Sed0017064.2 (mRNA) Chayote v1

Overview
NameSed0017064.2
TypemRNA
OrganismSechium edule (Chayote v1)
DescriptionFK506-binding protein 15 kD-1
LocationLG12: 7572571 .. 7575924 (+)
Sequence length2038
RNA-Seq ExpressionSed0017064.2
SyntenySed0017064.2
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGAAAAGGGGATGAAAAATGGAGTTAAAAAATAAGCTCATTTAAATTGTTTGTTTGGAAAAAAATAATAGAAAAGAAAAACAAAAGATCAAACTCTAGGTCTTCTCCATCTTCATCTTCTTCACCCCTTAGCCGCCACTGTTCATCCATTGCCGCTGCCGCACAGGCTGAGTCGTGCCACCGTTGCTGCTACCCAGATTGTGCCGCCTGACCATACCCCGCAGCAGCAACACGTCCATGAGCCGTGGATCTGCCGCACCAACTGCCGCAAACACGCCCAACACGCGCACGCCCAACCGCTAACACGCCCATCTTCACCTTTTGCAACGCCTACACCAACCCACCTCGCACCCGCCCCCTTGCTCGCACCATACTGCCGCAAACAGGCCCCCTTGGCCGTCGTTTTCGTACACTCACAAATGCCATCCGCGCGCACGCAGTCGCAGCAGCAAGGATCTTCTCGCGCACGCGACCTGCTCGTCCCCAATGGGTCGTCGCCTTCCGGTCGTCCTCACTCAGCAGCTGCGCCCAGCTCATCTCGCACCTCCTTGCAGCCACACCCAACACCTTTTCCTCCTCACCACCGCAGCCCCACCTTGCAGCCACAAATCTGTGTGGTGTCGTGCTCATTTGGGTCAAGTTTTGGGGTAAGATCACTAAACCCGACACTGTTTAGATGTTGTAAATCTTGTAGGTTTGGTTGTTGATTATAGAAACTAAAAATTGGAGTTTCACTCCACTATAATCGAGGTAAGCAGGTTCGTCCTCCCTAGCTTTGGCACTGGGAGACATCTAAGGAATTGAGTATACTTGATCACTACTTGATATTCAATTTTTTAGTTTCATGTATTGGATGAAAGACATAATGATTTTGTTGTTATGATTTTGTTGTTTTATTTTTTTGCCTTTTCTCTCCCTCCTTTGTGGAGTTTGAATTGTTGAAAAGTTTCGTTTCTTGTTAAGAAAATGTCTTTTCAATCACTGGCATTATAGGGAGAAAGGTGATAATTATGTCTACAAGTTGCGTTTTTTTCCTTAGCTTTTCCCAATTGAAATCAGTGATAACCTTGTCAAATAAGGGCTTTGTAAATAATAGCATGTTTAGAGGTCATAATTTCAATCCATAGTGGTCTCCTACATAGGAGTAAGTTTCCTACAAGTAATCTTGACTATTAAATGCAGTAGGATGAGATGATTGTCCTGTGAGAATAGTGGAAGTGTGCATCAGCCGGTCAGAACACTCACGGATATATAAAAGAAAGTTGCAATGAGTTATGTTTGATGTTGTACTGCCTGTCTTAAGATTCTGGAATATGTTACTCTATCTGGAACACTCCTTCAGCCTTTTCTCGTTAAGTTTTTGTTTTTGTGTTTCTTTTCTATTTATTCTTTTTTTTTTTTTGCAGGGTAGGCCATCATCTTGTGATATTCAAGCTCATAAAGGTGATAGAATCAAAGTTCACTACCGCGTAAGTTGCATTGATGACTTAGTTTGGCTCTTGTGTTTGTGTCTGGTCAATTGGTTAATGCTAGGTAATGGATTATAAAGGAAGAATTGGGGAACATTCTAGACTGATCTTTGTTGTCCTCTGATTCAATAGGGGAAGCTCACAGATGAGACTGTCTTTGACTCCAGTTTTGAAAGGGGTGACCCAATTGAATTTGAGCTTGGCGCTGGTCGAGTAATTAAAGGTATTTGTGCACAAAACATTAGTCTTTGGTAAAAATAATTATATTGCAACCTAAATAGTTTTTTTGTTGTTACTGTTATTATTTGTTTTGAATGTTTCCTTATTCTTCATCATTGTCCTGGACTGGATGTGTGAGCTCAGCTATGGTCAAGTAATTATTCATCTATTGTTATAGATCTCAAATAGTTTATATATTGCCTAAAAGCTATCAGTACCACTGAGAAGCTCTCCAGAGATCCTCATCATAATTCACTTCCCTTAGACAGCCTTGCATTCACTCCGGATCCCATGCTTAGATCGTTCACATCAAGTAGATACAAGGAATTTCACTAAATACACCTTTCTGACTAAATATTTTTCCACTTAAACTTAAACTATCACAAATTTCTCTTCTTAGCCCTGCCCTTCTTGCTTAAGCTGACATAATCGGAGGCCTATCAATACTAAAGGGCATAAATATCAATGATTACATTATGATTCTCATGGACATTATAACTCTATTTTCCCTTGATGATGAGAATCATCAAGTTGGTGATTTTGAGAATTTGATTGTTGTCGATTAGTATTTGTTTAATGTTGTTGAATATTATTCCATATTGTTGAACTGATTGAAGGTAGTAGACCCCAGTAACCAAATCTCAGATAATTTTGATGGAAAGGACATGTATGTGCATCTTGCAGACAATTTTGATGCTCCAAAGGTTATTGATTTTCTTAATTTTCCCTCTTTGCAAGGATACAATTATAAAAAATATATTATTGTTTATTGAGTTTATTTCTACAAGTACATCTCTGCAAATCTTGTGAAAAAATATTTAACTAATTTCTTTTTACAGGGGCAAAATGTGGTATCTATGGAACAAATTCTTAATAGTGGATAATGATTATGGAGGTAGAGTTTTACTCCTTTATATTATGTCTTTTTTTATAAAAAAAAAAACACATTTGTTCTACCGTTAAAGCTAGTTATGATAGATTGGGGAATTTGCCATTTACTTTCTTTGGTTTTGTTGGTATGAAGTTGGTCCTTTTGATAGCACTATTGACGATTTAGGGAACTTGCGGGTTACACGAAGATTAGGTTGTTCAAAAAAAAAATTTATGAAAAAGTGTTAAGGCAACTATAAGCACTATGTTCATGAAAGTTGTGATTTTGTGATGTATTTTTCTCGTTTTCATTTAAATTTGCTCTCTTCGTAATTGTTGTTTGTTGCTTGATGTTTATATTTCTTTTTGAGATGATGTTTTTTTTTCTTGTCACATTTCCTCTTCTGATCTTTTATTTCCTCTTAAGTACCTCTCCCTCTCCATTAGGCTTTGACTCATCAATATTGCTCTCTATATTTACTAATTATGTAAGGATATTATGTGAGCCTGTAGGATTTATATTCAATGACTATCATCCACATATATGTGGTATTTGATATTTGAAAGCTCGTTTAATCTCAGATATTGTCGATATGGTTGAAGATACTTTGAAGATAGATATGTTGCAGCAACTTTTGGATTCATATTTGCAACATGGAGGTGAATCAATCCAATAAAGAAGTCACATCTTGTCTTGGTGTAATCATGAATATTTTTCAATTTATATTTATTGATGTCATGAACAATATATATTTTTTCATTTAACTATATTTACGTCGATACATGTATAAAATACT

mRNA sequence

CGAAAAGGGGATGAAAAATGGAGTTAAAAAATAAGCTCATTTAAATTGTTTGTTTGGAAAAAAATAATAGAAAAGAAAAACAAAAGATCAAACTCTAGGTCTTCTCCATCTTCATCTTCTTCACCCCTTAGCCGCCACTGTTCATCCATTGCCGCTGCCGCACAGGCTGAGTCGTGCCACCGTTGCTGCTACCCAGATTGTGCCGCCTGACCATACCCCGCAGCAGCAACACGTCCATGAGCCGTGGATCTGCCGCACCAACTGCCGCAAACACGCCCAACACGCGCACGCCCAACCGCTAACACGCCCATCTTCACCTTTTGCAACGCCTACACCAACCCACCTCGCACCCGCCCCCTTGCTCGCACCATACTGCCGCAAACAGGCCCCCTTGGCCGTCGTTTTCGTACACTCACAAATGCCATCCGCGCGCACGCAGTCGCAGCAGCAAGGATCTTCTCGCGCACGCGACCTGCTCGTCCCCAATGGGTCGTCGCCTTCCGGTCGTCCTCACTCAGCAGCTGCGCCCAGCTCATCTCGCACCTCCTTGCAGCCACACCCAACACCTTTTCCTCCTCACCACCGCAGCCCCACCTTGCAGCCACAAATCTGTGTGGTGTCGTGCTCATTTGGGTCAAGTTTTGGGGGTAGGCCATCATCTTGTGATATTCAAGCTCATAAAGGTGATAGAATCAAAGTTCACTACCGCGTAAGTTGCATTGATGACTTAGTTTGGCTCTTGTGTTTGTGTCTGGTCAATTGGTTAATGCTAGGTAATGGATTATAAAGGAAGAATTGGGGAACATTCTAGACTGATCTTTGTTGTCCTCTGATTCAATAGGGGAAGCTCACAGATGAGACTGTCTTTGACTCCAGTTTTGAAAGGGGTGACCCAATTGAATTTGAGCTTGGCGCTGGTCGAGTAATTAAAGGTATTTGTGCACAAAACATTAGTCTTTGGTAAAAATAATTATATTGCAACCTAAATAGTTTTTTTGTTGTTACTGTTATTATTTGTTTTGAATGTTTCCTTATTCTTCATCATTGTCCTGGACTGGATGTGTGAGCTCAGCTATGGTCAAGTAATTATTCATCTATTGTTATAGATCTCAAATAGTTTATATATTGCCTAAAAGCTATCAGTACCACTGAGAAGCTCTCCAGAGATCCTCATCATAATTCACTTCCCTTAGACAGCCTTGCATTCACTCCGGATCCCATGCTTAGATCGTTCACATCAAGTAGATACAAGGAATTTCACTAAATACACCTTTCTGACTAAATATTTTTCCACTTAAACTTAAACTATCACAAATTTCTCTTCTTAGCCCTGCCCTTCTTGCTTAAGCTGACATAATCGGAGGCCTATCAATACTAAAGGGCATAAATATCAATGATTACATTATGATTCTCATGGACATTATAACTCTATTTTCCCTTGATGATGAGAATCATCAAGTTGGTGATTTTGAGAATTTGATTGTTGTCGATTAGTATTTGTTTAATGTTGTTGAATATTATTCCATATTGTTGAACTGATTGAAGGTAGTAGACCCCAGTAACCAAATCTCAGATAATTTTGATGGAAAGGACATGTATGTGCATCTTGCAGACAATTTTGATGCTCCAAAGGTTATTGATTTTCTTAATTTTCCCTCTTTGCAAGGATACAATTATAAAAAATATATTATTGTTTATTGAGTTTATTTCTACAAGTACATCTCTGCAAATCTTGTGAAAAAATATTTAACTAATTTCTTTTTACAGGGGCAAAATGTGGTATCTATGGAACAAATTCTTAATAGTGGATAATGATTATGGAGATATTGTCGATATGGTTGAAGATACTTTGAAGATAGATATGTTGCAGCAACTTTTGGATTCATATTTGCAACATGGAGGTGAATCAATCCAATAAAGAAGTCACATCTTGTCTTGGTGTAATCATGAATATTTTTCAATTTATATTTATTGATGTCATGAACAATATATATTTTTTCATTTAACTATATTTACGTCGATACATGTATAAAATACT

Coding sequence (CDS)

ATGCCATCCGCGCGCACGCAGTCGCAGCAGCAAGGATCTTCTCGCGCACGCGACCTGCTCGTCCCCAATGGGTCGTCGCCTTCCGGTCGTCCTCACTCAGCAGCTGCGCCCAGCTCATCTCGCACCTCCTTGCAGCCACACCCAACACCTTTTCCTCCTCACCACCGCAGCCCCACCTTGCAGCCACAAATCTGTGTGGTGTCGTGCTCATTTGGGTCAAGTTTTGGGGGTAGGCCATCATCTTGTGATATTCAAGCTCATAAAGGTGATAGAATCAAAGTTCACTACCGCGTAAGTTGCATTGATGACTTAGTTTGGCTCTTGTGTTTGTGTCTGGTCAATTGGTTAATGCTAGGTAATGGATTATAA

Protein sequence

MPSARTQSQQQGSSRARDLLVPNGSSPSGRPHSAAAPSSSRTSLQPHPTPFPPHHRSPTLQPQICVVSCSFGSSFGGRPSSCDIQAHKGDRIKVHYRVSCIDDLVWLLCLCLVNWLMLGNGL
Homology
[Close]
BLAST of Sed0017064.2 vs. TAIR 10
Match: AT3G25220.1 (FK506-binding protein 15 kD-1 )

HSP 1 Score: 43.5 bits (101), Expect = 1.4e-04
Identity = 17/29 (58.62%), Postives = 21/29 (72.41%), Query Frame = 0 

Query: 78  RPSSCDIQAHKGDRIKVHYRVSCIDDLVW 107
           +P  CD+QAHKGD+IKVHYR    D  V+
Sbjct: 41  KPQKCDLQAHKGDKIKVHYRGKLTDGTVF 69

[Close]
BLAST of Sed0017064.2 vs. TAIR 10
Match: AT5G48580.1 (FK506- and rapamycin-binding protein 15 kD-2 )

HSP 1 Score: 41.6 bits (96), Expect = 5.3e-04
Identity = 16/29 (55.17%), Postives = 21/29 (72.41%), Query Frame = 0 

Query: 78  RPSSCDIQAHKGDRIKVHYRVSCIDDLVW 107
           +P +C++QAHKGD IKVHYR    D  V+
Sbjct: 41  KPKTCEVQAHKGDTIKVHYRGKLTDGTVF 69

The following BLAST results are available for this feature:
BLAST of Sed0017064.2 vs.
Match NameE-valueIdentityDescription
BLAST of Sed0017064.2 vs.
Match NameE-valueIdentityDescription
BLAST of Sed0017064.2 vs.
Match NameE-valueIdentityDescription
BLAST of Sed0017064.2 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G25220.11.4e-0458.62FK506-binding protein 15 kD-1 [more]
AT5G48580.15.3e-0455.17FK506- and rapamycin-binding protein 15 kD-2 [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..58

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Sed0017064Sed0017064gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0017064.2-five_prime_utrSed0017064.2-five_prime_utr-LG12:7572571..7572988five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0017064.2-exonSed0017064.2-exon-LG12:7572571..7573216exon
Sed0017064.2-exonSed0017064.2-exon-LG12:7573976..7575152exon
Sed0017064.2-exonSed0017064.2-exon-LG12:7575710..7575924exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0017064.2-cdsSed0017064.2-cds-LG12:7572989..7573216CDS
Sed0017064.2-cdsSed0017064.2-cds-LG12:7573976..7574116CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0017064.2-three_prime_utrSed0017064.2-three_prime_utr-LG12:7574117..7575152three_prime_UTR
Sed0017064.2-three_prime_utrSed0017064.2-three_prime_utr-LG12:7575710..7575924three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Sed0017064.2Sed0017064.2-proteinpolypeptide