Sed0014995.1 (mRNA) Chayote v1

Overview


Name	Sed0014995.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	ULP_PROTEASE domain-containing protein
Location	LG09: 31859513 .. 31860350 (-)
Sequence length	252
RNA-Seq Expression	Sed0014995.1
Synteny	Sed0014995.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAAAGACGTCTCAATGCTAAAATAGCTAACACCACTTTCGCGAGTATATAATTTTTATTATTTGGATCCATCTCTATTTTTAGTGACTATGAGTCACGAGCAAAGATGCTGGCTACAAGACTTGAACAATTGGACTCTACTCAAGTTTTAATATTTTCGTACAATTCTGGGTATGTCTTATATGAATTCTTTATATGTCTCATTACATAATATAACTTGCATGTAATATTTCAATCCTGTATTAGGAATCATTGGACTTTGATACTTATTGACAATTCAAGTGGCACTGTATTTTGGATGGATCCACTGAAAAATCGACTTGACCAAGATATCATTAGCGTGATTGGAATGTACGTTAACTTTTTTATATTCTTAATATTATCATGAATAAGTTTATGTTTATTAATCTAGTATCATTTCTAAATTTGCAGATCGTTCAAGCAATTAAAAAAGAAGAAGTCTGTTTGGAAACCTATCAAGGTAACTTATTCAATAAGTATGTGTCATCAGCTATGAAATATTTTTACTATCTTATCAATGTTTTATGATGTTTCTTTAAATTAGTGTCCAAAACAACCTGGGGTAGTGGAATGCGGCTACTACATCATGATGTACATGCGAGAGATTGTGTGCCAAAACACGAACTCAATAATTGATGTAGTAAGTATATATAAGTAGAGTTAGATATTAATTTAATAGTAATATACTAATATTTATATTTTCTTATCTTATTTTCAGATGAATAATGCACCATCTAGCTACACACAAGATGACATTGATAAAGTACGAACTGAATGGGCAGAGTTCGTGTTTACCTACCTACACATCGCATAG

mRNA sequence

ATGTTAAAGACATCGTTCAAGCAATTAAAAAAGAAGAAGTCTGTTTGGAAACCTATCAAGTGTCCAAAACAACCTGGGGTAGTGGAATGCGGCTACTACATCATGATGTACATGCGAGAGATTGTGTGCCAAAACACGAACTCAATAATTGATGTAATGAATAATGCACCATCTAGCTACACACAAGATGACATTGATAAAGTACGAACTGAATGGGCAGAGTTCGTGTTTACCTACCTACACATCGCATAG

Coding sequence (CDS)

ATGTTAAAGACATCGTTCAAGCAATTAAAAAAGAAGAAGTCTGTTTGGAAACCTATCAAGTGTCCAAAACAACCTGGGGTAGTGGAATGCGGCTACTACATCATGATGTACATGCGAGAGATTGTGTGCCAAAACACGAACTCAATAATTGATGTAATGAATAATGCACCATCTAGCTACACACAAGATGACATTGATAAAGTACGAACTGAATGGGCAGAGTTCGTGTTTACCTACCTACACATCGCATAG

Protein sequence

MLKTSFKQLKKKKSVWKPIKCPKQPGVVECGYYIMMYMREIVCQNTNSIIDVMNNAPSSYTQDDIDKVRTEWAEFVFTYLHIA

Homology

[Close]

BLAST of Sed0014995.1 vs. NCBI nr
Match: TYK04924.1 (hypothetical protein E5676_scaffold143G001330 [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 1.1e-18
Identity = 44/79 (55.70%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 5   SFKQLKKKKSVWKPIKCPKQPGVVECGYYIMMYMREIVCQNTNSIIDVMNNAPSSYTQDD 64
           SF  + KKK  W+ +KCPKQ GVVECGYY+M +MR+I+   + SII +M ++P +YTQDD
Sbjct: 222 SFNIMNKKKPNWRVVKCPKQSGVVECGYYVMRFMRDIIMSTSTSIIQIMKDSPRAYTQDD 281

Query: 65  IDKVRTEWAEFVFTYLHIA 84
           ID +R+EWAEFV  ++H A
Sbjct: 282 IDCIRSEWAEFVGKHVHCA 300

[Close]

BLAST of Sed0014995.1 vs. NCBI nr
Match: TYK18000.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 1.4e-18
Identity = 43/83 (51.81%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 1   MLKTSFKQLKKKKSVWKPIKCPKQPGVVECGYYIMMYMREIVCQNTNSIIDVMNNAPSSY 60
           +++ SF  + KKK  W+ +KCPKQ GVVECGYY+M +MR+I+   + SII +M ++P +Y
Sbjct: 401 VVERSFNIMNKKKPAWRVVKCPKQSGVVECGYYVMRFMRDIIMSTSTSIIQIMKDSPRAY 460

Query: 61  TQDDIDKVRTEWAEFVFTYLHIA 84
           TQD+ID +R+EWAEFV  ++H A
Sbjct: 461 TQDEIDCIRSEWAEFVGKHVHCA 483

[Close]

BLAST of Sed0014995.1 vs. NCBI nr
Match: KAA0051686.1 (transposon protein, putative, CACTA, En/Spm sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 1.9e-18
Identity = 44/83 (53.01%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 1    MLKTSFKQLKKKKSVWKPIKCPKQPGVVECGYYIMMYMREIVCQNTNSIIDVMNNAPSSY 60
            +++ SF  + KKK VW+ +KCPKQ GVV CGYY+M +MR+I+   + SII +M ++P  Y
Sbjct: 998  VVERSFNIMNKKKPVWRVVKCPKQSGVVACGYYVMRFMRDIIMSTSTSIIQIMKDSPRVY 1057

Query: 61   TQDDIDKVRTEWAEFVFTYLHIA 84
            TQDDID +R+EWAEFV  ++H A
Sbjct: 1058 TQDDIDCIRSEWAEFVGKHVHCA 1080

[Close]

BLAST of Sed0014995.1 vs. NCBI nr
Match: KAA0042507.1 (uncharacterized protein E6C27_scaffold5359G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 3.2e-18
Identity = 42/75 (56.00%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 9  LKKKKSVWKPIKCPKQPGVVECGYYIMMYMREIVCQNTNSIIDVMNNAPSSYTQDDIDKV 68
          + KKK  W+ +KCPKQ GVVECGYY+M +MR+I+   + SII +M ++P +YTQDDID +
Sbjct: 1  MNKKKPAWRVVKCPKQSGVVECGYYVMRFMRDIIMSTSTSIIQIMKDSPRAYTQDDIDCI 60

Query: 69 RTEWAEFVFTYLHIA 84
          R+EWAEFV  ++H A
Sbjct: 61 RSEWAEFVGKHVHCA 75

[Close]

BLAST of Sed0014995.1 vs. NCBI nr
Match: KAA0067083.1 (uncharacterized protein E6C27_scaffold38G001360 [Cucumis melo var. makuwa] >TYK26318.1 uncharacterized protein E5676_scaffold14G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 3.2e-18
Identity = 44/83 (53.01%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 1   MLKTSFKQLKKKKSVWKPIKCPKQPGVVECGYYIMMYMREIVCQNTNSIIDVMNNAPSSY 60
           +++ SF  +KKKK  W+ +KCPKQ G VECGYY+M +MR+I+   + SIID+M ++P +Y
Sbjct: 441 VVERSFNIMKKKKPNWRIVKCPKQSGKVECGYYVMRFMRDIILSMSTSIIDIMKDSPRTY 500

Query: 61  TQDDIDKVRTEWAEFVFTYLHIA 84
           TQDDID +R+EWAEFV  +++ A
Sbjct: 501 TQDDIDCIRSEWAEFVGKHVYCA 523

[Close]

BLAST of Sed0014995.1 vs. ExPASy TrEMBL
Match: A0A5D3C0Y2 (ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001330 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.3e-19
Identity = 44/79 (55.70%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 5   SFKQLKKKKSVWKPIKCPKQPGVVECGYYIMMYMREIVCQNTNSIIDVMNNAPSSYTQDD 64
           SF  + KKK  W+ +KCPKQ GVVECGYY+M +MR+I+   + SII +M ++P +YTQDD
Sbjct: 222 SFNIMNKKKPNWRVVKCPKQSGVVECGYYVMRFMRDIIMSTSTSIIQIMKDSPRAYTQDD 281

Query: 65  IDKVRTEWAEFVFTYLHIA 84
           ID +R+EWAEFV  ++H A
Sbjct: 282 IDCIRSEWAEFVGKHVHCA 300

[Close]

BLAST of Sed0014995.1 vs. ExPASy TrEMBL
Match: A0A5D3D2T0 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003090 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.9e-19
Identity = 43/83 (51.81%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 1   MLKTSFKQLKKKKSVWKPIKCPKQPGVVECGYYIMMYMREIVCQNTNSIIDVMNNAPSSY 60
           +++ SF  + KKK  W+ +KCPKQ GVVECGYY+M +MR+I+   + SII +M ++P +Y
Sbjct: 401 VVERSFNIMNKKKPAWRVVKCPKQSGVVECGYYVMRFMRDIIMSTSTSIIQIMKDSPRAY 460

Query: 61  TQDDIDKVRTEWAEFVFTYLHIA 84
           TQD+ID +R+EWAEFV  ++H A
Sbjct: 461 TQDEIDCIRSEWAEFVGKHVHCA 483

[Close]

BLAST of Sed0014995.1 vs. ExPASy TrEMBL
Match: A0A5A7UBV8 (Transposon protein, putative, CACTA, En/Spm sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G00650 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 9.0e-19
Identity = 44/83 (53.01%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 1    MLKTSFKQLKKKKSVWKPIKCPKQPGVVECGYYIMMYMREIVCQNTNSIIDVMNNAPSSY 60
            +++ SF  + KKK VW+ +KCPKQ GVV CGYY+M +MR+I+   + SII +M ++P  Y
Sbjct: 998  VVERSFNIMNKKKPVWRVVKCPKQSGVVACGYYVMRFMRDIIMSTSTSIIQIMKDSPRVY 1057

Query: 61   TQDDIDKVRTEWAEFVFTYLHIA 84
            TQDDID +R+EWAEFV  ++H A
Sbjct: 1058 TQDDIDCIRSEWAEFVGKHVHCA 1080

[Close]

BLAST of Sed0014995.1 vs. ExPASy TrEMBL
Match: A0A5D3DS26 (ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00990 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 44/83 (53.01%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 1   MLKTSFKQLKKKKSVWKPIKCPKQPGVVECGYYIMMYMREIVCQNTNSIIDVMNNAPSSY 60
           +++ SF  +KKKK  W+ +KCPKQ G VECGYY+M +MR+I+   + SIID+M ++P +Y
Sbjct: 441 VVERSFNIMKKKKPNWRIVKCPKQSGKVECGYYVMRFMRDIILSMSTSIIDIMKDSPRTY 500

Query: 61  TQDDIDKVRTEWAEFVFTYLHIA 84
           TQDDID +R+EWAEFV  +++ A
Sbjct: 501 TQDDIDCIRSEWAEFVGKHVYCA 523

[Close]

BLAST of Sed0014995.1 vs. ExPASy TrEMBL
Match: A0A5A7TLC3 (ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold5359G00010 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 42/75 (56.00%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 9  LKKKKSVWKPIKCPKQPGVVECGYYIMMYMREIVCQNTNSIIDVMNNAPSSYTQDDIDKV 68
          + KKK  W+ +KCPKQ GVVECGYY+M +MR+I+   + SII +M ++P +YTQDDID +
Sbjct: 1  MNKKKPAWRVVKCPKQSGVVECGYYVMRFMRDIIMSTSTSIIQIMKDSPRAYTQDDIDCI 60

Query: 69 RTEWAEFVFTYLHIA 84
          R+EWAEFV  ++H A
Sbjct: 61 RSEWAEFVGKHVHCA 75

The following BLAST results are available for this feature:

BLAST of Sed0014995.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04924.1	1.1e-18	55.70	hypothetical protein E5676_scaffold143G001330 [Cucumis melo var. makuwa]	[more]
TYK18000.1	1.4e-18	51.81	transposase [Cucumis melo var. makuwa]	[more]
KAA0051686.1	1.9e-18	53.01	transposon protein, putative, CACTA, En/Spm sub-class [Cucumis melo var. makuwa]	[more]
KAA0042507.1	3.2e-18	56.00	uncharacterized protein E6C27_scaffold5359G00010 [Cucumis melo var. makuwa]	[more]
KAA0067083.1	3.2e-18	53.01	uncharacterized protein E6C27_scaffold38G001360 [Cucumis melo var. makuwa] >TYK2...	[more]

BLAST of Sed0014995.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0014995.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C0Y2	5.3e-19	55.70	ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5D3D2T0	6.9e-19	51.81	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003090 P...	[more]
A0A5A7UBV8	9.0e-19	53.01	Transposon protein, putative, CACTA, En/Spm sub-class OS=Cucumis melo var. makuw...	[more]
A0A5D3DS26	1.5e-18	53.01	ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5A7TLC3	1.5e-18	56.00	ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of Sed0014995.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003653	Ulp1 protease family, C-terminal catalytic domain	PFAM	PF02902	Peptidase_C48	coord: 1..74 e-value: 1.3E-5 score: 25.2
None	No IPR available	GENE3D	1.10.418.20		coord: 1..81 e-value: 3.1E-8 score: 35.3
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	54001	Cysteine proteinases	coord: 7..77

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0014995	Sed0014995	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0014995.1-cds	Sed0014995.1-cds-LG09:31859513..31859608	CDS
Sed0014995.1-cds	Sed0014995.1-cds-LG09:31859687..31859782	CDS
Sed0014995.1-cds	Sed0014995.1-cds-LG09:31859867..31859915	CDS
Sed0014995.1-cds	Sed0014995.1-cds-LG09:31860340..31860350	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0014995.1-exon	Sed0014995.1-exon-LG09:31859513..31859608	exon
Sed0014995.1-exon	Sed0014995.1-exon-LG09:31859687..31859782	exon
Sed0014995.1-exon	Sed0014995.1-exon-LG09:31859867..31859915	exon
Sed0014995.1-exon	Sed0014995.1-exon-LG09:31860340..31860350	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0014995.1	Sed0014995.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity