Sed0016024.1 (mRNA) Chayote v1

Overview


Name	Sed0016024.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	40S ribosomal protein S15a
Location	LG01: 7770506 .. 7772556 (+)
Sequence length	959
RNA-Seq Expression	Sed0016024.1
Synteny	Sed0016024.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGTTTGTGTCTTCCAGAATTTATAAACATTCTCAAACCCTAAAAATCTCTCTCATATTTCTCACACTTCGCTGACGGACGCCTCCTTCTTCGATCCAGGTACTTCTCTCTCAGATCGATCTCTGTTCTTCATTTATGTGATTCTGCGCCTCTTTATCAGTATCCATTTGATTGTTGAATACGGAATTTTGATGCAATTAGCTTTAGATTTTGGCCGTGGCTGTGATTTATTACTCGAATTTGAATCTGTTTTTGGATGCAGTAATCGGGCCTATGTTCTAATGTTTTTGTGGTATAATTTCTCACCTTTTGTTTTGTTTCTTTCTCTGAAGCTTTGATTTGGAAGGATGGTTAGAGTCAGTGTTTTGAACGATGCTCTTAAGAGCATGTACAATGCAGAGAAGAGGGGGAAACGACAGGTCATGATCAGGCCTTCCTCTAAAGTCATCATCAAGTTTCTTAATGTTATGCAGAAGCATGGTTTGATTGCTTTCTTCATATCTCTTTGATTTGACTTTGTGGCAGCATTTCCTCTCATGCTCATTTTATTTTGATTTATAGGTTATATTGGGGAATTTGAGTATGTTGACGATCATCGATCTGGGAAAATTGTTGTTGAACTCAACGGTAGACTGAACAAGTGTGGAGTTATTAGTCCTCGTTTTGATGTGGGTGTTAAGGAGATTGAAGGCTGGACTGCTCGGCTGCTCCCTTCCAGACAGGTTAGTTTTCCTAACCTTTTGATTTTGCATAATTTGATGCTGAAAGTTGAAGTTCAAATTTAGTGGTGATGAAATTTTACTAATGTGGTTGGATGGAGAAGTTAGTGATTGTAAAATCATGTTATCTCTTGGGTTTTTTTTATGACTCGGGAACTTGGAGTTTTGCTCCTCAAAACCTTGGGGCAACTATGCCTTTTCCTCGGTCAGGCATTAGAGATAATGTGGGAAAAAGAGGTGACATTTGGGATCGGCTAGGAAATTAATCCTGCCTTGTACTTGGAACCTCAAGGGGATTACACCTGGGTGCCGCTCTTAGGGGACCATGTTGTCTCTTAGATAATCTTTAATGATAAATTAGGCAACTTTGATGATAAATTATGCATCTTGCATATATAAGTAATGCAAAATATGATATGAGTAAATTTCTAGTGGCCACAAAGCTTTTGATGGATTACTACTAACTGCGTTATTCTGAGTTTGGACTCTGGGCTTGGACTACACTACAGCTTGTTTATTATGTTTTGTCCTCAATGGGTGACTTGGAGATTGAAGACTTGGGTTTTGAAGGTTTTTTTCCTTTAAGGTCTCAAGTTTGAGGTTAACCTATCACATTAGTTTGTTGACACCATCAGCACCTAAGTCTCCATCCATCCCCTTGATGTCTCTTGATGCCTTGTCTAGGGACAGGCATGGTTATCTCGGGCATAGAGAGACTTGTTGCATAACATTGTAGTCAAGTTGGTTGTACTCATCTTATTTATAAAATTCATATCTGCAGTTTGGATTTATTGTGCTGACAACATCTGCCGGAATCATGGATCATGAAGAGGCTAGAAGGAAGAATGTTGGAGGGAAAGTTCTTGGTTTCTTCTATTGAACATGGTTTGGAGCTTCCATTATGGAATTTTGATATAGCTTTCAATAGTACTACATTTTGTCGGTAAAGATAAAGCTTATATCCCTTAATGATTAGATTGTGTTCCCAGTTTCTCAAGTTAATTTCAAGATTTTTTTTTATTGTTTTGGTCAAGACATTTTGGTTTTTAATTATATTGGAAGAGAACTAGTGTTTTTAAATTCTGTTCAGTTTCTTGCATTGGTACCCAACATTTTGTCCTCAGTTCTGAAGTTCAATCACAAGTATTTTGAGCATGCTGGTTTTAAATCTATGGCGTAAAAAAAAATTATATGCATGTGAATGATTCGATTCGTGCTAGTGAACTTGGTGATGTCTATCAAGGAGTTTGGTCAAGTTATGTTTTTGTTGCATAATTGAATAAAAGAGGGTCTTGGGGTGCATAAGGTGATGGGTTCAATTCCTATGGTGG

mRNA sequence

AGGGTTTGTGTCTTCCAGAATTTATAAACATTCTCAAACCCTAAAAATCTCTCTCATATTTCTCACACTTCGCTGACGGACGCCTCCTTCTTCGATCCAGCTTTGATTTGGAAGGATGGTTAGAGTCAGTGTTTTGAACGATGCTCTTAAGAGCATGTACAATGCAGAGAAGAGGGGGAAACGACAGGTCATGATCAGGCCTTCCTCTAAAGTCATCATCAAGTTTCTTAATGTTATGCAGAAGCATGGTTATATTGGGGAATTTGAGTATGTTGACGATCATCGATCTGGGAAAATTGTTGTTGAACTCAACGGTAGACTGAACAAGTGTGGAGTTATTAGTCCTCGTTTTGATGTGGGTGTTAAGGAGATTGAAGGCTGGACTGCTCGGCTGCTCCCTTCCAGACAGTTTGGATTTATTGTGCTGACAACATCTGCCGGAATCATGGATCATGAAGAGGCTAGAAGGAAGAATGTTGGAGGGAAAGTTCTTGGTTTCTTCTATTGAACATGGTTTGGAGCTTCCATTATGGAATTTTGATATAGCTTTCAATAGTACTACATTTTGTCGGTAAAGATAAAGCTTATATCCCTTAATGATTAGATTGTGTTCCCAGTTTCTCAAGTTAATTTCAAGATTTTTTTTTATTGTTTTGGTCAAGACATTTTGGTTTTTAATTATATTGGAAGAGAACTAGTGTTTTTAAATTCTGTTCAGTTTCTTGCATTGGTACCCAACATTTTGTCCTCAGTTCTGAAGTTCAATCACAAGTATTTTGAGCATGCTGGTTTTAAATCTATGGCGTAAAAAAAAATTATATGCATGTGAATGATTCGATTCGTGCTAGTGAACTTGGTGATGTCTATCAAGGAGTTTGGTCAAGTTATGTTTTTGTTGCATAATTGAATAAAAGAGGGTCTTGGGGTGCATAAGGTGATGGGTTCAATTCCTATGGTGG

Coding sequence (CDS)

ATGGTTAGAGTCAGTGTTTTGAACGATGCTCTTAAGAGCATGTACAATGCAGAGAAGAGGGGGAAACGACAGGTCATGATCAGGCCTTCCTCTAAAGTCATCATCAAGTTTCTTAATGTTATGCAGAAGCATGGTTATATTGGGGAATTTGAGTATGTTGACGATCATCGATCTGGGAAAATTGTTGTTGAACTCAACGGTAGACTGAACAAGTGTGGAGTTATTAGTCCTCGTTTTGATGTGGGTGTTAAGGAGATTGAAGGCTGGACTGCTCGGCTGCTCCCTTCCAGACAGTTTGGATTTATTGTGCTGACAACATCTGCCGGAATCATGGATCATGAAGAGGCTAGAAGGAAGAATGTTGGAGGGAAAGTTCTTGGTTTCTTCTATTGA

Protein sequence

MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY

Homology

[Close]

BLAST of Sed0016024.1 vs. NCBI nr
Match: XP_022990484.1 (40S ribosomal protein S15a-1 [Cucurbita maxima])

HSP 1 Score: 266.5 bits (680), Expect = 1.2e-67
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Sed0016024.1 vs. NCBI nr
Match: XP_022922996.1 (40S ribosomal protein S15a-1 [Cucurbita moschata] >XP_023534803.1 40S ribosomal protein S15a-1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.2 bits (679), Expect = 1.5e-67
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFD+GVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Sed0016024.1 vs. NCBI nr
Match: XP_022134546.1 (40S ribosomal protein S15a-1 [Momordica charantia] >XP_022143687.1 40S ribosomal protein S15a-1 [Momordica charantia] >XP_022938588.1 40S ribosomal protein S15a-1 [Cucurbita moschata] >XP_022938589.1 40S ribosomal protein S15a-1 [Cucurbita moschata] >XP_022993711.1 40S ribosomal protein S15a-1 [Cucurbita maxima] >XP_023549602.1 40S ribosomal protein S15a-1 [Cucurbita pepo subsp. pepo] >KAG7016248.1 40S ribosomal protein S15a-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 263.1 bits (671), Expect = 1.3e-66
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Sed0016024.1 vs. NCBI nr
Match: XP_022949003.1 (40S ribosomal protein S15a-1-like [Cucurbita moschata] >XP_022965015.1 40S ribosomal protein S15a-1-like [Cucurbita moschata] >XP_022965016.1 40S ribosomal protein S15a-1-like [Cucurbita moschata] >XP_022970479.1 40S ribosomal protein S15a-1-like [Cucurbita maxima] >XP_022970480.1 40S ribosomal protein S15a-1-like [Cucurbita maxima] >XP_022997822.1 40S ribosomal protein S15a-1-like [Cucurbita maxima] >XP_023520313.1 40S ribosomal protein S15a-1-like [Cucurbita pepo subsp. pepo] >XP_023520314.1 40S ribosomal protein S15a-1-like [Cucurbita pepo subsp. pepo] >XP_023523191.1 40S ribosomal protein S15a-1-like [Cucurbita pepo subsp. pepo] >KAG7019221.1 40S ribosomal protein S15a-1, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG7036895.1 40S ribosomal protein S15a-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 263.1 bits (671), Expect = 1.3e-66
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Sed0016024.1 vs. NCBI nr
Match: XP_013457334.1 (40S ribosomal protein S15a-1 [Medicago truncatula] >XP_013469871.1 40S ribosomal protein S15a-1 [Medicago truncatula] >AFK33558.1 unknown [Medicago truncatula] >AFK40580.1 unknown [Medicago truncatula] >KEH31365.1 ribosomal protein S8 [Medicago truncatula] >KEH43909.1 ribosomal protein S8 [Medicago truncatula] >RHN62853.1 putative ribosomal protein S8 [Medicago truncatula])

HSP 1 Score: 262.3 bits (669), Expect = 2.2e-66
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Sed0016024.1 vs. ExPASy Swiss-Prot
Match: P42798 (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 261.5 bits (667), Expect = 4.9e-69
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Sed0016024.1 vs. ExPASy Swiss-Prot
Match: Q9LX88 (40S ribosomal protein S15a-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15AD PE=2 SV=3)

HSP 1 Score: 261.2 bits (666), Expect = 6.4e-69
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLND LKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Sed0016024.1 vs. ExPASy Swiss-Prot
Match: Q00332 (40S ribosomal protein S15a OS=Brassica napus OX=3708 GN=RPS15A PE=2 SV=3)

HSP 1 Score: 260.0 bits (663), Expect = 1.4e-68
Identity = 126/130 (96.92%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSM+NAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Sed0016024.1 vs. ExPASy Swiss-Prot
Match: Q9AT34 (40S ribosomal protein S15a OS=Daucus carota OX=4039 GN=RPS15A PE=2 SV=3)

HSP 1 Score: 257.3 bits (656), Expect = 9.3e-68
Identity = 125/130 (96.15%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSM+NAEKRGKRQVMIRPSSKV+IKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIE WTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Sed0016024.1 vs. ExPASy Swiss-Prot
Match: O80646 (40S ribosomal protein S15a-3 OS=Arabidopsis thaliana OX=3702 GN=RPS15AC PE=2 SV=2)

HSP 1 Score: 246.1 bits (627), Expect = 2.1e-64
Identity = 118/130 (90.77%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVR SVLND LKSM NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFEYVDDHRSGK
Sbjct: 1   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQFG+IVLTTSAGIMDHEEAR+KN
Sbjct: 61  IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Sed0016024.1 vs. ExPASy TrEMBL
Match: A0A6J1JS60 (40S ribosomal protein S15a-1 OS=Cucurbita maxima OX=3661 GN=LOC111487333 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 5.7e-68
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Sed0016024.1 vs. ExPASy TrEMBL
Match: A0A6J1E5M9 (40S ribosomal protein S15a-1 OS=Cucurbita moschata OX=3662 GN=LOC111430810 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 7.4e-68
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFD+GVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDIGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Sed0016024.1 vs. ExPASy TrEMBL
Match: A0A6J1I5M1 (40S ribosomal protein S15a-1-like OS=Cucurbita maxima OX=3661 GN=LOC111469448 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 6.3e-67
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Sed0016024.1 vs. ExPASy TrEMBL
Match: A0A6J1BY30 (40S ribosomal protein S15a-1 OS=Momordica charantia OX=3673 GN=LOC111006763 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 6.3e-67
Identity = 129/130 (99.23%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Sed0016024.1 vs. ExPASy TrEMBL
Match: A0A6J1GAW0 (40S ribosomal protein S15a-1-like OS=Cucurbita moschata OX=3662 GN=LOC111452473 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 6.3e-67
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Sed0016024.1 vs. TAIR 10
Match: AT1G07770.1 (ribosomal protein S15A )

HSP 1 Score: 261.5 bits (667), Expect = 3.5e-70
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Sed0016024.1 vs. TAIR 10
Match: AT1G07770.2 (ribosomal protein S15A )

HSP 1 Score: 261.5 bits (667), Expect = 3.5e-70
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Sed0016024.1 vs. TAIR 10
Match: AT5G59850.1 (Ribosomal protein S8 family protein )

HSP 1 Score: 261.5 bits (667), Expect = 3.5e-70
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Sed0016024.1 vs. TAIR 10
Match: AT3G46040.1 (ribosomal protein S15A D )

HSP 1 Score: 261.2 bits (666), Expect = 4.6e-70
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVR+SVLND LKSMYNAEKRGKRQVMIRPSSKVIIKFL VMQKHGYIGEFEYVDDHRSGK
Sbjct: 1   MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGK 60

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN
Sbjct: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 121 VGGKVLGFFY 130

[Close]

BLAST of Sed0016024.1 vs. TAIR 10
Match: AT2G39590.1 (Ribosomal protein S8 family protein )

HSP 1 Score: 246.1 bits (627), Expect = 1.5e-65
Identity = 118/130 (90.77%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLNVMQKHGYIGEFEYVDDHRSGK 60
           MVR SVLND LKSM NAEK+GKRQVMIRPSSKVIIKFL VMQKHGYI EFEYVDDHRSGK
Sbjct: 7   MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGK 66

Query: 61  IVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKN 120
           IVVELNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQFG+IVLTTSAGIMDHEEAR+KN
Sbjct: 67  IVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKN 126

Query: 121 VGGKVLGFFY 131
           VGGKVLGFFY
Sbjct: 127 VGGKVLGFFY 136

The following BLAST results are available for this feature:

BLAST of Sed0016024.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022990484.1	1.2e-67	100.00	40S ribosomal protein S15a-1 [Cucurbita maxima]	[more]
XP_022922996.1	1.5e-67	99.23	40S ribosomal protein S15a-1 [Cucurbita moschata] >XP_023534803.1 40S ribosomal ...	[more]
XP_022134546.1	1.3e-66	99.23	40S ribosomal protein S15a-1 [Momordica charantia] >XP_022143687.1 40S ribosomal...	[more]
XP_022949003.1	1.3e-66	98.46	40S ribosomal protein S15a-1-like [Cucurbita moschata] >XP_022965015.1 40S ribos...	[more]
XP_013457334.1	2.2e-66	98.46	40S ribosomal protein S15a-1 [Medicago truncatula] >XP_013469871.1 40S ribosomal...	[more]

BLAST of Sed0016024.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42798	4.9e-69	97.69	40S ribosomal protein S15a-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15AA PE=2 SV=...	[more]
Q9LX88	6.4e-69	97.69	40S ribosomal protein S15a-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15AD PE=2 SV=...	[more]
Q00332	1.4e-68	96.92	40S ribosomal protein S15a OS=Brassica napus OX=3708 GN=RPS15A PE=2 SV=3	[more]
Q9AT34	9.3e-68	96.15	40S ribosomal protein S15a OS=Daucus carota OX=4039 GN=RPS15A PE=2 SV=3	[more]
O80646	2.1e-64	90.77	40S ribosomal protein S15a-3 OS=Arabidopsis thaliana OX=3702 GN=RPS15AC PE=2 SV=...	[more]

BLAST of Sed0016024.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JS60	5.7e-68	100.00	40S ribosomal protein S15a-1 OS=Cucurbita maxima OX=3661 GN=LOC111487333 PE=3 SV...	[more]
A0A6J1E5M9	7.4e-68	99.23	40S ribosomal protein S15a-1 OS=Cucurbita moschata OX=3662 GN=LOC111430810 PE=3 ...	[more]
A0A6J1I5M1	6.3e-67	98.46	40S ribosomal protein S15a-1-like OS=Cucurbita maxima OX=3661 GN=LOC111469448 PE...	[more]
A0A6J1BY30	6.3e-67	99.23	40S ribosomal protein S15a-1 OS=Momordica charantia OX=3673 GN=LOC111006763 PE=3...	[more]
A0A6J1GAW0	6.3e-67	98.46	40S ribosomal protein S15a-1-like OS=Cucurbita moschata OX=3662 GN=LOC111452473 ...	[more]

BLAST of Sed0016024.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07770.1	3.5e-70	97.69	ribosomal protein S15A	[more]
AT1G07770.2	3.5e-70	97.69	ribosomal protein S15A	[more]
AT5G59850.1	3.5e-70	97.69	Ribosomal protein S8 family protein	[more]
AT3G46040.1	4.6e-70	97.69	ribosomal protein S15A D	[more]
AT2G39590.1	1.5e-65	90.77	Ribosomal protein S8 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.1370.30		coord: 1..69 e-value: 1.1E-36 score: 126.5
None	No IPR available	GENE3D	3.30.1490.10		coord: 70..130 e-value: 1.2E-36 score: 126.1
None	No IPR available	PANTHER	PTHR11758:SF36	BNAA02G06730D PROTEIN	coord: 1..130
IPR000630	Ribosomal protein S8	PFAM	PF00410	Ribosomal_S8	coord: 7..130 e-value: 1.4E-22 score: 79.9
IPR000630	Ribosomal protein S8	PANTHER	PTHR11758	40S RIBOSOMAL PROTEIN S15A	coord: 1..130
IPR000630	Ribosomal protein S8	PROSITE	PS00053	RIBOSOMAL_S8	coord: 100..117
IPR000630	Ribosomal protein S8	HAMAP	MF_01302_A	Ribosomal_S8_A	coord: 2..130 score: 32.516315
IPR035987	Ribosomal protein S8 superfamily	SUPERFAMILY	56047	Ribosomal protein S8	coord: 4..130

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0016024	Sed0016024	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016024.1-five_prime_utr	Sed0016024.1-five_prime_utr-LG01:7770506..7770605	five_prime_UTR
Sed0016024.1-five_prime_utr	Sed0016024.1-five_prime_utr-LG01:7770839..7770853	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016024.1-exon	Sed0016024.1-exon-LG01:7770506..7770605	exon
Sed0016024.1-exon	Sed0016024.1-exon-LG01:7770839..7770986	exon
Sed0016024.1-exon	Sed0016024.1-exon-LG01:7771068..7771228	exon
Sed0016024.1-exon	Sed0016024.1-exon-LG01:7772007..7772556	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016024.1-cds	Sed0016024.1-cds-LG01:7770854..7770986	CDS
Sed0016024.1-cds	Sed0016024.1-cds-LG01:7771068..7771228	CDS
Sed0016024.1-cds	Sed0016024.1-cds-LG01:7772007..7772105	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0016024.1-three_prime_utr	Sed0016024.1-three_prime_utr-LG01:7772106..7772556	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0016024.1	Sed0016024.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome