Sed0017653.1 (mRNA) Chayote v1

Overview


Name	Sed0017653.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	TF-B3 domain-containing protein
Location	LG08: 6244578 .. 6245132 (+)
Sequence length	555
RNA-Seq Expression	Sed0017653.1
Synteny	Sed0017653.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAGGAGTCCACCACTTTCCACTATGGGTAGCAGTAACTCCAATAACTTAAACGAAGATGTCATTGAAGCAGCTCACACTCTTTATGTCATATGGATGAACCATGTGAACAATAAGGAGCAGGACAATAATGAACAACGACCACTCTTGCCATTGGCGGCGGTTGGCGATGCTCCAGAGGTGAGTCCGTGGATGCGAGAGTTCGCGGATATAATCGGAGTGCACAGCCCATCATTCGTGAAAAAATTAACCATAACAGACATGTCAGTGAATCATGGGCGAGTTACAGTGTCTAAGGAATTTGTGGAGTTAAATTTGGTTCCATTGTTCAATGCGGATGAGAATTTAAATGAAGGAATTGACGTTATGGTTTTTGATGCTCAAAGGAGGGCATACAACATGACGTTCAAGCGTTGGTCTAACAAGCTCTACGTGCTCACAAAAGGCTGGAATAGGTTTGTCCAGACAAATAATTTGGAGGCTAATGAGTCTGTGACTATGGGGATGTTCCGACATGCCAATACTGGGAGGCTTTGCTTTGCCATTACTCAGTGA

mRNA sequence

GAGAGGAGTCCACCACTTTCCACTATGGGTAGCAGTAACTCCAATAACTTAAACGAAGATGTCATTGAAGCAGCTCACACTCTTTATGTCATATGGATGAACCATGTGAACAATAAGGAGCAGGACAATAATGAACAACGACCACTCTTGCCATTGGCGGCGGTTGGCGATGCTCCAGAGGTGAGTCCGTGGATGCGAGAGTTCGCGGATATAATCGGAGTGCACAGCCCATCATTCGTGAAAAAATTAACCATAACAGACATGTCAGTGAATCATGGGCGAGTTACAGTGTCTAAGGAATTTGTGGAGTTAAATTTGGTTCCATTGTTCAATGCGGATGAGAATTTAAATGAAGGAATTGACGTTATGGTTTTTGATGCTCAAAGGAGGGCATACAACATGACGTTCAAGCGTTGGTCTAACAAGCTCTACGTGCTCACAAAAGGCTGGAATAGGTTTGTCCAGACAAATAATTTGGAGGCTAATGAGTCTGTGACTATGGGGATGTTCCGACATGCCAATACTGGGAGGCTTTGCTTTGCCATTACTCAGTGA

Coding sequence (CDS)

GAGAGGAGTCCACCACTTTCCACTATGGGTAGCAGTAACTCCAATAACTTAAACGAAGATGTCATTGAAGCAGCTCACACTCTTTATGTCATATGGATGAACCATGTGAACAATAAGGAGCAGGACAATAATGAACAACGACCACTCTTGCCATTGGCGGCGGTTGGCGATGCTCCAGAGGTGAGTCCGTGGATGCGAGAGTTCGCGGATATAATCGGAGTGCACAGCCCATCATTCGTGAAAAAATTAACCATAACAGACATGTCAGTGAATCATGGGCGAGTTACAGTGTCTAAGGAATTTGTGGAGTTAAATTTGGTTCCATTGTTCAATGCGGATGAGAATTTAAATGAAGGAATTGACGTTATGGTTTTTGATGCTCAAAGGAGGGCATACAACATGACGTTCAAGCGTTGGTCTAACAAGCTCTACGTGCTCACAAAAGGCTGGAATAGGTTTGTCCAGACAAATAATTTGGAGGCTAATGAGTCTGTGACTATGGGGATGTTCCGACATGCCAATACTGGGAGGCTTTGCTTTGCCATTACTCAGTGA

Protein sequence

ERSPPLSTMGSSNSNNLNEDVIEAAHTLYVIWMNHVNNKEQDNNEQRPLLPLAAVGDAPEVSPWMREFADIIGVHSPSFVKKLTITDMSVNHGRVTVSKEFVELNLVPLFNADENLNEGIDVMVFDAQRRAYNMTFKRWSNKLYVLTKGWNRFVQTNNLEANESVTMGMFRHANTGRLCFAITQ

Homology

[Close]

BLAST of Sed0017653.1 vs. NCBI nr
Match: KAG7023605.1 (putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-28
Identity = 72/154 (46.75%), Postives = 100/154 (64.94%), Query Frame = 0


Query: 33  MNHVNNKEQDNNEQRPLLPLAAVGD--APEVSPWMREFADIIGVHSPSFVKKLTITDMSV 92
           M+  N     N ++   L +  V +  AP V P +    +IIG  SP + K+LT +D+S 
Sbjct: 1   MDDENEAPSINGDEDVALEVEEVAEVVAPVVIPALAVIMNIIGARSPPWEKRLTKSDVSE 60

Query: 93  NHGRVTVSKEFVELNLVPLFNADENLNEGIDVMVFDAQRRAYNMTFKRWSNKLYVLTKGW 152
             GR+ V KEFV  +L+P+FNADE+ +EGIDV V++ + R Y+M FK W++KLYVLTKGW
Sbjct: 61  GQGRLIVRKEFVTNHLLPMFNADEDPSEGIDVTVYNGEGRQYDMQFKLWASKLYVLTKGW 120

Query: 153 NRFVQTNNL-EANESVTMGMFRHANTGRLCFAIT 184
           N F +TNNL E    VT+ MFRH  T ++CFA+T
Sbjct: 121 NDFYKTNNLTEPGLYVTLWMFRHVETHKICFAVT 154

[Close]

BLAST of Sed0017653.1 vs. NCBI nr
Match: KAG6589940.1 (putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.2 bits (339), Expect = 5.8e-28
Identity = 71/154 (46.10%), Postives = 100/154 (64.94%), Query Frame = 0


Query: 33  MNHVNNKEQDNNEQRPLLPLAAVGD--APEVSPWMREFADIIGVHSPSFVKKLTITDMSV 92
           M+  N     N ++   L +  V +  AP V P +    +IIG  SP + K+LT +D+S 
Sbjct: 52  MDDENEAPSINGDEDVALEVEEVAEVVAPVVIPALAVIMNIIGARSPPWEKRLTKSDVSE 111

Query: 93  NHGRVTVSKEFVELNLVPLFNADENLNEGIDVMVFDAQRRAYNMTFKRWSNKLYVLTKGW 152
             GR+ V KEFV  +L+P+FNADE+ +EGIDV V++ + R Y+M FK W++KLYVLTKGW
Sbjct: 112 GQGRLIVRKEFVTNHLLPMFNADEDPSEGIDVTVYNGEGRQYDMQFKLWASKLYVLTKGW 171

Query: 153 NRFVQTNNL-EANESVTMGMFRHANTGRLCFAIT 184
           N F +TNNL +    VT+ MFRH  T ++CFA+T
Sbjct: 172 NDFYKTNNLTDPGLYVTLWMFRHVETHKICFAVT 205

[Close]

BLAST of Sed0017653.1 vs. NCBI nr
Match: KGN56101.1 (hypothetical protein Csa_010492 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 7.5e-28
Identity = 69/146 (47.26%), Postives = 93/146 (63.70%), Query Frame = 0


Query: 38  NKEQDNNEQRPLLPLAAVGDAPEVSPWMREFADIIGVHSPSFVKKLTITDMSVNHGRVTV 97
           N + DN     +     VG      P M    +IIG  SP FVK+LT TD++ N GR+ +
Sbjct: 75  NNDDDNGNNENVAAAVVVGRDQGRFPPMAVIQNIIGECSPPFVKQLTKTDVTDNQGRLAL 134

Query: 98  SKEFVELNLVPLFNADENLNEGIDVMVFDAQRRAYNMTFKRWSNKLYVLTKGWNRFVQTN 157
            KEFV LNL P+FN DE+L +GI V+V+D + R Y+M FK W++KLYVLTK W  F +TN
Sbjct: 135 HKEFVNLNLDPMFNDDEDLEDGISVIVYDIEGREYDMIFKLWASKLYVLTKSWKEFYKTN 194

Query: 158 NL-EANESVTMGMFRHANTGRLCFAI 183
           +L +  E +++ MFRH  T +LCFAI
Sbjct: 195 DLTQPGEFISVWMFRHVVTQKLCFAI 220

[Close]

BLAST of Sed0017653.1 vs. NCBI nr
Match: KAA0043114.1 (putative B3 domain-containing protein [Cucumis melo var. makuwa] >TYJ96217.1 putative B3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 2.0e-25
Identity = 66/142 (46.48%), Postives = 90/142 (63.38%), Query Frame = 0


Query: 42  DNNEQRPLLPLAAVGDAPEVSPWMREFADIIGVHSPSFVKKLTITDMSVNHGRVTVSKEF 101
           +NN    +  + A  D   + P M    +IIG  SP FVK+LT TD++ + GR+ + KEF
Sbjct: 78  NNNNNENVAAVVADRDLGRLPP-MAVIQNIIGECSPPFVKQLTKTDVTDSQGRLALHKEF 137

Query: 102 VELNLVPLFNADENLNEGIDVMVFDAQRRAYNMTFKRWSNKLYVLTKGWNRFVQTNNL-E 161
           V  NLVP+FN DE L  GI V V+D++ R Y+MTF+ W++KLYVLTK W +F   N L  
Sbjct: 138 VNRNLVPMFNGDEILTNGISVTVYDSEGREYDMTFRLWTSKLYVLTKSWKKFYHDNGLTR 197

Query: 162 ANESVTMGMFRHANTGRLCFAI 183
            +E +T+ MFRH    +LCFAI
Sbjct: 198 PDEFITLWMFRHVVNHKLCFAI 218

[Close]

BLAST of Sed0017653.1 vs. NCBI nr
Match: XP_031736688.1 (uncharacterized protein LOC116402065 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 3.5e-25
Identity = 70/179 (39.11%), Postives = 107/179 (59.78%), Query Frame = 0


Query: 5   PLSTMGSSNSNNLNEDVIEAAHTLYVIWMNHVNNKEQDNNEQRPLLPLAAVGDAPEVSPW 64
           P++ + +  S++ +  ++     + +     VN    +NN +   + +A   D   V P 
Sbjct: 39  PVTRLNNRFSSSTSISILNKQPPILIERAPIVNEALPNNNNENVAVAVAG-RDWGRVPP- 98

Query: 65  MREFADIIGVHSPSFVKKLTITDMSVNHGRVTVSKEFVELNLVPLFNADENLNEGIDVMV 124
           M    +IIG  SP FVK+L  TD++ + GR+ + KEFV  NL+P+FN  ENL  GI V V
Sbjct: 99  MAVIQNIIGECSPPFVKQLMKTDVTESQGRLALHKEFVTRNLIPMFNRGENLKNGISVTV 158

Query: 125 FDAQRRAYNMTFKRWSNKLYVLTKGWNRFVQTNNL-EANESVTMGMFRHANTGRLCFAI 183
           +D++ R Y+M FK W++KLYVLTK WN+F ++NNL    E +++ MFRH    +LCFAI
Sbjct: 159 YDSEGREYDMIFKFWTSKLYVLTKSWNKFYKSNNLTRPGEFISVWMFRHVVNRKLCFAI 215

[Close]

BLAST of Sed0017653.1 vs. ExPASy Swiss-Prot
Match: Q9ZR14 (Putative B3 domain-containing protein At4g03170 OS=Arabidopsis thaliana OX=3702 GN=At4g03170 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-11
Identity = 41/115 (35.65%), Postives = 63/115 (54.78%), Query Frame = 0


Query: 70  DIIGVHSPSFVKKLTITDMSVNHGRVTVSKEFVELNLVPLFNADENLNEGIDVMVFDAQR 129
           ++  + S    K+L  +D+  +   + +SKE V+  ++P     EN  +GIDV V+    
Sbjct: 127 EVTRLFSRPIKKQLMSSDVDKDQCMLMLSKEQVKEKMLPFLEDSENPVKGIDVSVYGPDG 186

Query: 130 RAYNMTFKRWS-NKLYVLTKGWNRFVQTNNLEAN-ESVTMGMFRHANTGRLCFAI 183
           +   M FK W+ +K  VLT GW +FV+   L    + VT+ MFRH  T +LCFAI
Sbjct: 187 KVQQMEFKMWNGDKTPVLTSGWKQFVEDYGLSMTCDFVTVWMFRHIKTRKLCFAI 241

[Close]

BLAST of Sed0017653.1 vs. ExPASy Swiss-Prot
Match: Q9LM90 (B3 domain-containing protein At1g20600 OS=Arabidopsis thaliana OX=3702 GN=At1g20600 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.4e-06
Identity = 30/90 (33.33%), Postives = 49/90 (54.44%), Query Frame = 0


Query: 81  KKLTITDMSVNHGRVTVSKEFVELNLVPLFNADENLNEGIDVMVFDAQRRAYNMTFKRWS 140
           K+L  +D+  +  R+ +SKE V+  ++P     E+  +G+DV V+        M FK W+
Sbjct: 127 KQLMSSDVDTDQSRLMLSKEQVKEKMLPFLEESEDPVKGVDVSVYGPDGEVQQMKFKMWN 186

Query: 141 -NKLYVLTKGWNRFVQTNN-LEANESVTMG 169
            +K  VLT GW +FV     L+ ++ VT G
Sbjct: 187 GDKTPVLTSGWMQFVADYGLLKTSDFVTDG 216

[Close]

BLAST of Sed0017653.1 vs. ExPASy Swiss-Prot
Match: P82280 (AP2/ERF and B3 domain-containing transcription repressor RAV2 OS=Arabidopsis thaliana OX=3702 GN=RAV2 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.2e-05
Identity = 34/127 (26.77%), Postives = 62/127 (48.82%), Query Frame = 0


Query: 41  QDNNEQRPLLPLAAVGDAPEVSPWMREFADIIGVHSPSFVKKLTITDMSVNHGRVTVSKE 100
           + NN+++  L + A G     S    +   ++      F K +T +D+     R+ + K+
Sbjct: 152 EQNNKRQLFLSVDANGKRNGSSTTQND--KVLKTREVLFEKAVTPSDVG-KLNRLVIPKQ 211

Query: 101 FVELNLVPLFNADENLNEGIDVMVFDAQRRAYNMTFKRW-SNKLYVLTKGWNRFVQTNNL 160
             E +  PL +    + +G+ +   D   + +   +  W S++ YVLTKGW+RFV+  NL
Sbjct: 212 HAEKHF-PLPSPSPAVTKGVLINFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNL 271

Query: 161 EANESVT 167
            A + VT
Sbjct: 272 RAGDVVT 274

[Close]

BLAST of Sed0017653.1 vs. ExPASy TrEMBL
Match: A0A0A0L7L0 (TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G073910 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.6e-28
Identity = 69/146 (47.26%), Postives = 93/146 (63.70%), Query Frame = 0


Query: 38  NKEQDNNEQRPLLPLAAVGDAPEVSPWMREFADIIGVHSPSFVKKLTITDMSVNHGRVTV 97
           N + DN     +     VG      P M    +IIG  SP FVK+LT TD++ N GR+ +
Sbjct: 75  NNDDDNGNNENVAAAVVVGRDQGRFPPMAVIQNIIGECSPPFVKQLTKTDVTDNQGRLAL 134

Query: 98  SKEFVELNLVPLFNADENLNEGIDVMVFDAQRRAYNMTFKRWSNKLYVLTKGWNRFVQTN 157
            KEFV LNL P+FN DE+L +GI V+V+D + R Y+M FK W++KLYVLTK W  F +TN
Sbjct: 135 HKEFVNLNLDPMFNDDEDLEDGISVIVYDIEGREYDMIFKLWASKLYVLTKSWKEFYKTN 194

Query: 158 NL-EANESVTMGMFRHANTGRLCFAI 183
           +L +  E +++ MFRH  T +LCFAI
Sbjct: 195 DLTQPGEFISVWMFRHVVTQKLCFAI 220

[Close]

BLAST of Sed0017653.1 vs. ExPASy TrEMBL
Match: A0A5D3BAS8 (Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00040 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 9.9e-26
Identity = 66/142 (46.48%), Postives = 90/142 (63.38%), Query Frame = 0


Query: 42  DNNEQRPLLPLAAVGDAPEVSPWMREFADIIGVHSPSFVKKLTITDMSVNHGRVTVSKEF 101
           +NN    +  + A  D   + P M    +IIG  SP FVK+LT TD++ + GR+ + KEF
Sbjct: 78  NNNNNENVAAVVADRDLGRLPP-MAVIQNIIGECSPPFVKQLTKTDVTDSQGRLALHKEF 137

Query: 102 VELNLVPLFNADENLNEGIDVMVFDAQRRAYNMTFKRWSNKLYVLTKGWNRFVQTNNL-E 161
           V  NLVP+FN DE L  GI V V+D++ R Y+MTF+ W++KLYVLTK W +F   N L  
Sbjct: 138 VNRNLVPMFNGDEILTNGISVTVYDSEGREYDMTFRLWTSKLYVLTKSWKKFYHDNGLTR 197

Query: 162 ANESVTMGMFRHANTGRLCFAI 183
            +E +T+ MFRH    +LCFAI
Sbjct: 198 PDEFITLWMFRHVVNHKLCFAI 218

[Close]

BLAST of Sed0017653.1 vs. ExPASy TrEMBL
Match: A0A0A0LC65 (TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G609250 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.1e-24
Identity = 60/119 (50.42%), Postives = 82/119 (68.91%), Query Frame = 0


Query: 65  MREFADIIGVHSPSFVKKLTITDMSVNHGRVTVSKEFVELNLVPLFNADENLNEGIDVMV 124
           M    +IIG  SP FVK+L  TD++ + GR+ + KEFV  NL+P+FN  ENL  GI V V
Sbjct: 1   MAVIQNIIGECSPPFVKQLMKTDVTESQGRLALHKEFVTRNLIPMFNRGENLKNGISVTV 60

Query: 125 FDAQRRAYNMTFKRWSNKLYVLTKGWNRFVQTNNL-EANESVTMGMFRHANTGRLCFAI 183
           +D++ R Y+M FK W++KLYVLTK WN+F ++NNL    E +++ MFRH    +LCFAI
Sbjct: 61  YDSEGREYDMIFKFWTSKLYVLTKSWNKFYKSNNLTRPGEFISVWMFRHVVNRKLCFAI 119

[Close]

BLAST of Sed0017653.1 vs. ExPASy TrEMBL
Match: A0A6J1CTE7 (putative B3 domain-containing protein At4g03170 OS=Momordica charantia OX=3673 GN=LOC111014582 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.7e-22
Identity = 63/151 (41.72%), Postives = 89/151 (58.94%), Query Frame = 0


Query: 38  NKEQDNNEQRPLLPLAAVGDAPEVSPWMREFADIIGVHSPSFVKKLTITDMSVNHGRVTV 97
           N   D  E+R + P+ A+              D+IG  S ++ K+LT++D++   GR+ +
Sbjct: 97  NNNNDGEERRGMPPVPAI-------------RDVIGQCSRAYEKRLTVSDVAEAQGRLAI 156

Query: 98  SKEFVELNLVPLFN---ADENLNEGIDVMVFDAQRRAYNMTFKRWSNKLYVLTKGWNRFV 157
            KEFV   L P+FN    +ENL EGI+V V++ + R + MTFK W++KLYVL KGW  F 
Sbjct: 157 GKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFC 216

Query: 158 QTNNL---EANESVTMGMFRHANTGRLCFAI 183
           + NNL    A E +T+ MFRH  T  LCFAI
Sbjct: 217 KANNLTHAHAGEFLTLWMFRHRRTHGLCFAI 234

[Close]

BLAST of Sed0017653.1 vs. ExPASy TrEMBL
Match: V7BSP3 (TF-B3 domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G031300g PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.0e-22
Identity = 51/125 (40.80%), Postives = 80/125 (64.00%), Query Frame = 0


Query: 58  APEVSPWMREFADIIGVHSPSFVKKLTITDMSVNHGRVTVSKEFVELNLVPLFNADENLN 117
           +P   P M  F + I  H     KKLT +D++VN  R+ ++K  VE + +PL   DEN+ 
Sbjct: 76  SPSSLPAMENFREYILEHGEPLHKKLTTSDVNVNQNRLLLNKNHVEKSFLPLLKNDENIE 135

Query: 118 EGIDVMVFDAQRRAYNMTFKRWSNKLYVLTKGWNRFVQTNNLEANESVTMGMFRHANTGR 177
            GI V V+DA +  +++TFK+W+NK YVL  GW  F Q + L+ ++S+T+ +FRH++  +
Sbjct: 136 RGIQVPVYDAHQNTFSLTFKKWTNKYYVLNGGWKDFFQVHKLQKDDSITVCIFRHSSHNK 195

Query: 178 LCFAI 183
           LCFA+
Sbjct: 196 LCFAL 200

[Close]

BLAST of Sed0017653.1 vs. TAIR 10
Match: AT4G03170.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 71.2 bits (173), Expect = 9.5e-13
Identity = 41/115 (35.65%), Postives = 63/115 (54.78%), Query Frame = 0


Query: 70  DIIGVHSPSFVKKLTITDMSVNHGRVTVSKEFVELNLVPLFNADENLNEGIDVMVFDAQR 129
           ++  + S    K+L  +D+  +   + +SKE V+  ++P     EN  +GIDV V+    
Sbjct: 127 EVTRLFSRPIKKQLMSSDVDKDQCMLMLSKEQVKEKMLPFLEDSENPVKGIDVSVYGPDG 186

Query: 130 RAYNMTFKRWS-NKLYVLTKGWNRFVQTNNLEAN-ESVTMGMFRHANTGRLCFAI 183
           +   M FK W+ +K  VLT GW +FV+   L    + VT+ MFRH  T +LCFAI
Sbjct: 187 KVQQMEFKMWNGDKTPVLTSGWKQFVEDYGLSMTCDFVTVWMFRHIKTRKLCFAI 241

[Close]

BLAST of Sed0017653.1 vs. TAIR 10
Match: AT1G20600.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 52.0 bits (123), Expect = 6.0e-07
Identity = 30/90 (33.33%), Postives = 49/90 (54.44%), Query Frame = 0


Query: 81  KKLTITDMSVNHGRVTVSKEFVELNLVPLFNADENLNEGIDVMVFDAQRRAYNMTFKRWS 140
           K+L  +D+  +  R+ +SKE V+  ++P     E+  +G+DV V+        M FK W+
Sbjct: 127 KQLMSSDVDTDQSRLMLSKEQVKEKMLPFLEESEDPVKGVDVSVYGPDGEVQQMKFKMWN 186

Query: 141 -NKLYVLTKGWNRFVQTNN-LEANESVTMG 169
            +K  VLT GW +FV     L+ ++ VT G
Sbjct: 187 GDKTPVLTSGWMQFVADYGLLKTSDFVTDG 216

[Close]

BLAST of Sed0017653.1 vs. TAIR 10
Match: AT1G68840.1 (related to ABI3/VP1 2 )

HSP 1 Score: 49.7 bits (117), Expect = 3.0e-06
Identity = 34/127 (26.77%), Postives = 62/127 (48.82%), Query Frame = 0


Query: 41  QDNNEQRPLLPLAAVGDAPEVSPWMREFADIIGVHSPSFVKKLTITDMSVNHGRVTVSKE 100
           + NN+++  L + A G     S    +   ++      F K +T +D+     R+ + K+
Sbjct: 152 EQNNKRQLFLSVDANGKRNGSSTTQND--KVLKTREVLFEKAVTPSDVG-KLNRLVIPKQ 211

Query: 101 FVELNLVPLFNADENLNEGIDVMVFDAQRRAYNMTFKRW-SNKLYVLTKGWNRFVQTNNL 160
             E +  PL +    + +G+ +   D   + +   +  W S++ YVLTKGW+RFV+  NL
Sbjct: 212 HAEKHF-PLPSPSPAVTKGVLINFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNL 271

Query: 161 EANESVT 167
            A + VT
Sbjct: 272 RAGDVVT 274

[Close]

BLAST of Sed0017653.1 vs. TAIR 10
Match: AT1G68840.2 (related to ABI3/VP1 2 )

HSP 1 Score: 49.7 bits (117), Expect = 3.0e-06
Identity = 34/127 (26.77%), Postives = 62/127 (48.82%), Query Frame = 0


Query: 41  QDNNEQRPLLPLAAVGDAPEVSPWMREFADIIGVHSPSFVKKLTITDMSVNHGRVTVSKE 100
           + NN+++  L + A G     S    +   ++      F K +T +D+     R+ + K+
Sbjct: 152 EQNNKRQLFLSVDANGKRNGSSTTQND--KVLKTREVLFEKAVTPSDVG-KLNRLVIPKQ 211

Query: 101 FVELNLVPLFNADENLNEGIDVMVFDAQRRAYNMTFKRW-SNKLYVLTKGWNRFVQTNNL 160
             E +  PL +    + +G+ +   D   + +   +  W S++ YVLTKGW+RFV+  NL
Sbjct: 212 HAEKHF-PLPSPSPAVTKGVLINFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNL 271

Query: 161 EANESVT 167
            A + VT
Sbjct: 272 RAGDVVT 274

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BLAST of Sed0017653.1 vs. TAIR 10
Match: AT2G36080.2 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 45.1 bits (105), Expect = 7.3e-05
Identity = 29/108 (26.85%), Postives = 54/108 (50.00%), Query Frame = 0


Query: 70  DIIGVHSPSFVKKLTITDMSVNHGRVTVSKEFVELNLVPLFNADENLNEGIDVMVFDAQR 129
           D++      F K LT +D+     R+ + K+  E        A + + +G+ +   D + 
Sbjct: 29  DVVEEKEALFEKPLTPSDVG-KLNRLVIPKQHAERYFPLAAAAADAVEKGLLLCFEDEEG 88

Query: 130 RAYNMTFKRW-SNKLYVLTKGWNRFVQTNNLEANESVTMGMFRHANTG 177
           + +   +  W S++ YVLTKGW+R+V+  +L+A + V     RH + G
Sbjct: 89  KPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDAGDVVL--FHRHRSDG 133

The following BLAST results are available for this feature:

BLAST of Sed0017653.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023605.1	2.6e-28	46.75	putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6589940.1	5.8e-28	46.10	putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. so...	[more]
KGN56101.1	7.5e-28	47.26	hypothetical protein Csa_010492 [Cucumis sativus]	[more]
KAA0043114.1	2.0e-25	46.48	putative B3 domain-containing protein [Cucumis melo var. makuwa] >TYJ96217.1 put...	[more]
XP_031736688.1	3.5e-25	39.11	uncharacterized protein LOC116402065 [Cucumis sativus]	[more]

BLAST of Sed0017653.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZR14	1.3e-11	35.65	Putative B3 domain-containing protein At4g03170 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LM90	8.4e-06	33.33	B3 domain-containing protein At1g20600 OS=Arabidopsis thaliana OX=3702 GN=At1g20...	[more]
P82280	4.2e-05	26.77	AP2/ERF and B3 domain-containing transcription repressor RAV2 OS=Arabidopsis tha...	[more]

BLAST of Sed0017653.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7L0	3.6e-28	47.26	TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G073910 PE=4 ...	[more]
A0A5D3BAS8	9.9e-26	46.48	Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A0A0LC65	1.1e-24	50.42	TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G609250 PE=4 ...	[more]
A0A6J1CTE7	1.7e-22	41.72	putative B3 domain-containing protein At4g03170 OS=Momordica charantia OX=3673 G...	[more]
V7BSP3	3.0e-22	40.80	TF-B3 domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G03130...	[more]

BLAST of Sed0017653.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03170.1	9.5e-13	35.65	AP2/B3-like transcriptional factor family protein	[more]
AT1G20600.1	6.0e-07	33.33	AP2/B3-like transcriptional factor family protein	[more]
AT1G68840.1	3.0e-06	26.77	related to ABI3/VP1 2	[more]
AT1G68840.2	3.0e-06	26.77	related to ABI3/VP1 2	[more]
AT2G36080.2	7.3e-05	26.85	AP2/B3-like transcriptional factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003340	B3 DNA binding domain	SMART	SM01019	B3_2	coord: 79..182 e-value: 2.4E-6 score: 37.1
IPR003340	B3 DNA binding domain	PFAM	PF02362	B3	coord: 82..182 e-value: 4.7E-12 score: 45.7
IPR003340	B3 DNA binding domain	PROSITE	PS50863	B3	coord: 80..184 score: 11.913596
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 77..182 e-value: 1.4734E-16 score: 69.2789
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 74..184 e-value: 1.7E-21 score: 77.9
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 77..174
IPR005508	B3 domain-containing protein At2g31720-like	PANTHER	PTHR31541	B3 DOMAIN PLANT PROTEIN-RELATED	coord: 37..183
None	No IPR available	PANTHER	PTHR31541:SF28	B3 DOMAIN PLANT PROTEIN	coord: 37..183

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0017653	Sed0017653	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0017653.1-exon	Sed0017653.1-exon-LG08:6244578..6245132	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0017653.1-cds	Sed0017653.1-cds-LG08:6244578..6245132	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0017653.1	Sed0017653.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding