Sed0013693.1 (mRNA) Chayote v1

Overview


Name	Sed0013693.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	protein RADIALIS-like 1
Location	LG04: 47371008 .. 47371318 (-)
Sequence length	311
RNA-Seq Expression	Sed0013693.1
Synteny	Sed0013693.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTGCAAGCTTTTGAGCTCCTCTTCACTTCAAACTCATTTAAAGCTTTTCCTTTTGTTATAGAAATAACAATGGCTTCAATGTCAGCTCATGGTTCAAGTTCATGGAGTCCAATGGAAAACAAAGCATTTGAGGAAGCTTTGGCAGTGTTTGACCAAAACACACCTGAAAGATGGCACAATGTTGCAAAGGCCATTGGTGGAAGAACTGCTGAAGAAGTAAAAAAACATTATGAGCTTCTTGTGGAGGATGTTAACTATATTATTCAGTCTGCTGAAATTTCGTACCCTTATCGAAGCTCGAAGAGATGA

mRNA sequence

CCTTGCAAGCTTTTGAGCTCCTCTTCACTTCAAACTCATTTAAAGCTTTTCCTTTTGTTATAGAAATAACAATGGCTTCAATGTCAGCTCATGGTTCAAGTTCATGGAGTCCAATGGAAAACAAAGCATTTGAGGAAGCTTTGGCAGTGTTTGACCAAAACACACCTGAAAGATGGCACAATGTTGCAAAGGCCATTGGTGGAAGAACTGCTGAAGAAGTAAAAAAACATTATGAGCTTCTTGTGGAGGATGTTAACTATATTATTCAGTCTGCTGAAATTTCGTACCCTTATCGAAGCTCGAAGAGATGA

Coding sequence (CDS)

ATGGCTTCAATGTCAGCTCATGGTTCAAGTTCATGGAGTCCAATGGAAAACAAAGCATTTGAGGAAGCTTTGGCAGTGTTTGACCAAAACACACCTGAAAGATGGCACAATGTTGCAAAGGCCATTGGTGGAAGAACTGCTGAAGAAGTAAAAAAACATTATGAGCTTCTTGTGGAGGATGTTAACTATATTATTCAGTCTGCTGAAATTTCGTACCCTTATCGAAGCTCGAAGAGATGA

Protein sequence

MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVNYIIQSAEISYPYRSSKR

Homology

[Close]

BLAST of Sed0013693.1 vs. NCBI nr
Match: XP_022952660.1 (protein RADIALIS-like 1 [Cucurbita moschata] >XP_022952661.1 protein RADIALIS-like 1 [Cucurbita moschata] >XP_023554744.1 protein RADIALIS-like 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.6 bits (296), Expect = 2.4e-23
Identity = 58/79 (73.42%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVED 60
          MASMSAHGSS+W+  ENKAFE+ALAVFDQ+TPERW NVAKAIGG+T +EVK+HY+LLV+D
Sbjct: 1  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKD 60

Query: 61 VNYIIQSAEISYPYRSSKR 80
          V + I+S EI++PYRSS R
Sbjct: 61 VKH-IESGEINFPYRSSTR 78

[Close]

BLAST of Sed0013693.1 vs. NCBI nr
Match: XP_022136064.1 (protein RADIALIS-like 1 [Momordica charantia])

HSP 1 Score: 117.9 bits (294), Expect = 4.1e-23
Identity = 55/77 (71.43%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVED 60
          MASMS+HGSS+W+  +NKAFE+ALAV+DQ+TPERW NVAKA+GG+TAEEVK+HYELLVED
Sbjct: 1  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVED 60

Query: 61 VNYIIQSAEISYPYRSS 78
          V + I+S ++S+PYR+S
Sbjct: 61 VKF-IESGQVSFPYRTS 76

[Close]

BLAST of Sed0013693.1 vs. NCBI nr
Match: XP_022972544.1 (protein RADIALIS-like 1 [Cucurbita maxima] >XP_022972545.1 protein RADIALIS-like 1 [Cucurbita maxima])

HSP 1 Score: 117.1 bits (292), Expect = 7.0e-23
Identity = 57/79 (72.15%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVED 60
          MASMSAHGSS+W+  ENKAFE+ALAVFDQ+TP+RW NVAKAIGG+T +EVK+HY+LLV D
Sbjct: 1  MASMSAHGSSAWTARENKAFEKALAVFDQDTPDRWVNVAKAIGGKTEDEVKRHYQLLVND 60

Query: 61 VNYIIQSAEISYPYRSSKR 80
          V + I+S EI++PYRSS R
Sbjct: 61 VKH-IESGEINFPYRSSTR 78

[Close]

BLAST of Sed0013693.1 vs. NCBI nr
Match: XP_008447026.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 1.0e-21
Identity = 52/79 (65.82%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVED 60
          MASMSAHGS+ W+ +ENKAFE+ALA++D++TPERW NVAKAIGG+T E+VK+HY+LL+ED
Sbjct: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60

Query: 61 VNYIIQSAEISYPYRSSKR 80
          VN+ I++ +I +PYR+S R
Sbjct: 61 VNH-IENGQIPFPYRNSTR 78

[Close]

BLAST of Sed0013693.1 vs. NCBI nr
Match: XP_038888369.1 (protein RADIALIS-like 1 [Benincasa hispida])

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-21
Identity = 53/78 (67.95%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 1  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVED 60
          MASMS+HGS SW+  +NKAFE+ALAV+DQ+TP+RW NVAKA+GG+TAEEVK HY LLVED
Sbjct: 1  MASMSSHGSGSWTAKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKMHYALLVED 60

Query: 61 VNYIIQSAEISYPYRSSK 79
          V + I+S ++ +PYRSS+
Sbjct: 61 VKF-IESGQVPFPYRSSR 77

[Close]

BLAST of Sed0013693.1 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 6.3e-19
Identity = 44/77 (57.14%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 2  ASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDV 61
          +SMS+  S SW+  +NKAFE+ALA +DQ+TP RW NVAK +GG+T EEVK+HYELLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 NYIIQSAEISYP-YRSS 78
          N  I++  + +P YR+S
Sbjct: 64 N-SIENGHVPFPNYRTS 79

[Close]

BLAST of Sed0013693.1 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-18
Identity = 46/78 (58.97%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 1  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVED 60
          MAS S   S+SW+  ENK FE ALA +DQ+TP+RWHNVA+A+GG++AEEV++HYELL+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VNYIIQSAEISYP-YRSS 78
          VN  I+S    +P YRS+
Sbjct: 61 VN-DIESGRYPHPNYRSN 77

[Close]

BLAST of Sed0013693.1 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.0e-18
Identity = 40/71 (56.34%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 3  SMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVN 62
          SMS++GS SW+  +NKAFE ALAV+DQ+TP+RWHNVA+A+GG+T EE K+ Y+LLV D+ 
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 YIIQSAEISYP 74
            I++  + +P
Sbjct: 65 -SIENGHVPFP 74

[Close]

BLAST of Sed0013693.1 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-17
Identity = 46/78 (58.97%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 1  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVED 60
          MAS    G   WS  ENKAFE ALAV+D++TP+RW NVA+A+ GRT EEVKKHYE+LVED
Sbjct: 1  MASTRGSG-RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 60

Query: 61 VNYIIQSAEISYP-YRSS 78
          + Y I+S ++ +P YR++
Sbjct: 61 IKY-IESGKVPFPNYRTT 76

[Close]

BLAST of Sed0013693.1 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-16
Identity = 40/66 (60.61%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVED 60
          MAS S   SSSW+  +NK FE ALAV+D++TP+RW NVAKA+G ++AEEVK+HY++LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VNYIIQ 67
          +  I Q
Sbjct: 61 LMNIEQ 66

[Close]

BLAST of Sed0013693.1 vs. ExPASy TrEMBL
Match: A0A6J1GKV1 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111455288 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.2e-23
Identity = 58/79 (73.42%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVED 60
          MASMSAHGSS+W+  ENKAFE+ALAVFDQ+TPERW NVAKAIGG+T +EVK+HY+LLV+D
Sbjct: 1  MASMSAHGSSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVKD 60

Query: 61 VNYIIQSAEISYPYRSSKR 80
          V + I+S EI++PYRSS R
Sbjct: 61 VKH-IESGEINFPYRSSTR 78

[Close]

BLAST of Sed0013693.1 vs. ExPASy TrEMBL
Match: A0A6J1C385 (protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-23
Identity = 55/77 (71.43%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVED 60
          MASMS+HGSS+W+  +NKAFE+ALAV+DQ+TPERW NVAKA+GG+TAEEVK+HYELLVED
Sbjct: 1  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVED 60

Query: 61 VNYIIQSAEISYPYRSS 78
          V + I+S ++S+PYR+S
Sbjct: 61 VKF-IESGQVSFPYRTS 76

[Close]

BLAST of Sed0013693.1 vs. ExPASy TrEMBL
Match: A0A6J1I8Y0 (protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471083 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.4e-23
Identity = 57/79 (72.15%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVED 60
          MASMSAHGSS+W+  ENKAFE+ALAVFDQ+TP+RW NVAKAIGG+T +EVK+HY+LLV D
Sbjct: 1  MASMSAHGSSAWTARENKAFEKALAVFDQDTPDRWVNVAKAIGGKTEDEVKRHYQLLVND 60

Query: 61 VNYIIQSAEISYPYRSSKR 80
          V + I+S EI++PYRSS R
Sbjct: 61 VKH-IESGEINFPYRSSTR 78

[Close]

BLAST of Sed0013693.1 vs. ExPASy TrEMBL
Match: A0A0A0K3K0 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G168060 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.4e-23
Identity = 55/79 (69.62%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVED 60
          MASMSAHGSS+W+ +ENKAFE+ALA++D++TPERW NVAKAIGG+T EEVK+HY+LL+ED
Sbjct: 1  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLED 60

Query: 61 VNYIIQSAEISYPYRSSKR 80
          VN+ I+S +I +PYR S R
Sbjct: 61 VNH-IESGQIPFPYRKSTR 78

[Close]

BLAST of Sed0013693.1 vs. ExPASy TrEMBL
Match: A0A1S3BGF0 (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489577 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.9e-22
Identity = 52/79 (65.82%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVED 60
          MASMSAHGS+ W+ +ENKAFE+ALA++D++TPERW NVAKAIGG+T E+VK+HY+LL+ED
Sbjct: 1  MASMSAHGSTQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLED 60

Query: 61 VNYIIQSAEISYPYRSSKR 80
          VN+ I++ +I +PYR+S R
Sbjct: 61 VNH-IENGQIPFPYRNSTR 78

[Close]

BLAST of Sed0013693.1 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 94.4 bits (233), Expect = 4.5e-20
Identity = 44/77 (57.14%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 2  ASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDV 61
          +SMS+  S SW+  +NKAFE+ALA +DQ+TP RW NVAK +GG+T EEVK+HYELLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 NYIIQSAEISYP-YRSS 78
          N  I++  + +P YR+S
Sbjct: 64 N-SIENGHVPFPNYRTS 79

[Close]

BLAST of Sed0013693.1 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 90.9 bits (224), Expect = 5.0e-19
Identity = 40/71 (56.34%), Postives = 57/71 (80.28%), Query Frame = 0


Query: 3  SMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVEDVN 62
          SMS++GS SW+  +NKAFE ALAV+DQ+TP+RWHNVA+A+GG+T EE K+ Y+LLV D+ 
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 YIIQSAEISYP 74
            I++  + +P
Sbjct: 65 -SIENGHVPFP 74

[Close]

BLAST of Sed0013693.1 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 85.9 bits (211), Expect = 1.6e-17
Identity = 40/66 (60.61%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVED 60
          MAS S   SSSW+  +NK FE ALAV+D++TP+RW NVAKA+G ++AEEVK+HY++LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VNYIIQ 67
          +  I Q
Sbjct: 61 LMNIEQ 66

[Close]

BLAST of Sed0013693.1 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-17
Identity = 38/61 (62.30%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVED 60
          MAS S    S W+  +NK FE ALAV+D++TP+RWHNVAKA+GG+T EEVK+HY++LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 V 62
          +
Sbjct: 61 L 61

[Close]

BLAST of Sed0013693.1 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-17
Identity = 38/61 (62.30%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1  MASMSAHGSSSWSPMENKAFEEALAVFDQNTPERWHNVAKAIGGRTAEEVKKHYELLVED 60
          MAS S    S W+  +NK FE ALAV+D++TP+RWHNVAKA+GG+T EEVK+HY++LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 V 62
          +
Sbjct: 61 L 61

The following BLAST results are available for this feature:

BLAST of Sed0013693.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952660.1	2.4e-23	73.42	protein RADIALIS-like 1 [Cucurbita moschata] >XP_022952661.1 protein RADIALIS-li...	[more]
XP_022136064.1	4.1e-23	71.43	protein RADIALIS-like 1 [Momordica charantia]	[more]
XP_022972544.1	7.0e-23	72.15	protein RADIALIS-like 1 [Cucurbita maxima] >XP_022972545.1 protein RADIALIS-like...	[more]
XP_008447026.1	1.0e-21	65.82	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
XP_038888369.1	1.3e-21	67.95	protein RADIALIS-like 1 [Benincasa hispida]	[more]

BLAST of Sed0013693.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	6.3e-19	57.14	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q6NNN0	1.4e-18	58.97	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q9SIJ5	7.0e-18	56.34	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q58FS3	2.0e-17	58.97	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q8GW75	2.3e-16	60.61	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]

BLAST of Sed0013693.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GKV1	1.2e-23	73.42	protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111455288 PE=4 SV=1	[more]
A0A6J1C385	2.0e-23	71.43	protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1	[more]
A0A6J1I8Y0	3.4e-23	72.15	protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471083 PE=4 SV=1	[more]
A0A0A0K3K0	4.4e-23	69.62	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G168060 PE=4 S...	[more]
A0A1S3BGF0	4.9e-22	65.82	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489577 PE=4 SV=1	[more]

BLAST of Sed0013693.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	4.5e-20	57.14	RAD-like 1	[more]
AT2G21650.1	5.0e-19	56.34	Homeodomain-like superfamily protein	[more]
AT1G19510.1	1.6e-17	60.61	RAD-like 5	[more]
AT1G75250.1	2.7e-17	62.30	RAD-like 6	[more]
AT1G75250.2	2.7e-17	62.30	RAD-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 1.9E-9 score: 47.4
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 10..58 score: 6.515964
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 11..58 e-value: 5.71965E-9 score: 45.259
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 10..54 e-value: 3.4E-7 score: 30.3
None	No IPR available	GENE3D	1.10.10.60		coord: 3..70 e-value: 1.8E-21 score: 77.7
None	No IPR available	PANTHER	PTHR43952:SF68	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 2..77
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 2..77
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 7..62 score: 9.892152
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 7..61

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0013693	Sed0013693	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013693.1-cds	Sed0013693.1-cds-LG04:47371008..47371247	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013693.1-exon	Sed0013693.1-exon-LG04:47371008..47371318	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013693.1-five_prime_utr	Sed0013693.1-five_prime_utr-LG04:47371248..47371318	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0013693.1	Sed0013693.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity