Sed0016516.1 (mRNA) Chayote v1

Overview


Name	Sed0016516.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG05: 36124942 .. 36129412 (+)
Sequence length	758
RNA-Seq Expression	Sed0016516.1
Synteny	Sed0016516.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGACAACCAAATAATCGATCGCCCAAGCTCCGAAGTCTGTAAGGTTCTCGCCGGAGAAGTGCCGACCTCGCCGTCAACCATTTTTTAGGTTGGTGAAATCTTCTTCTTCTTCTCTGCATGCGATAATATACATTATTGTTTGATTAATTCATCCTGATTTCTTCGATCATGCGACTTCATTGTTTCTGCAAACACCAGTGATTAGCTCGCATTCTGTTGTTCATTCTAATTTCTCATCAAATTTGATCATTAGGACTTGAGAATTCCTGTTTCAGAGTCAAGAAATGGATGTAAACAGAAATGTAGGTTTATGATAGGGTTCTACAGATTCACACTTGATAACTGGTTGAGGATGGAACTTGGAATTTAACCTAAAATGAACTACTAATTCTTCGTTCATTTCTCTGTGTGGGGGTTTTTTTTTTTTAATGAAGAGATGGAACTAGTTTTTTTTTACTGTATCTGCACCATTAATGAATTGAATTAATACATTTTCTTGAAATCCCATGAATTATTTTGAAGTTGGGATAGAGTTTGTGTGCTGATATTTAATCACTTGCTTTCAATTTTGCCTTTTTGTGAAACTTTTTTTTTTATGTAAACAAAACCTTCGTTGATGTGTGTAAAGATTACAAGTCGTATTGAAAGATTACAAAACAAACTATGCCATTGCCATTAGGATATAATAGTGTAGACAAATCATAGTTAGAATATGGAGTGTCTCCAAGGGGTGGTACAATGGTTGAAGACTTGGATTTTGAAGATATTCTCCCTTCAAGGTCCCAGGTTCGAGCTCACCTGCTACATTACTCCTTCGATGTCTCGCAGTGCCTGACCTAGGGACGGGCGTAATTACCCTTGTTTCAAAAAAAAAAGTTAGAATAGGGAGGGGTTGTATGATACCAATACAACGCCAAAAAAGTAGCAGAATCCCCAGGCAGTGTTTTAAAAAGCGCAAGGCGCATTGGCCCTCTAGAGCCTGAGGCGCAAGGCGCACCAAAAGGCGAGGGCTTTTTTATAAGACGCACTACATAAAAAAACACAAAAAAATTATAGACAATAAAATCACTTTTCATGGACATAAATAAAGTTTTAACCAAGAATAATATATAAAACATACATAATATTCTACTATCAACCTTCACACGCTTCCAATGACCTAGTACGGGGATCTGAAACACAAAAAACGCAAAGGAAAATTAAAAATCTCACAAGGCGCGTGCCTTTTGGCGCCCGGGGCTTCACGTAAGGCGCCATAAGGCGCGCACCTTATTACGTGCGCCTCACCTAGGACAAGCGAGGCGCAAAAGGTGGGACTTGAGCCCAAGCGCGCCTTTTAAAACACTGTCCACAAGTGAGCTAAATTCCTTGGGGAATAATCCATCACGAACAGTATGCTATTGCGTTCCTTCCAGCAAATCCAAAGGATCTCTCTCTCTTTCTTGAATGGATGGCCCATAAGAACATGACGGAGGAGATCAGGAGCTGGTTTAGGAAGAGGAGTGGACCAGCCAAAAGCATTAGTCCAAAATTTACCGGAGAGGTGGCAACCATAAAATAAGTGATGCTGAGATTTAGAGTCCATCAGACACAAAGAACATATAGATGGATATAGATGGTTGAAGGGATGAGTGAGCAAATTTCCTTTGCAAAATGTCATTAGAATTAATAGCACCTTTACCGAGTTCCCAAACAAAGAACTTCACCTTCTTAGATTGAGGTCCCTTGCATAACTGTCTGTGGAACTCTTGATTCTGTTGGTCTCCATCACTGTGTGTCAATTTTTTATACAGTGATCCGGTAGAGAAGCTACCTGAATCCTGGAATTGGCCATAGCTATTAATCTTCAGTCTCATTAAGCTTGATTCGTGAAACTCTTGTGCTTGACTTTTGATGTTCTGATTGTTGAAGCTCTGTTTGGTAACTTTTTTACTTTTAGTTTTTGGTTTCTGATTTTGAAAATTAAACTTATTAACAATCCTTTTACTTATGGTTTTCTTTATTTGGTTATAATATGAATGTTATCAAAATTCAAGCTTAATTTTCAAAACTAAAAATTAGTTCCCGTTTGATGATAATCATTAGGTTTTTGTTTTTAAAAATTTTTCTTGATTTTTCATCATATTTCTTCAATGAATTTCATCTTTCATAACAAAATATTTGAATTCTTAGCTAAATTTCAAAAACAATCACAAGAGTTCGCAAACTGTTTCTTAAGTTTTTAAAACTTGGCTTGATTCTAAGAACAAAACAAGATAACTCATTAATGAATGTAATGTAGTATTTGTAGACTTAATTTTCATAATTTGAATGCTCATCAAAGGGAGCCTTAGTTTTTCAAAACTTGTTTTTCGTTTTTAGATTTTGACTAAGAATTCAAATGTTTCGTCAAGAAAGATGACAACTATGAAGTGAAATTATGAGAAAACATGCACAATTTTCAAAAACTAGAATTGAAAAAACCAAATATTCCTCCAAGGCATCAACCTCAATGTGGATGGGACCATGTTCTACAAAATAGTCATCTTTTCTACCTCAGGTTTTGTTATTGAACATGTCTGTTGATGTTCAATTTTAAAAATCCTTTCTGTAGTACATTGCTTGCTTGTTTCATTTTTACTTCTGTTGCTGAATGGTTTTTGTCTTTTTGAGTTACGTGTGTCTCTTTTGACACATTTTTTGGCCTATGTTTTGGCTCCTACCCTCTCTCCTTTCCCTGCTTCTAGTCTCTTTTCTCTCCTCTCTATGTTTCTTGATAGACATGTAACCAAATAGTTATCTCTCTTCTCTATGTTTCTTGGTAGACATGTAACCAAATAGTTATGGGGTTGAATGCTTTGATGGTTATACAGGAGACATTGACAGTTGAATGTTTTAATGTTGTACACTAACATTCCCTCTCTCTCTCTCTCGGCTAATATTGGAGTTGAACTTTGGTGCTGTTTCGCATAAGTGAATCAGTTCATTCAATCGAGGGATCGATATGGGAAGCAAAGAAAATGTTAAACATCTTGAGGACTGCTCAGTTTCAAAGTAAGCTCTCTCCCCCACCTTCCCTTTTCTTCTATATTGTTATCATCTCTGTTCCACTTTCTGATGCCTTTCTCCTTTCCCAATGTTTAAAACTGGAGTGTACTGTATGTTAGAAATTGAAAATTCTGTCTAGAATCTTTATATAGAACATCTCGCTGTGAATGTGTTCTCAGATTACATCTTTACAAAATTGGGCAGTTTTTTTGTTTTTCATGAGAAGCCTAGAGACTTATACTTGTTAACAACATTTTGAAGGTTAAAATAACGCCAATTTCTGATTTTAATACTTCATTTATCCTTGAATACTATTGCTTGTTTCTTGGATGGAATGGGAGTAGATTCGTCTTTTAAAAAAATGATACGTTCATTAACTCTGCTGTGGCCATTGCTCAATAGTTTTTGAGATTTACTTTAGATAATCTTAGGTAGTTTGGCTAAGTTGACAAAGAGAATCTTATGAAGTCTTATTACGATTTGTAATCTTAACTAGATTTTTTTTTAGGTTTCCTTGGTACTTTTTCGCGGAACAAACATTTTGGCCATACAATATTTAGTTGTCAAGAAAATTTATAAAAAATAAATTCCTAGGCAAGTCACTATGGATTGAATTCATCTTTCGGTTTGCTAAGACCCTCTTCATCACTAGGTCAATTCATGATGGTTTTAACTGGATTATTTTACCATCGTAATCTTGCTTTCGGCTCATTCGAGCATATAGTTTCACCTGTTTTTTTTCCCTCTCTTTTTGACTTATTTCTTATCTGTTTTAAATTTTGGATCATAAACTATATTATTTCTCCATGGTGTTTTCTCCTATTATTGTTCTGTTGACTTCATTTTCCCTTGAGATATTATTGATCTTTGAACATTCACAGTGCGTTGGGAACTTGGGTATTCTCAGTAGCTGGAGCCTTGCTAGCAATTCCAGTGGGAATAAAGAGGAAGTCTCTGGCCCCCCTTGTGTTTTTTGGCACAACTGGTACAATGCTTGACATTATAATGGGAATTACTAACTGCGAAAGGGAACACGCCGAGCGTCAAATGAAGCTATTAGAAGCACAAAACTCTGCAGCCGAAGCTTCTGTTGCCAAAACCGAGTCCCTTTCTTGATATCGCGTTTACATGTTTATTTCACTCGGTCATGTCGTGCCTACCGACCTTTTCTCCCCCAACCGTGTTAGATGATGAGAATACCTTTGTGGCTTGGCCCTTGGCTGATTTCTTCAGTCTTCTTTCAAAACACAGTGATACTGCATGAGATATGGTTTCTCAAAAAGTTATCTGATTTGTCTTTATTATTGATTTGCAATAAAATTGTACTTAGAAACCGAAATTCAATCGTGCATTAAGCTTAAGTAAAAGACTTTGAGAATTTAGTTTCATTGTTTCCTTAAAGAAATCATCCACATACTCAGAAGTTTCCCCCTCTTGTTCTGAG

mRNA sequence

CGACAACCAAATAATCGATCGCCCAAGCTCCGAAGTCTGTAAGGTTCTCGCCGGAGAAGTGCCGACCTCGCCGTCAACCATTTTTTAGTTGAACTTTGGTGCTGTTTCGCATAAGTGAATCAGTTCATTCAATCGAGGGATCGATATGGGAAGCAAAGAAAATGTTAAACATCTTGAGGACTGCTCAGTTTCAAATGCGTTGGGAACTTGGGTATTCTCAGTAGCTGGAGCCTTGCTAGCAATTCCAGTGGGAATAAAGAGGAAGTCTCTGGCCCCCCTTGTGTTTTTTGGCACAACTGGTACAATGCTTGACATTATAATGGGAATTACTAACTGCGAAAGGGAACACGCCGAGCGTCAAATGAAGCTATTAGAAGCACAAAACTCTGCAGCCGAAGCTTCTGTTGCCAAAACCGAGTCCCTTTCTTGATATCGCGTTTACATGTTTATTTCACTCGGTCATGTCGTGCCTACCGACCTTTTCTCCCCCAACCGTGTTAGATGATGAGAATACCTTTGTGGCTTGGCCCTTGGCTGATTTCTTCAGTCTTCTTTCAAAACACAGTGATACTGCATGAGATATGGTTTCTCAAAAAGTTATCTGATTTGTCTTTATTATTGATTTGCAATAAAATTGTACTTAGAAACCGAAATTCAATCGTGCATTAAGCTTAAGTAAAAGACTTTGAGAATTTAGTTTCATTGTTTCCTTAAAGAAATCATCCACATACTCAGAAGTTTCCCCCTCTTGTTCTGAG

Coding sequence (CDS)

ATGGGAAGCAAAGAAAATGTTAAACATCTTGAGGACTGCTCAGTTTCAAATGCGTTGGGAACTTGGGTATTCTCAGTAGCTGGAGCCTTGCTAGCAATTCCAGTGGGAATAAAGAGGAAGTCTCTGGCCCCCCTTGTGTTTTTTGGCACAACTGGTACAATGCTTGACATTATAATGGGAATTACTAACTGCGAAAGGGAACACGCCGAGCGTCAAATGAAGCTATTAGAAGCACAAAACTCTGCAGCCGAAGCTTCTGTTGCCAAAACCGAGTCCCTTTCTTGA

Protein sequence

MGSKENVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMGITNCEREHAERQMKLLEAQNSAAEASVAKTESLS

Homology

[Close]

BLAST of Sed0016516.1 vs. NCBI nr
Match: KAG6591905.1 (hypothetical protein SDJN03_14251, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024778.1 hypothetical protein SDJN02_13596, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.8 bits (421), Expect = 9.1e-38
Identity = 86/94 (91.49%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MGSKENVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGS+E VKHLE+CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ITNCEREHAERQMKLLEAQNSAAEASVAKTESLS 95
          I+ CEREHAERQMKLLEAQNSAAEASV ++ESLS
Sbjct: 61 ISACEREHAERQMKLLEAQNSAAEASVNQSESLS 94

[Close]

BLAST of Sed0016516.1 vs. NCBI nr
Match: XP_022937150.1 (uncharacterized protein LOC111443534 [Cucurbita moschata] >XP_023536610.1 uncharacterized protein LOC111797732 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.8 bits (421), Expect = 9.1e-38
Identity = 86/94 (91.49%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MGSKENVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGS+E VKHLE+CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ITNCEREHAERQMKLLEAQNSAAEASVAKTESLS 95
          I+ CEREHAERQMKLLEAQNSAAEASV ++ESLS
Sbjct: 61 ISACEREHAERQMKLLEAQNSAAEASVNESESLS 94

[Close]

BLAST of Sed0016516.1 vs. NCBI nr
Match: XP_022976612.1 (uncharacterized protein LOC111476955 [Cucurbita maxima])

HSP 1 Score: 166.4 bits (420), Expect = 1.2e-37
Identity = 85/94 (90.43%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MGSKENVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGS+E VKHLE+CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ITNCEREHAERQMKLLEAQNSAAEASVAKTESLS 95
          ++ CEREHAERQMKLLEAQNSAAEASV ++ESLS
Sbjct: 61 VSACEREHAERQMKLLEAQNSAAEASVNESESLS 94

[Close]

BLAST of Sed0016516.1 vs. NCBI nr
Match: XP_022138625.1 (uncharacterized protein LOC111009737 [Momordica charantia])

HSP 1 Score: 166.0 bits (419), Expect = 1.6e-37
Identity = 86/94 (91.49%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MGSKENVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGS ENVKHLE+CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSHENVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ITNCEREHAERQMKLLEAQNSAAEASVAKTESLS 95
          I+ CEREHAERQMKLLEAQNSAA+ASVA +ES S
Sbjct: 61 ISACEREHAERQMKLLEAQNSAADASVADSESHS 94

[Close]

BLAST of Sed0016516.1 vs. NCBI nr
Match: XP_027941423.1 (uncharacterized protein LOC114195226 [Vigna unguiculata] >QCE00356.1 hypothetical protein DEO72_LG7g1646 [Vigna unguiculata])

HSP 1 Score: 166.0 bits (419), Expect = 1.6e-37
Identity = 83/91 (91.21%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MGSKENVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGS++NVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSEDNVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ITNCEREHAERQMKLLEAQNSAAEASVAKTE 92
          IT CEREHAERQMKLLEAQN+AAE+S+ +TE
Sbjct: 61 ITACEREHAERQMKLLEAQNAAAESSLGETE 91

[Close]

BLAST of Sed0016516.1 vs. ExPASy TrEMBL
Match: A0A6J1FFR1 (uncharacterized protein LOC111443534 OS=Cucurbita moschata OX=3662 GN=LOC111443534 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.4e-38
Identity = 86/94 (91.49%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MGSKENVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGS+E VKHLE+CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ITNCEREHAERQMKLLEAQNSAAEASVAKTESLS 95
          I+ CEREHAERQMKLLEAQNSAAEASV ++ESLS
Sbjct: 61 ISACEREHAERQMKLLEAQNSAAEASVNESESLS 94

[Close]

BLAST of Sed0016516.1 vs. ExPASy TrEMBL
Match: A0A6J1IG79 (uncharacterized protein LOC111476955 OS=Cucurbita maxima OX=3661 GN=LOC111476955 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.8e-38
Identity = 85/94 (90.43%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MGSKENVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGS+E VKHLE+CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSQEQVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ITNCEREHAERQMKLLEAQNSAAEASVAKTESLS 95
          ++ CEREHAERQMKLLEAQNSAAEASV ++ESLS
Sbjct: 61 VSACEREHAERQMKLLEAQNSAAEASVNESESLS 94

[Close]

BLAST of Sed0016516.1 vs. ExPASy TrEMBL
Match: A0A6J1C9Z5 (uncharacterized protein LOC111009737 OS=Momordica charantia OX=3673 GN=LOC111009737 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.5e-38
Identity = 86/94 (91.49%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1  MGSKENVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGS ENVKHLE+CSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSHENVKHLEECSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ITNCEREHAERQMKLLEAQNSAAEASVAKTESLS 95
          I+ CEREHAERQMKLLEAQNSAA+ASVA +ES S
Sbjct: 61 ISACEREHAERQMKLLEAQNSAADASVADSESHS 94

[Close]

BLAST of Sed0016516.1 vs. ExPASy TrEMBL
Match: A0A4D6MG51 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG7g1646 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.5e-38
Identity = 83/91 (91.21%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MGSKENVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGS++NVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSEDNVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ITNCEREHAERQMKLLEAQNSAAEASVAKTE 92
          IT CEREHAERQMKLLEAQN+AAE+S+ +TE
Sbjct: 61 ITACEREHAERQMKLLEAQNAAAESSLGETE 91

[Close]

BLAST of Sed0016516.1 vs. ExPASy TrEMBL
Match: A0A0S3RN86 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G201800 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 9.8e-38
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 1  MGSKENVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGS++NVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG
Sbjct: 1  MGSEDNVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60

Query: 61 ITNCEREHAERQMKLLEAQNSAAEASVAKTE 92
          IT CEREHAERQMKLLEAQN+AAE S+ +TE
Sbjct: 61 ITACEREHAERQMKLLEAQNAAAETSLGETE 91

[Close]

BLAST of Sed0016516.1 vs. TAIR 10
Match: AT1G21930.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42150.3); Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 139.8 bits (351), Expect = 1.1e-33
Identity = 70/95 (73.68%), Postives = 82/95 (86.32%), Query Frame = 0


Query: 1  MGSKENVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGS+ENVKHLE+C+VSNALGTWVFSV GAL+AIPVGIKRKSL PLVFFGTTGTMLDII+G
Sbjct: 1  MGSQENVKHLEECTVSNALGTWVFSVLGALVAIPVGIKRKSLGPLVFFGTTGTMLDIIIG 60

Query: 61 ITNCEREHAERQMKLL-EAQNSAAEASVAKTESLS 95
          ++ CEREHAE QMKLL ++QN+    +  +TE  S
Sbjct: 61 VSQCEREHAEHQMKLLQDSQNATTTTTNTETEESS 95

[Close]

BLAST of Sed0016516.1 vs. TAIR 10
Match: AT3G42150.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21930.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 136.7 bits (343), Expect = 9.4e-33
Identity = 67/93 (72.04%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 1  MGSKENVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGS++NVKHLE+C+VSNALGTWVFSV GAL+AIPVGIKRKSL PLVFFGTTGTMLDII+G
Sbjct: 1  MGSQKNVKHLEECTVSNALGTWVFSVLGALVAIPVGIKRKSLGPLVFFGTTGTMLDIIIG 60

Query: 61 ITNCEREHAERQMKLL-EAQNSAAEASVAKTES 93
          ++ CEREHAE Q KLL ++QN+    +   TE+
Sbjct: 61 VSQCEREHAEHQTKLLQDSQNATTTTTTTNTET 93

[Close]

BLAST of Sed0016516.1 vs. TAIR 10
Match: AT3G42150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21930.1); Has 42 Blast hits to 42 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 136.7 bits (343), Expect = 9.4e-33
Identity = 67/93 (72.04%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 1  MGSKENVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGS++NVKHLE+C+VSNALGTWVFSV GAL+AIPVGIKRKSL PLVFFGTTGTMLDII+G
Sbjct: 1  MGSQKNVKHLEECTVSNALGTWVFSVLGALVAIPVGIKRKSLGPLVFFGTTGTMLDIIIG 60

Query: 61 ITNCEREHAERQMKLL-EAQNSAAEASVAKTES 93
          ++ CEREHAE Q KLL ++QN+    +   TE+
Sbjct: 61 VSQCEREHAEHQTKLLQDSQNATTTTTTTNTET 93

[Close]

BLAST of Sed0016516.1 vs. TAIR 10
Match: AT3G42150.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21930.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 136.7 bits (343), Expect = 9.4e-33
Identity = 67/93 (72.04%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 1  MGSKENVKHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 60
          MGS++NVKHLE+C+VSNALGTWVFSV GAL+AIPVGIKRKSL PLVFFGTTGTMLDII+G
Sbjct: 1  MGSQKNVKHLEECTVSNALGTWVFSVLGALVAIPVGIKRKSLGPLVFFGTTGTMLDIIIG 60

Query: 61 ITNCEREHAERQMKLL-EAQNSAAEASVAKTES 93
          ++ CEREHAE Q KLL ++QN+    +   TE+
Sbjct: 61 VSQCEREHAEHQTKLLQDSQNATTTTTTTNTET 93

The following BLAST results are available for this feature:

BLAST of Sed0016516.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591905.1	9.1e-38	91.49	hypothetical protein SDJN03_14251, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022937150.1	9.1e-38	91.49	uncharacterized protein LOC111443534 [Cucurbita moschata] >XP_023536610.1 unchar...	[more]
XP_022976612.1	1.2e-37	90.43	uncharacterized protein LOC111476955 [Cucurbita maxima]	[more]
XP_022138625.1	1.6e-37	91.49	uncharacterized protein LOC111009737 [Momordica charantia]	[more]
XP_027941423.1	1.6e-37	91.21	uncharacterized protein LOC114195226 [Vigna unguiculata] >QCE00356.1 hypothetica...	[more]

BLAST of Sed0016516.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0016516.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FFR1	4.4e-38	91.49	uncharacterized protein LOC111443534 OS=Cucurbita moschata OX=3662 GN=LOC1114435...	[more]
A0A6J1IG79	5.8e-38	90.43	uncharacterized protein LOC111476955 OS=Cucurbita maxima OX=3661 GN=LOC111476955...	[more]
A0A6J1C9Z5	7.5e-38	91.49	uncharacterized protein LOC111009737 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A4D6MG51	7.5e-38	91.21	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG7g1646 PE=4 SV=1	[more]
A0A0S3RN86	9.8e-38	91.21	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G...	[more]

BLAST of Sed0016516.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21930.1	1.1e-33	73.68	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G42150.2	9.4e-33	72.04	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G42150.1	9.4e-33	72.04	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G42150.3	9.4e-33	72.04	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 59..93
None	No IPR available	PANTHER	PTHR35691	EXPRESSED PROTEIN	coord: 1..90
None	No IPR available	PANTHER	PTHR35691:SF1	EXPRESSED PROTEIN	coord: 1..90

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0016516	Sed0016516	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016516.1-five_prime_utr	Sed0016516.1-five_prime_utr-LG05:36124942..36125029	five_prime_UTR
Sed0016516.1-five_prime_utr	Sed0016516.1-five_prime_utr-LG05:36127868..36127924	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016516.1-exon	Sed0016516.1-exon-LG05:36124942..36125029	exon
Sed0016516.1-exon	Sed0016516.1-exon-LG05:36127868..36127974	exon
Sed0016516.1-exon	Sed0016516.1-exon-LG05:36128850..36129412	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016516.1-cds	Sed0016516.1-cds-LG05:36127925..36127974	CDS
Sed0016516.1-cds	Sed0016516.1-cds-LG05:36128850..36129084	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016516.1-three_prime_utr	Sed0016516.1-three_prime_utr-LG05:36129085..36129412	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0016516.1	Sed0016516.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane