Sed0014038.1 (mRNA) Chayote v1

Overview


Name	Sed0014038.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	protein RALF-like 33
Location	LG11: 3485910 .. 3489452 (-)
Sequence length	3543
RNA-Seq Expression	Sed0014038.1
Synteny	Sed0014038.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCACCAACTGGCTTCTTCACTTTACTGCTCGCTTTTTTCTATCTTAAAAAACCTCAGAAGAAGAACCCACCGACGAGTCGCCGGAGCAACCGCCGGAGTCGAAGAATCCGTCAATTCCGAGGAGTCATCCGAGAGATAAAGAGAGAGAAACTCGAGCTTGTTCTTGCATGTCAATGGCCGGAATCTATTCTCCGACCTTCTTCCTGATCTGCGCCGCCGTGTTTGTGGTCTTCAGCTGCTCCTCCACCGCCGTCCGCGGCGGCCTCGGGATCCACCACAGCCTCGAATCATGGATTCCTAGCCAATCGACCTGCAAAGGCTCCATTGCGGAGTGTTTCGGCGGAGAGGAGTTCGATTTCGATTCGGAGATCTGCCGCCGCATCTTGGCCACGAATCAGTACATCAGCTACGGCGCTCTGAGGCGGAACAGCGTGCCGTGCTCGAGACGCGGCGCGTCGTATTACAATTGCCAGCCCGGAGCTCAGGCCAATCCTTACCGCCGTGGATGCAGCGCCATTACCAGATGCAGGAGTTGAGTAATCTGTTTGTATCTCTCTGTTTAATATATCCTCTCTTTACATTTCAATGTTTATTGATCTTTTCTTAATTTTTTTTTTCTGTTTCTTTGAGACTGCTTTGATTGTTACACAAATTGAAAAGGGGAGATTGATTATATAGTTTCTTCGTTGTAAGTGATGAAAATTGTTGTGGTTAATTAATTATATGTCTTGGTGTTTGGATGAGTATAATTGCATGACTACTTATTTTGAGCCATTAGAATGAATAGTTATTTTGAGTGATTATAAATTGAGCAGCCATTAGATGAGTAGTTACTAAAAGATCGTTTGGATGTGGATTTTGGTAGAGGAGTCGCAGACAATAGCTCATTTAGATGAAATTTTTTGTAGAGGAGTAGCCAATAATTCGTTTGGATGAGAATTTTGATAAAGGAGTTACATAAATGAGTGGTTTTAAAATGAGGATTTATTTTTGAGTGGTTTGAAATGGGTGATTAGAAATGAGCAGTTACAAACTTACAAATTACAATAGCTCGTTTGGATATAATTTTTTGAAGAGGGGCCGTAAAAGCTCATTTGTAATAGCTCGTTAAATACTAAAAACAGTCTGCAAAGAAATGGAGGAAGAAGAAAGGCTGTATTAAGTTGGAATTAGGGAGAATTATGGATCCCATCGTGAAATTAAAGTATGAACAAATTAATTGTTGCTATAATAAGTATATTTCTCTTCTAGAAAATGTTAAAGATTGTGCTTTTGGTGTTGTTTTTGGGTTTTGATTAACTACACATGGCCAATTTCTTTCCATTTTGGGGTTTGTTAGGCTGATGAAAACCTTTCTTTTCATTTATTTGTTTTCTCCTTTTCTGTTCTGTTCTGCTTGTGGTTAAGAATCTTGAACTCTTTAGGAAAAGTATTTAGGGGGAAAAGTTTTCCCTGAGAATTCATTCTACTGATTTGATTCTTGGTGCTCTTGAATGGGCTATCATTCTATTGAGAAACCTTTCATGTTGAGGTTGGGTACTTTGCTTTGAATGTACTTTAAATTGACAACACAAATAGACATTAGATATCTACAAGTATCTATAAACATATGTATATATGTGCATTGATTGTAGTTGCACTTGGTTAAGATATTGAGGATAGTTATGCATTATATAAGCAAACCTACTTCCATGGATTGGCCTAATGACTGAATGTTTTTGAGTTGCAATTTCAAACTATGGTGAACCATCATGGAGTGGTTTAGTGGTCAAGACCGGCCTTAAGTAACTAAGATATGATTCTATTCATAGTGGCCACTTACCTTCCTTGACATCCAAGTGCTATAGGGTTAGACAATATGTCGTGTTAGAATAGTCGAGGTGTATATAAGTTGGCCCGGACACTCAATGATATTAAAAAAAGAACTAGGGTGGCGGTGGTTATCTACTTAGGATTTAAGTTTGTATTATGAGGCATCATGATGTGGATTGGGCAACATTTATATCTATATTAGAGTAAAGGTAAGGATATGTTTGTCTAAACTTGAAAGATGGAGAATATAAAGTTAAAAGTGTCATGAATATAAAAGAGAGTCCTTTATAATTGAAGGTATGATTAGGCTTCTTGGACAAGGGAAATAAATTTGGTTCAATTTTGAGAAGTGGTTGTGATGCTCTAGTTATTTGATTTGACATGCTGAGAAAAAAGCTAGGTGTTTGATGGATATTATGCCTATTTGAGTTTGGTATGATTTTGACAAGTGAATTTTATATTTCTTCTTTTCTTATAGTTTCAATGTCAATTTAAAAAAAAAACATGGCCCAGCAGTGTTTTTGAAAAAGGAAAAACCCAAATCTGGAAAGCCACACAATATATGCCAGATTCCATTTCCAACATTACCTATCAAACTCTACCCACCATGCTGTTTGATAATTTGATTGTGACAAAACATATCACATTTCTCTTCCCATTTAAGTTCAGTTCATATCTGATGTATATAAATCATATATATGTTTCGAGAAGGCTATGTCGAACTCGGACCCAGTTCCTTTATAGCCCTTTTGAGATATTACACAATTTCCTTTGGTTGAGTATGATTTAGCTGTTTGGTTGGAAAGGTAAGGTGTTTGTAGGATTTGAATCTGTTGCATAATTTTTTGATTTTGATTCAATGGATCGCAGATCTAACTTTTCCTGCTGGGATTTTTTTATTGTTTTCTTTTGGGATGTCGATCTCGATATATATGATATCGAGAGCGAGAACCGATGATTGAAACGGCCCAAAGAGAGCGACATCTACATGATATTCTCAGGGGAGAATTTATTTCCCTCGTGTTCTTCCATATAATGTTTGTTTGGTTCATGACTAACCCAGCTAATTAATGGTTGGGCACTGACACCTTGCAATAGCTTTTTTTTTTTCATAATAAAAGAAATTATCTCATGATTCATGAACACACTTATACTAGTTGAGTTATTGTTCATGTTGACATCATAAGAGTAACTTAACGGTTGCTCATTCTAGTTTTCTTTACTACTAGAAGCGAGTCACCTTTTAAGGGTCACTCTTCTCTTAGTTGTATGTCTTTCCATTTTTTATGATAAAGAGCGTTTTCCTTTTTCGGTCAATTTGTAATGGGTCATAGTTAGAATAAATTTAAACCATTATGGAAGGACTCAATTGGTGAGGACCTTGAGGGTGATTAAAGTGATGAGTTCACGTTTACTATTGATATTTTAATAATGTTCATCTTTAGTTTTAAGATAACAAAATGATATGCCTTTTTATACTTTACAAAATGTTGCTACCCAGGATCGAACGGGGGACCTTCAGTGTGTAAGACTGATGTGATAACCACTATACCATGGCAATCAGAGATATAGTACTATTGTCAGTAACAATTAAAGTTGAACAAAAATTCAACACGAGGATGACTTTGGACAATGTCGCTGGATTGAGGAGCTTGACTTTTTTTTTTTTTTTTTTTAATAATAAATATCATATATATATATATATTTTGAGATTACAATTGAGGGTGGAG

mRNA sequence

GTCACCAACTGGCTTCTTCACTTTACTGCTCGCTTTTTTCTATCTTAAAAAACCTCAGAAGAAGAACCCACCGACGAGTCGCCGGAGCAACCGCCGGAGTCGAAGAATCCGTCAATTCCGAGGAGTCATCCGAGAGATAAAGAGAGAGAAACTCGAGCTTGTTCTTGCATGTCAATGGCCGGAATCTATTCTCCGACCTTCTTCCTGATCTGCGCCGCCGTGTTTGTGGTCTTCAGCTGCTCCTCCACCGCCGTCCGCGGCGGCCTCGGGATCCACCACAGCCTCGAATCATGGATTCCTAGCCAATCGACCTGCAAAGGCTCCATTGCGGAGTGTTTCGGCGGAGAGGAGTTCGATTTCGATTCGGAGATCTGCCGCCGCATCTTGGCCACGAATCAGTACATCAGCTACGGCGCTCTGAGGCGGAACAGCGTGCCGTGCTCGAGACGCGGCGCGTCGTATTACAATTGCCAGCCCGGAGCTCAGGCCAATCCTTACCGCCGTGGATGCAGCGCCATTACCAGATGCAGGAGTTGAGTAATCTGTTTGTATCTCTCTGTTTAATATATCCTCTCTTTACATTTCAATGTTTATTGATCTTTTCTTAATTTTTTTTTTCTGTTTCTTTGAGACTGCTTTGATTGTTACACAAATTGAAAAGGGGAGATTGATTATATAGTTTCTTCGTTGTAAGTGATGAAAATTGTTGTGGTTAATTAATTATATGTCTTGGTGTTTGGATGAGTATAATTGCATGACTACTTATTTTGAGCCATTAGAATGAATAGTTATTTTGAGTGATTATAAATTGAGCAGCCATTAGATGAGTAGTTACTAAAAGATCGTTTGGATGTGGATTTTGGTAGAGGAGTCGCAGACAATAGCTCATTTAGATGAAATTTTTTGTAGAGGAGTAGCCAATAATTCGTTTGGATGAGAATTTTGATAAAGGAGTTACATAAATGAGTGGTTTTAAAATGAGGATTTATTTTTGAGTGGTTTGAAATGGGTGATTAGAAATGAGCAGTTACAAACTTACAAATTACAATAGCTCGTTTGGATATAATTTTTTGAAGAGGGGCCGTAAAAGCTCATTTGTAATAGCTCGTTAAATACTAAAAACAGTCTGCAAAGAAATGGAGGAAGAAGAAAGGCTGTATTAAGTTGGAATTAGGGAGAATTATGGATCCCATCGTGAAATTAAAGTATGAACAAATTAATTGTTGCTATAATAAGTATATTTCTCTTCTAGAAAATGTTAAAGATTGTGCTTTTGGTGTTGTTTTTGGGTTTTGATTAACTACACATGGCCAATTTCTTTCCATTTTGGGGTTTGTTAGGCTGATGAAAACCTTTCTTTTCATTTATTTGTTTTCTCCTTTTCTGTTCTGTTCTGCTTGTGGTTAAGAATCTTGAACTCTTTAGGAAAAGTATTTAGGGGGAAAAGTTTTCCCTGAGAATTCATTCTACTGATTTGATTCTTGGTGCTCTTGAATGGGCTATCATTCTATTGAGAAACCTTTCATGTTGAGGTTGGGTACTTTGCTTTGAATGTACTTTAAATTGACAACACAAATAGACATTAGATATCTACAAGTATCTATAAACATATGTATATATGTGCATTGATTGTAGTTGCACTTGGTTAAGATATTGAGGATAGTTATGCATTATATAAGCAAACCTACTTCCATGGATTGGCCTAATGACTGAATGTTTTTGAGTTGCAATTTCAAACTATGGTGAACCATCATGGAGTGGTTTAGTGGTCAAGACCGGCCTTAAGTAACTAAGATATGATTCTATTCATAGTGGCCACTTACCTTCCTTGACATCCAAGTGCTATAGGGTTAGACAATATGTCGTGTTAGAATAGTCGAGGTGTATATAAGTTGGCCCGGACACTCAATGATATTAAAAAAAGAACTAGGGTGGCGGTGGTTATCTACTTAGGATTTAAGTTTGTATTATGAGGCATCATGATGTGGATTGGGCAACATTTATATCTATATTAGAGTAAAGGTAAGGATATGTTTGTCTAAACTTGAAAGATGGAGAATATAAAGTTAAAAGTGTCATGAATATAAAAGAGAGTCCTTTATAATTGAAGGTATGATTAGGCTTCTTGGACAAGGGAAATAAATTTGGTTCAATTTTGAGAAGTGGTTGTGATGCTCTAGTTATTTGATTTGACATGCTGAGAAAAAAGCTAGGTGTTTGATGGATATTATGCCTATTTGAGTTTGGTATGATTTTGACAAGTGAATTTTATATTTCTTCTTTTCTTATAGTTTCAATGTCAATTTAAAAAAAAAACATGGCCCAGCAGTGTTTTTGAAAAAGGAAAAACCCAAATCTGGAAAGCCACACAATATATGCCAGATTCCATTTCCAACATTACCTATCAAACTCTACCCACCATGCTGTTTGATAATTTGATTGTGACAAAACATATCACATTTCTCTTCCCATTTAAGTTCAGTTCATATCTGATGTATATAAATCATATATATGTTTCGAGAAGGCTATGTCGAACTCGGACCCAGTTCCTTTATAGCCCTTTTGAGATATTACACAATTTCCTTTGGTTGAGTATGATTTAGCTGTTTGGTTGGAAAGGTAAGGTGTTTGTAGGATTTGAATCTGTTGCATAATTTTTTGATTTTGATTCAATGGATCGCAGATCTAACTTTTCCTGCTGGGATTTTTTTATTGTTTTCTTTTGGGATGTCGATCTCGATATATATGATATCGAGAGCGAGAACCGATGATTGAAACGGCCCAAAGAGAGCGACATCTACATGATATTCTCAGGGGAGAATTTATTTCCCTCGTGTTCTTCCATATAATGTTTGTTTGGTTCATGACTAACCCAGCTAATTAATGGTTGGGCACTGACACCTTGCAATAGCTTTTTTTTTTTCATAATAAAAGAAATTATCTCATGATTCATGAACACACTTATACTAGTTGAGTTATTGTTCATGTTGACATCATAAGAGTAACTTAACGGTTGCTCATTCTAGTTTTCTTTACTACTAGAAGCGAGTCACCTTTTAAGGGTCACTCTTCTCTTAGTTGTATGTCTTTCCATTTTTTATGATAAAGAGCGTTTTCCTTTTTCGGTCAATTTGTAATGGGTCATAGTTAGAATAAATTTAAACCATTATGGAAGGACTCAATTGGTGAGGACCTTGAGGGTGATTAAAGTGATGAGTTCACGTTTACTATTGATATTTTAATAATGTTCATCTTTAGTTTTAAGATAACAAAATGATATGCCTTTTTATACTTTACAAAATGTTGCTACCCAGGATCGAACGGGGGACCTTCAGTGTGTAAGACTGATGTGATAACCACTATACCATGGCAATCAGAGATATAGTACTATTGTCAGTAACAATTAAAGTTGAACAAAAATTCAACACGAGGATGACTTTGGACAATGTCGCTGGATTGAGGAGCTTGACTTTTTTTTTTTTTTTTTTTAATAATAAATATCATATATATATATATATTTTGAGATTACAATTGAGGGTGGAG

Coding sequence (CDS)

ATGTCAATGGCCGGAATCTATTCTCCGACCTTCTTCCTGATCTGCGCCGCCGTGTTTGTGGTCTTCAGCTGCTCCTCCACCGCCGTCCGCGGCGGCCTCGGGATCCACCACAGCCTCGAATCATGGATTCCTAGCCAATCGACCTGCAAAGGCTCCATTGCGGAGTGTTTCGGCGGAGAGGAGTTCGATTTCGATTCGGAGATCTGCCGCCGCATCTTGGCCACGAATCAGTACATCAGCTACGGCGCTCTGAGGCGGAACAGCGTGCCGTGCTCGAGACGCGGCGCGTCGTATTACAATTGCCAGCCCGGAGCTCAGGCCAATCCTTACCGCCGTGGATGCAGCGCCATTACCAGATGCAGGAGTTGA

Protein sequence

MSMAGIYSPTFFLICAAVFVVFSCSSTAVRGGLGIHHSLESWIPSQSTCKGSIAECFGGEEFDFDSEICRRILATNQYISYGALRRNSVPCSRRGASYYNCQPGAQANPYRRGCSAITRCRS

Homology

[Close]

BLAST of Sed0014038.1 vs. NCBI nr
Match: XP_038889183.1 (protein RALF-like 33 [Benincasa hispida])

HSP 1 Score: 223.4 bits (568), Expect = 1.1e-54
Identity = 108/122 (88.52%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 1   MSMAGIYSPTFFLICAAVFVVFSCSSTAVRGGLGIHHSLESWIPSQSTCKGSIAECFGGE 60
           M+MAG  SPTFFLICAAVFV+FSCSSTAV  GLGIHHSL +WIP+QSTCKGSIAECFGGE
Sbjct: 1   MAMAGFNSPTFFLICAAVFVIFSCSSTAVHAGLGIHHSL-AWIPNQSTCKGSIAECFGGE 60

Query: 61  EFDFDSEICRRILATNQYISYGALRRNSVPCSRRGASYYNCQPGAQANPYRRGCSAITRC 120
           EF+FDSEI RRILAT+QYISYGALRRN+VPCSRRGASYYNCQPGAQANPY RGCSAITRC
Sbjct: 61  EFEFDSEINRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRC 120

Query: 121 RS 123
           RS
Sbjct: 121 RS 121

[Close]

BLAST of Sed0014038.1 vs. NCBI nr
Match: XP_022966015.1 (protein RALF-like 33 [Cucurbita maxima] >XP_023537429.1 protein RALF-like 33 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 222.2 bits (565), Expect = 2.4e-54
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MSMAGIYSPTFFLICAAVFVVFSCSSTAVRGGLGIHHSLESWIPSQSTCKGSIAECFGGE 60
           M+MAG  S TFFLICAAVFVVFSCSSTAV GGLGIHHSL  WIP+QSTCKG+IAECFGGE
Sbjct: 1   MAMAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGIHHSL-GWIPNQSTCKGTIAECFGGE 60

Query: 61  EFDFDSEICRRILATNQYISYGALRRNSVPCSRRGASYYNCQPGAQANPYRRGCSAITRC 120
           EF+FDSEI RRILAT+QYISYGALRRN+VPCSRRGASYYNCQPGAQANPY RGCSAITRC
Sbjct: 61  EFEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRC 120

Query: 121 RS 123
           RS
Sbjct: 121 RS 121

[Close]

BLAST of Sed0014038.1 vs. NCBI nr
Match: XP_022937540.1 (protein RALF-like 33 [Cucurbita moschata])

HSP 1 Score: 219.2 bits (557), Expect = 2.0e-53
Identity = 107/122 (87.70%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 1   MSMAGIYSPTFFLICAAVFVVFSCSSTAVRGGLGIHHSLESWIPSQSTCKGSIAECFGGE 60
           M+MAG  S TFFLICAAVFVVFSCSSTAV GGLGI HSL  WIP+QSTCKG+IAECFGGE
Sbjct: 1   MAMAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGIQHSL-GWIPNQSTCKGTIAECFGGE 60

Query: 61  EFDFDSEICRRILATNQYISYGALRRNSVPCSRRGASYYNCQPGAQANPYRRGCSAITRC 120
           EF+FDSEI RRILAT+QYISYGALRRN+VPCSRRGASYYNCQPGAQANPY RGCSAITRC
Sbjct: 61  EFEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRC 120

Query: 121 RS 123
           RS
Sbjct: 121 RS 121

[Close]

BLAST of Sed0014038.1 vs. NCBI nr
Match: XP_022150733.1 (protein RALF-like 33 [Momordica charantia])

HSP 1 Score: 217.2 bits (552), Expect = 7.6e-53
Identity = 106/122 (86.89%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 1   MSMAGIYSPTFFLICAAVFVVFSCSSTAVRGGLGIHHSLESWIPSQSTCKGSIAECFGGE 60
           M+MAG +SPT FLICAAVFVVF+CSSTAV GGLGIHHSL +WIP QS+CKGSIAECFGGE
Sbjct: 1   MAMAGFHSPT-FLICAAVFVVFTCSSTAVHGGLGIHHSL-AWIPDQSSCKGSIAECFGGE 60

Query: 61  EFDFDSEICRRILATNQYISYGALRRNSVPCSRRGASYYNCQPGAQANPYRRGCSAITRC 120
           EF+FDSEI RRILAT+QYISYGAL+RN+VPCSRRGASYYNCQPGAQANPY RGCSAITRC
Sbjct: 61  EFEFDSEISRRILATSQYISYGALKRNTVPCSRRGASYYNCQPGAQANPYGRGCSAITRC 120

Query: 121 RS 123
           RS
Sbjct: 121 RS 120

[Close]

BLAST of Sed0014038.1 vs. NCBI nr
Match: KAG6586247.1 (Protein RALF-like 33, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 216.9 bits (551), Expect = 1.0e-52
Identity = 106/120 (88.33%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 3   MAGIYSPTFFLICAAVFVVFSCSSTAVRGGLGIHHSLESWIPSQSTCKGSIAECFGGEEF 62
           MAG  S TFFLICAAVFVVFSCSSTAV GGLGI HSL  WIP+QSTCKG+IAECFGGEEF
Sbjct: 1   MAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGIQHSL-GWIPNQSTCKGTIAECFGGEEF 60

Query: 63  DFDSEICRRILATNQYISYGALRRNSVPCSRRGASYYNCQPGAQANPYRRGCSAITRCRS 122
           +FDSEI RRILAT+QYISYGALRRN+VPCSRRGASYYNCQPGAQANPY RGCSAITRCRS
Sbjct: 61  EFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRCRS 119

[Close]

BLAST of Sed0014038.1 vs. ExPASy Swiss-Prot
Match: Q9SRY3 (Protein RALF-like 1 OS=Arabidopsis thaliana OX=3702 GN=RALF1 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-28
Identity = 70/116 (60.34%), Postives = 78/116 (67.24%), Query Frame = 0


Query: 10  TFFLICAAVFVVFSCSSTAVRGGLGIHHSLESWI---PSQSTCKGSIAECFGGEEFDFDS 69
           T FL    + VVF  SS  V+ G        +W     + S C GSIAEC G EE + DS
Sbjct: 6   TLFL-TLTILVVFIISSPPVQAGFANDLGGVAWATTGDNGSGCHGSIAECIGAEEEEMDS 65

Query: 70  EICRRILATNQYISYGALRRNSVPCSRRGASYYNCQPGAQANPYRRGCSAITRCRS 123
           EI RRILAT +YISY +L+RNSVPCSRRGASYYNCQ GAQANPY RGCS I RCRS
Sbjct: 66  EINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARCRS 120

[Close]

BLAST of Sed0014038.1 vs. ExPASy Swiss-Prot
Match: Q8L9P8 (Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-28
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 42  WIPSQSTCKGSIAEC---FGGEEFDFDSEICRRILATNQYISYGALRRNSVPCSRRGASY 101
           ++P +S C G+IAEC      EEF+ DSEI RRILAT +YISYGALRRN+VPCSRRGASY
Sbjct: 33  FVPIESKCNGTIAECSLSTAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASY 92

Query: 102 YNCQPGAQANPYRRGCSAITRCR 122
           YNC+ GAQANPY RGCSAITRCR
Sbjct: 93  YNCRRGAQANPYSRGCSAITRCR 115

[Close]

BLAST of Sed0014038.1 vs. ExPASy Swiss-Prot
Match: Q945T0 (Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.4e-28
Identity = 70/118 (59.32%), Postives = 83/118 (70.34%), Query Frame = 0


Query: 9   PTFFLICAAVFVVFSCSSTAVRGGLGIHHSLESWI-PSQS--TCKGSIAECFG-GEEFDF 68
           P+  ++C  +   F   S A  G  G +     W+ P++S   CKGSI EC    EEF+ 
Sbjct: 4   PSGLILCVLIGAFF--ISMAAAGDSGAY----DWVMPARSGGGCKGSIGECIAEEEEFEL 63

Query: 69  DSEICRRILATNQYISYGALRRNSVPCSRRGASYYNCQPGAQANPYRRGCSAITRCRS 123
           DSE  RRILAT +YISYGAL++NSVPCSRRGASYYNC+PGAQANPY RGCSAITRCRS
Sbjct: 64  DSESNRRILATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAITRCRS 115

[Close]

BLAST of Sed0014038.1 vs. ExPASy Swiss-Prot
Match: Q9LUS7 (Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.4e-27
Identity = 61/95 (64.21%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 44  PSQSTCKGSIAEC-------------FG----GEEFDFDSEICRRILATNQYISYGALRR 103
           P ++ C+G+IAEC             +G    GEEF+ DSEI RRILAT +YISYGALRR
Sbjct: 42  PFETECRGTIAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRR 101

Query: 104 NSVPCSRRGASYYNCQPGAQANPYRRGCSAITRCR 122
           N++PCSRRGASYYNC+ GAQANPY RGCSAITRCR
Sbjct: 102 NTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 136

[Close]

BLAST of Sed0014038.1 vs. ExPASy Swiss-Prot
Match: Q9MA62 (Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.4e-27
Identity = 59/76 (77.63%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 47  STCKGSIAECFG-GEEFDFDSEICRRILATNQYISYGALRRNSVPCSRRGASYYNCQPGA 106
           S C GSIAEC    EE +FDS+I RRILA  +YISYGA+RRNSVPCSRRGASYYNCQ GA
Sbjct: 43  SGCTGSIAECIAEEEEMEFDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGA 102

Query: 107 QANPYRRGCSAITRCR 122
           QANPY RGCS ITRCR
Sbjct: 103 QANPYSRGCSTITRCR 118

[Close]

BLAST of Sed0014038.1 vs. ExPASy TrEMBL
Match: A0A6J1HQE4 (protein RALF-like 33 OS=Cucurbita maxima OX=3661 GN=LOC111465728 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-54
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MSMAGIYSPTFFLICAAVFVVFSCSSTAVRGGLGIHHSLESWIPSQSTCKGSIAECFGGE 60
           M+MAG  S TFFLICAAVFVVFSCSSTAV GGLGIHHSL  WIP+QSTCKG+IAECFGGE
Sbjct: 1   MAMAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGIHHSL-GWIPNQSTCKGTIAECFGGE 60

Query: 61  EFDFDSEICRRILATNQYISYGALRRNSVPCSRRGASYYNCQPGAQANPYRRGCSAITRC 120
           EF+FDSEI RRILAT+QYISYGALRRN+VPCSRRGASYYNCQPGAQANPY RGCSAITRC
Sbjct: 61  EFEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRC 120

Query: 121 RS 123
           RS
Sbjct: 121 RS 121

[Close]

BLAST of Sed0014038.1 vs. ExPASy TrEMBL
Match: A0A6J1FH12 (protein RALF-like 33 OS=Cucurbita moschata OX=3662 GN=LOC111443916 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 9.7e-54
Identity = 107/122 (87.70%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 1   MSMAGIYSPTFFLICAAVFVVFSCSSTAVRGGLGIHHSLESWIPSQSTCKGSIAECFGGE 60
           M+MAG  S TFFLICAAVFVVFSCSSTAV GGLGI HSL  WIP+QSTCKG+IAECFGGE
Sbjct: 1   MAMAGFNSSTFFLICAAVFVVFSCSSTAVHGGLGIQHSL-GWIPNQSTCKGTIAECFGGE 60

Query: 61  EFDFDSEICRRILATNQYISYGALRRNSVPCSRRGASYYNCQPGAQANPYRRGCSAITRC 120
           EF+FDSEI RRILAT+QYISYGALRRN+VPCSRRGASYYNCQPGAQANPY RGCSAITRC
Sbjct: 61  EFEFDSEISRRILATSQYISYGALRRNTVPCSRRGASYYNCQPGAQANPYSRGCSAITRC 120

Query: 121 RS 123
           RS
Sbjct: 121 RS 121

[Close]

BLAST of Sed0014038.1 vs. ExPASy TrEMBL
Match: A0A6J1DA82 (protein RALF-like 33 OS=Momordica charantia OX=3673 GN=LOC111018792 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.7e-53
Identity = 106/122 (86.89%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 1   MSMAGIYSPTFFLICAAVFVVFSCSSTAVRGGLGIHHSLESWIPSQSTCKGSIAECFGGE 60
           M+MAG +SPT FLICAAVFVVF+CSSTAV GGLGIHHSL +WIP QS+CKGSIAECFGGE
Sbjct: 1   MAMAGFHSPT-FLICAAVFVVFTCSSTAVHGGLGIHHSL-AWIPDQSSCKGSIAECFGGE 60

Query: 61  EFDFDSEICRRILATNQYISYGALRRNSVPCSRRGASYYNCQPGAQANPYRRGCSAITRC 120
           EF+FDSEI RRILAT+QYISYGAL+RN+VPCSRRGASYYNCQPGAQANPY RGCSAITRC
Sbjct: 61  EFEFDSEISRRILATSQYISYGALKRNTVPCSRRGASYYNCQPGAQANPYGRGCSAITRC 120

Query: 121 RS 123
           RS
Sbjct: 121 RS 120

[Close]

BLAST of Sed0014038.1 vs. ExPASy TrEMBL
Match: A0A0A0LFW9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G031140 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.3e-53
Identity = 104/122 (85.25%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 1   MSMAGIYSPTFFLICAAVFVVFSCSSTAVRGGLGIHHSLESWIPSQSTCKGSIAECFGGE 60
           M+MAG  SPTFFLICAAVF++FSCSST V  GLGI HSL +WIP+QSTCKGSIAECFGGE
Sbjct: 1   MAMAGFNSPTFFLICAAVFLIFSCSSTTVHAGLGIQHSL-AWIPNQSTCKGSIAECFGGE 60

Query: 61  EFDFDSEICRRILATNQYISYGALRRNSVPCSRRGASYYNCQPGAQANPYRRGCSAITRC 120
           EF+FDSEI RRILAT+QYISYGALRRN+VPCSRRGASYYNCQPGAQANPY RGC+AITRC
Sbjct: 61  EFEFDSEINRRILATSQYISYGALRRNNVPCSRRGASYYNCQPGAQANPYSRGCNAITRC 120

Query: 121 RS 123
           RS
Sbjct: 121 RS 121

[Close]

BLAST of Sed0014038.1 vs. ExPASy TrEMBL
Match: A0A5A7TYI2 (Rapid ALkalinization Factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00530 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.5e-51
Identity = 102/122 (83.61%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 1   MSMAGIYSPTFFLICAAVFVVFSCSSTAVRGGLGIHHSLESWIPSQSTCKGSIAECFGGE 60
           M+MAG  SPTFFLI AAVF++FSCSSTAV  G+GI +SL +WIP+QSTCKGSIAECFGGE
Sbjct: 1   MAMAGFNSPTFFLISAAVFLIFSCSSTAVHAGIGIQNSL-AWIPNQSTCKGSIAECFGGE 60

Query: 61  EFDFDSEICRRILATNQYISYGALRRNSVPCSRRGASYYNCQPGAQANPYRRGCSAITRC 120
           EF+FDSEI RRILAT+QYISYGALRRN+VPCSRRGASYYNCQPGAQANPY RGC+AITRC
Sbjct: 61  EFEFDSEINRRILATSQYISYGALRRNNVPCSRRGASYYNCQPGAQANPYSRGCNAITRC 120

Query: 121 RS 123
           RS
Sbjct: 121 RS 121

[Close]

BLAST of Sed0014038.1 vs. TAIR 10
Match: AT1G02900.1 (rapid alkalinization factor 1 )

HSP 1 Score: 127.5 bits (319), Expect = 7.4e-30
Identity = 70/116 (60.34%), Postives = 78/116 (67.24%), Query Frame = 0


Query: 10  TFFLICAAVFVVFSCSSTAVRGGLGIHHSLESWI---PSQSTCKGSIAECFGGEEFDFDS 69
           T FL    + VVF  SS  V+ G        +W     + S C GSIAEC G EE + DS
Sbjct: 6   TLFL-TLTILVVFIISSPPVQAGFANDLGGVAWATTGDNGSGCHGSIAECIGAEEEEMDS 65

Query: 70  EICRRILATNQYISYGALRRNSVPCSRRGASYYNCQPGAQANPYRRGCSAITRCRS 123
           EI RRILAT +YISY +L+RNSVPCSRRGASYYNCQ GAQANPY RGCS I RCRS
Sbjct: 66  EINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARCRS 120

[Close]

BLAST of Sed0014038.1 vs. TAIR 10
Match: AT4G15800.1 (ralf-like 33 )

HSP 1 Score: 127.5 bits (319), Expect = 7.4e-30
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 42  WIPSQSTCKGSIAEC---FGGEEFDFDSEICRRILATNQYISYGALRRNSVPCSRRGASY 101
           ++P +S C G+IAEC      EEF+ DSEI RRILAT +YISYGALRRN+VPCSRRGASY
Sbjct: 33  FVPIESKCNGTIAECSLSTAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASY 92

Query: 102 YNCQPGAQANPYRRGCSAITRCR 122
           YNC+ GAQANPY RGCSAITRCR
Sbjct: 93  YNCRRGAQANPYSRGCSAITRCR 115

[Close]

BLAST of Sed0014038.1 vs. TAIR 10
Match: AT3G16570.1 (rapid alkalinization factor 23 )

HSP 1 Score: 122.5 bits (306), Expect = 2.4e-28
Identity = 61/95 (64.21%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 44  PSQSTCKGSIAEC-------------FG----GEEFDFDSEICRRILATNQYISYGALRR 103
           P ++ C+G+IAEC             +G    GEEF+ DSEI RRILAT +YISYGALRR
Sbjct: 42  PFETECRGTIAECSVSAALGDGGDLFYGGGEMGEEFEMDSEINRRILATRRYISYGALRR 101

Query: 104 NSVPCSRRGASYYNCQPGAQANPYRRGCSAITRCR 122
           N++PCSRRGASYYNC+ GAQANPY RGCSAITRCR
Sbjct: 102 NTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 136

[Close]

BLAST of Sed0014038.1 vs. TAIR 10
Match: AT3G05490.1 (ralf-like 22 )

HSP 1 Score: 122.1 bits (305), Expect = 3.1e-28
Identity = 59/76 (77.63%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 47  STCKGSIAECFG-GEEFDFDSEICRRILATNQYISYGALRRNSVPCSRRGASYYNCQPGA 106
           S C GSIAEC    EE +FDS+I RRILA  +YISYGA+RRNSVPCSRRGASYYNCQ GA
Sbjct: 43  SGCTGSIAECIAEEEEMEFDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGA 102

Query: 107 QANPYRRGCSAITRCR 122
           QANPY RGCS ITRCR
Sbjct: 103 QANPYSRGCSTITRCR 118

[Close]

BLAST of Sed0014038.1 vs. TAIR 10
Match: AT2G33775.1 (ralf-like 19 )

HSP 1 Score: 84.3 bits (207), Expect = 7.2e-17
Identity = 46/84 (54.76%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 41  SWIPSQSTCKGSIAECFGGE-EFDF--DSEICRRILATNQ-YISYGALRRNSVPCSRRGA 100
           +W  ++S   G    C G + E D+  DSE  RR LA  + YISYGALR+N+VPCSRRG 
Sbjct: 24  TWTLTKSCVNGQ--GCIGEDGELDYLMDSETNRRQLAARRSYISYGALRKNNVPCSRRGR 83

Query: 101 SYYNCQPGAQANPYRRGCSAITRC 121
           SYY+C+   +ANPYRRGCS IT C
Sbjct: 84  SYYDCKKRKRANPYRRGCSVITHC 105

The following BLAST results are available for this feature:

BLAST of Sed0014038.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889183.1	1.1e-54	88.52	protein RALF-like 33 [Benincasa hispida]	[more]
XP_022966015.1	2.4e-54	88.52	protein RALF-like 33 [Cucurbita maxima] >XP_023537429.1 protein RALF-like 33 [Cu...	[more]
XP_022937540.1	2.0e-53	87.70	protein RALF-like 33 [Cucurbita moschata]	[more]
XP_022150733.1	7.6e-53	86.89	protein RALF-like 33 [Momordica charantia]	[more]
KAG6586247.1	1.0e-52	88.33	Protein RALF-like 33, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Sed0014038.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRY3	1.0e-28	60.34	Protein RALF-like 1 OS=Arabidopsis thaliana OX=3702 GN=RALF1 PE=1 SV=1	[more]
Q8L9P8	1.0e-28	73.49	Protein RALF-like 33 OS=Arabidopsis thaliana OX=3702 GN=RALFL33 PE=2 SV=1	[more]
Q945T0	1.4e-28	59.32	Rapid alkalinization factor OS=Nicotiana tabacum OX=4097 GN=RALF PE=1 SV=1	[more]
Q9LUS7	3.4e-27	64.21	Rapid alkalinization factor 23 OS=Arabidopsis thaliana OX=3702 GN=RALF23 PE=1 SV...	[more]
Q9MA62	4.4e-27	77.63	Protein RALF-like 22 OS=Arabidopsis thaliana OX=3702 GN=RALFL22 PE=3 SV=1	[more]

BLAST of Sed0014038.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HQE4	1.1e-54	88.52	protein RALF-like 33 OS=Cucurbita maxima OX=3661 GN=LOC111465728 PE=3 SV=1	[more]
A0A6J1FH12	9.7e-54	87.70	protein RALF-like 33 OS=Cucurbita moschata OX=3662 GN=LOC111443916 PE=3 SV=1	[more]
A0A6J1DA82	3.7e-53	86.89	protein RALF-like 33 OS=Momordica charantia OX=3673 GN=LOC111018792 PE=3 SV=1	[more]
A0A0A0LFW9	6.3e-53	85.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G031140 PE=3 SV=1	[more]
A0A5A7TYI2	3.5e-51	83.61	Rapid ALkalinization Factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Sed0014038.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02900.1	7.4e-30	60.34	rapid alkalinization factor 1	[more]
AT4G15800.1	7.4e-30	73.49	ralf-like 33	[more]
AT3G16570.1	2.4e-28	64.21	rapid alkalinization factor 23	[more]
AT3G05490.1	3.1e-28	77.63	ralf-like 22	[more]
AT2G33775.1	7.2e-17	54.76	ralf-like 19	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 60..121 e-value: 3.7E-29 score: 101.5
None	No IPR available	PANTHER	PTHR33136	RAPID ALKALINIZATION FACTOR-LIKE	coord: 7..122
None	No IPR available	PANTHER	PTHR33136:SF50	PROTEIN RALF-LIKE 33	coord: 7..122

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0014038	Sed0014038	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0014038.1-three_prime_utr	Sed0014038.1-three_prime_utr-LG11:3485910..3488915	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0014038.1-exon	Sed0014038.1-exon-LG11:3485910..3489452	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0014038.1-cds	Sed0014038.1-cds-LG11:3488916..3489284	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0014038.1-five_prime_utr	Sed0014038.1-five_prime_utr-LG11:3489285..3489452	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0014038.1	Sed0014038.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019722	calcium-mediated signaling
cellular_component	GO:0005576	extracellular region