Sed0016248.1 (mRNA) Chayote v1

Overview


Name	Sed0016248.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	arabinogalactan peptide 23-like
Location	LG09: 37874039 .. 37874230 (+)
Sequence length	192
RNA-Seq Expression	Sed0016248.1
Synteny	Sed0016248.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGAAGAAGTTTGCTTGTGCCGCCCTCCTCGCCGCCGCTACCGTCTCTGCGGTCGTGGCCTCCGATGAGTCTCTCTCCCCGGCTGCTGCACCGGGGCCGAGCAGCGCCGCCTCCGCTGCTCTTCCCGCTCTTGGATCGCTCGTCGGCGCCTCGCTTGTTTCCTTCGTTGCATACTTCTTGAACTGA

mRNA sequence

ATGGAAATGAAGAAGTTTGCTTGTGCCGCCCTCCTCGCCGCCGCTACCGTCTCTGCGGTCGTGGCCTCCGATGAGTCTCTCTCCCCGGCTGCTGCACCGGGGCCGAGCAGCGCCGCCTCCGCTGCTCTTCCCGCTCTTGGATCGCTCGTCGGCGCCTCGCTTGTTTCCTTCGTTGCATACTTCTTGAACTGA

Coding sequence (CDS)

ATGGAAATGAAGAAGTTTGCTTGTGCCGCCCTCCTCGCCGCCGCTACCGTCTCTGCGGTCGTGGCCTCCGATGAGTCTCTCTCCCCGGCTGCTGCACCGGGGCCGAGCAGCGCCGCCTCCGCTGCTCTTCCCGCTCTTGGATCGCTCGTCGGCGCCTCGCTTGTTTCCTTCGTTGCATACTTCTTGAACTGA

Protein sequence

MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAYFLN

Homology

[Close]

BLAST of Sed0016248.1 vs. NCBI nr
Match: XP_023004714.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-16
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          MEMKK ACAAL AAATV+AVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

Query: 61 FLN 64
          + N
Sbjct: 61 YFN 63

[Close]

BLAST of Sed0016248.1 vs. NCBI nr
Match: KAG7025661.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.7 bits (234), Expect = 3.0e-16
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          MEMKK ACAAL AAATV+AVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA+
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 FLN 64
          + N
Sbjct: 61 YFN 63

[Close]

BLAST of Sed0016248.1 vs. NCBI nr
Match: XP_022960230.1 (arabinogalactan peptide 23-like [Cucurbita moschata])

HSP 1 Score: 93.6 bits (231), Expect = 6.6e-16
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          MEMKK ACAAL AAAT++AVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA+
Sbjct: 1  MEMKKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 FLN 64
          + N
Sbjct: 61 YFN 63

[Close]

BLAST of Sed0016248.1 vs. NCBI nr
Match: XP_038899473.1 (arabinogalactan protein 23-like [Benincasa hispida])

HSP 1 Score: 93.2 bits (230), Expect = 8.6e-16
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 1  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          MEMKK ACAAL AAA VS+ VA+DESLSPAAAPGPSSAASAALPALGSLVGASLV+FVAY
Sbjct: 1  MEMKKIACAALFAAAAVSSAVAADESLSPAAAPGPSSAASAALPALGSLVGASLVTFVAY 60

Query: 61 FLN 64
          FLN
Sbjct: 61 FLN 63

[Close]

BLAST of Sed0016248.1 vs. NCBI nr
Match: XP_022933008.1 (arabinogalactan peptide 23-like [Cucurbita moschata] >KAG7025100.1 Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-15
Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          MEMKK ACAAL AAATV+AVVASDESLSPAAAPGPSSAASA LPALGSLVGASLVS VAY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSLVAY 60

Query: 61 FLN 64
          + N
Sbjct: 61 YFN 63

[Close]

BLAST of Sed0016248.1 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-10
Identity = 42/63 (66.67%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          MEMKK AC  L AAA+++AV+A++E  +P  APGP+SAASAALPALGSLVGASLVS  +Y
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 FLN 64
          +L+
Sbjct: 61 YLH 61

[Close]

BLAST of Sed0016248.1 vs. ExPASy TrEMBL
Match: A0A6J1KX42 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.9e-17
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          MEMKK ACAAL AAATV+AVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

Query: 61 FLN 64
          + N
Sbjct: 61 YFN 63

[Close]

BLAST of Sed0016248.1 vs. ExPASy TrEMBL
Match: A0A6J1H8I1 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.2e-16
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          MEMKK ACAAL AAAT++AVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVA+
Sbjct: 1  MEMKKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 FLN 64
          + N
Sbjct: 61 YFN 63

[Close]

BLAST of Sed0016248.1 vs. ExPASy TrEMBL
Match: A0A6J1F3F5 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.1e-16
Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          MEMKK ACAAL AAATV+AVVASDESLSPAAAPGPSSAASA LPALGSLVGASLVS VAY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSLVAY 60

Query: 61 FLN 64
          + N
Sbjct: 61 YFN 63

[Close]

BLAST of Sed0016248.1 vs. ExPASy TrEMBL
Match: A0A6J1IYE9 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.1e-14
Identity = 53/63 (84.13%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          MEMK  AC AL  AA V+AVVASDES SPAAAPGPSSAASAALPALGSL+GASLVSFVAY
Sbjct: 1  MEMKNIACTALFTAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

Query: 61 FLN 64
           LN
Sbjct: 61 VLN 63

[Close]

BLAST of Sed0016248.1 vs. ExPASy TrEMBL
Match: A0A1S3CDX5 (arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.0e-11
Identity = 51/64 (79.69%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 1  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFV-A 60
          MEMKK ACAAL AAA VSA VA+DES+SPAAAPGPSSAASAALP L    GAS+VSFV A
Sbjct: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVL----GASVVSFVAA 60

Query: 61 YFLN 64
          YFLN
Sbjct: 61 YFLN 60

[Close]

BLAST of Sed0016248.1 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 66.2 bits (160), Expect = 1.0e-11
Identity = 42/63 (66.67%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60
          MEMKK AC  L AAA+++AV+A++E  +P  APGP+SAASAALPALGSLVGASLVS  +Y
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 FLN 64
          +L+
Sbjct: 61 YLH 61

[Close]

BLAST of Sed0016248.1 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-08
Identity = 39/64 (60.94%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 1  MEMKKFACAALLAAATVSAVVASDESLSPAAAPGP-SSAASAALPALGSLVGASLVSFVA 60
          MEMKK AC  + AAA+++AV+A++     A APGP +S AS A+PALGSLVGASLVS  A
Sbjct: 1  MEMKKIACGVVFAAASMTAVMAAEVG---APAPGPAASGASVAVPALGSLVGASLVSLFA 60

Query: 61 YFLN 64
          Y+LN
Sbjct: 61 YYLN 61

The following BLAST results are available for this feature:

BLAST of Sed0016248.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023004714.1	1.0e-16	92.06	arabinogalactan peptide 23-like [Cucurbita maxima]	[more]
KAG7025661.1	3.0e-16	90.48	Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022960230.1	6.6e-16	88.89	arabinogalactan peptide 23-like [Cucurbita moschata]	[more]
XP_038899473.1	8.6e-16	88.89	arabinogalactan protein 23-like [Benincasa hispida]	[more]
XP_022933008.1	1.5e-15	88.89	arabinogalactan peptide 23-like [Cucurbita moschata] >KAG7025100.1 Arabinogalact...	[more]

BLAST of Sed0016248.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S2W4	1.5e-10	66.67	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of Sed0016248.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KX42	4.9e-17	92.06	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4...	[more]
A0A6J1H8I1	3.2e-16	88.89	arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE...	[more]
A0A6J1F3F5	7.1e-16	88.89	arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE...	[more]
A0A6J1IYE9	5.1e-14	84.13	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4...	[more]
A0A1S3CDX5	9.0e-11	79.69	arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=...	[more]

BLAST of Sed0016248.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57690.1	1.0e-11	66.67	arabinogalactan protein 23	[more]
AT2G41905.1	1.1e-08	60.94	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044702	Arabinogalactan protein 23/40	PANTHER	PTHR34672	POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102	coord: 1..62
None	No IPR available	PANTHER	PTHR34672:SF2	ARABINOGALACTAN PROTEIN 23	coord: 1..62

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0016248	Sed0016248	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016248.1-exon	Sed0016248.1-exon-LG09:37874039..37874230	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016248.1-cds	Sed0016248.1-cds-LG09:37874039..37874230	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0016248.1	Sed0016248.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane