Sed0015873.1 (mRNA) Chayote v1

Overview


Name	Sed0015873.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	sec-independent protein translocase protein TATA, chloroplastic
Location	LG06: 6715313 .. 6719541 (+)
Sequence length	351
RNA-Seq Expression	Sed0015873.1
Synteny	Sed0015873.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCTCTCATCTGCAACTTTACCCTTCACTTCCTCCATACCCAGACCTCCATTTTCGTCCTCCAAATCCGCCTTCTTCGCCAACAATGGCACTGCCAATTTCTTAACAAATTCCACCATACCCATTTTTCCCCACTTCGTAAGAACACCGATAAAGCTCACAAGGGTTTGACTTGTAACGCTCTGTTTGGCCTTGGAGTGCCTGAACTTGCTGCAATCACCGGTGTTGCGGCTCTGGTTTTTGGGCCCAAGAAGTTGCCTGAAATTGGGAGGAGTATTGGCAAAACTGTCAAGAGCTTCCAACAGGTATGTTTGTTTGTGGTTTCATGAATGGGTCTGTTTGGTTGCTTCGAAATTGTTTAATTTCTGGGGTTTTGATGTGGGGAAGTGTTTTTCATACTGAATTTGGGTGGTGTGGTATGAGCTGTGGATGTCTATATTTCTCGTGGCTTTTCTGATAATATGGGAATTTAGTATTTGATGATGGTTGAAAACCCAAAAGCTTAAACTCGTGGGTTGGAGTAAATTTAGTTATATAAATCAACACTCCCCTTATTTGTGGTTTAGAAATTTTATAAATGTCCTACGAGTGAAATTTACTTTTTAAATGGGAGGAAATGACGTGTGAGGGACTCATCTCTGATACCATGCTGAATTCAGTTGATTGGTGACTTTTATTGAATTGGGGATGGTTTTGAATTGTGCAAAGTAATTTTTGTCTAACTGGAAAACTTATCAACTTTGTCATGGGTCTCTTTAACAACATTAGTTTTGTATTAGATGAAGCTTTAGATTCGTGCCCTTTATGGAAGTATTCATAGAGAAATGCTTTGCTTATTGACTGTGCTCTATTGAAAGCCATCCTGTCCCAAGCATTAAAATGAAGAAATTAGTACTTCAGTTTATGATTCTGTATTTCTGGCTGGGCGACTGTGTTAAAGAAATTGACTTAAGCAGGAGGGAACTCAACACTCTTTCTTGAGAGCATGTCTACTCATGTTGATAAGAAAAGAAAAATGTTCTTGAAAATCTTAATGGCATGGATAGTTGTCTTACAACAACTCTAAGTTGATCTCCACATTGGGATGATATTGCTCACTTTTACCATAATTCTCATGGCTTTGTTTTTTTCTTCAACCAAATAGGTCTTGTACCATTAAAGATAATTGATGATCTTTCCCTTAACTGATTAATGTGAGACATTTTTGTTTGTATCCCAATAAGAAGTTAGAAGATCATACCCACCTGTTCTTTAATCGTAATCCTTCAGTTAGAAGGCTATGACTCCTTGTGTTGAAGAGTTCAATGAGGCGAGCGTCTTTTGTGTCCATCACGCACTCCTTCATCAACCATTCCTTTAAGCAGAAAGCAAATGTGTTTTGCGATTGTACTATGAAAGCCTGTATGTGGGAAATGTGTTTGGAAATGAATCTTTTGTATATTTCAAAATCTTTCAGAAAAGGGTGAGCTGTGAAATTTTGTTCAGTAACAAGTTCTTTTTGGAGTTATTTTTTCAATTTTTTTAACCATAGTTCTTTCTTCTTTTCATAGTCCTGTACCTGCTTTTCTGTTATCTCACCTTCAGTTGGGAGCTGATAACTCTTTTGCAAACCTTATTATTCTTCTTACCTTTTTTGAGGAAGTGTCGGGGTTAAAGATTAATCGAGGTAACTGCTAGGTGCTTGGTTTGAATTGTGAGTAGGATAAGTTGAATAGGTGGTCAGATTGGGAGGGTTGTACAATTGGAAATTTTCCTTTGACTTAGTTAGCTTCTTATAGGGGGTTGGTCGTTGTCTTGTCTTTTCTTTTTGGAAGCATGTTGTGGATAAGGTTTGTAAGAGGCTTTCTTTTAGGAAGAAATTCTTTTTATCGAAGGGGCTAAGCTAACCTTGTTAAGTCGGTGTTGAGCGGCATTCCAACCTATTTTCTTTTCTTAGTTATCATGTCTATCTCAGTTTGTGTAAGTGTTGAGAATTTTATGAGAGACTTTCTTTAGGAGAGCGTTGAAGAGGGGAAGGGAGCCTAAGAAGCTCGGGCACAGACACGCGGTATAAATACGATGCGGACATGGAGACACGTCATTATTCAGGACACGAATATGCCGGGAACACTGTCTATACTATTATTTTTTATGATATACTATTTAAAAGATCAAATCTAAAATATTTTTAGTTTTTTTACCATGAAAAATAATTAAAATAAAGATGAACATTAAAATTCAATTAACGTTTGAATTTAACCCACCTAATTAGTTATATGAGTTAATTTAAATTCAATAAAGAACAAACTTTTACCATTCTTTAAATGTCTACTAAAAGACCATAAAACAAACTTTATAAGTAATAAGCCTAACCTTTAACAATCTCAAAATATTTTAGTTTTTACCTCATTTTTCTCTCCCTTCTATTTTCTCTATTTCTTTTCCTTTTCCATTTAGTCCATTACCTTCAATGGACGTTGTTGTTGACTGGCTCCACCAACACTGTTGTGTCATCGACGAATTGAAATAAATAAGTCTTAAATGGTGTGTTTTGAACTGTCCAAAAAAAATTTTGAGTGTCAAACACATGTCCGAATAGTGTTCAAAATTATCTGTGTTGGACACTATCCAACACGGATACTTTTTGAAAATCAAAGTGTTCGTGCTCAATACTTCCTAGAACCCATACTTGATTAATTGGGGGGTGGTTTCTAAAAAGCTAAATCAAGGGGTCTTGGGTGAGGAACTTGAAAACTCGCAACACGAGAGATTGTTGCTTACAAAGGAAAAGGGAGTTAGTCTTATGACTACACTTTTTGGTTTGGAGCTGCTTTTTTCAGGCTTTCGGTTATCCTAAAGATTGAATATCTCTGATTAAGGAGTTCCTTTTTACCTTGTCCTTTGATGATAAAGGGCATTTTTTTGTGGCTCAAAGAGATTTTTTCAATTTTGTGGGGTTTTTTTGGGTCAAGAGGAACAATAAAACTTTTAGGAGTAAAGACCTAAGGTGGAGGTGTGGTCTCTTTTTAATTGCCCAAGTCTTATTTTGGTTGATTAGAATTCCTTGTTTTAGGTTAGCTCTTTTTGGTGTGGTCTATCTTTTTTTGTGTCCCTTATATTCTTTCAATTTTTCTAAATGAAAAAGTTTTTCCCAACATTAGAAAAAATAAGGTTTATTTTCCAGCATGGGTGGCGTAGCGATAGTAAAGTCCGTTTTCTTTACCTGGCCTATGTGCATGGAGCTGCTCCTTCATAAAGAACTTGATTTCAACCTCAACGAAAGTAGCAAGTGTCCACGCCCTCTTAACTTTTTAAGCCTTTTCACGTAGAAACATAAACAAGAACTGAAATTGTTGTTCTTTTCTATTGTTATGTTTAAAACAGGGTTCACCAAGGTTCTGGTTACATTAACTTTGTCTATATTTAGAAGCACAACTATCATGGATTGACTAGCCAAAGAGGACCTTGGAAATCTAATAAGCTACGAGTTCAATTCATACTCGATTATAATTTCCTATGCATTATCCTCACATCCAAATGTTATAGGGCTAGATAGTATGATCCATGAGAATCTTCGAAGTGAAAGTAAGCTGGTCGAGATACTCATAGATATAAAAAGTGAAGTGCCAAATGCATGTTTGTCACAGGTGAAAGTACTTTTTACTCCAAATAAATGATATATTATGTAGGAGACTAATTTAAGTTCTTATAGAAAAATTGAAAAGCACCTTAAAATACTTTGTTGTAGAGTGTTTGTAGTCTATTTGCTTAACTGGGATGTACTTCAAAAGTACTTTTATGAATGCATAACTAATCCGAACACTCAGTGATATCAAAAAGAAAAAAGAACGCATAACTAATTTTACTTGATGCTAATAAATAAAGAACTTTTTAAAACCACTCCCAAAAACACTTTCAGAGCATTTGTTAGAGTTGGATAAAATTCAAGCAAAACAAACATAAACTAGCTCCCAGTTGGTTGATGAAACACGTTTTAAATTTTTTTAGTTGATTGTTGTACAGCGTGAGTTTGTAAAAGAATTTGCAAATCGAAGTTAGCTGCTTTTGACTTGCCTAATAATAGGACTGATGTTTGTAATAACATTGCAGGCGGCTAAGGAGTTCGAGTCTGAGCTAAAGAAAGAAAGAGCCCGAGTCACTAGGAGAGACGGCAGTAGAAAAGCCTACATCATCAGTAGATGGAGGGGCAAGATTTGAAGGTATCAAACCAAAAGGAGAGTGTATGA

mRNA sequence

ATGATGCTCTCATCTGCAACTTTACCCTTCACTTCCTCCATACCCAGACCTCCATTTTCGTCCTCCAAATCCGCCTTCTTCGCCAACAATGGCACTAACACCGATAAAGCTCACAAGGGTTTGACTTGTAACGCTCTGTTTGGCCTTGGAGTGCCTGAACTTGCTGCAATCACCGGTGTTGCGGCTCTGGTTTTTGGGCCCAAGAAGTTGCCTGAAATTGGGAGGAGTATTGGCAAAACTGTCAAGAGCTTCCAACAGGCGGCTAAGGAGTTCGAGTCTGAGCTAAAGAAAGAAAGAGCCCGAATGGAGGGGCAAGATTTGAAGGTATCAAACCAAAAGGAGAGTGTATGA

Coding sequence (CDS)

ATGATGCTCTCATCTGCAACTTTACCCTTCACTTCCTCCATACCCAGACCTCCATTTTCGTCCTCCAAATCCGCCTTCTTCGCCAACAATGGCACTAACACCGATAAAGCTCACAAGGGTTTGACTTGTAACGCTCTGTTTGGCCTTGGAGTGCCTGAACTTGCTGCAATCACCGGTGTTGCGGCTCTGGTTTTTGGGCCCAAGAAGTTGCCTGAAATTGGGAGGAGTATTGGCAAAACTGTCAAGAGCTTCCAACAGGCGGCTAAGGAGTTCGAGTCTGAGCTAAAGAAAGAAAGAGCCCGAATGGAGGGGCAAGATTTGAAGGTATCAAACCAAAAGGAGAGTGTATGA

Protein sequence

MMLSSATLPFTSSIPRPPFSSSKSAFFANNGTNTDKAHKGLTCNALFGLGVPELAAITGVAALVFGPKKLPEIGRSIGKTVKSFQQAAKEFESELKKERARMEGQDLKVSNQKESV

Homology

[Close]

BLAST of Sed0015873.1 vs. NCBI nr
Match: XP_022932561.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita moschata])

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-34
Identity = 98/157 (62.42%), Postives = 105/157 (66.88%), Query Frame = 0


Query: 1   MMLSSATLPFTSSIPR-----PPFSSSKSAFFANNGT----------------------N 60
           M++SSATL FTSSIPR     PPFSSSKS+FFANN T                       
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT 60

Query: 61  TDKAHKGLTCNALFGLGVPELAAITGVAALVFGPKKLPEIGRSIGKTVKSFQQAAKEFES 117
            D+AHKGLTCNALFGLGVPEL  I GVAALVFGPKKLPE+G+SIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

[Close]

BLAST of Sed0015873.1 vs. NCBI nr
Match: XP_023529222.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.8 bits (395), Expect = 1.2e-34
Identity = 98/157 (62.42%), Postives = 105/157 (66.88%), Query Frame = 0


Query: 1   MMLSSATLPFTSSIPR-----PPFSSSKSAFFANNGT----------------------N 60
           M++SSATL FTSSIPR     PPFSSSKS+FFANN T                       
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT 60

Query: 61  TDKAHKGLTCNALFGLGVPELAAITGVAALVFGPKKLPEIGRSIGKTVKSFQQAAKEFES 117
            D+AHKGLTCNALFGLGVPEL  I GVAALVFGPKKLPE+G+SIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

[Close]

BLAST of Sed0015873.1 vs. NCBI nr
Match: XP_022158382.1 (sec-independent protein translocase protein TATA, chloroplastic [Momordica charantia])

HSP 1 Score: 156.4 bits (394), Expect = 1.5e-34
Identity = 95/143 (66.43%), Postives = 104/143 (72.73%), Query Frame = 0


Query: 1   MMLSSATLPFTSSIPR----PPFSSSKSAFFANNG----------TNTDKAHKGLTCNAL 60
           M++SSATL FTSS+PR    PPFSSSKSAFFAN+           T   +AHKGLTCNAL
Sbjct: 1   MVISSATLSFTSSLPRPPLSPPFSSSKSAFFANHALLLRTTTPTTTTHTRAHKGLTCNAL 60

Query: 61  FGLGVPELAAITGVAALVFGPKKLPEIGRSIGKTVKSFQQAAKEFESELKKERARM---- 117
           FGLGVPEL  I GVAALVFGPKKLPE+G+SIGKTVKSFQQAAKEFESELKKE   +    
Sbjct: 61  FGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPEAIGETA 120

[Close]

BLAST of Sed0015873.1 vs. NCBI nr
Match: KAG6588320.1 (Sec-independent protein translocase protein TATA, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.5 bits (389), Expect = 5.8e-34
Identity = 97/157 (61.78%), Postives = 105/157 (66.88%), Query Frame = 0


Query: 1   MMLSSATLPFTSSIPR-----PPFSSSKSAFFANNGT----------------------N 60
           M++SSATL FTSSIPR     PPFSSSKS+FF+NN T                       
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFSNNVTANSFNKGDHSHSSLLRTTRSRKT 60

Query: 61  TDKAHKGLTCNALFGLGVPELAAITGVAALVFGPKKLPEIGRSIGKTVKSFQQAAKEFES 117
            D+AHKGLTCNALFGLGVPEL  I GVAALVFGPKKLPE+G+SIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

[Close]

BLAST of Sed0015873.1 vs. NCBI nr
Match: KAG7020882.1 (Sec-independent protein translocase protein TATA, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.1 bits (388), Expect = 7.5e-34
Identity = 97/157 (61.78%), Postives = 104/157 (66.24%), Query Frame = 0


Query: 1   MMLSSATLPFTSSIPR-----PPFSSSKSAFFANNGT----------------------N 60
           M++SS TL FTSSIPR     PPFSSSKS+FFANN T                       
Sbjct: 1   MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKT 60

Query: 61  TDKAHKGLTCNALFGLGVPELAAITGVAALVFGPKKLPEIGRSIGKTVKSFQQAAKEFES 117
            D+AHKGLTCNALFGLGVPEL  I GVAALVFGPKKLPE+G+SIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

[Close]

BLAST of Sed0015873.1 vs. ExPASy Swiss-Prot
Match: Q9LKU2 (Sec-independent protein translocase protein TATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TATA PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 9.6e-24
Identity = 73/133 (54.89%), Postives = 84/133 (63.16%), Query Frame = 0


Query: 1   MMLSSATLPFTSSIPRPPFSSSKSAFFANNGTNT-----------------DKAHKGLTC 60
           M  S ATL     +  P  SSS+S+FF+N  T T                 +   K LTC
Sbjct: 1   MATSVATLSSPPPVSLPLLSSSRSSFFSNCFTVTTRPNTRSLVAIGRRIRQEPTRKPLTC 60

Query: 61  NALFGLGVPELAAITGVAALVFGPKKLPEIGRSIGKTVKSFQQAAKEFESELK--KERAR 115
           NALFGLGVPELA I GVAAL+FGPKKLPEIG+SIGKTVKSFQQAAKEFESELK   E + 
Sbjct: 61  NALFGLGVPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFESELKTEPEESV 120

[Close]

BLAST of Sed0015873.1 vs. ExPASy Swiss-Prot
Match: Q9XH46 (Sec-independent protein translocase protein TATA, chloroplastic OS=Pisum sativum OX=3888 GN=TATA PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-22
Identity = 67/131 (51.15%), Postives = 86/131 (65.65%), Query Frame = 0


Query: 4   SSATLPFTSSIPRPPFSSSKSAFFANNGTNT---------DKAHKGLTCNALFGLGVPEL 63
           SS+ +P  + +P     S+ S   +N+ T++          +  KG TCNA FGLGVPEL
Sbjct: 9   SSSVIP--TRLPNSSCYSNLSFLSSNSNTSSLLLKKARIKTRTTKGFTCNAFFGLGVPEL 68

Query: 64  AAITGVAALVFGPKKLPEIGRSIGKTVKSFQQAAKEFESELKKE---------RARMEGQ 117
             I GVAALVFGPKKLPE+GRSIG+TVKSFQQAAKEFE+ELKKE          +  E Q
Sbjct: 69  VVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPNPTEEISVASEQEKQ 128

[Close]

BLAST of Sed0015873.1 vs. ExPASy Swiss-Prot
Match: Q9XFJ8 (Sec-independent protein translocase protein TATA, chloroplastic OS=Zea mays OX=4577 GN=TATA PE=1 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 3.8e-20
Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 41  LTCNALFGLGVPELAAITGVAALVFGPKKLPEIGRSIGKTVKSFQQAAKEFESELKKE 99
           L C  LFGLGVPELA I GVAALVFGPK+LPEIGRSIGKTVKSFQQAAKEFE+ELKKE
Sbjct: 80  LGCKCLFGLGVPELAVIAGVAALVFGPKQLPEIGRSIGKTVKSFQQAAKEFETELKKE 137

[Close]

BLAST of Sed0015873.1 vs. ExPASy Swiss-Prot
Match: Q75GK3 (Sec-independent protein translocase protein TATA, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=TATA PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-19
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 0


Query: 43  CNALFGLGVPELAAITGVAALVFGPKKLPEIGRSIGKTVKSFQQAAKEFESELKKE 99
           C  LFGLGVPEL  I GVAALVFGPK+LPEIGRSIGKTVKSFQQAAKEFE+ELKKE
Sbjct: 81  CKCLFGLGVPELVVIAGVAALVFGPKQLPEIGRSIGKTVKSFQQAAKEFETELKKE 136

[Close]

BLAST of Sed0015873.1 vs. ExPASy Swiss-Prot
Match: Q31RR1 (Sec-independent protein translocase protein TatA OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=tatA PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-12
Identity = 33/52 (63.46%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 47 FGLGVPELAAITGVAALVFGPKKLPEIGRSIGKTVKSFQQAAKEFESELKKE 99
          FG+G+PE+  I  +A LVFGPKKLPEIGRS+GK ++ FQ A++EFESE+K+E
Sbjct: 4  FGIGLPEMLVILAIALLVFGPKKLPEIGRSLGKALRGFQDASREFESEIKRE 55

[Close]

BLAST of Sed0015873.1 vs. ExPASy TrEMBL
Match: A0A6J1EWP2 (sec-independent protein translocase protein TATA, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111439076 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.6e-35
Identity = 98/157 (62.42%), Postives = 105/157 (66.88%), Query Frame = 0


Query: 1   MMLSSATLPFTSSIPR-----PPFSSSKSAFFANNGT----------------------N 60
           M++SSATL FTSSIPR     PPFSSSKS+FFANN T                       
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT 60

Query: 61  TDKAHKGLTCNALFGLGVPELAAITGVAALVFGPKKLPEIGRSIGKTVKSFQQAAKEFES 117
            D+AHKGLTCNALFGLGVPEL  I GVAALVFGPKKLPE+G+SIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

[Close]

BLAST of Sed0015873.1 vs. ExPASy TrEMBL
Match: A0A6J1DX34 (sec-independent protein translocase protein TATA, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111024879 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 7.4e-35
Identity = 95/143 (66.43%), Postives = 104/143 (72.73%), Query Frame = 0


Query: 1   MMLSSATLPFTSSIPR----PPFSSSKSAFFANNG----------TNTDKAHKGLTCNAL 60
           M++SSATL FTSS+PR    PPFSSSKSAFFAN+           T   +AHKGLTCNAL
Sbjct: 1   MVISSATLSFTSSLPRPPLSPPFSSSKSAFFANHALLLRTTTPTTTTHTRAHKGLTCNAL 60

Query: 61  FGLGVPELAAITGVAALVFGPKKLPEIGRSIGKTVKSFQQAAKEFESELKKERARM---- 117
           FGLGVPEL  I GVAALVFGPKKLPE+G+SIGKTVKSFQQAAKEFESELKKE   +    
Sbjct: 61  FGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPEAIGETA 120

[Close]

BLAST of Sed0015873.1 vs. ExPASy TrEMBL
Match: A0A6J1HYU6 (sec-independent protein translocase protein TATA, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111468153 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 8.1e-34
Identity = 96/157 (61.15%), Postives = 103/157 (65.61%), Query Frame = 0


Query: 1   MMLSSATLPFTSSIPR-----PPFSSSKSAFFANNGT----------------------N 60
           M++SSATL FTSSIPR     PP SSSKS+FFANN T                       
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPLSSSKSSFFANNATANSFNKGDHSHSSLLRTTRSRKT 60

Query: 61  TDKAHKGLTCNALFGLGVPELAAITGVAALVFGPKKLPEIGRSIGKTVKSFQQAAKEFES 117
            D+AHKGLTCNALFGLGVPEL  I GVAALVFGPKKLPE+G+SIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

[Close]

BLAST of Sed0015873.1 vs. ExPASy TrEMBL
Match: A0A1S3BPB0 (sec-independent protein translocase protein TATA, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492233 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.2e-31
Identity = 93/158 (58.86%), Postives = 100/158 (63.29%), Query Frame = 0


Query: 1   MMLSSATLPFTSSIPR------PPFSSSKSAFFANNG----------------------T 60
           M++S+ TL FTSSIP+      P FSSSKSAFFANN                       T
Sbjct: 1   MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRT 60

Query: 61  NTDKAHKGLTCNALFGLGVPELAAITGVAALVFGPKKLPEIGRSIGKTVKSFQQAAKEFE 117
            T   HKGLTCNALFGLGVPEL  I GVAALVFGPKKLPE+G+SIGKTVKSFQQAAKEFE
Sbjct: 61  TTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

[Close]

BLAST of Sed0015873.1 vs. ExPASy TrEMBL
Match: A0A0A0LWL1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573670 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.2e-31
Identity = 93/158 (58.86%), Postives = 99/158 (62.66%), Query Frame = 0


Query: 1   MMLSSATLPFTSSIPR------PPFSSSKSAFFANNG----------------------T 60
           M++SS TL FTSSIP+      P FSSSKSAFFANN                       T
Sbjct: 1   MVISSPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATTSFFTYGDHNHSSLLRLTSFRT 60

Query: 61  NTDKAHKGLTCNALFGLGVPELAAITGVAALVFGPKKLPEIGRSIGKTVKSFQQAAKEFE 117
            T   HKG TCNALFGLGVPEL  I GVAALVFGPKKLPE+G+SIGKTVKSFQQAAKEFE
Sbjct: 61  TTKTTHKGFTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

[Close]

BLAST of Sed0015873.1 vs. TAIR 10
Match: AT5G28750.1 (Bacterial sec-independent translocation protein mttA/Hcf106 )

HSP 1 Score: 110.9 bits (276), Expect = 6.8e-25
Identity = 73/133 (54.89%), Postives = 84/133 (63.16%), Query Frame = 0


Query: 1   MMLSSATLPFTSSIPRPPFSSSKSAFFANNGTNT-----------------DKAHKGLTC 60
           M  S ATL     +  P  SSS+S+FF+N  T T                 +   K LTC
Sbjct: 1   MATSVATLSSPPPVSLPLLSSSRSSFFSNCFTVTTRPNTRSLVAIGRRIRQEPTRKPLTC 60

Query: 61  NALFGLGVPELAAITGVAALVFGPKKLPEIGRSIGKTVKSFQQAAKEFESELK--KERAR 115
           NALFGLGVPELA I GVAAL+FGPKKLPEIG+SIGKTVKSFQQAAKEFESELK   E + 
Sbjct: 61  NALFGLGVPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFESELKTEPEESV 120

[Close]

BLAST of Sed0015873.1 vs. TAIR 10
Match: AT5G52440.1 (Bacterial sec-independent translocation protein mttA/Hcf106 )

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06
Identity = 25/59 (42.37%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 45  ALFGLGVPELAAITGVAALVFGPKKLPEIGRSIGKTVKSFQQAAKEFESELKKERARME 104
           +LFG+G PE   I  VA LVFGPK L E+ R++GKT+++FQ   +E +   +  ++ +E
Sbjct: 85  SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTIRELQDVSRDFKSTLE 143

The following BLAST results are available for this feature:

BLAST of Sed0015873.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932561.1	1.2e-34	62.42	sec-independent protein translocase protein TATA, chloroplastic [Cucurbita mosch...	[more]
XP_023529222.1	1.2e-34	62.42	sec-independent protein translocase protein TATA, chloroplastic [Cucurbita pepo ...	[more]
XP_022158382.1	1.5e-34	66.43	sec-independent protein translocase protein TATA, chloroplastic [Momordica chara...	[more]
KAG6588320.1	5.8e-34	61.78	Sec-independent protein translocase protein TATA, chloroplastic, partial [Cucurb...	[more]
KAG7020882.1	7.5e-34	61.78	Sec-independent protein translocase protein TATA, chloroplastic, partial [Cucurb...	[more]

BLAST of Sed0015873.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LKU2	9.6e-24	54.89	Sec-independent protein translocase protein TATA, chloroplastic OS=Arabidopsis t...	[more]
Q9XH46	1.4e-22	51.15	Sec-independent protein translocase protein TATA, chloroplastic OS=Pisum sativum...	[more]
Q9XFJ8	3.8e-20	87.93	Sec-independent protein translocase protein TATA, chloroplastic OS=Zea mays OX=4...	[more]
Q75GK3	1.9e-19	87.50	Sec-independent protein translocase protein TATA, chloroplastic OS=Oryza sativa ...	[more]
Q31RR1	1.3e-12	63.46	Sec-independent protein translocase protein TatA OS=Synechococcus elongatus (str...	[more]

BLAST of Sed0015873.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EWP2	5.6e-35	62.42	sec-independent protein translocase protein TATA, chloroplastic OS=Cucurbita mos...	[more]
A0A6J1DX34	7.4e-35	66.43	sec-independent protein translocase protein TATA, chloroplastic OS=Momordica cha...	[more]
A0A6J1HYU6	8.1e-34	61.15	sec-independent protein translocase protein TATA, chloroplastic OS=Cucurbita max...	[more]
A0A1S3BPB0	2.2e-31	58.86	sec-independent protein translocase protein TATA, chloroplastic OS=Cucumis melo ...	[more]
A0A0A0LWL1	2.2e-31	58.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573670 PE=3 SV=1	[more]

BLAST of Sed0015873.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28750.1	6.8e-25	54.89	Bacterial sec-independent translocation protein mttA/Hcf106	[more]
AT5G52440.1	1.1e-06	42.37	Bacterial sec-independent translocation protein mttA/Hcf106	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 81..108
None	No IPR available	PRINTS	PR01506	TATBPROTEIN	coord: 66..85 score: 29.07 coord: 46..66 score: 33.4 coord: 85..103 score: 24.46
None	No IPR available	GENE3D	1.20.5.3310		coord: 48..100 e-value: 3.2E-17 score: 63.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR33162	SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA, CHLOROPLASTIC	coord: 14..110
None	No IPR available	PANTHER	PTHR33162:SF1	SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA, CHLOROPLASTIC	coord: 14..110
IPR003369	Sec-independent protein translocase protein TatA/B/E	PFAM	PF02416	TatA_B_E	coord: 49..99 e-value: 3.1E-18 score: 64.8
IPR006312	Sec-independent protein translocase protein TatA/E	TIGRFAM	TIGR01411	TIGR01411	coord: 48..94 e-value: 1.6E-18 score: 64.0
IPR006312	Sec-independent protein translocase protein TatA/E	HAMAP	MF_00236	TatA_E	coord: 46..106 score: 16.257936

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0015873	Sed0015873	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0015873.1-exon	Sed0015873.1-exon-LG06:6715313..6715408	exon
Sed0015873.1-exon	Sed0015873.1-exon-LG06:6715459..6715620	exon
Sed0015873.1-exon	Sed0015873.1-exon-LG06:6719405..6719449	exon
Sed0015873.1-exon	Sed0015873.1-exon-LG06:6719494..6719541	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0015873.1-cds	Sed0015873.1-cds-LG06:6715313..6715408	CDS
Sed0015873.1-cds	Sed0015873.1-cds-LG06:6715459..6715620	CDS
Sed0015873.1-cds	Sed0015873.1-cds-LG06:6719405..6719449	CDS
Sed0015873.1-cds	Sed0015873.1-cds-LG06:6719494..6719541	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0015873.1	Sed0015873.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0043953	protein transport by the Tat complex
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0016021	integral component of membrane