Sed0013778.1 (mRNA) Chayote v1

Overview


Name	Sed0013778.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	GLTSCR1 domain-containing protein
Location	LG05: 3561857 .. 3568293 (-)
Sequence length	1487
RNA-Seq Expression	Sed0013778.1
Synteny	Sed0013778.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCATATAGAATCTTTCTTCTCCACTCCGAACTCCATCGCCGATAGAAGAACCCATTTCCCCTCTTCATTCAGCAGAGTTCAAGAATCGATCAAAATGGACGAAGCTAAAGCAATGGCGGCTCTGCACCAACAACAAATGCTCATTCAACAGCAGAAACAGCAACAGCAACAGCAACAGCAACAAACTCAGCACCAACAATTTCTTCTTCTCCAGCAATTGCATAAACAACAGCAGGCTCAGCAACAAGCGGCTGCGATCTCCCGTTTTCCGTCCAATATCGACGCCCATTTGCGCCCGCCCGGTCTTCTTCTCCGCCCTGGATCCATTAATCTCCAACCAAACCCTAACCCTAATTCAACAGCGTCCGTTCCTAATCTGCAGTCTAACCCTAGCCCCAGTCAACCGTCGCCGCAGCAATTGATGTTGCAGCAGCAACAGCAACAGCAACAGCAGAGGGCAATGCGACCTGGGAACCAGGCCGAACTCCAGATGGCTTATCAGGATGCTTGGCGTGTTTGTCATCCTGATATCAAGCGCCCCTTTAGCTCCCTTGAAGATGCTTGCGAGAGGTTCGTTCTTTTCAAATGCGTGTTTTTGGTGTGTTCAGATTCTAAATCTTGTATAATTGTGTTTTAGAGCCTATTGCTTGATGGGATTTTGTTATTGTTTGGAAGTGTTAAGATTCACGTCGAAAAGAGTGTAGACCTCGTAGCAATATATAAGAAAGGTGAAGTACTCCCTCGTCACTGATTGGTTTTGGGATGACGAACAATTTTGACTGGCTGATTGCTTGTATTTATTGTTCTTTTAATTTCTGTTCAGATCATTAGTTGTCTGTTTCAGGGGGGCTTTTGTTAGTTAGTTTAGGAGCACTTAAGTTTGGATTCTAGTGTGAGTTTACTTAAAGATGGAACTTAATGGGTTGAAATGACACCCGTAGAAAAGGCAACTAGTCGAAATGAAAAATTGGCTCCCCGTGAATGTGATGCATCTTCTGCGGTAGATCTAGATTCGTGCAATTGTGAATTGTGTCATGCATAGTGCTTTGTAAGGGCAGGGCACTAAGGTGAAATAGTCTACTGGTGCTTAGGCAGCTAGGTGTTGGTTTCTTTGAGCTACTTGAGGAATGATAAGCATAGCACAAAGGGACCATGCCATGTTTTCTCATTTATATCACCCATCTTCTCTGAGAAATCATTCGTGGCTCATGTTTTGGGATCCTCTGGGCATTCTCCTTCCTTCTGTTTCGATTCAATCGTCTATTTTCTGATAGAGAAATAATGAACATCTAGGGTGTTGAAGTGTTGTTTTTAGTTCTTGAGAAGAGATCTTCGCTCTTGGCTCCCAATCCTTTCGATTGTTTTTCTTGTCTGTCGCTCTTTTGCGGATGGGTCATTTATCTCTTTGTTGTGGAAGGGGAAAGTTCCAAAGGTGGTTTTTTTCATTTGGTAGGTCATTATTATTGTTTATATCCGTGACCGTTAGGTGCATCCTCGACAATTGTCATGGAACATATTGTCTGAGCCTACAACATTTGGATGTGAAGGAAACTCATAGGAAATTAATTCCTAGGTAGGTGGCCACCATGGATTGAACCCATCTCCTCTTAGTTCTTTAAGGCTCTCTTGACCACTAGGCCACTTCATGATGGTTCATTTGGCAGGTCATTATTGAAAGAGTTAATACCTTAGATCGTCTTTCTAGAGGTGTGTTTGGACATCTTTCTTTGAGGTGTTGGTTTGTTTTGCAGTTTGCTAGTAAGAAATGCCTTTCGGAGATGATGGAGGAGTTCATTCTTCTCCATTTCAAGAAAATTTCAGATTTTTATGGCAGACTGAGATTTGTGCTATTTTTTGGGTTTATATGGTGAGAAATAATGGGACTCTTAGAGGGCTTGAGAGGAATCCGGATGATACTTGGTCCTTTGGCAGGTTCCATGTTTCTCCCTGGGTGTCGATGACACATTTATTTTGGCAGTTGCCCTTCTCCTACCTTTAACTATCATATGGTGTATGATTCCCATTCCCAAGGATTTCTCTAAGGCGAAAAGAGGAGGCAAAACCAAAAATTATGTACTTTGGAAGTTCACAATCTCTGCACTTCCATTACAATGATAAGGTTAATATGGTTATTTTTTAAGGAGTTTATGTTTTCAAATGAGAATCCTTATCTGGGACATTAGGAGTTCGCAAGACAAAGAATTCATGTCGGACACAGATTTTCAAACACTTCTCTTCTTGGAGATGAACCTATGTCCGACATGCCATTTTAAGTGTCATTTTTTTAAAATAATCGAACACGACTTAGAAATGCTTCAAACACATGTCGGGCACTAGTCGCACTATGATATTTAAACAACGGGTGTGGTCTTTGAACACAAATATTAAAGGCCCAAACTCAAAATAATTAATTCCATAGTTAACTAAATAATAACAAGGAAAAGACAAAAGACAAAAGAAACCTGAAAAGCAATTGTCTCACCCATTTTTCATGAAAAAAAACCGATCACCTTTCCTTTTCTTCACGGAAAAAAAACCAGTCTTCAGTTTTTGAAATACTCGTTTGTCGCAGTTGTTGCACAATCAACACTCAATTGTTAATAACTTGACGTTTTATGTTTTTTTAGTAGAGTACATTTAGTATTTTATGCTAAATGTATATTTACTAAAAAGTCAGCATATCCTCAACATATTCATGTTCTAGTTTTTAAGAAATTGACATATCGTCGTGTCTTATTGTGTTTGTGTCCATGCTTCATAGTTGCAAGCTATCTCTAAGAGATCTCTTGGAGGGAAACATGTATGGCTCAAACTCTGTTTTGGTTAATTTTTCAGAAACACAGTTTTGCAATTTGGCTCATCTTCTTACTAACTTCATTTTGGGATCCCACTTGATTGGCTCGCCCTCCCTTAATTTCCTTGGATTCTCTGATGATATTCTTGTAATGGGGAATGATCCATGATCTTTGATGGATGTGCTTTTTTGTCTCTTTCTCTTGATCTGAGACTTCATGGTTTTTCTTAAGAAAATTTATGTGCCTCTGACGTTTCTTAAAAGACATATAATGTTGGAAGATCTCCAGGAAGCAACATCCACGTTAGCCTTTTGAACTATCTGGGCAAAGAAAAACTGGACTTTCAAAATGTTGGAAGAACTCTTGAGGGACTTTGGTTCAATCCAGTGTTTCTTCTACTCGGTCCTCTCTCACGATTCTTTTTTTCTTCTCCAATTATAGCAATTCCTCAATTGTACCCTATTGAATTTTCTTTTAGTGCTGTCCCCTCTCTTGTCTTGGTTAGTTCTTCTGTATACTACATTTTACCTATGCAGTAGTTCTTGTTTCTTATCTTTTTTTTTTCAGAAAAAGTTTTCCGGGTGAAGATCTCCAATTTAAGGTGTATTAGAAGTGTTCTTGTCCCTCTCTTTCTATCATTTCCCATTCTTCATCTTCTGTTTGCTGAGTTACTAAAACCCCGTTTGATAACCATTTGGTTTTTCGTTTTTTGTTTATGAAATTTAAGCCTATTTCTACTCAAATTTCTTATAAGGTTGGGCCTAGGGCTCGATTGGGCCTAGGGCTCTATTTAACTATTACTTGGAGAATAAGTTAGTATTTTGTTATAATAGAGTGGGTTAGGTTAGGGTTTAGGCATCCAATTGTTAAATGAGTTATTGAGTGATTTATTGTAGGGCTCAAGAGATTCTCTTGAGAAGGGAGGTTCCAAGTTCCTATCAAAACTTGGTTTATCTTTATTCTTTTATCTTTTGATATAATCTAGATCCTGGATCATATCAATTGGTATCAGAGCCGTTTGATTCTTGGTTGTAGAGATGGATCAGGAAGAGGTTCGTTTATTTCGAGAGGCGTTGCTAAGTTTGATGGCCTCGGTTGGTTCTCTAAGAAAAGAAATCAGAGAAGAGGTAGCTTCAATGAAAGAAGATTTCAGAAAAATGAGGGAGAGCTGCATTGACCTAAATAGTTCTCTTAGAGAGCTCAAAGAGGAAATTATTATGGAAGAAAAAGTGACGGCTAGGGTTTTTACACCGCCACCTCCGCCGCCACCACCGCTGCCACCTCTGCCGCCGCCACCGCTACCGCCATTGCCACCACCACTGCCATCGTTTCCACCGCTGATGCCACCGACGCCGCTGCTTCACAAGACCTGACGCGCCATCACACACTGCGAAAAAAAAATTCATTTTTTTTATTTTTCTATTTTCATGTATGCCCACCTTGAGGACAAGGTGCTTTAAAGGGGCGGGTATTGATAAGGTTGGGCCTAGGGCTCGGTTGGGCCTAGGGCTCTATTTAGCTATTACTTGGAGAATAAGTTAGTATTTTGTTATAAATAGAGTGGGTTAGGTTAGGGTTTAGGCATCCAATTGTTAAATGAGTTATTAAGTGATTTATTGTAGGGCTCAAGAGATTCTCTTGAGAAGGGAGGTTCCAAGTTCTTATCAAAACTTGGTTTATCTTTATTCTTTTATCTTTTGATATAATCTAGATTCTGGATCATATCAATTTCCTACCATGTGCTCCATCTTTCCTACAATGTATCCATATTTCTTTAAGAAAGTAGATAAAGACTAACCAAATTTCAAAAACAAAAATAAGCTTTTGGAAGCTACTTTTTTTGTTTCCAAATTTTGGTTTTGTTTATTAAAATATAGGTAAGATGGAGATATCCAAATAAGGAAAAAATGTATAGAAAGGTAATTGTTGTAGGCTTAAATTTCATAAACAAAAAACGAAAAACAAAATGGTTACAAACGTAGCCTAATTTATAATATTATTCATTACCGTGGACAATCAATCATTCTTGTGATTTGTACTGTACTTAGTCCCCGTCAGGTGGTGGTTATTTATAACTGGGAAGAACTTCAGCTATCTCTGTATGGGACAATGGCTGCCAATAGATGTCCACAATTTCTTTTATTATTATATTTTTTAGAAATTGGAAACCAACCTGTTTTATTATTACTTATGTACAGGGCTTTTCGCATGTAGCTATCTGTAGCACAAAATTTTTCTGTTTCTCTATAATTGAGTTTCTCAGTCTATCTCTAATACATCAAGATGTAGAAAGAATGACAATCTTCATACTAACTACCTATTACCCTTTTTTCTTTTAATTTTGAAACAATAAATTTCATTGATGAAGGAAGAATTACAAAGTTATCCAATTCCTATTGAAACATAGTTACAAGTCCCCTATGTGATAAGAGTGGAGAGAGAATAATCACAAAAAACGTTAAATAAGTTGTAGATTCAATAAGTTGTAAATTTTAAAAATTCATTGATAGTTAGAATAGATACATAGGTTTGGTATCCGTTGTTAATTATAGATAGTTCTACAAGGTCTTTGCCTATTCCTTCTATCACTTGGTTGTTTGTATGAGTGGAAAAGAGCCTGGATTACTCGAAGTGTTGGGAGTTGTAAGCTTCATAGTATTGGTTTCTCCATATTCTTGTCACATTTTAATGATTTATTCATGCATTGTGCAAACAAATTGTGCAGGCTGCTTCCATATCATGTGGTGGCTGACTATGAAGCTGAAGAAGACGATAGAATCCTCGACTCGGATCCAACTGGCCAAATTCTGTCGCGCTCCCAGCAGTGGGACCATAACATCTCGGCCAAAATTTCTGAATTCATTGCCACTTTTGAGAAGCAGGTGTTGGCCTTCAACATCATAACTCGAAAAAGAGCACTAGGAGAGTTCCGTTCTGAAGAAAGATTGATGTTTGAACAAGCCCTTATGCAAGAAGAGAAGCGGAACCTTCTGGAACTAAAAGCTGAGATTGAATTGAGAAAGGCTGGAAAAGAGACTCATGATGCCAAAATGCGGATGGCGGCAATGATGCAGACAGAGCCAAAGGCTGAACCACAGGCTAATGAAATGATGGTTCGAGGTGCCATGAGAGCAGGTGCTCACGTCGGGTCCCAAACTGGCGACGTTCCAGTTGGCCATGGTGTTGCAGAGCAGGAGCAAGTTCATCCAAATGAAATGATCAATGGATGGGGAAACAACACACAGGGCGATGATAAGGAAGCATCAGAGGACCTATTGAATGACGAGGAAGCTGAGAATGGCGATGCGGGCATGCACGATAGTTGGCGCGAAGCGGGGGAGTTTGATCTGAACACGAGATGAAATGTTGGCGAACCAGCTTAACAATAGAGTTCAAGCGAAGTAGATCAGTTTTCGCCAATCACAGAGGATTGCTTTGTCGACTGTGCCTGAGGAACAAGCATTCAAAAGCCAAATGAACATGTATTTACTTGTACGTTGCTTGGTCAATTACATGTTTGATGACGGCTACATTGGATCTTTGAGTAGTAAATACTTGTATTACTTGCACTTACGTATTGATCATAAAACTACTACCGTTTCCAAATAGTAATGTGCTTGATTTAAAAAAGCAGTATGGTG

mRNA sequence

GGCATATAGAATCTTTCTTCTCCACTCCGAACTCCATCGCCGATAGAAGAACCCATTTCCCCTCTTCATTCAGCAGAGTTCAAGAATCGATCAAAATGGACGAAGCTAAAGCAATGGCGGCTCTGCACCAACAACAAATGCTCATTCAACAGCAGAAACAGCAACAGCAACAGCAACAGCAACAAACTCAGCACCAACAATTTCTTCTTCTCCAGCAATTGCATAAACAACAGCAGGCTCAGCAACAAGCGGCTGCGATCTCCCGTTTTCCGTCCAATATCGACGCCCATTTGCGCCCGCCCGGTCTTCTTCTCCGCCCTGGATCCATTAATCTCCAACCAAACCCTAACCCTAATTCAACAGCGTCCGTTCCTAATCTGCAGTCTAACCCTAGCCCCAGTCAACCGTCGCCGCAGCAATTGATGTTGCAGCAGCAACAGCAACAGCAACAGCAGAGGGCAATGCGACCTGGGAACCAGGCCGAACTCCAGATGGCTTATCAGGATGCTTGGCGTGTTTGTCATCCTGATATCAAGCGCCCCTTTAGCTCCCTTGAAGATGCTTGCGAGAGGCTGCTTCCATATCATGTGGTGGCTGACTATGAAGCTGAAGAAGACGATAGAATCCTCGACTCGGATCCAACTGGCCAAATTCTGTCGCGCTCCCAGCAGTGGGACCATAACATCTCGGCCAAAATTTCTGAATTCATTGCCACTTTTGAGAAGCAGGTGTTGGCCTTCAACATCATAACTCGAAAAAGAGCACTAGGAGAGTTCCGTTCTGAAGAAAGATTGATGTTTGAACAAGCCCTTATGCAAGAAGAGAAGCGGAACCTTCTGGAACTAAAAGCTGAGATTGAATTGAGAAAGGCTGGAAAAGAGACTCATGATGCCAAAATGCGGATGGCGGCAATGATGCAGACAGAGCCAAAGGCTGAACCACAGGCTAATGAAATGATGGTTCGAGGTGCCATGAGAGCAGGTGCTCACGTCGGGTCCCAAACTGGCGACGTTCCAGTTGGCCATGGTGTTGCAGAGCAGGAGCAAGTTCATCCAAATGAAATGATCAATGGATGGGGAAACAACACACAGGGCGATGATAAGGAAGCATCAGAGGACCTATTGAATGACGAGGAAGCTGAGAATGGCGATGCGGGCATGCACGATAGTTGGCGCGAAGCGGGGGAGTTTGATCTGAACACGAGATGAAATGTTGGCGAACCAGCTTAACAATAGAGTTCAAGCGAAGTAGATCAGTTTTCGCCAATCACAGAGGATTGCTTTGTCGACTGTGCCTGAGGAACAAGCATTCAAAAGCCAAATGAACATGTATTTACTTGTACGTTGCTTGGTCAATTACATGTTTGATGACGGCTACATTGGATCTTTGAGTAGTAAATACTTGTATTACTTGCACTTACGTATTGATCATAAAACTACTACCGTTTCCAAATAGTAATGTGCTTGATTTAAAAAAGCAGTATGGTG

Coding sequence (CDS)

ATGGACGAAGCTAAAGCAATGGCGGCTCTGCACCAACAACAAATGCTCATTCAACAGCAGAAACAGCAACAGCAACAGCAACAGCAACAAACTCAGCACCAACAATTTCTTCTTCTCCAGCAATTGCATAAACAACAGCAGGCTCAGCAACAAGCGGCTGCGATCTCCCGTTTTCCGTCCAATATCGACGCCCATTTGCGCCCGCCCGGTCTTCTTCTCCGCCCTGGATCCATTAATCTCCAACCAAACCCTAACCCTAATTCAACAGCGTCCGTTCCTAATCTGCAGTCTAACCCTAGCCCCAGTCAACCGTCGCCGCAGCAATTGATGTTGCAGCAGCAACAGCAACAGCAACAGCAGAGGGCAATGCGACCTGGGAACCAGGCCGAACTCCAGATGGCTTATCAGGATGCTTGGCGTGTTTGTCATCCTGATATCAAGCGCCCCTTTAGCTCCCTTGAAGATGCTTGCGAGAGGCTGCTTCCATATCATGTGGTGGCTGACTATGAAGCTGAAGAAGACGATAGAATCCTCGACTCGGATCCAACTGGCCAAATTCTGTCGCGCTCCCAGCAGTGGGACCATAACATCTCGGCCAAAATTTCTGAATTCATTGCCACTTTTGAGAAGCAGGTGTTGGCCTTCAACATCATAACTCGAAAAAGAGCACTAGGAGAGTTCCGTTCTGAAGAAAGATTGATGTTTGAACAAGCCCTTATGCAAGAAGAGAAGCGGAACCTTCTGGAACTAAAAGCTGAGATTGAATTGAGAAAGGCTGGAAAAGAGACTCATGATGCCAAAATGCGGATGGCGGCAATGATGCAGACAGAGCCAAAGGCTGAACCACAGGCTAATGAAATGATGGTTCGAGGTGCCATGAGAGCAGGTGCTCACGTCGGGTCCCAAACTGGCGACGTTCCAGTTGGCCATGGTGTTGCAGAGCAGGAGCAAGTTCATCCAAATGAAATGATCAATGGATGGGGAAACAACACACAGGGCGATGATAAGGAAGCATCAGAGGACCTATTGAATGACGAGGAAGCTGAGAATGGCGATGCGGGCATGCACGATAGTTGGCGCGAAGCGGGGGAGTTTGATCTGAACACGAGATGA

Protein sequence

MDEAKAMAALHQQQMLIQQQKQQQQQQQQQTQHQQFLLLQQLHKQQQAQQQAAAISRFPSNIDAHLRPPGLLLRPGSINLQPNPNPNSTASVPNLQSNPSPSQPSPQQLMLQQQQQQQQQRAMRPGNQAELQMAYQDAWRVCHPDIKRPFSSLEDACERLLPYHVVADYEAEEDDRILDSDPTGQILSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSEERLMFEQALMQEEKRNLLELKAEIELRKAGKETHDAKMRMAAMMQTEPKAEPQANEMMVRGAMRAGAHVGSQTGDVPVGHGVAEQEQVHPNEMINGWGNNTQGDDKEASEDLLNDEEAENGDAGMHDSWREAGEFDLNTR

Homology

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BLAST of Sed0013778.1 vs. NCBI nr
Match: XP_038887907.1 (involucrin [Benincasa hispida])

HSP 1 Score: 591.7 bits (1524), Expect = 4.5e-165
Identity = 329/373 (88.20%), Postives = 340/373 (91.15%), Query Frame = 0


Query: 1   MDEAKAMAALHQQQMLIQQQKQQQQQQQQQTQHQQFLLLQQLHKQQQAQQQAAAISRFPS 60
           MDEAKA+AA HQQQ+L+QQ KQQQQQQQQ  QHQQFLLLQQ  KQQQAQQQAAAISRFPS
Sbjct: 1   MDEAKALAAQHQQQLLLQQHKQQQQQQQQTQQHQQFLLLQQFQKQQQAQQQAAAISRFPS 60

Query: 61  NIDAHLRPPGLLLRPGSINLQPNPNPNSTASVPNLQSNPSPSQPSPQQLMLQQQQQQQ-Q 120
           NIDAHLRPPGL LRPGSINL  NPNPN TASV NLQSNPSPSQP  QQL  QQQQQ Q  
Sbjct: 61  NIDAHLRPPGLHLRPGSINLHQNPNPNPTASVSNLQSNPSPSQPPSQQLQQQQQQQHQLP 120

Query: 121 QRAMRPGNQAELQMAYQDAWRVCHPDIKRPFSSLEDACERLLPYHVVADYEAEEDDRILD 180
           QR MRPGNQAELQMAYQDAWRVCHPDIKRPF SLEDACERLLPYHVVADYEAEEDDRILD
Sbjct: 121 QRVMRPGNQAELQMAYQDAWRVCHPDIKRPFGSLEDACERLLPYHVVADYEAEEDDRILD 180

Query: 181 SDPTGQILSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSEERLMFEQAL 240
           SDPTGQ+LSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSEERLMFEQAL
Sbjct: 181 SDPTGQMLSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSEERLMFEQAL 240

Query: 241 MQEEKRNLLELKAEIELR-KAGKETHDAKMRMAAMMQT-EPKAEPQANEMMVRGAMRAGA 300
           MQEEKRNLLELKAEIELR KA KE HDAK RMAAMMQT + ++EPQANEMMVR +MR GA
Sbjct: 241 MQEEKRNLLELKAEIELRGKASKEAHDAKTRMAAMMQTDQTRSEPQANEMMVRASMRTGA 300

Query: 301 HVGSQTGDVPVGHGVAEQEQVHPNEMINGWGNNTQGDDKEASEDLLNDEEAENGDAGMHD 360
           HVGSQ+ DVPVGHG  EQEQVHPNEMINGWGNNTQGD+KEASEDLLNDEEAENGD GMHD
Sbjct: 301 HVGSQSSDVPVGHGGGEQEQVHPNEMINGWGNNTQGDEKEASEDLLNDEEAENGDTGMHD 360

Query: 361 SWREAGEFDLNTR 371
           SWRE GEFDLN+R
Sbjct: 361 SWREVGEFDLNSR 373

[Close]

BLAST of Sed0013778.1 vs. NCBI nr
Match: XP_023533474.1 (SWI/SNF chromatin-remodeling complex subunit SNF5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 582.0 bits (1499), Expect = 3.6e-162
Identity = 334/384 (86.98%), Postives = 343/384 (89.32%), Query Frame = 0


Query: 1   MDEAK--AMAALHQQQMLIQQQKQQQQQQQQ-QTQHQQFLLLQQLHKQQQAQQQAAAISR 60
           MDEAK  AMAA HQQQ+L+QQ KQQQQQQQQ Q QHQQFLLLQQL KQQQAQQQAAAISR
Sbjct: 17  MDEAKATAMAAQHQQQLLLQQHKQQQQQQQQHQQQHQQFLLLQQLQKQQQAQQQAAAISR 76

Query: 61  FPSNIDAHLRPPGLLLRPGSINLQPNPNPNSTASVPNLQSNPSPSQPSPQQLMLQQQQQQ 120
           FPSNIDAHLRPPGL LRPGSINL  N NPN TASVPNLQSNPSP+QP  QQL  Q+QQQQ
Sbjct: 77  FPSNIDAHLRPPGLHLRPGSINLHQNLNPNPTASVPNLQSNPSPTQPPSQQLQQQKQQQQ 136

Query: 121 Q-------QQRAMRPGNQAELQMAYQDAWRVCHPDIKRPFSSLEDACERLLPYHVVADYE 180
           Q       QQRAMR GNQAELQMAYQDAWRVCHPDIKRPF SLEDACERLLPYHVVADYE
Sbjct: 137 QQQQQHQLQQRAMRTGNQAELQMAYQDAWRVCHPDIKRPFGSLEDACERLLPYHVVADYE 196

Query: 181 AEEDDRILDSDPTGQILSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSE 240
           AEEDDRILDSDPTGQ+LSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKR LGEFRSE
Sbjct: 197 AEEDDRILDSDPTGQMLSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRTLGEFRSE 256

Query: 241 ERLMFEQALMQEEKRNLLELKAEIELR-KAGKETHDAKMRMAAMMQTE--PKAEPQANEM 300
           ERLMFEQALMQEEKRNLLELKAEIELR KAG+E HDAKMRMAAMMQT    +AEPQANEM
Sbjct: 257 ERLMFEQALMQEEKRNLLELKAEIELRGKAGREAHDAKMRMAAMMQTTDLTRAEPQANEM 316

Query: 301 MVRGAMRAGAHVGSQTGDVPVGHGVAEQEQVHPNEMINGWG-NNTQGDDKEASEDLLNDE 360
           MVRG MR GAHVGSQ+ DV VGHGV EQEQVHPNEM+NGWG NNTQGDDKEASEDLLNDE
Sbjct: 317 MVRGPMRTGAHVGSQSSDVRVGHGVGEQEQVHPNEMVNGWGNNNTQGDDKEASEDLLNDE 376

Query: 361 EAENGDAGMHDSWREAGEFDLNTR 371
           EAE GD GMHDSWRE GEFDLNTR
Sbjct: 377 EAEKGDTGMHDSWREVGEFDLNTR 400

[Close]

BLAST of Sed0013778.1 vs. NCBI nr
Match: XP_022958641.1 (putative mediator of RNA polymerase II transcription subunit 26 [Cucurbita moschata])

HSP 1 Score: 581.3 bits (1497), Expect = 6.1e-162
Identity = 333/384 (86.72%), Postives = 343/384 (89.32%), Query Frame = 0


Query: 1   MDEAK--AMAALHQQQMLIQQQKQQQQQQQQQT-QHQQFLLLQQLHKQQQAQQQAAAISR 60
           MDEAK  AMAA HQQQ+L+QQ KQQQQQQQQQT QHQQFLLLQQL KQQQAQQQAAAISR
Sbjct: 17  MDEAKATAMAAQHQQQLLLQQHKQQQQQQQQQTQQHQQFLLLQQLQKQQQAQQQAAAISR 76

Query: 61  FPSNIDAHLRPPGLLLRPGSINLQPNPNPNSTASVPNLQSNPSPSQPSPQQLMLQQQQQQ 120
           FPSNIDAHLRPPGL LRPGSINL  N NPN  ASVPNLQSNPSP+QP  QQL  Q+QQQQ
Sbjct: 77  FPSNIDAHLRPPGLHLRPGSINLHQNLNPNPAASVPNLQSNPSPTQPPSQQLQQQKQQQQ 136

Query: 121 Q-------QQRAMRPGNQAELQMAYQDAWRVCHPDIKRPFSSLEDACERLLPYHVVADYE 180
           Q       QQRAMR GNQAELQMAYQDAWRVCHPDIKRPF SLEDACERLLPYHVVADYE
Sbjct: 137 QQQQQHQLQQRAMRTGNQAELQMAYQDAWRVCHPDIKRPFGSLEDACERLLPYHVVADYE 196

Query: 181 AEEDDRILDSDPTGQILSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSE 240
           AEEDDRILDSDPTGQ+LSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKR LGEFRSE
Sbjct: 197 AEEDDRILDSDPTGQMLSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRTLGEFRSE 256

Query: 241 ERLMFEQALMQEEKRNLLELKAEIELR-KAGKETHDAKMRMAAMMQTE--PKAEPQANEM 300
           ERLMFEQALMQEEKRNLLELKAEIELR KAG+E HDAKMRMAAMMQT    +AEPQANEM
Sbjct: 257 ERLMFEQALMQEEKRNLLELKAEIELRGKAGREAHDAKMRMAAMMQTTDLTRAEPQANEM 316

Query: 301 MVRGAMRAGAHVGSQTGDVPVGHGVAEQEQVHPNEMINGWG-NNTQGDDKEASEDLLNDE 360
           MVRG +R GAHVGSQ+ DV VGH V EQEQVHPNEM+NGWG NNTQGDDKEASEDLLNDE
Sbjct: 317 MVRGPLRTGAHVGSQSSDVRVGHSVGEQEQVHPNEMVNGWGNNNTQGDDKEASEDLLNDE 376

Query: 361 EAENGDAGMHDSWREAGEFDLNTR 371
           EAENGD GMHDSWRE GEFDLNTR
Sbjct: 377 EAENGDTGMHDSWREVGEFDLNTR 400

[Close]

BLAST of Sed0013778.1 vs. NCBI nr
Match: XP_008449378.1 (PREDICTED: bromodomain-containing protein DDB_G0280777 [Cucumis melo])

HSP 1 Score: 579.3 bits (1492), Expect = 2.3e-161
Identity = 326/375 (86.93%), Postives = 338/375 (90.13%), Query Frame = 0


Query: 1   MDEAKAMAALHQQQMLIQQQKQQQQQQQQQTQHQQFLLLQQLHKQQQAQQQAAAISRFPS 60
           MDEAKAMAA HQQQ+L+QQ KQQQQQQQQ  QHQQFLLLQQL KQQQAQ QAAAISRFPS
Sbjct: 1   MDEAKAMAAQHQQQLLLQQHKQQQQQQQQTQQHQQFLLLQQLQKQQQAQHQAAAISRFPS 60

Query: 61  NIDAHLRPPGLLLRPGSINLQPNPNPNSTASVPNLQSNPSPSQPSPQQLMLQQQQQQQ-- 120
           NIDAHLRPPGL LRPGSINL  NPNPN TASV NLQSNPSPSQP  QQL  QQQQQ Q  
Sbjct: 61  NIDAHLRPPGLHLRPGSINLHQNPNPNPTASVSNLQSNPSPSQPPSQQLQQQQQQQHQLQ 120

Query: 121 -QQRAMRPGNQAELQMAYQDAWRVCHPDIKRPFSSLEDACERLLPYHVVADYEAEEDDRI 180
            QQRAMRPGNQAELQMAYQDAWRVCHPDIKRPF SLEDACERLLPYHVVADYEAEEDDRI
Sbjct: 121 LQQRAMRPGNQAELQMAYQDAWRVCHPDIKRPFGSLEDACERLLPYHVVADYEAEEDDRI 180

Query: 181 LDSDPTGQILSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSEERLMFEQ 240
           LDSDPTGQ+LSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSEERLMFEQ
Sbjct: 181 LDSDPTGQMLSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSEERLMFEQ 240

Query: 241 ALMQEEKRNLLELKAEIELR-KAGKETHDAKMRMAAMMQT-EPKAEPQANEMMVRGAMRA 300
           ALMQEEKRNL ELKAEIELR KA KE HDAK RMAAMMQT + ++EPQANEMM+R +MR 
Sbjct: 241 ALMQEEKRNLQELKAEIELRGKASKEAHDAKTRMAAMMQTDQTRSEPQANEMMIRASMRT 300

Query: 301 GAHVGSQTGDVPVGHGVAEQEQVHPNEMINGWGNNTQGDDKEASEDLLNDEEAENGDAGM 360
           GAHVGSQ+ DVPVG    +QEQ HP+EMINGWGNNTQGD+KEASEDLLNDEEAENGD GM
Sbjct: 301 GAHVGSQSSDVPVG----DQEQPHPSEMINGWGNNTQGDEKEASEDLLNDEEAENGDTGM 360

Query: 361 HDSWREAGEFDLNTR 371
           HDSWRE GEFDLNTR
Sbjct: 361 HDSWREVGEFDLNTR 371

[Close]

BLAST of Sed0013778.1 vs. NCBI nr
Match: XP_004140082.2 (putative uncharacterized protein DDB_G0271606 [Cucumis sativus])

HSP 1 Score: 577.8 bits (1488), Expect = 6.7e-161
Identity = 325/377 (86.21%), Postives = 339/377 (89.92%), Query Frame = 0


Query: 1   MDEAKAMAALHQQQMLIQQQKQQQQQQQQQTQHQQFLLLQQLHKQQQAQQQAAAISRFPS 60
           MDEAKAMAA HQQQ+L+QQ KQQQQQQQQ  QHQQFLLLQQL KQQQAQ QAAAISRFPS
Sbjct: 1   MDEAKAMAAQHQQQLLLQQHKQQQQQQQQTQQHQQFLLLQQLQKQQQAQHQAAAISRFPS 60

Query: 61  NIDAHLRPPGLLLRPGSINLQPNPNPNSTASVPNLQSNPSPSQPSPQQLMLQQQQQQQ-- 120
           NIDAHLRPPGL LRPGSINL  NPNPN TASV NLQ+NPSPSQP  QQL  QQQQQQQ  
Sbjct: 61  NIDAHLRPPGLHLRPGSINLHQNPNPNPTASVSNLQTNPSPSQPPSQQLQQQQQQQQQHQ 120

Query: 121 ---QQRAMRPGNQAELQMAYQDAWRVCHPDIKRPFSSLEDACERLLPYHVVADYEAEEDD 180
              QQRAMRPGNQAELQMAYQDAWRVCHPDIKRPF SLEDACERLLPYHVVADYEAEEDD
Sbjct: 121 LQLQQRAMRPGNQAELQMAYQDAWRVCHPDIKRPFGSLEDACERLLPYHVVADYEAEEDD 180

Query: 181 RILDSDPTGQILSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSEERLMF 240
           RILDSDPTGQ+LSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSEERLMF
Sbjct: 181 RILDSDPTGQMLSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSEERLMF 240

Query: 241 EQALMQEEKRNLLELKAEIELR-KAGKETHDAKMRMAAMMQT-EPKAEPQANEMMVRGAM 300
           EQALMQEEKRNL ELKAEIELR KA KE HDAK RMAAMMQT + ++EPQANEMM+R +M
Sbjct: 241 EQALMQEEKRNLQELKAEIELRGKASKEAHDAKTRMAAMMQTDQTRSEPQANEMMIRASM 300

Query: 301 RAGAHVGSQTGDVPVGHGVAEQEQVHPNEMINGWGNNTQGDDKEASEDLLNDEEAENGDA 360
           R GAHVGSQ+ DVPVG    +QEQ HP+EMINGWGNNTQGD+KEASEDLLNDEEAENGD 
Sbjct: 301 RTGAHVGSQSNDVPVG----DQEQPHPSEMINGWGNNTQGDEKEASEDLLNDEEAENGDT 360

Query: 361 GMHDSWREAGEFDLNTR 371
           GMHDSWRE GEFDLN+R
Sbjct: 361 GMHDSWREVGEFDLNSR 373

[Close]

BLAST of Sed0013778.1 vs. ExPASy TrEMBL
Match: A0A6J1H2M5 (putative mediator of RNA polymerase II transcription subunit 26 OS=Cucurbita moschata OX=3662 GN=LOC111459804 PE=4 SV=1)

HSP 1 Score: 581.3 bits (1497), Expect = 3.0e-162
Identity = 333/384 (86.72%), Postives = 343/384 (89.32%), Query Frame = 0


Query: 1   MDEAK--AMAALHQQQMLIQQQKQQQQQQQQQT-QHQQFLLLQQLHKQQQAQQQAAAISR 60
           MDEAK  AMAA HQQQ+L+QQ KQQQQQQQQQT QHQQFLLLQQL KQQQAQQQAAAISR
Sbjct: 17  MDEAKATAMAAQHQQQLLLQQHKQQQQQQQQQTQQHQQFLLLQQLQKQQQAQQQAAAISR 76

Query: 61  FPSNIDAHLRPPGLLLRPGSINLQPNPNPNSTASVPNLQSNPSPSQPSPQQLMLQQQQQQ 120
           FPSNIDAHLRPPGL LRPGSINL  N NPN  ASVPNLQSNPSP+QP  QQL  Q+QQQQ
Sbjct: 77  FPSNIDAHLRPPGLHLRPGSINLHQNLNPNPAASVPNLQSNPSPTQPPSQQLQQQKQQQQ 136

Query: 121 Q-------QQRAMRPGNQAELQMAYQDAWRVCHPDIKRPFSSLEDACERLLPYHVVADYE 180
           Q       QQRAMR GNQAELQMAYQDAWRVCHPDIKRPF SLEDACERLLPYHVVADYE
Sbjct: 137 QQQQQHQLQQRAMRTGNQAELQMAYQDAWRVCHPDIKRPFGSLEDACERLLPYHVVADYE 196

Query: 181 AEEDDRILDSDPTGQILSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSE 240
           AEEDDRILDSDPTGQ+LSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKR LGEFRSE
Sbjct: 197 AEEDDRILDSDPTGQMLSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRTLGEFRSE 256

Query: 241 ERLMFEQALMQEEKRNLLELKAEIELR-KAGKETHDAKMRMAAMMQTE--PKAEPQANEM 300
           ERLMFEQALMQEEKRNLLELKAEIELR KAG+E HDAKMRMAAMMQT    +AEPQANEM
Sbjct: 257 ERLMFEQALMQEEKRNLLELKAEIELRGKAGREAHDAKMRMAAMMQTTDLTRAEPQANEM 316

Query: 301 MVRGAMRAGAHVGSQTGDVPVGHGVAEQEQVHPNEMINGWG-NNTQGDDKEASEDLLNDE 360
           MVRG +R GAHVGSQ+ DV VGH V EQEQVHPNEM+NGWG NNTQGDDKEASEDLLNDE
Sbjct: 317 MVRGPLRTGAHVGSQSSDVRVGHSVGEQEQVHPNEMVNGWGNNNTQGDDKEASEDLLNDE 376

Query: 361 EAENGDAGMHDSWREAGEFDLNTR 371
           EAENGD GMHDSWRE GEFDLNTR
Sbjct: 377 EAENGDTGMHDSWREVGEFDLNTR 400

[Close]

BLAST of Sed0013778.1 vs. ExPASy TrEMBL
Match: A0A1S3BL97 (bromodomain-containing protein DDB_G0280777 OS=Cucumis melo OX=3656 GN=LOC103491276 PE=4 SV=1)

HSP 1 Score: 579.3 bits (1492), Expect = 1.1e-161
Identity = 326/375 (86.93%), Postives = 338/375 (90.13%), Query Frame = 0


Query: 1   MDEAKAMAALHQQQMLIQQQKQQQQQQQQQTQHQQFLLLQQLHKQQQAQQQAAAISRFPS 60
           MDEAKAMAA HQQQ+L+QQ KQQQQQQQQ  QHQQFLLLQQL KQQQAQ QAAAISRFPS
Sbjct: 1   MDEAKAMAAQHQQQLLLQQHKQQQQQQQQTQQHQQFLLLQQLQKQQQAQHQAAAISRFPS 60

Query: 61  NIDAHLRPPGLLLRPGSINLQPNPNPNSTASVPNLQSNPSPSQPSPQQLMLQQQQQQQ-- 120
           NIDAHLRPPGL LRPGSINL  NPNPN TASV NLQSNPSPSQP  QQL  QQQQQ Q  
Sbjct: 61  NIDAHLRPPGLHLRPGSINLHQNPNPNPTASVSNLQSNPSPSQPPSQQLQQQQQQQHQLQ 120

Query: 121 -QQRAMRPGNQAELQMAYQDAWRVCHPDIKRPFSSLEDACERLLPYHVVADYEAEEDDRI 180
            QQRAMRPGNQAELQMAYQDAWRVCHPDIKRPF SLEDACERLLPYHVVADYEAEEDDRI
Sbjct: 121 LQQRAMRPGNQAELQMAYQDAWRVCHPDIKRPFGSLEDACERLLPYHVVADYEAEEDDRI 180

Query: 181 LDSDPTGQILSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSEERLMFEQ 240
           LDSDPTGQ+LSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSEERLMFEQ
Sbjct: 181 LDSDPTGQMLSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSEERLMFEQ 240

Query: 241 ALMQEEKRNLLELKAEIELR-KAGKETHDAKMRMAAMMQT-EPKAEPQANEMMVRGAMRA 300
           ALMQEEKRNL ELKAEIELR KA KE HDAK RMAAMMQT + ++EPQANEMM+R +MR 
Sbjct: 241 ALMQEEKRNLQELKAEIELRGKASKEAHDAKTRMAAMMQTDQTRSEPQANEMMIRASMRT 300

Query: 301 GAHVGSQTGDVPVGHGVAEQEQVHPNEMINGWGNNTQGDDKEASEDLLNDEEAENGDAGM 360
           GAHVGSQ+ DVPVG    +QEQ HP+EMINGWGNNTQGD+KEASEDLLNDEEAENGD GM
Sbjct: 301 GAHVGSQSSDVPVG----DQEQPHPSEMINGWGNNTQGDEKEASEDLLNDEEAENGDTGM 360

Query: 361 HDSWREAGEFDLNTR 371
           HDSWRE GEFDLNTR
Sbjct: 361 HDSWREVGEFDLNTR 371

[Close]

BLAST of Sed0013778.1 vs. ExPASy TrEMBL
Match: A0A6J1IDW9 (ras-interacting protein RIP3 OS=Cucurbita maxima OX=3661 GN=LOC111471787 PE=4 SV=1)

HSP 1 Score: 574.7 bits (1480), Expect = 2.8e-160
Identity = 327/376 (86.97%), Postives = 335/376 (89.10%), Query Frame = 0


Query: 1   MDEAKAMAALHQQQMLIQQQKQQQQQQQQQTQHQQFLLLQQLHKQQQAQQQAAAISRFPS 60
           MDEAKAMAA HQQQ+L+QQ KQQQQQQQQ  QHQQFLLLQQL KQQQAQQQAAAISRFPS
Sbjct: 1   MDEAKAMAAQHQQQLLLQQHKQQQQQQQQTQQHQQFLLLQQLQKQQQAQQQAAAISRFPS 60

Query: 61  NIDAHLRPPGLLLRPGSINL--QPNPNPNSTASVPNLQSNPSPSQPSPQQLMLQQQQQQQ 120
           NIDAHLRPPGL LRPGSINL   PNPNPN T SVPNLQSNPSPSQP  QQ   QQQ Q Q
Sbjct: 61  NIDAHLRPPGLHLRPGSINLHQNPNPNPNPTTSVPNLQSNPSPSQPPSQQSQQQQQHQHQ 120

Query: 121 -QQRAMRPGNQAELQMAYQDAWRVCHPDIKRPFSSLEDACERLLPYHVVADYEAEEDDRI 180
            QQRAMR GNQAELQMAYQDAWRVCHPDIKRPF SLEDACERLLPYHVVADYEAEEDDRI
Sbjct: 121 LQQRAMRSGNQAELQMAYQDAWRVCHPDIKRPFGSLEDACERLLPYHVVADYEAEEDDRI 180

Query: 181 LDSDPTGQILSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSEERLMFEQ 240
           LDSDPTGQ+LSRSQQWDHNISAKISEFI TFEKQVLAFNIITRKRALGEFRSEERLMFEQ
Sbjct: 181 LDSDPTGQMLSRSQQWDHNISAKISEFIGTFEKQVLAFNIITRKRALGEFRSEERLMFEQ 240

Query: 241 ALMQEEKRNLLELKAEIELR-KAGKETHDAKMRMAAMMQ-TEPKAEPQANEMMVRGAMRA 300
           ALMQEEKR LLELKAEIELR KA KE  DAK RMAAMMQ  + + E QANEMMVR  MR 
Sbjct: 241 ALMQEEKRKLLELKAEIELRGKASKEAQDAKTRMAAMMQPDQTRGETQANEMMVRAPMRT 300

Query: 301 GAHVGSQTGDVPVGHGVAEQEQVHPNEMINGWGNN-TQGDDKEASEDLLNDEEAENGDAG 360
           GAHVGSQ+ DVPVGHGV EQEQVHP+EMINGWGNN TQGD+KEASEDLLNDEEAENGD G
Sbjct: 301 GAHVGSQSSDVPVGHGVGEQEQVHPSEMINGWGNNTTQGDEKEASEDLLNDEEAENGDTG 360

Query: 361 MHDSWREAGEFDLNTR 371
           MHDSWRE GEFDLNTR
Sbjct: 361 MHDSWREVGEFDLNTR 376

[Close]

BLAST of Sed0013778.1 vs. ExPASy TrEMBL
Match: A0A6J1EXS9 (PH domain-containing protein DDB_G0275795-like OS=Cucurbita moschata OX=3662 GN=LOC111439565 PE=4 SV=1)

HSP 1 Score: 569.7 bits (1467), Expect = 8.9e-159
Identity = 328/382 (85.86%), Postives = 336/382 (87.96%), Query Frame = 0


Query: 1   MDEAKAMAALHQQQMLIQQQKQQQQQQQQQ----TQHQQFLLLQQLHKQQQAQQQAAAIS 60
           MDEAKAMAA HQQQ+L+QQ KQQQQQQQQQ     QHQQFLLLQQL KQQQAQQQAAAIS
Sbjct: 1   MDEAKAMAAQHQQQLLLQQHKQQQQQQQQQQQQTQQHQQFLLLQQLQKQQQAQQQAAAIS 60

Query: 61  RFPSNIDAHLRPPGLLLRPGSINL----QPNPNPNSTASVPNLQSNPSPSQPSPQQLMLQ 120
           RFPSNIDAHLRPPGL LRPGSINL     PNPNPN T SVPNLQSNPSPSQP  QQ   Q
Sbjct: 61  RFPSNIDAHLRPPGLHLRPGSINLHQNPNPNPNPNPTTSVPNLQSNPSPSQPPSQQSQQQ 120

Query: 121 QQQQQQ-QQRAMRPGNQAELQMAYQDAWRVCHPDIKRPFSSLEDACERLLPYHVVADYEA 180
           QQ Q Q QQRAMR GNQAELQMAYQDAWRVCHPDIKRPF SLEDACERLLPYHVVADYEA
Sbjct: 121 QQHQHQLQQRAMRSGNQAELQMAYQDAWRVCHPDIKRPFGSLEDACERLLPYHVVADYEA 180

Query: 181 EEDDRILDSDPTGQILSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSEE 240
           EEDDRILDSDPTGQ+LSRSQQWDHNISAKISEFI TFEKQVLAFNIITRKRALGEFRSEE
Sbjct: 181 EEDDRILDSDPTGQMLSRSQQWDHNISAKISEFIGTFEKQVLAFNIITRKRALGEFRSEE 240

Query: 241 RLMFEQALMQEEKRNLLELKAEIELR-KAGKETHDAKMRMAAMMQT-EPKAEPQANEMMV 300
           RLMFEQALMQEEKR LLELKAEIELR KA KE  DAK RMAAMMQT + + E QANEMMV
Sbjct: 241 RLMFEQALMQEEKRKLLELKAEIELRGKASKEAQDAKTRMAAMMQTDQTRGETQANEMMV 300

Query: 301 RGAMRAGAHVGSQTGDVPVGHGVAEQEQVHPNEMINGWGNN-TQGDDKEASEDLLNDEEA 360
           R  MR GAHVGSQ+ DVPVGHGV EQEQVHP+EMINGW NN TQGD+KEASEDLLNDEEA
Sbjct: 301 RAPMRTGAHVGSQSSDVPVGHGVGEQEQVHPSEMINGWRNNTTQGDEKEASEDLLNDEEA 360

Query: 361 ENGDAGMHDSWREAGEFDLNTR 371
           ENGD GMHDSWRE GEFDLNTR
Sbjct: 361 ENGDTGMHDSWREVGEFDLNTR 382

[Close]

BLAST of Sed0013778.1 vs. ExPASy TrEMBL
Match: A0A6J1E2K6 (bromodomain-containing protein DDB_G0280777 OS=Momordica charantia OX=3673 GN=LOC111025908 PE=4 SV=1)

HSP 1 Score: 565.1 bits (1455), Expect = 2.2e-157
Identity = 323/382 (84.55%), Postives = 338/382 (88.48%), Query Frame = 0


Query: 1   MDEAKAMAALHQQQMLIQQQKQQQQ------QQQQQTQHQQFLLLQQLHKQQQAQQQAAA 60
           M+EAKAMAA HQQQ+L+QQ KQQQQ      QQQQQ Q QQFLL QQL KQQQA  QAAA
Sbjct: 1   MEEAKAMAAQHQQQLLLQQHKQQQQQQHHQTQQQQQQQQQQFLLFQQLQKQQQA-AQAAA 60

Query: 61  ISRFPSNIDAHLRPPGLLLRPGSINL----QPNPNPNSTASVPNLQSNPSPSQPSPQQLM 120
           ISRFPSNIDAHLRPPGL LRPGSINL    +PNPNPN TAS+PNLQSNPSPSQPS QQL 
Sbjct: 61  ISRFPSNIDAHLRPPGLHLRPGSINLHQNPKPNPNPNPTASLPNLQSNPSPSQPSSQQL- 120

Query: 121 LQQQQQQQQQRAMRPGNQAELQMAYQDAWRVCHPDIKRPFSSLEDACERLLPYHVVADYE 180
                  QQQRAMRPGNQAELQMAYQDAWRVCHPDIKRPF+SLEDACERLLPYHVVADYE
Sbjct: 121 -------QQQRAMRPGNQAELQMAYQDAWRVCHPDIKRPFASLEDACERLLPYHVVADYE 180

Query: 181 AEEDDRILDSDPTGQILSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSE 240
           AEEDDRILDSDPTGQ+LSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSE
Sbjct: 181 AEEDDRILDSDPTGQMLSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSE 240

Query: 241 ERLMFEQALMQEEKRNLLELKAEIELR-KAGKETHDAKMRMAAMMQT-EPKAEPQANEMM 300
           ERLMFEQALMQEEKRNLLELKAEIELR KAGKE H+AK RMA+MMQT + +AEPQANEMM
Sbjct: 241 ERLMFEQALMQEEKRNLLELKAEIELRGKAGKEAHEAKTRMASMMQTDQTRAEPQANEMM 300

Query: 301 VRGAMRAGAHVGSQTGDVPVGHGVAEQEQVHPNEMINGWGNNTQGDDKEASEDLLNDEEA 360
            R  MR GA V SQ+GDV VGHGV EQEQVHP+EM+NGWGNNTQGD+KEASEDLLNDEEA
Sbjct: 301 ARVPMRTGALVRSQSGDVQVGHGVGEQEQVHPSEMMNGWGNNTQGDEKEASEDLLNDEEA 360

Query: 361 ENGDAGMHDSWREAGEFDLNTR 371
           ENGD GMHDSWRE GEFDLNTR
Sbjct: 361 ENGDTGMHDSWREVGEFDLNTR 373

[Close]

BLAST of Sed0013778.1 vs. TAIR 10
Match: AT5G17510.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 384.0 bits (985), Expect = 1.3e-106
Identity = 233/363 (64.19%), Postives = 277/363 (76.31%), Query Frame = 0


Query: 13  QQMLIQQQKQQQQQQQQQTQHQQFLLLQQLHKQQQAQQQAAAISRFPSNIDAHLRPPGLL 72
           QQ   QQQ   Q Q QQQ + QQ LLLQQL KQ   QQQ AA+SRFPSNID HLRPPGL+
Sbjct: 15  QQQQQQQQLLYQHQLQQQQRQQQMLLLQQLQKQ---QQQQAAMSRFPSNIDVHLRPPGLI 74

Query: 73  L-RPGSINLQ--PNPNPNSTASVPNLQSNPSPSQPSPQQLMLQQQQQQQQQRAMRPGNQA 132
             RP +   Q  P PNPN     PN Q        S QQ+M QQQQQQQQQ+ MRP N  
Sbjct: 75  QNRPINPPPQQNPTPNPNLGQQTPNFQQQ-QQQNVSSQQMMQQQQQQQQQQKLMRPLNHI 134

Query: 133 ELQMAYQDAWRVCHPDIKRPFSSLEDACERLLPYHVVADYEAEEDDRILDSDPTGQILSR 192
           ELQ AYQDAWRVCHP+ K+PFSSLEDACERLLPYHVVADYEAEEDDRILDSDPTGQ LSR
Sbjct: 135 ELQCAYQDAWRVCHPNFKQPFSSLEDACERLLPYHVVADYEAEEDDRILDSDPTGQALSR 194

Query: 193 SQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSEERLMFEQALMQEEKRNLLE 252
           SQQWD+NI+AK++EF ATFEKQ LAFNIITRKRA+GEFRSEERLM EQAL+Q+E++ L+E
Sbjct: 195 SQQWDNNIAAKVAEFTATFEKQALAFNIITRKRAMGEFRSEERLMVEQALLQDERKALIE 254

Query: 253 LKAEIELRKAGKETHDAKMRMAAMMQTEPKAEPQAN-EMMVRGAMRAGAHVGSQTGDVPV 312
           LKAE++  KAG+E  +AK+RMAA+ Q     + Q++ E+M R  +RA A VG+Q  ++ +
Sbjct: 255 LKAEMDREKAGREAQEAKLRMAALAQA---GQSQSHAEIMARNPLRANA-VGNQGSNIQL 314

Query: 313 GHGVAEQ-EQVHPNEMINGWGNNTQGDDKEASEDLLNDEEAENGDAGMHDSWREAGEFDL 371
            H + EQ   ++P+EM+NGWGNN+Q +DKE SED LNDEE ENG+ G  ++WREAGEFDL
Sbjct: 315 SHEMGEQGRNMNPDEMMNGWGNNSQREDKEPSEDFLNDEENENGETGEQENWREAGEFDL 369

[Close]

BLAST of Sed0013778.1 vs. TAIR 10
Match: AT3G03460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17510.1); Has 19732 Blast hits to 8747 proteins in 456 species: Archae - 0; Bacteria - 449; Metazoa - 7438; Fungi - 2099; Plants - 1550; Viruses - 53; Other Eukaryotes - 8143 (source: NCBI BLink). )

HSP 1 Score: 283.1 bits (723), Expect = 3.2e-76
Identity = 201/389 (51.67%), Postives = 253/389 (65.04%), Query Frame = 0


Query: 1   MDEAKAMAALHQQQMLIQQQKQQQQQQQQQTQHQQFLLLQQLHKQQQAQQQAAAISRFPS 60
           M+E+K    L QQQ+L+Q Q+QQQ QQ+Q    QQ  L+Q L KQ   QQQ AA+S FP 
Sbjct: 1   MEESK-QQQLQQQQLLLQMQQQQQMQQRQ----QQLFLMQHLQKQ---QQQQAAMSMFPP 60

Query: 61  NIDAHLRPPGLL-LRPGSINLQPNPNPNSTASVPNL--QSNPSPSQPSPQQLMLQQQ--- 120
           N DAHLRPPGL+  RP +  LQ N NPN     PNL  Q+N    Q   Q +M+ QQ   
Sbjct: 61  NADAHLRPPGLIPNRPVNPFLQ-NVNPN-----PNLIQQANKFQQQQQQQMMMMMQQQQL 120

Query: 121 QQQQQQRAMRPGNQAELQMAYQDAWRVCHPDIKRPFSSLEDACERLLPYHVVADYEAEED 180
           QQQQQQ+ MRP NQ E+Q AYQDAWRVCHPD KRPF+SLEDACERLLPYHVVADYEAEED
Sbjct: 121 QQQQQQKLMRPSNQLEIQFAYQDAWRVCHPDFKRPFASLEDACERLLPYHVVADYEAEED 180

Query: 181 DRILDSDPTGQILSRSQQWDHNISAKISEFIATFEKQVLAFNIITRKRALGEFRSEERLM 240
           D I DS+ T Q L R QQWD+NI+AK++EF ATFE QV AF+ I +KR+ G+ R EERLM
Sbjct: 181 DSIFDSNTTSQTLPRCQQWDNNIAAKVAEFTATFEGQVQAFDRIIQKRSDGD-RVEERLM 240

Query: 241 FEQALMQEEKRNLLELKAEIELRKAGKETHDAKMRMAAMMQTEPKAEPQAN-----EMMV 300
            EQ L+ +E+   ++L  E+       +  DA++RMAA+ Q   +A  + +     EMM 
Sbjct: 241 MEQVLLNDERNACIQLDREM-------KAQDARLRMAALAQAAGQARAEESQQSHAEMMA 300

Query: 301 RGAMRAGAHVGSQTGDVPVGHGVAEQEQVHPNEM---INGWG-----NNTQGDDKEASED 360
           R  +RA A          +G+   +   ++PNEM   +NGWG     NN+Q ++KE  ED
Sbjct: 301 RNPLRANA----------IGNHGEQGRNMNPNEMMLLMNGWGNNNNNNNSQKEEKEPLED 354

Query: 361 LLNDEEAENGDAGMHDSWREAGEFDLNTR 371
            LNDEE ENG+   H+ WR +G+FDLN R
Sbjct: 361 FLNDEENENGE---HEKWRRSGDFDLNIR 354

The following BLAST results are available for this feature:

BLAST of Sed0013778.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887907.1	4.5e-165	88.20	involucrin [Benincasa hispida]	[more]
XP_023533474.1	3.6e-162	86.98	SWI/SNF chromatin-remodeling complex subunit SNF5-like [Cucurbita pepo subsp. pe...	[more]
XP_022958641.1	6.1e-162	86.72	putative mediator of RNA polymerase II transcription subunit 26 [Cucurbita mosch...	[more]
XP_008449378.1	2.3e-161	86.93	PREDICTED: bromodomain-containing protein DDB_G0280777 [Cucumis melo]	[more]
XP_004140082.2	6.7e-161	86.21	putative uncharacterized protein DDB_G0271606 [Cucumis sativus]	[more]

BLAST of Sed0013778.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0013778.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H2M5	3.0e-162	86.72	putative mediator of RNA polymerase II transcription subunit 26 OS=Cucurbita mos...	[more]
A0A1S3BL97	1.1e-161	86.93	bromodomain-containing protein DDB_G0280777 OS=Cucumis melo OX=3656 GN=LOC103491...	[more]
A0A6J1IDW9	2.8e-160	86.97	ras-interacting protein RIP3 OS=Cucurbita maxima OX=3661 GN=LOC111471787 PE=4 SV...	[more]
A0A6J1EXS9	8.9e-159	85.86	PH domain-containing protein DDB_G0275795-like OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1E2K6	2.2e-157	84.55	bromodomain-containing protein DDB_G0280777 OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of Sed0013778.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17510.1	1.3e-106	64.19	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G03460.1	3.2e-76	51.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 233..253
None	No IPR available	COILS	Coil	Coil	coord: 10..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 322..370
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 349..364
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..109
None	No IPR available	PANTHER	PTHR15572	GLIOMA TUMOR SUPPRESSOR CANDIDATE REGION GENE 1	coord: 11..370
None	No IPR available	PANTHER	PTHR15572:SF6	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT-LIKE PROTEIN	coord: 11..370
IPR015671	GLTSCR protein, conserved region	PFAM	PF15249	GLTSCR1	coord: 137..251 e-value: 5.4E-28 score: 97.5

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0013778	Sed0013778	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013778.1-three_prime_utr	Sed0013778.1-three_prime_utr-LG05:3561857..3562135	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013778.1-exon	Sed0013778.1-exon-LG05:3561857..3562772	exon
Sed0013778.1-exon	Sed0013778.1-exon-LG05:3567723..3568293	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013778.1-cds	Sed0013778.1-cds-LG05:3562136..3562772	CDS
Sed0013778.1-cds	Sed0013778.1-cds-LG05:3567723..3568198	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013778.1-five_prime_utr	Sed0013778.1-five_prime_utr-LG05:3568199..3568293	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0013778.1	Sed0013778.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0016514	SWI/SNF complex