Sed0013252.1 (mRNA) Chayote v1

Overview


Name	Sed0013252.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	CLAVATA3/ESR-RELATED
Location	LG12: 30560889 .. 30561576 (-)
Sequence length	688
RNA-Seq Expression	Sed0013252.1
Synteny	Sed0013252.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGATAAACCCCAATAGCTTAAACTCTCACAGGAATTTGTCATAAACAAAATTGGTTCAAGTTCCTGTCTTGCAAGCCTCAAATTGAGCTCCCCACATTGTTTCTTTGTTTTCTCTTCAAATTCTTTCAAATCAAAGTGAAATTAGAAAATGGGGTTCTTGCTTAACAGTAAAGCTTTGATCTTTATCATTTTTCTTACTGGTTTTTCTATGTTTCTTCAACCTCAAACAGCATCTGGGCTTAGCTCCATTGATCTTGCTCTCAAATGGGTAGCTTTCAAATCTCCAATGATCTACACCCACAAGGCTGATTCTGTTAAAAAGTTCAACATGAAGAAGATGAACTTGGCAGCTCCATCACCCGCAATGAGCTTCGACCCGAACCAATCCGACAAACGAGGAGTCAAGAAAGGATCCGACCCGATTCACAACAAAAGAGGAGGAAGCTGATTTCATTTCATTTGATTTCCAACTCCCTTTGTGCTTACTTTTGATTAGTTTCTTGAAAAAGGGGGTTAGTTGAATTTCATATAGATATCATTTTCTTTCTCCTTTGGTTTTTGCTTGAATTAAATAGGTTCAACAGGTTATTGTATAGTTTTGAAACTTTTTTTTTCCATCTCAGTCACATCAATTTTATATCTTGCTTTAGAATATAGAACAGGCCATACATCATGTAGTAGAGAG

mRNA sequence

AAAAGATAAACCCCAATAGCTTAAACTCTCACAGGAATTTGTCATAAACAAAATTGGTTCAAGTTCCTGTCTTGCAAGCCTCAAATTGAGCTCCCCACATTGTTTCTTTGTTTTCTCTTCAAATTCTTTCAAATCAAAGTGAAATTAGAAAATGGGGTTCTTGCTTAACAGTAAAGCTTTGATCTTTATCATTTTTCTTACTGGTTTTTCTATGTTTCTTCAACCTCAAACAGCATCTGGGCTTAGCTCCATTGATCTTGCTCTCAAATGGGTAGCTTTCAAATCTCCAATGATCTACACCCACAAGGCTGATTCTGTTAAAAAGTTCAACATGAAGAAGATGAACTTGGCAGCTCCATCACCCGCAATGAGCTTCGACCCGAACCAATCCGACAAACGAGGAGTCAAGAAAGGATCCGACCCGATTCACAACAAAAGAGGAGGAAGCTGATTTCATTTCATTTGATTTCCAACTCCCTTTGTGCTTACTTTTGATTAGTTTCTTGAAAAAGGGGGTTAGTTGAATTTCATATAGATATCATTTTCTTTCTCCTTTGGTTTTTGCTTGAATTAAATAGGTTCAACAGGTTATTGTATAGTTTTGAAACTTTTTTTTTCCATCTCAGTCACATCAATTTTATATCTTGCTTTAGAATATAGAACAGGCCATACATCATGTAGTAGAGAG

Coding sequence (CDS)

ATGGGGTTCTTGCTTAACAGTAAAGCTTTGATCTTTATCATTTTTCTTACTGGTTTTTCTATGTTTCTTCAACCTCAAACAGCATCTGGGCTTAGCTCCATTGATCTTGCTCTCAAATGGGTAGCTTTCAAATCTCCAATGATCTACACCCACAAGGCTGATTCTGTTAAAAAGTTCAACATGAAGAAGATGAACTTGGCAGCTCCATCACCCGCAATGAGCTTCGACCCGAACCAATCCGACAAACGAGGAGTCAAGAAAGGATCCGACCCGATTCACAACAAAAGAGGAGGAAGCTGA

Protein sequence

MGFLLNSKALIFIIFLTGFSMFLQPQTASGLSSIDLALKWVAFKSPMIYTHKADSVKKFNMKKMNLAAPSPAMSFDPNQSDKRGVKKGSDPIHNKRGGS

Homology

[Close]

BLAST of Sed0013252.1 vs. NCBI nr
Match: KAG6587538.1 (hypothetical protein SDJN03_16103, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128.6 bits (322), Expect = 2.9e-26
Identity = 65/92 (70.65%), Postives = 78/92 (84.78%), Query Frame = 0


Query: 4  LLNSKALIFIIFLTGFSMFLQPQTASGLSSIDLALKWVAFKSPMIYTHKADSVKKFNMKK 63
          +L++KAL+F + L G S+ +QPQTASGL++IDLALKWVAFKSP+  TH  DSVKK  MK 
Sbjct: 1  MLSTKALVFALLLAGVSLCVQPQTASGLTTIDLALKWVAFKSPITNTHNPDSVKKLKMKN 60

Query: 64 MNLAAPSPAMSFDPNQSDKRGVKKGSDPIHNK 96
          M+L APSPAM FDPNQS+KRGVKKGSDPIHN+
Sbjct: 61 MSL-APSPAMHFDPNQSNKRGVKKGSDPIHNR 91

[Close]

BLAST of Sed0013252.1 vs. NCBI nr
Match: KAG6589506.1 (hypothetical protein SDJN03_14929, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.2 bits (313), Expect = 3.2e-25
Identity = 69/97 (71.13%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 1  MGFLLNSKALIFIIFLTGFSM-FLQPQTASGLSSIDLALKWVAFKSPMIYTHKA-DSVKK 60
          MGFL   K L F+  L GF    LQPQTASGL++ID+ALKWVAFKSP I+THKA DS KK
Sbjct: 1  MGFLFCRKVLFFLFLLAGFVFSLLQPQTASGLATIDVALKWVAFKSPAIHTHKADDSEKK 60

Query: 61 FNMKKMNLAAPSPAMSFDPNQSDKRGVKKGSDPIHNK 96
           NMK MN+ APSPAM+FDPNQS+KR VKKGSDPIHN+
Sbjct: 61 LNMKNMNV-APSPAMNFDPNQSNKRRVKKGSDPIHNR 96

[Close]

BLAST of Sed0013252.1 vs. NCBI nr
Match: KGN63668.1 (hypothetical protein Csa_014085 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 3.8e-18
Identity = 62/100 (62.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 1  MGFLLNSKALIFIIFLTGFSMFL---QPQ-TASGLSSIDLALKWVAFKSP-MIYTHKADS 60
          MG L + K L F+  +  F + +   QPQ TA+GLS+ID ALKWVAFKS   I THKADS
Sbjct: 1  MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60

Query: 61 VKKFNMKKMNLAAPSPAMSFDPNQSDKRGVKKGSDPIHNK 96
            +   K +NLAAPSPAM+FDPNQS+KRGVKKGSDPIHN+
Sbjct: 61 SDE---KNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNR 97

[Close]

BLAST of Sed0013252.1 vs. NCBI nr
Match: PQQ10203.1 (hypothetical protein Pyn_16404 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-09
Identity = 44/96 (45.83%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 1  MGFLLNSKALIFIIFLTGFSMFLQPQTASGLSSIDLALKW-VAFKSPMIYTHKADSVKKF 60
          MGFL    A++F+    GF + LQP+  SGL S+DLAL+W     S +   H  ++V   
Sbjct: 1  MGFLAYRSAVLFVCI--GF-LALQPEKVSGLRSMDLALRWDKGHMSFLKSLHLVEAVAVE 60

Query: 61 NMKKMNLAAPSPAMSFDPNQSDKRGVKKGSDPIHNK 96
          +++     AP+P+M+FDPNQS+KR V+KGSDPIHN+
Sbjct: 61 DLQAKLSLAPAPSMTFDPNQSNKRKVRKGSDPIHNR 93

[Close]

BLAST of Sed0013252.1 vs. NCBI nr
Match: OMP04794.1 (hypothetical protein COLO4_09292 [Corchorus olitorius])

HSP 1 Score: 72.4 bits (176), Expect = 2.5e-09
Identity = 46/98 (46.94%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 1  MGFLLNSKALIFIIFLTGFSMFLQPQTASGLSSIDLALKWVAFKSPMIYTH---KADSVK 60
          MGF +N   L+ +  ++   + LQP+  SGL SIDLAL+W     P +      KAD+  
Sbjct: 1  MGFSVNRGFLLLLACIS--LLVLQPEMVSGLRSIDLALRWDKGLLPFVRNSRFLKADAAV 60

Query: 61 KFNMKKMNLAAPSPAMSFDPNQSDKRGVKKGSDPIHNK 96
               + +L APSP+M FDPNQSDKR V+KGSDPIHN+
Sbjct: 61 DSLQTRPSL-APSPSMMFDPNQSDKRRVRKGSDPIHNR 95

[Close]

BLAST of Sed0013252.1 vs. ExPASy TrEMBL
Match: A0A0A0LPD5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009720 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.8e-18
Identity = 62/100 (62.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 1  MGFLLNSKALIFIIFLTGFSMFL---QPQ-TASGLSSIDLALKWVAFKSP-MIYTHKADS 60
          MG L + K L F+  +  F + +   QPQ TA+GLS+ID ALKWVAFKS   I THKADS
Sbjct: 1  MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60

Query: 61 VKKFNMKKMNLAAPSPAMSFDPNQSDKRGVKKGSDPIHNK 96
            +   K +NLAAPSPAM+FDPNQS+KRGVKKGSDPIHN+
Sbjct: 61 SDE---KNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNR 97

[Close]

BLAST of Sed0013252.1 vs. ExPASy TrEMBL
Match: A0A314YU30 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_16404 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.1e-10
Identity = 44/96 (45.83%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 1  MGFLLNSKALIFIIFLTGFSMFLQPQTASGLSSIDLALKW-VAFKSPMIYTHKADSVKKF 60
          MGFL    A++F+    GF + LQP+  SGL S+DLAL+W     S +   H  ++V   
Sbjct: 1  MGFLAYRSAVLFVCI--GF-LALQPEKVSGLRSMDLALRWDKGHMSFLKSLHLVEAVAVE 60

Query: 61 NMKKMNLAAPSPAMSFDPNQSDKRGVKKGSDPIHNK 96
          +++     AP+P+M+FDPNQS+KR V+KGSDPIHN+
Sbjct: 61 DLQAKLSLAPAPSMTFDPNQSNKRKVRKGSDPIHNR 93

[Close]

BLAST of Sed0013252.1 vs. ExPASy TrEMBL
Match: A0A1R3KCL9 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_09292 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 46/98 (46.94%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 1  MGFLLNSKALIFIIFLTGFSMFLQPQTASGLSSIDLALKWVAFKSPMIYTH---KADSVK 60
          MGF +N   L+ +  ++   + LQP+  SGL SIDLAL+W     P +      KAD+  
Sbjct: 1  MGFSVNRGFLLLLACIS--LLVLQPEMVSGLRSIDLALRWDKGLLPFVRNSRFLKADAAV 60

Query: 61 KFNMKKMNLAAPSPAMSFDPNQSDKRGVKKGSDPIHNK 96
               + +L APSP+M FDPNQSDKR V+KGSDPIHN+
Sbjct: 61 DSLQTRPSL-APSPSMMFDPNQSDKRRVRKGSDPIHNR 95

[Close]

BLAST of Sed0013252.1 vs. ExPASy TrEMBL
Match: M5WYZ5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193600 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.0e-09
Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 1  MGFLLNSKALIFIIFLTGFSMFLQPQTASGLSSIDLALKW-VAFKSPMIYTHKADSVKKF 60
          MGFL    A++F+    GF + LQP+  SGL S+DLAL+W     S +   H   +V   
Sbjct: 1  MGFLAYRSAVLFVCI--GF-LALQPEKVSGLRSMDLALRWDKGHMSFLKSLHLVKAVAVE 60

Query: 61 NMKKMNLAAPSPAMSFDPNQSDKRGVKKGSDPIHNK 96
          +++     AP+P+M+FDPNQS+KR V+KGSDPIHN+
Sbjct: 61 DLQAKLSLAPAPSMTFDPNQSNKRKVRKGSDPIHNR 93

[Close]

BLAST of Sed0013252.1 vs. ExPASy TrEMBL
Match: A0A314XM06 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_31163 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.0e-09
Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 1  MGFLLNSKALIFIIFLTGFSMFLQPQTASGLSSIDLALKW-VAFKSPMIYTHKADSVKKF 60
          MGFL    A++F+    GF + LQP+  SGL S+DLAL+W     S +   H   +V   
Sbjct: 1  MGFLAYRSAVLFVCI--GF-LALQPEKVSGLRSMDLALRWDKGHMSFLKSLHLVKAVAVE 60

Query: 61 NMKKMNLAAPSPAMSFDPNQSDKRGVKKGSDPIHNK 96
          +++     AP+P+M+FDPNQS+KR V+KGSDPIHN+
Sbjct: 61 DLQAKLSLAPAPSMTFDPNQSNKRKVRKGSDPIHNR 93

The following BLAST results are available for this feature:

BLAST of Sed0013252.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587538.1	2.9e-26	70.65	hypothetical protein SDJN03_16103, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6589506.1	3.2e-25	71.13	hypothetical protein SDJN03_14929, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN63668.1	3.8e-18	62.00	hypothetical protein Csa_014085 [Cucumis sativus]	[more]
PQQ10203.1	1.9e-09	45.83	hypothetical protein Pyn_16404 [Prunus yedoensis var. nudiflora]	[more]
OMP04794.1	2.5e-09	46.94	hypothetical protein COLO4_09292 [Corchorus olitorius]	[more]

BLAST of Sed0013252.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0013252.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPD5	1.8e-18	62.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009720 PE=4 SV=1	[more]
A0A314YU30	9.1e-10	45.83	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_164...	[more]
A0A1R3KCL9	1.2e-09	46.94	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_09292 PE=4 SV=1	[more]
M5WYZ5	2.0e-09	45.83	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193600 PE=4 SV=1	[more]
A0A314XM06	2.0e-09	45.83	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_311...	[more]

BLAST of Sed0013252.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..99
None	No IPR available	PANTHER	PTHR36726:SF5	CLAVATA3/ESR (CLE) GENE FAMILY MEMBER MTCLE11	coord: 1..95
IPR038821	CLE-related protein 45-like	PANTHER	PTHR36726	CLAVATA3/ESR (CLE)-RELATED PROTEIN 45	coord: 1..95

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0013252	Sed0013252	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013252.1-exon	Sed0013252.1-exon-LG12:30560889..30561576	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013252.1-three_prime_utr	Sed0013252.1-three_prime_utr-LG12:30560889..30561125	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013252.1-cds	Sed0013252.1-cds-LG12:30561126..30561425	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013252.1-five_prime_utr	Sed0013252.1-five_prime_utr-LG12:30561426..30561576	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0013252.1	Sed0013252.1-protein	polypeptide