Sed0013294.1 (mRNA) Chayote v1

Overview
NameSed0013294.1
TypemRNA
OrganismSechium edule (Chayote v1)
Descriptionsuccinate dehydrogenase subunit 7B, mitochondrial-like
LocationLG08: 879791 .. 883615 (-)
Sequence length762
RNA-Seq ExpressionSed0013294.1
SyntenySed0013294.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGCAAAAAAAATAATGAAAAAAAAAAAAGAAAAAAAAAACTTTACCATATTTGTGCCTGATCTCACAAACCTGTTCTGTTTTCGATCTCGCACTCAAGAAACAATGGCGTTTTTGCTTAACAAAACCAAAATCGCCTCGCATTTTCGATCTCAATCCCAGGTTCTTTCTCCTTCGATCGATTCTTCATTTATCTTCGTTTTTTTTTTCCTTAATCGAATCTATTGCGTTTTTGGTTGATCAATAGGTGGATCCTTCGTCACTTTCGCGCCGCAGATTCCATGTCGAACCAGGAACTCGTGAAAAGGCTGTAAGTAAATTTCTTCCAATCTTTAATTGTTCTTGTGCCGGTTTGTTCGATTGTTTGGATAATCAGTTCCTTATAGCTTATCGCAGCTCCGTTAAGTTAATCGATATCTCGTTGTTGCATGTTCATCTGTTATCGGATGGCTGGCTATCTAGTTCCTTTAGATTTTTTGTATAGATGAAGCTTTTTGTTGATTGATATAATTAAATTTACCCAAATCTATTAGTTTGGGCTTTTGGATTGATGGGTCGTTTAACATAGTTCAACACTCTTCGAAGCTGTGTCGATCGAACTTGTTGAACTCCCAATGAAATAGAGGGGATTGACTATTTTGTGATTATAGTTATGATTCTCTTATTAATAGGTGATGGTCTCTTTTGTAACTTGATTGTCCAATACTTTGTAATTGTTTCTTATCTTTTTTTTAGTAGGAAACAATTTCATTGAGGTTATGAAATTACGGGAAAAATGTCCCGAAACCCCATGGGGGCTGTTTGTTTGACATATTTAGATAAGATTTAGCTTAAGGATTTTTATTGAGTAGTTAAAAATTGAGAGTTGTAGCCAAAAACTCCTTTGGATGTAATTTTTGTTTAGAGGAATTAGTGTCAAAACTTTGTTTGAATGTAGATTTAAAATGAGTAGTTAGTTTTAGTAGTTAAAAAAGAAATGGTTAAAAATGAGTGGTTAAAAATGAGTTATTTTGATCGATTTGAAAAGAATGATAAAAAATGAGTGGTTAGAAATGATTGAGTAGTTATAAATGAATGGTTAGAAATGAGAGTTATTTTTAAAAATAAAAATTACGAGGAGTTAGAAAAACTCGTTTGGATGTAAGTTTTTTAGGAGGAGTTCATAAATCCTAAAACTAAATTCTACCTAAATATGCCAAACAAACAGCCCCATGGGGTTACAAGAATAGTTGCCAATTGGCAATAAAGTATGGTAAATTAATAGTGGAAAAAGTGGGCTTATCTTTGCATAAAAAAAACGCGGGAGAGAATGTTAATTCAAAAAGAGGATCCGATGGCTTCACAATACCTTGGAAAATACGATTGTTTTGCTCCATCCATGTCAACCATAAAAAGGCTCTGCAAAAGGCTAATTAATTGTTTCTTATTCAAAAAACAAAAAAATAAATAGAGGGGATTGGAGATTTCCCTGCTGTTTTGGTAAGTAATTTGTTCTCGTGCTAATAGCATGAAACTGTGGTGAAAAGTGTTATGTTCCTCGTATTGGTGAAAGTTACGGATTTGTTTTGCATTTATTTAGTGTGTTTCTAAACTCTGCAAATTTTTCCACGGTTGGTACTTTCCTGAGAACTATTTACAAAAAATATTTATTCCTTACATTTCTTGAAGAACATTCCTCTTCACGTGTATCCCCCCTCCCTCTAGCCATGTTCGATGGAGATATCTCCGGTGTTATATCTCCTAGACGTGTAGTTGAAACATTGGACTTGTTTATTTCTTTCTTTTTATCTCTTGTATAGAAAGCTCAAAAAATGGCCCTTTCCTTTCTGTAACACTTTCATCCTATTAGTGAAAATGTTTTCGTTGTTGAGTATCGAATTGCAATGATTTATTGCTGGATTGATTTTTACCAAGTTGAATGTCTGGCAGTTATTAGCTGAGGCTCCTTGTCTTAGGCGGTTCAGATCACACAAGAAGAGTGTCTCTCTTATAAAAAAAGTTGGAGATGTTCTGACAATCGTGGTTGTTGCAGGTATTAACCTTTTTGCCGTTTAATAAAATACTTTTATTTTTGTTCATTGGTGTCCTTGCTCTGCTATTTTCTATTATAGCAACATTGATGTAAATGGTGTTGGTTGAATCTTTTGAATGATTATGCCTTTACAAGATTGTCAAGTCTTTACGAGCCCCTTAGAGGTAAAAATTTGCTTCAGGCATTTTGAAGGAAAACAAGCTTGGAGTTTGATATTCTTGGTTTTTGGTTGGTTCTTTTTTTAAAAAAAAAAAATTGGGAAATCAAAACTTCGCTCCCTTATACCTGTGGCACCATGGTCCTTTCCTACACTGTGGCACCAGGAGGTTTTTGGTTGGTTCTTAATGCTACATACGATGGAAAGTAGCTTAAGTGAACTCAAAAAAAAAAAAAATTAACTCAAGTGAACCTAAATGAAAGAGGGGGGGTAGCAGCTTTATTGCATGTTTTGTATTTAGGAGTCTTATCGGGTATCAGTGACTGCAAAAGAAGGAACTTGAGTTTCAAATGTAGAACAAAACGGTATTTGGTAGTTAAACCCTAATGCTTGGGTCGATAGAAAATTTGGATTTTTCTTTTTCTTTTTTGAAAACTGGGAAATCGGAGCTTCACTGCCCTATATTTGGGGTAACCATGCCTCTCCCTAGGCCAGATATTGGAAGACATGGTAGGAAACATAGAAGAAATTTAGGGTCGCCTGGGAAATCAATCCTTAACGCGCCTCAAATCTGAGACCTCAAGGGGAGCCACCCTCAAGGGTCAGACACTTGACCACTGCGTCGCCCTTAGGGGATGCAAATTTGGATTTATCTTGTAAGAACTTGGACCAATTTGTGGATTTCGGAGATGATAAATCACTCAGTTCTGTTATCAAAAAAAGATATTTCATTTAGTTCTACAGTTCATTCGAACTTTTGGGTGGAGCCTAGTCTACAAGAACATCAACAATGGACATCAAAGATGCCGAACTTGTCTATTTTTAAGAGACTGCTAATCTTTTTTTTTTACAGCTATTTTTGTGTGGCAGATTGTTGGGTTCAGTTATGGAACATGTTCATGGTGCTTCCATAAAGATATCTAGTTCTTAGGCCTGAAATTATTTTGGGAAAGTTGTTAAGAGAAGAGGAAAAGATTCTTGGGAATGAATGCTTCAAGAACTTTTTTGTGGGTCATTTGATTAGAAACAAATGACAGAATTTTTAACAACTTAGAAATTCTAGAGAAAAATATTTCATTTCCCTCTTTTTGTATCTCCTGTTATCCTTGAATGAATTTTCTACCTCTTACTCCCTCACCCCAAACAATTTTGTTTTTTTTTTTTACAAAAGAAACTTTGATCTTTGTTATCATATTTTTCAGGATGTTGCTATGAAATCTATGTGAAAGCAACTATGCGAGAAGAAGCTCGACAGGCGAAAACTGCTAGCAGTGCAGGATTAAGTGAATTAGTGTCCAGTGACAATTAAAATGTCTGGCAATAGTTTCCAATGCTTATGTTATTTATGTGCTAAATAAAGGTTTTTGAAGCACCAAATTCTATTTCCCCCATTTCTGTTAGGTTTTATTAATCATCAATAATATTTTTTTGACCTGATACTTTGTATCATCCTAAGGGATATCAGAACATTTTTATCATTGTGAGCACCTCTGTATAACCTTATTTTCTATGCTTTTAAGCTTGAAATAGAACTCACATGGTGGTGGAAGGTGAGCTGAAATTATTGAAGATGGTGAAAGAGGGGATTTTTATTTAGGCTTGAAAAGTGTGTCTGAGTTTCTTTCTTTAAGGATTAA

mRNA sequence

GTGCAAAAAAAATAATGAAAAAAAAAAAAGAAAAAAAAAACTTTACCATATTTGTGCCTGATCTCACAAACCTGTTCTGTTTTCGATCTCGCACTCAAGAAACAATGGCGTTTTTGCTTAACAAAACCAAAATCGCCTCGCATTTTCGATCTCAATCCCAGGTGGATCCTTCGTCACTTTCGCGCCGCAGATTCCATGTCGAACCAGGAACTCGTGAAAAGGCTTTATTAGCTGAGGCTCCTTGTCTTAGGCGGTTCAGATCACACAAGAAGAGTGTCTCTCTTATAAAAAAAGTTGGAGATGTTCTGACAATCGTGGTTGTTGCAGGATGTTGCTATGAAATCTATGTGAAAGCAACTATGCGAGAAGAAGCTCGACAGGCGAAAACTGCTAGCAGTGCAGGATTAAGTGAATTAGTGTCCAGTGACAATTAAAATGTCTGGCAATAGTTTCCAATGCTTATGTTATTTATGTGCTAAATAAAGGTTTTTGAAGCACCAAATTCTATTTCCCCCATTTCTGTTAGGTTTTATTAATCATCAATAATATTTTTTTGACCTGATACTTTGTATCATCCTAAGGGATATCAGAACATTTTTATCATTGTGAGCACCTCTGTATAACCTTATTTTCTATGCTTTTAAGCTTGAAATAGAACTCACATGGTGGTGGAAGGTGAGCTGAAATTATTGAAGATGGTGAAAGAGGGGATTTTTATTTAGGCTTGAAAAGTGTGTCTGAGTTTCTTTCTTTAAGGATTAA

Coding sequence (CDS)

ATGAAAAAAAAAAAAGAAAAAAAAAACTTTACCATATTTGTGCCTGATCTCACAAACCTGTTCTGTTTTCGATCTCGCACTCAAGAAACAATGGCGTTTTTGCTTAACAAAACCAAAATCGCCTCGCATTTTCGATCTCAATCCCAGGTGGATCCTTCGTCACTTTCGCGCCGCAGATTCCATGTCGAACCAGGAACTCGTGAAAAGGCTTTATTAGCTGAGGCTCCTTGTCTTAGGCGGTTCAGATCACACAAGAAGAGTGTCTCTCTTATAAAAAAAGTTGGAGATGTTCTGACAATCGTGGTTGTTGCAGGATGTTGCTATGAAATCTATGTGAAAGCAACTATGCGAGAAGAAGCTCGACAGGCGAAAACTGCTAGCAGTGCAGGATTAAGTGAATTAGTGTCCAGTGACAATTAA

Protein sequence

MKKKKEKKNFTIFVPDLTNLFCFRSRTQETMAFLLNKTKIASHFRSQSQVDPSSLSRRRFHVEPGTREKALLAEAPCLRRFRSHKKSVSLIKKVGDVLTIVVVAGCCYEIYVKATMREEARQAKTASSAGLSELVSSDN
Homology
[Close]
BLAST of Sed0013294.1 vs. NCBI nr
Match: XP_023529214.1 (succinate dehydrogenase subunit 7B, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.4 bits (433), Expect = 5.5e-39
Identity = 89/99 (89.90%), Postives = 91/99 (91.92%), Query Frame = 0 

Query: 31  MAFLLNKTKIASHFRSQSQVDPSSLSRRRFHVEPGTREKALLAEAPCLRRFRSHKKSVSL 90
           MAFLLNKT  ASHFRSQSQVDPSSLSRR FHVEPGTREKALLAE P LRRFRSHKK VS 
Sbjct: 1   MAFLLNKTTFASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 91  IKKVGDVLTIVVVAGCCYEIYVKATMREEARQAKTASSA 130
           IKK+GDVLTIVVVAGCCYEIYVKATMREEARQAKTAS +
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTASGS 99

[Close]
BLAST of Sed0013294.1 vs. NCBI nr
Match: KAG6587488.1 (Succinate dehydrogenase subunit 7B, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021475.1 Succinate dehydrogenase subunit 7B, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.1 bits (427), Expect = 2.7e-38
Identity = 88/99 (88.89%), Postives = 91/99 (91.92%), Query Frame = 0 

Query: 31  MAFLLNKTKIASHFRSQSQVDPSSLSRRRFHVEPGTREKALLAEAPCLRRFRSHKKSVSL 90
           MAFLLNKT +AS FRSQSQVDPSSLSRR FHVEPGTREKALLAE P LRRFRSHKK VS 
Sbjct: 1   MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 91  IKKVGDVLTIVVVAGCCYEIYVKATMREEARQAKTASSA 130
           IKK+GDVLTIVVVAGCCYEIYVKATMREEARQAKTAS +
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKTASGS 99

[Close]
BLAST of Sed0013294.1 vs. NCBI nr
Match: XP_022969157.1 (succinate dehydrogenase subunit 7A, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 168.3 bits (425), Expect = 4.6e-38
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 0 

Query: 31  MAFLLNKTKIASHFRSQSQVDPSSLSRRRFHVEPGTREKALLAEAPCLRRFRSHKKSVSL 90
           MAFLLNKT +ASHFRSQSQ DPS+LSRR FHVEPGTREKALLAE P LRRFRSHKK VS 
Sbjct: 1   MAFLLNKTTLASHFRSQSQADPSTLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 91  IKKVGDVLTIVVVAGCCYEIYVKATMREEARQAKTASSA 130
           IKK+GDVLTIVVVAGCCYEIYV+ATMREEARQAKTAS +
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVRATMREEARQAKTASGS 99

[Close]
BLAST of Sed0013294.1 vs. NCBI nr
Match: XP_022933942.1 (succinate dehydrogenase subunit 7B, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 166.4 bits (420), Expect = 1.8e-37
Identity = 87/99 (87.88%), Postives = 90/99 (90.91%), Query Frame = 0 

Query: 31  MAFLLNKTKIASHFRSQSQVDPSSLSRRRFHVEPGTREKALLAEAPCLRRFRSHKKSVSL 90
           MAFLLNKT +AS FRSQSQVDPSSLSRR FHVEPGTREKALLAE P LRRFRSHKK VS 
Sbjct: 1   MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 91  IKKVGDVLTIVVVAGCCYEIYVKATMREEARQAKTASSA 130
           IKK+GDVLTIVVVAGCCYEIYVKATMREEARQA TAS +
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTASGS 99

[Close]
BLAST of Sed0013294.1 vs. NCBI nr
Match: XP_022921345.1 (succinate dehydrogenase subunit 7B, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 166.0 bits (419), Expect = 2.3e-37
Identity = 85/100 (85.00%), Postives = 90/100 (90.00%), Query Frame = 0 

Query: 30  TMAFLLNKTKIASHFRSQSQVDPSSLSRRRFHVEPGTREKALLAEAPCLRRFRSHKKSVS 89
           TMAFLL KT +ASHFRSQSQVDPSS SRR FH+EPGTREKALLAE P LRRFRSHKK V+
Sbjct: 11  TMAFLLTKTSLASHFRSQSQVDPSSPSRRGFHIEPGTREKALLAEDPSLRRFRSHKKGVA 70

Query: 90  LIKKVGDVLTIVVVAGCCYEIYVKATMREEARQAKTASSA 130
            IKK+GDVLTIVVVAGCCYEIYVKATMREEARQAK AS +
Sbjct: 71  RIKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKAASES 110

[Close]
BLAST of Sed0013294.1 vs. ExPASy Swiss-Prot
Match: Q3E870 (Succinate dehydrogenase subunit 7B, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH7B PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.0e-27
Identity = 65/100 (65.00%), Postives = 77/100 (77.00%), Query Frame = 0 

Query: 31  MAFLLNKTKIASHFRSQSQV---DPSSLSRRRFHVEPGTREKALLAEAPCLRRFRSHKKS 90
           MAFLLN   I+SH RS S     D  S+SRR FH+EPGTREKALLAE   L+RF+SHKKS
Sbjct: 1   MAFLLNNASISSHLRSSSSQKTGDALSISRRGFHIEPGTREKALLAEDSALKRFKSHKKS 60

Query: 91  VSLIKKVGDVLTIVVVAGCCYEIYVKATMREEARQAKTAS 128
           V  +K++GDVLT+VVVAGCCYEIYVKA M++EA  A  +S
Sbjct: 61  VHKLKRIGDVLTVVVVAGCCYEIYVKAVMKKEALAAGKSS 100

[Close]
BLAST of Sed0013294.1 vs. ExPASy Swiss-Prot
Match: Q9C5E8 (Succinate dehydrogenase subunit 7A, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH7A PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.4e-23
Identity = 62/95 (65.26%), Postives = 72/95 (75.79%), Query Frame = 0 

Query: 31  MAFLLNKTKIASHFRSQSQVDPSSL--SRRRFHVEPGTREKALLAEAPCLRRFRSHKKSV 90
           MAFLLN T I+SH RS SQ    +L  SRR FHVE G REKALLAE   LRRF+SHKK V
Sbjct: 1   MAFLLN-TSISSHLRSSSQKTDGALAQSRRGFHVELGAREKALLAEDASLRRFKSHKKGV 60

Query: 91  SLIKKVGDVLTIVVVAGCCYEIYVKATMREEARQA 124
             +K++GDVLT+VVVAGCCYEIY +  MR+EA+ A
Sbjct: 61  HRLKRIGDVLTVVVVAGCCYEIYAR-VMRKEAQAA 93

[Close]
BLAST of Sed0013294.1 vs. ExPASy Swiss-Prot
Match: Q6H611 (Succinate dehydrogenase subunit 7, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH7 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-09
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 0 

Query: 57  RRRFHVEPGTREKALLAEAPCLRRFRSHKKSVSLIKKVGDVLTIVVVAGCCYEIYVKA 115
           RR FHVE G REKALL E   L+RF+S+K SV  + KVG++LT VV+  C YEI   A
Sbjct: 31  RRGFHVELGAREKALLEEDTALKRFKSYKNSVKQVSKVGNILTGVVLFACAYEIVALA 88

[Close]
BLAST of Sed0013294.1 vs. ExPASy TrEMBL
Match: A0A6J1HVK4 (succinate dehydrogenase subunit 7A, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111468234 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.2e-38
Identity = 86/99 (86.87%), Postives = 91/99 (91.92%), Query Frame = 0 

Query: 31  MAFLLNKTKIASHFRSQSQVDPSSLSRRRFHVEPGTREKALLAEAPCLRRFRSHKKSVSL 90
           MAFLLNKT +ASHFRSQSQ DPS+LSRR FHVEPGTREKALLAE P LRRFRSHKK VS 
Sbjct: 1   MAFLLNKTTLASHFRSQSQADPSTLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 91  IKKVGDVLTIVVVAGCCYEIYVKATMREEARQAKTASSA 130
           IKK+GDVLTIVVVAGCCYEIYV+ATMREEARQAKTAS +
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVRATMREEARQAKTASGS 99

[Close]
BLAST of Sed0013294.1 vs. ExPASy TrEMBL
Match: A0A6J1F188 (succinate dehydrogenase subunit 7B, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111441204 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 8.5e-38
Identity = 87/99 (87.88%), Postives = 90/99 (90.91%), Query Frame = 0 

Query: 31  MAFLLNKTKIASHFRSQSQVDPSSLSRRRFHVEPGTREKALLAEAPCLRRFRSHKKSVSL 90
           MAFLLNKT +AS FRSQSQVDPSSLSRR FHVEPGTREKALLAE P LRRFRSHKK VS 
Sbjct: 1   MAFLLNKTALASRFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 91  IKKVGDVLTIVVVAGCCYEIYVKATMREEARQAKTASSA 130
           IKK+GDVLTIVVVAGCCYEIYVKATMREEARQA TAS +
Sbjct: 61  IKKIGDVLTIVVVAGCCYEIYVKATMREEARQAGTASGS 99

[Close]
BLAST of Sed0013294.1 vs. ExPASy TrEMBL
Match: A0A6J1E5D6 (succinate dehydrogenase subunit 7B, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111429643 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.1e-37
Identity = 85/100 (85.00%), Postives = 90/100 (90.00%), Query Frame = 0 

Query: 30  TMAFLLNKTKIASHFRSQSQVDPSSLSRRRFHVEPGTREKALLAEAPCLRRFRSHKKSVS 89
           TMAFLL KT +ASHFRSQSQVDPSS SRR FH+EPGTREKALLAE P LRRFRSHKK V+
Sbjct: 11  TMAFLLTKTSLASHFRSQSQVDPSSPSRRGFHIEPGTREKALLAEDPSLRRFRSHKKGVA 70

Query: 90  LIKKVGDVLTIVVVAGCCYEIYVKATMREEARQAKTASSA 130
            IKK+GDVLTIVVVAGCCYEIYVKATMREEARQAK AS +
Sbjct: 71  RIKKIGDVLTIVVVAGCCYEIYVKATMREEARQAKAASES 110

[Close]
BLAST of Sed0013294.1 vs. ExPASy TrEMBL
Match: A0A6J1C1M2 (succinate dehydrogenase subunit 7B, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111007450 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.5e-37
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 0 

Query: 31  MAFLLNKTKIASHFRSQSQVDPSSLSRRRFHVEPGTREKALLAEAPCLRRFRSHKKSVSL 90
           MAF LN+T +ASHFRSQSQ DPSSLSRR FHVEPGTREKALLAE P LRRFRSHKK VS 
Sbjct: 1   MAFFLNRTTLASHFRSQSQADPSSLSRRGFHVEPGTREKALLAEDPSLRRFRSHKKGVSR 60

Query: 91  IKKVGDVLTIVVVAGCCYEIYVKATMREEARQAKTASSA 130
           IK++GD+LTIVVVAGCCYEIYVKATMREEARQAKTAS +
Sbjct: 61  IKRMGDILTIVVVAGCCYEIYVKATMREEARQAKTASGS 99

[Close]
BLAST of Sed0013294.1 vs. ExPASy TrEMBL
Match: A0A0A0LUC0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005670 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 3.2e-37
Identity = 85/96 (88.54%), Postives = 90/96 (93.75%), Query Frame = 0 

Query: 31  MAFLLNKTKIASHFRSQSQVDPSSLSRRRFHVEPGTREKALLAEAPCLRRFRSHKKSVSL 90
           MAF LNK+ +ASHFRSQSQVDPSSLSRR FHVEPGTREKALLAE PCLRRFRSHKK+VS 
Sbjct: 1   MAFFLNKSTLASHFRSQSQVDPSSLSRRGFHVEPGTREKALLAEDPCLRRFRSHKKAVSR 60

Query: 91  IKKVGDVLTIVVVAGCCYEIYVKATMREEA-RQAKT 126
           +K+VGDVLTIVVVAGCCYEIYVKATMREEA RQAKT
Sbjct: 61  LKRVGDVLTIVVVAGCCYEIYVKATMREEARRQAKT 96

[Close]
BLAST of Sed0013294.1 vs. TAIR 10
Match: AT5G62575.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G47833.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 124.8 bits (312), Expect = 5.5e-29
Identity = 65/99 (65.66%), Postives = 77/99 (77.78%), Query Frame = 0 

Query: 31  MAFLLNKTKIASHFRSQSQV--DPSSLSRRRFHVEPGTREKALLAEAPCLRRFRSHKKSV 90
           MAFLLN   I+SH RS S    D  S+SRR FH+EPGTREKALLAE   L+RF+SHKKSV
Sbjct: 1   MAFLLNNASISSHLRSSSSQTGDALSISRRGFHIEPGTREKALLAEDSALKRFKSHKKSV 60

Query: 91  SLIKKVGDVLTIVVVAGCCYEIYVKATMREEARQAKTAS 128
             +K++GDVLT+VVVAGCCYEIYVKA M++EA  A  +S
Sbjct: 61  HKLKRIGDVLTVVVVAGCCYEIYVKAVMKKEALAAGKSS 99

[Close]
BLAST of Sed0013294.1 vs. TAIR 10
Match: AT5G62575.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G47833.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 124.4 bits (311), Expect = 7.1e-29
Identity = 65/100 (65.00%), Postives = 77/100 (77.00%), Query Frame = 0 

Query: 31  MAFLLNKTKIASHFRSQSQV---DPSSLSRRRFHVEPGTREKALLAEAPCLRRFRSHKKS 90
           MAFLLN   I+SH RS S     D  S+SRR FH+EPGTREKALLAE   L+RF+SHKKS
Sbjct: 1   MAFLLNNASISSHLRSSSSQKTGDALSISRRGFHIEPGTREKALLAEDSALKRFKSHKKS 60

Query: 91  VSLIKKVGDVLTIVVVAGCCYEIYVKATMREEARQAKTAS 128
           V  +K++GDVLT+VVVAGCCYEIYVKA M++EA  A  +S
Sbjct: 61  VHKLKRIGDVLTVVVVAGCCYEIYVKAVMKKEALAAGKSS 100

[Close]
BLAST of Sed0013294.1 vs. TAIR 10
Match: AT3G47833.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62575.2); Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-24
Identity = 62/95 (65.26%), Postives = 72/95 (75.79%), Query Frame = 0 

Query: 31  MAFLLNKTKIASHFRSQSQVDPSSL--SRRRFHVEPGTREKALLAEAPCLRRFRSHKKSV 90
           MAFLLN T I+SH RS SQ    +L  SRR FHVE G REKALLAE   LRRF+SHKK V
Sbjct: 1   MAFLLN-TSISSHLRSSSQKTDGALAQSRRGFHVELGAREKALLAEDASLRRFKSHKKGV 60

Query: 91  SLIKKVGDVLTIVVVAGCCYEIYVKATMREEARQA 124
             +K++GDVLT+VVVAGCCYEIY +  MR+EA+ A
Sbjct: 61  HRLKRIGDVLTVVVVAGCCYEIYAR-VMRKEAQAA 93

The following BLAST results are available for this feature:
BLAST of Sed0013294.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023529214.15.5e-3989.90succinate dehydrogenase subunit 7B, mitochondrial-like [Cucurbita pepo subsp. pe... [more]
KAG6587488.12.7e-3888.89Succinate dehydrogenase subunit 7B, mitochondrial, partial [Cucurbita argyrosper... [more]
XP_022969157.14.6e-3886.87succinate dehydrogenase subunit 7A, mitochondrial-like [Cucurbita maxima][more]
XP_022933942.11.8e-3787.88succinate dehydrogenase subunit 7B, mitochondrial-like [Cucurbita moschata][more]
XP_022921345.12.3e-3785.00succinate dehydrogenase subunit 7B, mitochondrial-like [Cucurbita moschata][more]
BLAST of Sed0013294.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3E8701.0e-2765.00Succinate dehydrogenase subunit 7B, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
Q9C5E84.4e-2365.26Succinate dehydrogenase subunit 7A, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
Q6H6111.6e-0956.90Succinate dehydrogenase subunit 7, mitochondrial OS=Oryza sativa subsp. japonica... [more]
BLAST of Sed0013294.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HVK42.2e-3886.87succinate dehydrogenase subunit 7A, mitochondrial-like OS=Cucurbita maxima OX=36... [more]
A0A6J1F1888.5e-3887.88succinate dehydrogenase subunit 7B, mitochondrial-like OS=Cucurbita moschata OX=... [more]
A0A6J1E5D61.1e-3785.00succinate dehydrogenase subunit 7B, mitochondrial-like OS=Cucurbita moschata OX=... [more]
A0A6J1C1M21.5e-3784.85succinate dehydrogenase subunit 7B, mitochondrial-like OS=Momordica charantia OX... [more]
A0A0A0LUC03.2e-3788.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005670 PE=4 SV=1[more]
BLAST of Sed0013294.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G62575.15.5e-2965.66unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G62575.27.1e-2965.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G47833.13.1e-2465.26unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034573Succinate dehydrogenase subunit 7, mitochondrialPANTHERPTHR36041SUCCINATE DEHYDROGENASE SUBUNIT 7A, MITOCHONDRIAL-RELATEDcoord: 31..126

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Sed0013294Sed0013294gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0013294.1-exonSed0013294.1-exon-LG08:879791..880225exon
Sed0013294.1-exonSed0013294.1-exon-LG08:881585..881687exon
Sed0013294.1-exonSed0013294.1-exon-LG08:883307..883369exon
Sed0013294.1-exonSed0013294.1-exon-LG08:883455..883615exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0013294.1-three_prime_utrSed0013294.1-three_prime_utr-LG08:879791..880118three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0013294.1-cdsSed0013294.1-cds-LG08:880119..880225CDS
Sed0013294.1-cdsSed0013294.1-cds-LG08:881585..881687CDS
Sed0013294.1-cdsSed0013294.1-cds-LG08:883307..883369CDS
Sed0013294.1-cdsSed0013294.1-cds-LG08:883455..883601CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0013294.1-five_prime_utrSed0013294.1-five_prime_utr-LG08:883602..883615five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Sed0013294.1Sed0013294.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
molecular_function GO:0043495 protein-membrane adaptor activity