Sed0013575.1 (mRNA) Chayote v1

Overview
NameSed0013575.1
TypemRNA
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG06: 32328624 .. 32328902 (-)
Sequence length243
RNA-Seq ExpressionSed0013575.1
SyntenySed0013575.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGGATGAGTTTGACGTTCAAAAGCTTGGCTTTAATGGTGGTACACAGACACACAGCAGCATCCAAATCCACAAGCCCTTCAAGCACCGGGCAGCATGTTTCTTTCCTATGGTCGCCAACTCCCACATGAACCAGCCCCCCCAACAGGTCCACACACGCCCCCAGCTTCAGCGTGTCGATCGGGCAAGTCGCTGCTTGCTTCGGCGGGCACGGCGTCCCCGGTGACGGCACTGCTGGAGCTGGCTTTATTGGTGGAGGCGGACTAGGCACGTAG

mRNA sequence

ATGGGGAGGATGAGTTTGACGTTCAAAAGCTTGGCTTTAATGGTGGTACACAGACACACAGCAGCATCCAAATCCACAAGCCCTTCAAGCACCGGGCAGCATGTTTCTTTCCTATGGTCCACACACGCCCCCAGCTTCAGCGTGTCGATCGGGCAAGTCGCTGCTTGCTTCGGCGGGCACGGCGTCCCCGGTGACGGCACTGCTGGAGCTGGCTTTATTGGTGGAGGCGGACTAGGCACGTAG

Coding sequence (CDS)

ATGGGGAGGATGAGTTTGACGTTCAAAAGCTTGGCTTTAATGGTGGTACACAGACACACAGCAGCATCCAAATCCACAAGCCCTTCAAGCACCGGGCAGCATGTTTCTTTCCTATGGTCCACACACGCCCCCAGCTTCAGCGTGTCGATCGGGCAAGTCGCTGCTTGCTTCGGCGGGCACGGCGTCCCCGGTGACGGCACTGCTGGAGCTGGCTTTATTGGTGGAGGCGGACTAGGCACGTAG

Protein sequence

MGRMSLTFKSLALMVVHRHTAASKSTSPSSTGQHVSFLWSTHAPSFSVSIGQVAACFGGHGVPGDGTAGAGFIGGGGLGT
Homology
BLAST of Sed0013575.1 vs. NCBI nr
Match: KAB1205160.1 (hypothetical protein CJ030_MR7G022012 [Morella rubra])

HSP 1 Score: 73.6 bits (179), Expect = 8.9e-10
Identity = 55/93 (59.14%), Postives = 59/93 (63.44%), Query Frame = 0

Query: 1   MGRMSLTFKSLALMVVHRHTAASKSTSPSSTGQHVSFLW------------STHAPSFSV 60
           MG M L F+SLAL+VV RHTAASKS SP STGQHVS               STHAP+F V
Sbjct: 38  MGIMILIFRSLALIVVQRHTAASKSASPCSTGQHVSLALLPIPTCTRPLSKSTHAPNFRV 97

Query: 61  SIGQVAACFGGHGVPGDGTAGAGFIG-GGGLGT 81
           S+G V  C GG    GDGT G G IG GGGLGT
Sbjct: 98  SMGHV-PCVGG---VGDGTGGCGTIGVGGGLGT 126

BLAST of Sed0013575.1 vs. NCBI nr
Match: AFK41124.1 (unknown [Lotus japonicus])

HSP 1 Score: 68.2 bits (165), Expect = 3.8e-08
Identity = 53/91 (58.24%), Postives = 55/91 (60.44%), Query Frame = 0

Query: 1  MGRMSLTFKSLALMVVHRHTAASKSTSPSSTGQHVSFLW------------STHAPSFSV 60
          MG M L  +SLALMVV RHTAASKSTSP+STGQ V                STHAPSF V
Sbjct: 1  MGMMILMLRSLALMVVQRHTAASKSTSPASTGQQVCLALPPIPMCIRPPKRSTHAPSFKV 60

Query: 61 SIGQVAACFGGHGVPGDGTAGAGFIGGGGLG 80
          SIG V  C GG    GDGT G    GGGGLG
Sbjct: 61 SIGHV-GCAGG----GDGTTG----GGGGLG 82

BLAST of Sed0013575.1 vs. NCBI nr
Match: KAG6419595.1 (hypothetical protein SASPL_121817 [Salvia splendens])

HSP 1 Score: 67.0 bits (162), Expect = 8.4e-08
Identity = 47/89 (52.81%), Postives = 51/89 (57.30%), Query Frame = 0

Query: 1  MGRMSLTFKSLALMVVHRHTAASKSTSPSSTGQHVSFLW------------STHAPSFSV 60
          MGR+ L  +SLALMVVHR  AAS  TSPSSTGQH S               STHAPSF V
Sbjct: 1  MGRIMLILRSLALMVVHRQRAASNPTSPSSTGQHFSLALGPTPMCTRPPNRSTHAPSFKV 60

Query: 61 SIGQVAACFGGHGVPGDGTAGAGFIGGGG 78
          SIG V+  FGG         G G +GGGG
Sbjct: 61 SIGHVSDAFGG---------GRGIVGGGG 80

BLAST of Sed0013575.1 vs. NCBI nr
Match: PNT29076.1 (hypothetical protein POPTR_006G008400 [Populus trichocarpa])

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-06
Identity = 48/91 (52.75%), Postives = 56/91 (61.54%), Query Frame = 0

Query: 1  MGRMSLTFKSLALMVVHRHTAASKSTSPSSTGQHVSF------LW------STHAPSFSV 60
          MGR+ L  +SLAL+ V RHTAASKST PSS+GQH S       +W      STHAP+  V
Sbjct: 1  MGRIRLMLRSLALITVQRHTAASKSTRPSSSGQHSSLALLPIPMWTSPPRTSTHAPNLRV 60

Query: 61 SIGQVAACFGGHGVPGDGTAGAGFIGGGGLG 80
          S+GQV +CFGG G  G    G G  GG G G
Sbjct: 61 SMGQV-SCFGGVG-GGFTIGGVGITGGSGGG 89

BLAST of Sed0013575.1 vs. NCBI nr
Match: KAF4399859.1 (hypothetical protein G4B88_021073 [Cannabis sativa])

HSP 1 Score: 60.5 bits (145), Expect = 7.8e-06
Identity = 48/92 (52.17%), Postives = 57/92 (61.96%), Query Frame = 0

Query: 4  MSLTFKSLALMVVHRHTAASKSTSPSSTGQHVSFL------------WSTHAPSFSVSIG 63
          ++LT +SLAL+ VHR TAASKST P STGQH+SF              STHAPSF VS+G
Sbjct: 2  ITLTLRSLALIEVHRQTAASKSTKPLSTGQHLSFALPPIPILTKPPKTSTHAPSFRVSMG 61

Query: 64 QVAAC--FGGHGVPGD-GTAGAGFIGGGGLGT 81
           V+     GGH   G  G  G+G + GGGLGT
Sbjct: 62 HVSCVGDGGGHTEGGGLGVTGSG-VEGGGLGT 92

BLAST of Sed0013575.1 vs. ExPASy TrEMBL
Match: A0A0A0L1W8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G620620 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.1e-12
Identity = 56/94 (59.57%), Postives = 63/94 (67.02%), Query Frame = 0

Query: 1  MGRMSLTFKSLALMVVHRHTAASKSTSPSSTGQHVSF------LW------STHAPSFSV 60
          MG + L F+SLALMVVH+ TAASKSTSPS TGQ V F      +W      STHAP+FSV
Sbjct: 1  MGMIRLIFRSLALMVVHKQTAASKSTSPSRTGQQVCFVRSPIPIWINPPNKSTHAPNFSV 60

Query: 61 SIGQVA--ACFGGHGVPGDGTAGAGFIGGGGLGT 81
          S+G V+     GG GV GDGT GAGF GG G GT
Sbjct: 61 SMGHVSRFGGGGGQGVDGDGTTGAGFNGGLGTGT 94

BLAST of Sed0013575.1 vs. ExPASy TrEMBL
Match: A0A6A1V1H8 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR7G022012 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.3e-10
Identity = 55/93 (59.14%), Postives = 59/93 (63.44%), Query Frame = 0

Query: 1   MGRMSLTFKSLALMVVHRHTAASKSTSPSSTGQHVSFLW------------STHAPSFSV 60
           MG M L F+SLAL+VV RHTAASKS SP STGQHVS               STHAP+F V
Sbjct: 38  MGIMILIFRSLALIVVQRHTAASKSASPCSTGQHVSLALLPIPTCTRPLSKSTHAPNFRV 97

Query: 61  SIGQVAACFGGHGVPGDGTAGAGFIG-GGGLGT 81
           S+G V  C GG    GDGT G G IG GGGLGT
Sbjct: 98  SMGHV-PCVGG---VGDGTGGCGTIGVGGGLGT 126

BLAST of Sed0013575.1 vs. ExPASy TrEMBL
Match: I3SLI2 (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.8e-08
Identity = 53/91 (58.24%), Postives = 55/91 (60.44%), Query Frame = 0

Query: 1  MGRMSLTFKSLALMVVHRHTAASKSTSPSSTGQHVSFLW------------STHAPSFSV 60
          MG M L  +SLALMVV RHTAASKSTSP+STGQ V                STHAPSF V
Sbjct: 1  MGMMILMLRSLALMVVQRHTAASKSTSPASTGQQVCLALPPIPMCIRPPKRSTHAPSFKV 60

Query: 61 SIGQVAACFGGHGVPGDGTAGAGFIGGGGLG 80
          SIG V  C GG    GDGT G    GGGGLG
Sbjct: 61 SIGHV-GCAGG----GDGTTG----GGGGLG 82

BLAST of Sed0013575.1 vs. ExPASy TrEMBL
Match: A0A6N2KCG4 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS10116 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-07
Identity = 49/93 (52.69%), Postives = 57/93 (61.29%), Query Frame = 0

Query: 1  MGRMSLTFKSLALMVVHRHTAASKSTSPSSTGQHVSF------LW------STHAPSFSV 60
          MG + L  +SLALMVV RH AASKST PSSTGQH S       +W      STHAP+  V
Sbjct: 1  MGIIRLMLRSLALMVVQRHIAASKSTRPSSTGQHSSLALLPIPMWTSPPNTSTHAPNLRV 60

Query: 61 SIGQVAACFGGHGVPGDGTAG--AGFIGGGGLG 80
          S+GQV +CFGG  + G G  G   G  GGG +G
Sbjct: 61 SMGQV-SCFGGGSIGGTGMIGGVTGGFGGGRIG 92

BLAST of Sed0013575.1 vs. ExPASy TrEMBL
Match: U5G562 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G008400 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.6e-07
Identity = 48/91 (52.75%), Postives = 56/91 (61.54%), Query Frame = 0

Query: 1  MGRMSLTFKSLALMVVHRHTAASKSTSPSSTGQHVSF------LW------STHAPSFSV 60
          MGR+ L  +SLAL+ V RHTAASKST PSS+GQH S       +W      STHAP+  V
Sbjct: 1  MGRIRLMLRSLALITVQRHTAASKSTRPSSSGQHSSLALLPIPMWTSPPRTSTHAPNLRV 60

Query: 61 SIGQVAACFGGHGVPGDGTAGAGFIGGGGLG 80
          S+GQV +CFGG G  G    G G  GG G G
Sbjct: 61 SMGQV-SCFGGVG-GGFTIGGVGITGGSGGG 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAB1205160.18.9e-1059.14hypothetical protein CJ030_MR7G022012 [Morella rubra][more]
AFK41124.13.8e-0858.24unknown [Lotus japonicus][more]
KAG6419595.18.4e-0852.81hypothetical protein SASPL_121817 [Salvia splendens][more]
PNT29076.11.6e-0652.75hypothetical protein POPTR_006G008400 [Populus trichocarpa][more]
KAF4399859.17.8e-0652.17hypothetical protein G4B88_021073 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L1W82.1e-1259.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G620620 PE=4 SV=1[more]
A0A6A1V1H84.3e-1059.14Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR7G022012 PE=4 SV=1[more]
I3SLI21.8e-0858.24Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1[more]
A0A6N2KCG41.2e-0752.69Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS10116 PE=4 SV=1[more]
U5G5627.6e-0752.75Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G008400 PE=4 ... [more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Sed0013575Sed0013575gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0013575.1-cdsSed0013575.1-cds-LG06:32328624..32328750CDS
Sed0013575.1-cdsSed0013575.1-cds-LG06:32328787..32328902CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0013575.1-exonSed0013575.1-exon-LG06:32328624..32328750exon
Sed0013575.1-exonSed0013575.1-exon-LG06:32328787..32328902exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Sed0013575.1Sed0013575.1-proteinpolypeptide