIYIMTLQGQV-VKSFSSGKREGGDFVAACVSPKGEW----IYCIGEDRNMYCF 474

Query: 83  ------IFNLFLVHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP 121
                 + +L  VHEKDVIGVSHHPHRNLVATYSEDSTMKLW+P
Sbjct: 475 SHQSGKLEHLMKVHEKDVIGVSHHPHRNLVATYSEDSTMKLWRP 513

BLAST of Sed0018019.1 vs. ExPASy TrEMBL
Match: A0A1S3B3I2 (suppressor of mec-8 and unc-52 protein homolog 1 OS=Cucumis melo OX=3656 GN=LOC103485374 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.9e-11
Identity = 48/104 (46.15%), Postives = 56/104 (53.85%), Query Frame = 0

Query: 23  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF 82
           V N   ++    L GQ  +  F   K+  GD +   +     W    I    E  N Y F
Sbjct: 415 VCNKTSSIYIMTLQGQV-VKSFSSGKREGGDFVAACLSPKGEW----IYCIGEDRNMYCF 474

Query: 83  ------IFNLFLVHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP 121
                 + +L  VHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP
Sbjct: 475 SHLSGKLEHLMKVHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP 513

BLAST of Sed0018019.1 vs. TAIR 10
Match: AT1G73720.1 (transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-13
Identity = 43/106 (40.57%), Postives = 54/106 (50.94%), Query Frame = 0

Query: 23  VRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLF 82
           V N   ++    L GQ  +  F    +  GD +   V     W      I    E+  L+
Sbjct: 413 VCNKTSSIYIMTLQGQV-VKSFSSGNREGGDFVAACVSTKGDW------IYCIGEDKKLY 472

Query: 83  IFN--------LFLVHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP 121
            FN          +VHEKDVIG++HHPHRNL+ATYSED TMKLWKP
Sbjct: 473 CFNYQSGGLEHFMMVHEKDVIGITHHPHRNLLATYSEDCTMKLWKP 511

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF8037877.13.2e-1147.12hypothetical protein BT93_B0650 [Corymbia citriodora subsp. variegata][more]
XP_038886288.17.1e-1147.12suppressor of mec-8 and unc-52 protein homolog 1 [Benincasa hispida][more]
XP_002281533.19.3e-1146.15PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 isoform X1 [Vitis vi... [more]
XP_022152482.19.3e-1146.15suppressor of mec-8 and unc-52 protein homolog 1 isoform X1 [Momordica charantia... [more]
XP_019082149.19.3e-1146.15PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 isoform X2 [Vitis vi... [more]
Match NameE-valueIdentityDescription
Q8W1173.9e-1240.57Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana OX=3702... [more]
Q2TBS96.3e-1078.13WD40 repeat-containing protein SMU1 OS=Bos taurus OX=9913 GN=SMU1 PE=2 SV=1[more]
Q5ZME86.3e-1078.13WD40 repeat-containing protein SMU1 OS=Gallus gallus OX=9031 GN=SMU1 PE=2 SV=1[more]
Q76B406.3e-1078.13WD40 repeat-containing protein SMU1 OS=Cricetulus griseus OX=10029 GN=SMU1 PE=1 ... [more]
Q2TAY76.3e-1078.13WD40 repeat-containing protein SMU1 OS=Homo sapiens OX=9606 GN=SMU1 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
D7SHM14.5e-1146.15Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_17s0000g08930 PE=4 SV=... [more]
A0A6J1DGD44.5e-1146.15suppressor of mec-8 and unc-52 protein homolog 1 isoform X1 OS=Momordica charant... [more]
A0A6J1JRS05.9e-1146.15suppressor of mec-8 and unc-52 protein homolog 1-like OS=Cucurbita maxima OX=366... [more]
A0A6J1FGH25.9e-1146.15suppressor of mec-8 and unc-52 protein homolog 1-like OS=Cucurbita moschata OX=3... [more]
A0A1S3B3I25.9e-1146.15suppressor of mec-8 and unc-52 protein homolog 1 OS=Cucumis melo OX=3656 GN=LOC1... [more]
Match NameE-valueIdentityDescription
AT1G73720.12.8e-1340.57transducin family protein / WD-40 repeat family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 55..120
e-value: 1.0E-5
score: 26.8
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 87..120
score: 10.653776
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 87..120
score: 11.143396

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Sed0018019Sed0018019gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0018019.1-exonSed0018019.1-exon-LG03:126584..126691exon
Sed0018019.1-exonSed0018019.1-exon-LG03:126705..126773exon
Sed0018019.1-exonSed0018019.1-exon-LG03:126816..126851exon
Sed0018019.1-exonSed0018019.1-exon-LG03:126899..126901exon
Sed0018019.1-exonSed0018019.1-exon-LG03:126917..126964exon
Sed0018019.1-exonSed0018019.1-exon-LG03:126969..127067exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0018019.1-cdsSed0018019.1-cds-LG03:126584..126691CDS
Sed0018019.1-cdsSed0018019.1-cds-LG03:126705..126773CDS
Sed0018019.1-cdsSed0018019.1-cds-LG03:126816..126851CDS
Sed0018019.1-cdsSed0018019.1-cds-LG03:126899..126901CDS
Sed0018019.1-cdsSed0018019.1-cds-LG03:126917..126964CDS
Sed0018019.1-cdsSed0018019.1-cds-LG03:126969..127067CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Sed0018019.1Sed0018019.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding