Sed0015617.1 (mRNA) Chayote v1

Overview


Name	Sed0015617.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	PMD domain-containing protein
Location	LG09: 37784336 .. 37787249 (-)
Sequence length	1278
RNA-Seq Expression	Sed0015617.1
Synteny	Sed0015617.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACTTTAGAGAGTCACGTGACCACTGTAGAAAAATCTAATTTTCTCTCCAAGTGGTCAAATGAAGGGTTCTTGGGTCCCAACACATCTTTGAAAGCGTGGTTCTTAGACTCCCCAATTCATAATCATATGCCAAACAACAATCCGTTGTCAACACTAGGTCGACGTATTATTGCAGATGACAAAGTTCTTTGGGGCAATCAGATTGAAGATTCATGGAGAGTTCTCATGGATCAAATTTTATTGGGAATGGCTGGAGGTGATCGTTTTCAGGAATGACAAAGTGCTAAAGAAAACTCGTCTATTGGACGTTGTAATGGCTTCTATGTATACATACGACCGTAACATTGATATAGTTCGGGCTTTCTGCGAAGCATGGTGTCCACTAACCAACACACTTCATACATCTTCAGGAGAATTATCGATTACTTTGTGGGATTTGTGGAGACTAGGGGGTCTTACCATCAAAGGGAGATTTTATGATGAAGTTATCCCGTGTGCAAAAGAGTTGCTAGCCTCGCCCGAACAAGAAGAAGAACAATGCCCAAAAAGTTGTGAACATTTATTTGCTGCTTATTATAACATCGCCTCTGAACAAGTTGACCGTTCTCATATTTCTATCAACTCGTGGGTTTCTTTTTGGTTTAAGGGTGATTTGAAGTATGTGAAGCCTCCTAGTAGAAAGTCGAAGAAGAGTAAACGTCCTTATCCAACTCATAATCCAAGTGGCGTATCTATCAGTCACCACCATTGGTCTGAAAAAGAGAAAGCTTTATTCGAAGAGTTAGACATAGAGACAGACATGCAAGATAAGACGTATTTGGCTGCCTTTCTTTCCTGCTGGTTGTGCGTCTTTGTGTTTCCCACTAAGCAAGATTCAATCCGTCCAACGGTTTTTAAGGCCGCATGTCTTATGGCGAAGGATATATGTTAGTCTTGCCGTCCCAGTTCTAGCCAATATATATCGTGGACTTGCCGGATTTTTCAAGCGTCATCTCCCATTGGCTCATCAAAGGCATGTCTTCCTTTACATTACGTACATGGCTGGCTTGCGCTTTATTTTGATACACACTTCAAAGTTCCTAAGCCAGTTAAAGGTCCAATGATGGTCGAATTTTCTGGCGAAAGTGGGGCCAAATATTTTACTGATTTTGAAGCTCGTGTACACATGCACAAGGGTAGACATATATCATGGTATGCTAGCCTTTTAGCTAGAAACAAAGGTGAACGCTTGACAGATGATAAAAGTCTTACGTTTTGGTCCTCATCATTCTTCATAAGTCTTCGTTCATGCTTGTTATCTTCACGAAGTGGATCGACATTAGTTGTTGAAGCTTACAACCCTTGTCGATTTAGCCGGCAATTTGGATTCTGTCAAGACATACCCAATGATTTGAGTAAAGTGATTACTAGGGCTACTTTAAATAATGTATTGCGCCTCTGGATGATATGCGTTGAAGTAGAGACATCCTCTCAAGTATATATTCCTGTGCATGCAATGAACCCACATAATCAAGTTACCGAACGTTACCACAATTGGTGGTCGGTAAAGAATGGGAGCTATCTTGAGGATAACATACAAAGGTTGGTGAATAGTGTCGCTCCTATTCCTTCTAAACCCAAGTTCCCCAAGGCAGTTGGTGATGATAAAGGAGGCAAACAAATTCGCATGTTTGATCCCGCTAATTTTGCCACCACAGAAAATGAGGAGAGTCATAGTAGTCATACTGACCGGCATTGGAAGAGGCAGAAGAAGTCCCATAAACTTTCAATTTTTGACGATGACTTTTTTGAGGGGGTTCCAAGTGCTTCGCAGTTTCAAGATCTTCCATTAACCTTGGTTGGATTTCCTTTGTTGATTTATTTAATCTGGAGTAATCGTTTTCTTTAACACTTGCTGATTTACTTTTTTTTTTTTTTTAGTCACCTCTTGATGATTCAATTATGGAAGCAGTAGAGCAAACCAGTCCAAAATCAGTCGTCAGTCCGGAGTTGTTTCATTCTAATGACTGCGCGCGTGGGTCAGTTCAAGGCTCCAATGAATAAAGCTAGATTTCCACCCTCTATTCCTACAACTGATAAAGTGATAAAATCATCAAGGGAGAAGACACAGTGTAGGGAGATGCCAACATTGAAAGATGCGTCGCAGTTGATAGGAGAGAAACGGTTGGGAGAGACATCACAGTTGAGAGAGATGTCGCAGTTGGGGAAGACATTATCATCGAAAGAACCTGCTTTGCACTTGGGTGGTGTATCGGTTCCTGATGCTAGTGAGATCTCTCATTGTTGTGCAAATACTGACTTACTGAATGTAAACAAGGAAACTGCTTTGGTTTTGTGGGAAAAAATACGCCAAAGGATTGTAGATACTCCGTTTGAAAAGATTTCACGTGCTACAAAGTATGCAGACACGATTTTTCAAGGCATCTCAAATATTTGCGCAACTAACCTCCCGTCCCTACAAAAATTTGTCGGAGAATACTTTCAAAAGGTTGGGGAATTCAACAAGCTGCAATCATTACATTCTTCCCAACTCTCTTCAGCAAGCAAAACTCGTCAGTTGGTAGAGGCAAAGGTTACCTTGGATAACTTATTAAGTAACCAGAATAGCACAATGGCTGAGATGGATGTGTTCATTCAACAACATCAAAGGTCATTACGAGAGGGAGAAAGGTTGGAAGCCCAACTTAAAGCTTTGAAGACCCAACAAGAGGAAATCTCGGAGTCTATTGTTGAGAAGGAGACTTATTTGGCTCATCTCAAACGTGATGAATGTGCAGCACGTGAAGCTATAACTGATGTTGAAAGTTCTGATGCCATTTCTGATGAAGATGCTTGTAACTTGGAGATACTTCATGGGATGTTGAGTGATGCTCTTCAAGAATTGCAAGATTTCAAATGGGTTCCATGA

mRNA sequence

ATGAAGACTTTAGAGAGTCACGTGACCACTGTAGAAAAATCTAATTTTCTCTCCAAGTGGTCAAATGAAGGGTTCTTGGGTCCCAACACATCTTTGAAAGCGTGGTTCTTAGACTCCCCAATTCATAATCATATGCCAAACAACAATCCGTTGTCAACACTAGGTCGACTTCCTAAGCCAGTTAAAGGTCCAATGATGGTCGAATTTTCTGGCGAAAGTGGGGCCAAATATTTTACTGATTTTGAAGCTCGTGTACACATGCACAAGGGTAGACATATATCATGCCGGCAATTTGGATTCTGTCAAGACATACCCAATGATTTGAGTAAAGTGATTACTAGGGCTACTTTAAATAATGTATTGCGCCTCTGGATGATATGCGTTGAAGTAGAGACATCCTCTCAAGTATATATTCCTGTGCATGCAATGAACCCACATAATCAAGTTACCGAACGTTACCACAATTGGTGGTCGGTAAAGAATGGGAGCTATCTTGAGGATAACATACAAAGGTTGGTGAATAGTGTCGCTCCTATTCCTTCTAAACCCAAGTTCCCCAAGGCAGTTGGTGATGATAAAGGAGGCAAACAAATTCGCATGTTTGATCCCGCTAATTTTGCCACCACAGAAAATGAGGAGAGTCATAGTAGTCATACTGACCGGCATTGGAAGAGGCAGAAGAAGTCCCATAAACTTTCAATTTTTGACGATGACTTTTTTGAGGGGGTTCCAAGTGCTTCGCAGTTTCAAGATCTTCCATTAACCTTGTATGCAGACACGATTTTTCAAGGCATCTCAAATATTTGCGCAACTAACCTCCCGTCCCTACAAAAATTTGTCGGAGAATACTTTCAAAAGGTTGGGGAATTCAACAAGCTGCAATCATTACATTCTTCCCAACTCTCTTCAGCAAGCAAAACTCGTCAGTTGGTAGAGGCAAAGGTTACCTTGGATAACTTATTAAGTAACCAGAATAGCACAATGGCTGAGATGGATGTGTTCATTCAACAACATCAAAGGTCATTACGAGAGGGAGAAAGGTTGGAAGCCCAACTTAAAGCTTTGAAGACCCAACAAGAGGAAATCTCGGAGTCTATTGTTGAGAAGGAGACTTATTTGGCTCATCTCAAACGTGATGAATGTGCAGCACGTGAAGCTATAACTGATGTTGAAAGTTCTGATGCCATTTCTGATGAAGATGCTTGTAACTTGGAGATACTTCATGGGATGTTGAGTGATGCTCTTCAAGAATTGCAAGATTTCAAATGGGTTCCATGA

Coding sequence (CDS)

ATGAAGACTTTAGAGAGTCACGTGACCACTGTAGAAAAATCTAATTTTCTCTCCAAGTGGTCAAATGAAGGGTTCTTGGGTCCCAACACATCTTTGAAAGCGTGGTTCTTAGACTCCCCAATTCATAATCATATGCCAAACAACAATCCGTTGTCAACACTAGGTCGACTTCCTAAGCCAGTTAAAGGTCCAATGATGGTCGAATTTTCTGGCGAAAGTGGGGCCAAATATTTTACTGATTTTGAAGCTCGTGTACACATGCACAAGGGTAGACATATATCATGCCGGCAATTTGGATTCTGTCAAGACATACCCAATGATTTGAGTAAAGTGATTACTAGGGCTACTTTAAATAATGTATTGCGCCTCTGGATGATATGCGTTGAAGTAGAGACATCCTCTCAAGTATATATTCCTGTGCATGCAATGAACCCACATAATCAAGTTACCGAACGTTACCACAATTGGTGGTCGGTAAAGAATGGGAGCTATCTTGAGGATAACATACAAAGGTTGGTGAATAGTGTCGCTCCTATTCCTTCTAAACCCAAGTTCCCCAAGGCAGTTGGTGATGATAAAGGAGGCAAACAAATTCGCATGTTTGATCCCGCTAATTTTGCCACCACAGAAAATGAGGAGAGTCATAGTAGTCATACTGACCGGCATTGGAAGAGGCAGAAGAAGTCCCATAAACTTTCAATTTTTGACGATGACTTTTTTGAGGGGGTTCCAAGTGCTTCGCAGTTTCAAGATCTTCCATTAACCTTGTATGCAGACACGATTTTTCAAGGCATCTCAAATATTTGCGCAACTAACCTCCCGTCCCTACAAAAATTTGTCGGAGAATACTTTCAAAAGGTTGGGGAATTCAACAAGCTGCAATCATTACATTCTTCCCAACTCTCTTCAGCAAGCAAAACTCGTCAGTTGGTAGAGGCAAAGGTTACCTTGGATAACTTATTAAGTAACCAGAATAGCACAATGGCTGAGATGGATGTGTTCATTCAACAACATCAAAGGTCATTACGAGAGGGAGAAAGGTTGGAAGCCCAACTTAAAGCTTTGAAGACCCAACAAGAGGAAATCTCGGAGTCTATTGTTGAGAAGGAGACTTATTTGGCTCATCTCAAACGTGATGAATGTGCAGCACGTGAAGCTATAACTGATGTTGAAAGTTCTGATGCCATTTCTGATGAAGATGCTTGTAACTTGGAGATACTTCATGGGATGTTGAGTGATGCTCTTCAAGAATTGCAAGATTTCAAATGGGTTCCATGA

Protein sequence

MKTLESHVTTVEKSNFLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTLGRLPKPVKGPMMVEFSGESGAKYFTDFEARVHMHKGRHISCRQFGFCQDIPNDLSKVITRATLNNVLRLWMICVEVETSSQVYIPVHAMNPHNQVTERYHNWWSVKNGSYLEDNIQRLVNSVAPIPSKPKFPKAVGDDKGGKQIRMFDPANFATTENEESHSSHTDRHWKRQKKSHKLSIFDDDFFEGVPSASQFQDLPLTLYADTIFQGISNICATNLPSLQKFVGEYFQKVGEFNKLQSLHSSQLSSASKTRQLVEAKVTLDNLLSNQNSTMAEMDVFIQQHQRSLREGERLEAQLKALKTQQEEISESIVEKETYLAHLKRDECAAREAITDVESSDAISDEDACNLEILHGMLSDALQELQDFKWVP

Homology

[Close]

BLAST of Sed0015617.1 vs. NCBI nr
Match: KAA0050733.1 (uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa] >TYJ95697.1 uncharacterized protein E5676_scaffold726G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 2.1e-33
Identity = 83/205 (40.49%), Postives = 112/205 (54.63%), Query Frame = 0


Query: 61  VKGPMMVEFSGESGAKYFTDFEARVHMHKGRHISC-RQFGFCQDIPNDLSKVITRATLNN 120
           ++GP MVEFSGE GAKY+T+ EAR+H+HKG      RQFGF QD+P DLS+ I +A L N
Sbjct: 297 LRGPCMVEFSGEGGAKYYTNLEARMHIHKGNPCRFGRQFGFYQDVPYDLSEKIPKANLAN 356

Query: 121 VLRLWMICVEVETSSQVYIPVHAMNPHNQVTERYHNWWSVKNGSYLEDNIQRLVN----- 180
           V   WMICV   T SQVY+P   ++P N +T  Y  WW  K+G YL++ +Q L++     
Sbjct: 357 VRYHWMICVRESTLSQVYLPAPTLHPCNHITSHYKAWWLAKHGDYLQEGLQNLIDRPTPS 416

Query: 181 ----------------------SVAPIPSKPKFPKAVGDDKGGKQIRMFDPANFATTENE 238
                                 +  P+ ++ KF    G D   K +         +T  E
Sbjct: 417 LIKSKTTKKIEHNPDKKICFSKTKEPVDAQFKFAARSGADNMHKDLLKLTTDKRPSTHTE 476

[Close]

BLAST of Sed0015617.1 vs. NCBI nr
Match: KAA0050733.1 (uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa] >TYJ95697.1 uncharacterized protein E5676_scaffold726G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 1.0e-03
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 11 VEKSNF--LSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTLG 56
          V K NF  L KWS E  + PN+ L +WFL+S IHN +PN NP STLG
Sbjct: 46 VLKENFILLPKWSKEKSVNPNSPLTSWFLESSIHNKIPNENPESTLG 92

HSP 2 Score: 145.6 bits (366), Expect = 9.8e-31
Identity = 94/299 (31.44%), Postives = 124/299 (41.47%), Query Frame = 0


Query: 56  RLPKPVKGPMMVEFSGESGAKYFTDFEARVHMHKGRHIS--------------------- 115
           + P+ ++GP MVEFSGE GAKY+T+ EAR H+HKG+++S                     
Sbjct: 395 KAPRSLRGPRMVEFSGEGGAKYYTNLEARTHIHKGKYVSWHACLPTKNKDELLTDDGELI 454

Query: 116 ---------------------------------CRQFGFCQDIPNDLSKVITRATLNNVL 175
                                             RQFGF QD+P DL + I  A   NV 
Sbjct: 455 SWNASFFISIRSCFLSSQCGSSTVIEPYSPCRFSRQFGFYQDVPYDLGEEIPEANFFNVR 514

Query: 176 RLWMICVEVETSSQVYIPVHAMNPHNQVTERYHNWWSVKNGSYLEDNIQRLVNSVAPIPS 235
             WMIC+   T SQVY+PV A NP   VT  Y  WW  K+G YL++ +Q L++   P   
Sbjct: 515 YCWMICIRENTLSQVYLPVSAPNPDTHVTSHYKVWWLAKHGDYLQEGVQHLIDRPTPPHI 574

Query: 236 KPKFPKAV-----------------------------------------------GDDKG 254
           K K  K +                                               G D  
Sbjct: 575 KSKTTKKIEHNFGSGNQKICSDETDERLVEKIEGGTKRLVDNLSLSTRFKHLIKGGIDNV 634

[Close]

BLAST of Sed0015617.1 vs. NCBI nr
Match: XP_031745312.1 (uncharacterized protein LOC116405439 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-05
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 16 FLSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTLGR 57
          FL KWS E F+ PN+SLK+WFL+S IHN  PN +P STLGR
Sbjct: 53 FLPKWSKERFVNPNSSLKSWFLESSIHNKPPNEDPESTLGR 93

HSP 2 Score: 142.9 bits (359), Expect = 6.4e-30
Identity = 75/188 (39.89%), Postives = 106/188 (56.38%), Query Frame = 0


Query: 57  LPKPVKGPMMVEFSGESGAKYFTDFEARVHMHKGRHISC------RQFGFCQDIPNDLSK 116
           LP  V+GP M  FSGE  + YF ++EAR  +H G  I        R      D+PND+  
Sbjct: 105 LPTEVRGPKMTNFSGEGESIYFGEYEARELIHNGARIQWHASLQNRSKHERMDLPNDIGG 164

Query: 117 VITRATLNNVLRLWMICVEVETSSQVYIPVHAMNPHNQVTERYHNWWSVKNGSYLEDNIQ 176
           +    TL+N+L  W IC    T S++Y+P  ++ P   VT+R+ +WW+ K+G+Y EDN  
Sbjct: 165 MPPAITLDNILYHWRICTRRNTLSELYLPTRSLEPCKHVTQRFTDWWTTKHGTYFEDNRH 224

Query: 177 RLVNSVAPIPSKPKFPKAVGDDKGGKQIRMFDP-----ANFATTENEESHSSHTDRHWKR 234
            LV+SV P PS+P+ PK  G + GGK+IR+ +              +ES SS +DRHWKR
Sbjct: 225 HLVSSVIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKR 284

[Close]

BLAST of Sed0015617.1 vs. NCBI nr
Match: KAA0053466.1 (hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-29
Identity = 84/234 (35.90%), Postives = 117/234 (50.00%), Query Frame = 0


Query: 57  LPKPVKGPMMVEFSGESGAKYFTDFEARVHMHKGRHI----------------------- 116
           LP+ V+GP M  FSGE G+ YF ++EAR  +H G  I                       
Sbjct: 410 LPREVRGPKMTNFSGEGGSIYFGEYEARELIHNGVRIQWHANLHNRNKHERMVDTHDSSF 469

Query: 117 ----------SC---------------------RQFGFCQDIPNDLSKVITRATLNNVLR 176
                     SC                     RQFGF QD+PND+  +    TL+N+L 
Sbjct: 470 LQMSYFVSMRSCYLSSRCENTWIITSYSPYRFGRQFGFYQDLPNDIGGMPPAITLDNILY 529

Query: 177 LWMICVEVETSSQVYIPVHAMNPHNQVTERYHNWWSVKNGSYLEDNIQRLVNSVAPIPSK 234
            W IC+   T S++Y+PV ++ P   VT+R+ +WW+ K+ +Y EDN   LV+S  P PS+
Sbjct: 530 HWRICMRRNTLSELYLPVRSLEPCKHVTQRFTDWWTTKHMNYFEDNRHHLVSSAIPPPSQ 589

[Close]

BLAST of Sed0015617.1 vs. NCBI nr
Match: KAA0057575.1 (hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 141.4 bits (355), Expect = 1.9e-29
Identity = 77/200 (38.50%), Postives = 110/200 (55.00%), Query Frame = 0


Query: 57  LPKPVKGPMMVEFSGESGAKYFTDFEARVHMHKG----------------RHISCRQFGF 116
           LP+ V+GP M  FSGE G+ YF  +EA   +H G                R +      F
Sbjct: 234 LPREVRGPKMTNFSGEGGSIYFGKYEAHELIHNGARIQWHANLHNRNKHERMVDTHDSSF 293

Query: 117 CQ----DIPNDLSKVITRATLNNVLRLWMICVEVETSSQVYIPVHAMNPHNQVTERYHNW 176
            Q    D+PND+  +    TL+N+L  W IC+   T S++Y+P  ++ P   VT+R+ +W
Sbjct: 294 LQMSYFDLPNDIGGMPPAITLDNILYHWRICMRRNTLSELYLPARSLEPCKHVTQRFTDW 353

Query: 177 WSVKNGSYLEDNIQRLVNSVAPIPSKPKFPKAVGDDKGGKQIRMFD--PANFATTENE-E 234
           W+ K+G+Y EDN   LV+S  P PS+P+ PK  G + GGK+IR+ +    N     NE E
Sbjct: 354 WTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEDEVNEHE 413

[Close]

BLAST of Sed0015617.1 vs. ExPASy TrEMBL
Match: A0A5A7U4C3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00240 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.0e-33
Identity = 83/205 (40.49%), Postives = 112/205 (54.63%), Query Frame = 0


Query: 61  VKGPMMVEFSGESGAKYFTDFEARVHMHKGRHISC-RQFGFCQDIPNDLSKVITRATLNN 120
           ++GP MVEFSGE GAKY+T+ EAR+H+HKG      RQFGF QD+P DLS+ I +A L N
Sbjct: 297 LRGPCMVEFSGEGGAKYYTNLEARMHIHKGNPCRFGRQFGFYQDVPYDLSEKIPKANLAN 356

Query: 121 VLRLWMICVEVETSSQVYIPVHAMNPHNQVTERYHNWWSVKNGSYLEDNIQRLVN----- 180
           V   WMICV   T SQVY+P   ++P N +T  Y  WW  K+G YL++ +Q L++     
Sbjct: 357 VRYHWMICVRESTLSQVYLPAPTLHPCNHITSHYKAWWLAKHGDYLQEGLQNLIDRPTPS 416

Query: 181 ----------------------SVAPIPSKPKFPKAVGDDKGGKQIRMFDPANFATTENE 238
                                 +  P+ ++ KF    G D   K +         +T  E
Sbjct: 417 LIKSKTTKKIEHNPDKKICFSKTKEPVDAQFKFAARSGADNMHKDLLKLTTDKRPSTHTE 476

[Close]

BLAST of Sed0015617.1 vs. ExPASy TrEMBL
Match: A0A5A7U4C3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00240 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.0e-04
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 11 VEKSNF--LSKWSNEGFLGPNTSLKAWFLDSPIHNHMPNNNPLSTLG 56
          V K NF  L KWS E  + PN+ L +WFL+S IHN +PN NP STLG
Sbjct: 46 VLKENFILLPKWSKEKSVNPNSPLTSWFLESSIHNKIPNENPESTLG 92

HSP 2 Score: 142.9 bits (359), Expect = 3.1e-30
Identity = 75/188 (39.89%), Postives = 106/188 (56.38%), Query Frame = 0


Query: 57  LPKPVKGPMMVEFSGESGAKYFTDFEARVHMHKGRHISC------RQFGFCQDIPNDLSK 116
           LP  V+GP M  FSGE  + YF ++EAR  +H G  I        R      D+PND+  
Sbjct: 105 LPTEVRGPKMTNFSGEGESIYFGEYEARELIHNGARIQWHASLQNRSKHERMDLPNDIGG 164

Query: 117 VITRATLNNVLRLWMICVEVETSSQVYIPVHAMNPHNQVTERYHNWWSVKNGSYLEDNIQ 176
           +    TL+N+L  W IC    T S++Y+P  ++ P   VT+R+ +WW+ K+G+Y EDN  
Sbjct: 165 MPPAITLDNILYHWRICTRRNTLSELYLPTRSLEPCKHVTQRFTDWWTTKHGTYFEDNRH 224

Query: 177 RLVNSVAPIPSKPKFPKAVGDDKGGKQIRMFDP-----ANFATTENEESHSSHTDRHWKR 234
            LV+SV P PS+P+ PK  G + GGK+IR+ +              +ES SS +DRHWKR
Sbjct: 225 HLVSSVIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKR 284

[Close]

BLAST of Sed0015617.1 vs. ExPASy TrEMBL
Match: A0A5A7UGW6 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00140 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.9e-30
Identity = 84/234 (35.90%), Postives = 117/234 (50.00%), Query Frame = 0


Query: 57  LPKPVKGPMMVEFSGESGAKYFTDFEARVHMHKGRHI----------------------- 116
           LP+ V+GP M  FSGE G+ YF ++EAR  +H G  I                       
Sbjct: 410 LPREVRGPKMTNFSGEGGSIYFGEYEARELIHNGVRIQWHANLHNRNKHERMVDTHDSSF 469

Query: 117 ----------SC---------------------RQFGFCQDIPNDLSKVITRATLNNVLR 176
                     SC                     RQFGF QD+PND+  +    TL+N+L 
Sbjct: 470 LQMSYFVSMRSCYLSSRCENTWIITSYSPYRFGRQFGFYQDLPNDIGGMPPAITLDNILY 529

Query: 177 LWMICVEVETSSQVYIPVHAMNPHNQVTERYHNWWSVKNGSYLEDNIQRLVNSVAPIPSK 234
            W IC+   T S++Y+PV ++ P   VT+R+ +WW+ K+ +Y EDN   LV+S  P PS+
Sbjct: 530 HWRICMRRNTLSELYLPVRSLEPCKHVTQRFTDWWTTKHMNYFEDNRHHLVSSAIPPPSQ 589

[Close]

BLAST of Sed0015617.1 vs. ExPASy TrEMBL
Match: A0A5A7UVI5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00470 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 9.0e-30
Identity = 77/200 (38.50%), Postives = 110/200 (55.00%), Query Frame = 0


Query: 57  LPKPVKGPMMVEFSGESGAKYFTDFEARVHMHKG----------------RHISCRQFGF 116
           LP+ V+GP M  FSGE G+ YF  +EA   +H G                R +      F
Sbjct: 234 LPREVRGPKMTNFSGEGGSIYFGKYEAHELIHNGARIQWHANLHNRNKHERMVDTHDSSF 293

Query: 117 CQ----DIPNDLSKVITRATLNNVLRLWMICVEVETSSQVYIPVHAMNPHNQVTERYHNW 176
            Q    D+PND+  +    TL+N+L  W IC+   T S++Y+P  ++ P   VT+R+ +W
Sbjct: 294 LQMSYFDLPNDIGGMPPAITLDNILYHWRICMRRNTLSELYLPARSLEPCKHVTQRFTDW 353

Query: 177 WSVKNGSYLEDNIQRLVNSVAPIPSKPKFPKAVGDDKGGKQIRMFD--PANFATTENE-E 234
           W+ K+G+Y EDN   LV+S  P PS+P+ PK  G + GGK+IR+ +    N     NE E
Sbjct: 354 WTTKHGTYFEDNRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEDEVNEHE 413

[Close]

BLAST of Sed0015617.1 vs. ExPASy TrEMBL
Match: A0A5A7SHN8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00400 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.5e-29
Identity = 88/268 (32.84%), Postives = 124/268 (46.27%), Query Frame = 0


Query: 57  LPKPVKGPMMVEFSGESGAKYFTDFEARVHMHKGRHI----------------------- 116
           LP  V+GP M  FSGE G+ YF ++EAR  +H G  I                       
Sbjct: 376 LPTEVRGPKMTNFSGEGGSIYFGEYEARELIHNGARIQWHANLQNRSKHERMVDTHDSSF 435

Query: 117 ----------SC---------------------RQFGFCQDIPNDLSKVITRATLNNVLR 176
                     SC                     RQFGF QD+PND+  +    TL+N+L 
Sbjct: 436 LQMSYSVSMCSCYLSSRCENTWIITSYSPYKFERQFGFYQDLPNDIGGMPPAITLDNILY 495

Query: 177 LWMICVEVETSSQVYIPVHAMNPHNQVTERYHNWWSVKNGSYLEDNIQRLVNSVAPIPSK 236
            W IC    T S++Y+P  ++ P   VT+R+ +WW+ K+G+Y EDN   LV+S  P PS+
Sbjct: 496 HWRICTRRNTLSELYLPARSLEPCKHVTQRFTDWWTTKHGTYFEDNRHHLVSSAIPPPSQ 555

Query: 237 PKFPKAVGDDKGGKQIRMFDP-----ANFATTENEESHSSHTDRHWKRQKKSHKLSIFDD 266
            + PK  G + GGK+IR+ +              +ES SS +DRHWKR  K  K  +  D
Sbjct: 556 SRLPKNRGRNLGGKEIRLVEAMAPNLEEEVKEHKDESDSSKSDRHWKRPLK--KAEVSGD 615

The following BLAST results are available for this feature:

BLAST of Sed0015617.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050733.1	2.1e-33	40.49	uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa] >TYJ9...	[more]
KAA0050733.1	1.0e-03	57.45	uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa] >TYJ9...	[more]
XP_031745312.1	1.1e-05	65.85	uncharacterized protein LOC116405439 [Cucumis sativus]	[more]
KAA0053466.1	1.4e-29	35.90	hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa]	[more]
KAA0057575.1	1.9e-29	38.50	hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa]	[more]

BLAST of Sed0015617.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0015617.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U4C3	1.0e-33	40.49	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U4C3	5.0e-04	57.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UGW6	6.9e-30	35.90	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UVI5	9.0e-30	38.50	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7SHN8	1.5e-29	32.84	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of Sed0015617.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 338..365
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 56..370

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0015617	Sed0015617	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0015617.1-cds	Sed0015617.1-cds-LG09:37784336..37784845	CDS
Sed0015617.1-cds	Sed0015617.1-cds-LG09:37785407..37785890	CDS
Sed0015617.1-cds	Sed0015617.1-cds-LG09:37786053..37786167	CDS
Sed0015617.1-cds	Sed0015617.1-cds-LG09:37787081..37787249	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0015617.1-exon	Sed0015617.1-exon-LG09:37784336..37784845	exon
Sed0015617.1-exon	Sed0015617.1-exon-LG09:37785407..37785890	exon
Sed0015617.1-exon	Sed0015617.1-exon-LG09:37786053..37786167	exon
Sed0015617.1-exon	Sed0015617.1-exon-LG09:37787081..37787249	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0015617.1	Sed0015617.1-protein	polypeptide