Sed0016535.1 (mRNA) Chayote v1

Overview


Name	Sed0016535.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG06: 15452831 .. 15453504 (-)
Sequence length	621
RNA-Seq Expression	Sed0016535.1
Synteny	Sed0016535.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAGAAGAGAAAAAAGGAGGAAAAGATAAAGAAGAGGGATGCAAAGGAAGCTGCAGCAAAGGTGAGTGAAGAGCTATTGGCCTTTGAGGCTGATAAGCGAGTGATGGAGCTCCATGTAGCCTCTATGGCTAAGTGGATCCTTGTTGAAGTTTTTGCGGCTTCTATGATTGAAGTAGAGAGAAGAGAAGAGATCTATGAAGCTAGCGACCCAGCGAGGGCTATTCTGCCCTTCATTGAGTCGGTTCCAGATGTTAGCATACCGGTCGTCGGAACGGATGATGCACAAGTGACACCTGTCACTCTGATCTTCATGCTTTGACGATGGTAATAGATAAGTAGGAAGAGGAAATAGATAGGGTCAAGCTATCCGAGTTCACTCTAGCGGAGGAAGTAAACGTACCCAAACATCCAACTGAGGTTAACGCTAGAGCGAGGAGCCTAGCTGCGAATAGAGAAATCGAACTGAACGAGGAAGCTCTGGTGGAGGATAACACTGAGGCGAACACCATAGGCGAAGGGAACAAAGAGGATGACATAGACGTCATGGTAGATGAGGGTTGCGAATTCTTCTTGACTAAGAAACGAGCAAAAAATTTAAATGTCGAGTCTAGTGAAAGAAGCGAGCCCGAGTGTGAAGTCAAGGAAAGAAGTCTTTCTAAGACTCCCTAG

mRNA sequence

ATGGATGAGAAGAGAAAAAAGGAGGAAAAGATAAAGAAGAGGGATGCAAAGGAAGCTGCAGCAAAGGTGAGTGAAGAGCTATTGGCCTTTGAGGCTGATAAGCGAGTGATGGAGCTCCATGTAGCCTCTATGGCTAAGTGGATCCTTGTTGAAGTTTTTGCGGCTTCTATGATTGAAGTAGAGAGAAGAGAAGAGATCTATGAAGCTAGCGACCCAGCGAGGGCTATTCTGCCCTTCATTGAGTCGGTTCCAGATGTTAGCATACCGGTCGTCGGAACGGATGATGCACAAGAAGAGGAAATAGATAGGGTCAAGCTATCCGAGTTCACTCTAGCGGAGGAAGTAAACGTACCCAAACATCCAACTGAGGTTAACGCTAGAGCGAGGAGCCTAGCTGCGAATAGAGAAATCGAACTGAACGAGGAAGCTCTGGTGGAGGATAACACTGAGGCGAACACCATAGGCGAAGGGAACAAAGAGGATGACATAGACGTCATGGTAGATGAGGGTTGCGAATTCTTCTTGACTAAGAAACGAGCAAAAAATTTAAATGTCGAGTCTAGTGAAAGAAGCGAGCCCGAGTGTGAAGTCAAGGAAAGAAGTCTTTCTAAGACTCCCTAG

Coding sequence (CDS)

ATGGATGAGAAGAGAAAAAAGGAGGAAAAGATAAAGAAGAGGGATGCAAAGGAAGCTGCAGCAAAGGTGAGTGAAGAGCTATTGGCCTTTGAGGCTGATAAGCGAGTGATGGAGCTCCATGTAGCCTCTATGGCTAAGTGGATCCTTGTTGAAGTTTTTGCGGCTTCTATGATTGAAGTAGAGAGAAGAGAAGAGATCTATGAAGCTAGCGACCCAGCGAGGGCTATTCTGCCCTTCATTGAGTCGGTTCCAGATGTTAGCATACCGGTCGTCGGAACGGATGATGCACAAGAAGAGGAAATAGATAGGGTCAAGCTATCCGAGTTCACTCTAGCGGAGGAAGTAAACGTACCCAAACATCCAACTGAGGTTAACGCTAGAGCGAGGAGCCTAGCTGCGAATAGAGAAATCGAACTGAACGAGGAAGCTCTGGTGGAGGATAACACTGAGGCGAACACCATAGGCGAAGGGAACAAAGAGGATGACATAGACGTCATGGTAGATGAGGGTTGCGAATTCTTCTTGACTAAGAAACGAGCAAAAAATTTAAATGTCGAGTCTAGTGAAAGAAGCGAGCCCGAGTGTGAAGTCAAGGAAAGAAGTCTTTCTAAGACTCCCTAG

Protein sequence

MDEKRKKEEKIKKRDAKEAAAKVSEELLAFEADKRVMELHVASMAKWILVEVFAASMIEVERREEIYEASDPARAILPFIESVPDVSIPVVGTDDAQEEEIDRVKLSEFTLAEEVNVPKHPTEVNARARSLAANREIELNEEALVEDNTEANTIGEGNKEDDIDVMVDEGCEFFLTKKRAKNLNVESSERSEPECEVKERSLSKTP

Homology

The following BLAST results are available for this feature:

BLAST of Sed0016535.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0016535.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0016535.1 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0016535.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 6..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..206

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0016535	Sed0016535	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016535.1-exon	Sed0016535.1-exon-LG06:15452831..15453160	exon
Sed0016535.1-exon	Sed0016535.1-exon-LG06:15453214..15453504	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016535.1-cds	Sed0016535.1-cds-LG06:15452831..15453160	CDS
Sed0016535.1-cds	Sed0016535.1-cds-LG06:15453214..15453504	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0016535.1	Sed0016535.1-protein	polypeptide