Sed0013123.1 (mRNA) Chayote v1

Overview


Name	Sed0013123.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Epidermal patterning factor-like protein
Location	LG12: 33642854 .. 33643858 (-)
Sequence length	907
RNA-Seq Expression	Sed0013123.1
Synteny	Sed0013123.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGAATCTCCAATTTTTCTCTCAATCTCTCTCCAAACATGGCTTTAAAAAACTCTCTCTTTCTCATTCTCCCTCTCATATTTTGCCTTTCTCTATCTCACCCCACATCAGGTATTGATTATCCCAACATTAGTACTAATCCAACTTAGGGAACCATTTATGATATCATAATATGATTTTGTTGGGGTTTTTTGTCTTTGTAATCTCAGGGGATGAGGATTCAAAGCAGAAGGAATTGGTAATTGGGTCAAGGCCACCACAGTGTTTCAGTAAGTGCTTAAATTGCAGGCCATGTGTTGCTGCTTTGGTTATCTCTCAGCGCCATAAAGCTGATGATAATTATGGTGTTGCTGTTTCTAATTTGGAGTCTGCTCAAATCCCTAAAGATGATGCCTATTATCTTCTTTCATGGAAATGTAAGTGTAGAGATAAGTACTTTCAACCTTGAAAAAAACACATAGGGGTGTTTGGAGCAAAAGAATATAGGGTATAATGGTTAGTCGAGGTTGCGCACCCCCCCTTTAGATCGTTCTATTCGTGCTTGAAAAGGTTATATGTGTTTAGGATGAAGGAAATGATTATGCTGAGAGTGGGAACAAAATGTTATTTATGGCAGGTTGTATATTGGTTACGAGGATGAAAAGTAGTTATAGGGTAATGAAAAGTGATCGTGAAGGAATGAGATTATGAAAGGGAGGAATAGTGATTATGGAAAGAATGATTGTCAGTGGTACAAACGTAGGTAAGGGAATTATTCTCCATCTTTCCGATTTGATCCCCTTCCCCAAACACCCTTTTAATAACTTCCATCTGCTCATCTCCATGAATCAGAATATATTGATTCTCGAGAGAGATTTTTGTTGGTGTTTTTCTCTTTTCCTCTGTTTTTCTTGAGAAATTGAATAGACCAATGAATCTCTCTTTCTTGAGATATGAACATAAATTACTAGATTGTGTAATAAGTTAGTTGTTTTCTTGAATCAAATGCATGGTTTGTCCTAAATT

mRNA sequence

TTTGAATCTCCAATTTTTCTCTCAATCTCTCTCCAAACATGGCTTTAAAAAACTCTCTCTTTCTCATTCTCCCTCTCATATTTTGCCTTTCTCTATCTCACCCCACATCAGGGGATGAGGATTCAAAGCAGAAGGAATTGGTAATTGGGTCAAGGCCACCACAGTGTTTCAGTAAGTGCTTAAATTGCAGGCCATGTGTTGCTGCTTTGGTTATCTCTCAGCGCCATAAAGCTGATGATAATTATGGTGTTGCTGTTTCTAATTTGGAGTCTGCTCAAATCCCTAAAGATGATGCCTATTATCTTCTTTCATGGAAATGTAAGTGTAGAGATAAGTACTTTCAACCTTGAAAAAAACACATAGGGGTGTTTGGAGCAAAAGAATATAGGGTATAATGGTTAGTCGAGGTTGCGCACCCCCCCTTTAGATCGTTCTATTCGTGCTTGAAAAGGTTATATGTGTTTAGGATGAAGGAAATGATTATGCTGAGAGTGGGAACAAAATGTTATTTATGGCAGGTTGTATATTGGTTACGAGGATGAAAAGTAGTTATAGGGTAATGAAAAGTGATCGTGAAGGAATGAGATTATGAAAGGGAGGAATAGTGATTATGGAAAGAATGATTGTCAGTGGTACAAACGTAGGTAAGGGAATTATTCTCCATCTTTCCGATTTGATCCCCTTCCCCAAACACCCTTTTAATAACTTCCATCTGCTCATCTCCATGAATCAGAATATATTGATTCTCGAGAGAGATTTTTGTTGGTGTTTTTCTCTTTTCCTCTGTTTTTCTTGAGAAATTGAATAGACCAATGAATCTCTCTTTCTTGAGATATGAACATAAATTACTAGATTGTGTAATAAGTTAGTTGTTTTCTTGAATCAAATGCATGGTTTGTCCTAAATT

Coding sequence (CDS)

ATGGCTTTAAAAAACTCTCTCTTTCTCATTCTCCCTCTCATATTTTGCCTTTCTCTATCTCACCCCACATCAGGGGATGAGGATTCAAAGCAGAAGGAATTGGTAATTGGGTCAAGGCCACCACAGTGTTTCAGTAAGTGCTTAAATTGCAGGCCATGTGTTGCTGCTTTGGTTATCTCTCAGCGCCATAAAGCTGATGATAATTATGGTGTTGCTGTTTCTAATTTGGAGTCTGCTCAAATCCCTAAAGATGATGCCTATTATCTTCTTTCATGGAAATGTAAGTGTAGAGATAAGTACTTTCAACCTTGA

Protein sequence

MALKNSLFLILPLIFCLSLSHPTSGDEDSKQKELVIGSRPPQCFSKCLNCRPCVAALVISQRHKADDNYGVAVSNLESAQIPKDDAYYLLSWKCKCRDKYFQP

Homology

[Close]

BLAST of Sed0013123.1 vs. NCBI nr
Match: XP_022933441.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 isoform X2 [Cucurbita moschata] >KAG7021781.1 EPIDERMAL PATTERNING FACTOR-like protein 8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185.7 bits (470), Expect = 2.1e-43
Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 1   MALKNSLFLILPLIFCLSLSHPTSGDEDSKQKELVIGSRPPQCFSKCLNCRPCVAALVIS 60
           MAL NSLFLILPLIF LS+ HPTSG+EDSKQKEL IGSRPP+CF+KCLNC+PCVAALVIS
Sbjct: 1   MALNNSLFLILPLIFSLSVFHPTSGNEDSKQKELAIGSRPPKCFNKCLNCKPCVAALVIS 60

Query: 61  QRHKADD-NYGVAVSNLESAQIPKDDAYYLLSWKCKCRDKYFQP 104
           QRHK DD N G  VSNLE+AQ+PKDDAYYLLSWKCKC+DKYFQP
Sbjct: 61  QRHKGDDSNNGGVVSNLEAAQVPKDDAYYLLSWKCKCKDKYFQP 104

[Close]

BLAST of Sed0013123.1 vs. NCBI nr
Match: XP_023531007.1 (EPIDERMAL PATTERNING FACTOR-like protein 1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 185.7 bits (470), Expect = 2.1e-43
Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 1   MALKNSLFLILPLIFCLSLSHPTSGDEDSKQKELVIGSRPPQCFSKCLNCRPCVAALVIS 60
           MAL NSLFLILPLIF LS+ HPTSG+EDSKQKEL IGSRPP+CF+KCLNC+PCVAALVIS
Sbjct: 50  MALNNSLFLILPLIFSLSVFHPTSGNEDSKQKELAIGSRPPKCFNKCLNCKPCVAALVIS 109

Query: 61  QRHKADD-NYGVAVSNLESAQIPKDDAYYLLSWKCKCRDKYFQP 104
           QRHK DD N G  VSNLE+AQ+PKDDAYYLLSWKCKC+DKYFQP
Sbjct: 110 QRHKGDDSNNGGVVSNLEAAQVPKDDAYYLLSWKCKCKDKYFQP 153

[Close]

BLAST of Sed0013123.1 vs. NCBI nr
Match: XP_022933440.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 isoform X1 [Cucurbita moschata] >KAG6587897.1 EPIDERMAL PATTERNING FACTOR-like protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179.5 bits (454), Expect = 1.5e-41
Identity = 87/109 (79.82%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 1   MALKNSLFLILPLIFCLSLSHPT-----SGDEDSKQKELVIGSRPPQCFSKCLNCRPCVA 60
           MAL NSLFLILPLIF LS+ HPT     SG+EDSKQKEL IGSRPP+CF+KCLNC+PCVA
Sbjct: 1   MALNNSLFLILPLIFSLSVFHPTSVLGISGNEDSKQKELAIGSRPPKCFNKCLNCKPCVA 60

Query: 61  ALVISQRHKADD-NYGVAVSNLESAQIPKDDAYYLLSWKCKCRDKYFQP 104
           ALVISQRHK DD N G  VSNLE+AQ+PKDDAYYLLSWKCKC+DKYFQP
Sbjct: 61  ALVISQRHKGDDSNNGGVVSNLEAAQVPKDDAYYLLSWKCKCKDKYFQP 109

[Close]

BLAST of Sed0013123.1 vs. NCBI nr
Match: XP_023531006.1 (EPIDERMAL PATTERNING FACTOR-like protein 1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.5 bits (454), Expect = 1.5e-41
Identity = 87/109 (79.82%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 1   MALKNSLFLILPLIFCLSLSHPT-----SGDEDSKQKELVIGSRPPQCFSKCLNCRPCVA 60
           MAL NSLFLILPLIF LS+ HPT     SG+EDSKQKEL IGSRPP+CF+KCLNC+PCVA
Sbjct: 50  MALNNSLFLILPLIFSLSVFHPTSVLGISGNEDSKQKELAIGSRPPKCFNKCLNCKPCVA 109

Query: 61  ALVISQRHKADD-NYGVAVSNLESAQIPKDDAYYLLSWKCKCRDKYFQP 104
           ALVISQRHK DD N G  VSNLE+AQ+PKDDAYYLLSWKCKC+DKYFQP
Sbjct: 110 ALVISQRHKGDDSNNGGVVSNLEAAQVPKDDAYYLLSWKCKCKDKYFQP 158

[Close]

BLAST of Sed0013123.1 vs. NCBI nr
Match: XP_022971966.1 (EPIDERMAL PATTERNING FACTOR-like protein 1 isoform X2 [Cucurbita maxima])

HSP 1 Score: 174.5 bits (441), Expect = 4.8e-40
Identity = 83/104 (79.81%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 1   MALKNSLFLILPLIFCLSLSHPTSGDEDSKQKELVIGSRPPQCFSKCLNCRPCVAALVIS 60
           MAL NSLFLILPLIF LS+  PTSG+EDSKQKEL IGSRPP+CF+KCLNC+PCVAALVIS
Sbjct: 67  MALNNSLFLILPLIFSLSVFLPTSGNEDSKQKELAIGSRPPKCFNKCLNCKPCVAALVIS 126

Query: 61  QRHKA-DDNYGVAVSNLESAQIPKDDAYYLLSWKCKCRDKYFQP 104
           QR K  D+N G  VSN+E+AQ+PKDDAYYLLSWKCKC+DKYFQP
Sbjct: 127 QRLKGYDNNNGGVVSNMEAAQVPKDDAYYLLSWKCKCKDKYFQP 170

[Close]

BLAST of Sed0013123.1 vs. ExPASy Swiss-Prot
Match: Q1G3V9 (EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=EPFL8 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.5e-09
Identity = 33/99 (33.33%), Postives = 49/99 (49.49%), Query Frame = 0


Query: 6   SLFLILPLIFCLSLSHPTSGDEDSKQKELVIGSRPPQCFSKCLNCRPCVAALV-ISQRHK 65
           ++F  L  + C+S +H        + KE V+GS PP C +KC NC+PC+  L  I   H 
Sbjct: 20  NIFFSLLSLHCISGAH----GHQQRMKESVMGSEPPVCATKCRNCKPCLPYLFDIRGAHD 79

Query: 66  ADDNYGVAVSNLESAQIPKDDAYYLLSWKCKCRDKYFQP 104
            DD+                + YY + W C+CRD+ F+P
Sbjct: 80  DDDD---------------SEPYYPVKWICRCRDRVFEP 99

[Close]

BLAST of Sed0013123.1 vs. ExPASy Swiss-Prot
Match: Q9LFT5 (EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EPFL1 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.4e-04
Identity = 32/121 (26.45%), Postives = 52/121 (42.98%), Query Frame = 0


Query: 2   ALKNSLFLILPLIFCLSLSHPTSG------DEDSKQKELV-----IGSRPPQCFSKCLNC 61
           A+  S  L+LPLI  L ++   S          S Q  L+     +GS PP C ++C NC
Sbjct: 3   AIYKSTLLLLPLILILLITPQVSSFLQPIQPPISPQVALIEDKARLGSTPPSCHNRCNNC 62

Query: 62  RPCVAALV--------ISQRHKADDNYGVAVSNLESAQIPKDDAYYLLSWKCKCRDKYFQ 104
            PC+A  V         ++ +     +    S+L +  + +   Y  + WKC C   ++ 
Sbjct: 63  HPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTV-LDQYSNYKPMGWKCHCNGHFYN 122

[Close]

BLAST of Sed0013123.1 vs. ExPASy TrEMBL
Match: A0A6J1EZ19 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111440854 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.0e-43
Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 1   MALKNSLFLILPLIFCLSLSHPTSGDEDSKQKELVIGSRPPQCFSKCLNCRPCVAALVIS 60
           MAL NSLFLILPLIF LS+ HPTSG+EDSKQKEL IGSRPP+CF+KCLNC+PCVAALVIS
Sbjct: 1   MALNNSLFLILPLIFSLSVFHPTSGNEDSKQKELAIGSRPPKCFNKCLNCKPCVAALVIS 60

Query: 61  QRHKADD-NYGVAVSNLESAQIPKDDAYYLLSWKCKCRDKYFQP 104
           QRHK DD N G  VSNLE+AQ+PKDDAYYLLSWKCKC+DKYFQP
Sbjct: 61  QRHKGDDSNNGGVVSNLEAAQVPKDDAYYLLSWKCKCKDKYFQP 104

[Close]

BLAST of Sed0013123.1 vs. ExPASy TrEMBL
Match: A0A6J1F4W6 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111440854 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 7.2e-42
Identity = 87/109 (79.82%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 1   MALKNSLFLILPLIFCLSLSHPT-----SGDEDSKQKELVIGSRPPQCFSKCLNCRPCVA 60
           MAL NSLFLILPLIF LS+ HPT     SG+EDSKQKEL IGSRPP+CF+KCLNC+PCVA
Sbjct: 1   MALNNSLFLILPLIFSLSVFHPTSVLGISGNEDSKQKELAIGSRPPKCFNKCLNCKPCVA 60

Query: 61  ALVISQRHKADD-NYGVAVSNLESAQIPKDDAYYLLSWKCKCRDKYFQP 104
           ALVISQRHK DD N G  VSNLE+AQ+PKDDAYYLLSWKCKC+DKYFQP
Sbjct: 61  ALVISQRHKGDDSNNGGVVSNLEAAQVPKDDAYYLLSWKCKCKDKYFQP 109

[Close]

BLAST of Sed0013123.1 vs. ExPASy TrEMBL
Match: A0A6J1I4N2 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111470622 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.3e-40
Identity = 83/104 (79.81%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 1   MALKNSLFLILPLIFCLSLSHPTSGDEDSKQKELVIGSRPPQCFSKCLNCRPCVAALVIS 60
           MAL NSLFLILPLIF LS+  PTSG+EDSKQKEL IGSRPP+CF+KCLNC+PCVAALVIS
Sbjct: 67  MALNNSLFLILPLIFSLSVFLPTSGNEDSKQKELAIGSRPPKCFNKCLNCKPCVAALVIS 126

Query: 61  QRHKA-DDNYGVAVSNLESAQIPKDDAYYLLSWKCKCRDKYFQP 104
           QR K  D+N G  VSN+E+AQ+PKDDAYYLLSWKCKC+DKYFQP
Sbjct: 127 QRLKGYDNNNGGVVSNMEAAQVPKDDAYYLLSWKCKCKDKYFQP 170

[Close]

BLAST of Sed0013123.1 vs. ExPASy TrEMBL
Match: A0A6J1I8G8 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111470622 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.7e-38
Identity = 83/109 (76.15%), Postives = 93/109 (85.32%), Query Frame = 0


Query: 1   MALKNSLFLILPLIFCLSLSHPTS-----GDEDSKQKELVIGSRPPQCFSKCLNCRPCVA 60
           MAL NSLFLILPLIF LS+  PTS     G+EDSKQKEL IGSRPP+CF+KCLNC+PCVA
Sbjct: 67  MALNNSLFLILPLIFSLSVFLPTSVLGITGNEDSKQKELAIGSRPPKCFNKCLNCKPCVA 126

Query: 61  ALVISQRHKA-DDNYGVAVSNLESAQIPKDDAYYLLSWKCKCRDKYFQP 104
           ALVISQR K  D+N G  VSN+E+AQ+PKDDAYYLLSWKCKC+DKYFQP
Sbjct: 127 ALVISQRLKGYDNNNGGVVSNMEAAQVPKDDAYYLLSWKCKCKDKYFQP 175

[Close]

BLAST of Sed0013123.1 vs. ExPASy TrEMBL
Match: A0A6J1JFP8 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111485317 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.1e-37
Identity = 84/105 (80.00%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 1   MALKNSLFLILPLIFCLSLSHPTSGDED-SKQKELVIGSRPPQCFSKCLNCRPCVAALVI 60
           MALK+SL LILPLIF LSLSHPTSG+ED S+QKELVIGSRPP+CF+KCLNCRPCVAALVI
Sbjct: 1   MALKSSLLLILPLIFSLSLSHPTSGNEDSSRQKELVIGSRPPRCFNKCLNCRPCVAALVI 60

Query: 61  SQRHKADDNYGVAVSNLESA-QIPKDDAYYLLSWKCKCRDKYFQP 104
           SQRHK   N   A SNLE+A   P+DDAYYLLSWKCKC+DKYFQP
Sbjct: 61  SQRHKGVHNN--AFSNLEAALPAPRDDAYYLLSWKCKCKDKYFQP 103

[Close]

BLAST of Sed0013123.1 vs. TAIR 10
Match: AT1G80133.1 (unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 2.5e-10
Identity = 33/99 (33.33%), Postives = 49/99 (49.49%), Query Frame = 0


Query: 6   SLFLILPLIFCLSLSHPTSGDEDSKQKELVIGSRPPQCFSKCLNCRPCVAALV-ISQRHK 65
           ++F  L  + C+S +H        + KE V+GS PP C +KC NC+PC+  L  I   H 
Sbjct: 20  NIFFSLLSLHCISGAH----GHQQRMKESVMGSEPPVCATKCRNCKPCLPYLFDIRGAHD 79

Query: 66  ADDNYGVAVSNLESAQIPKDDAYYLLSWKCKCRDKYFQP 104
            DD+                + YY + W C+CRD+ F+P
Sbjct: 80  DDDD---------------SEPYYPVKWICRCRDRVFEP 99

[Close]

BLAST of Sed0013123.1 vs. TAIR 10
Match: AT5G10310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13898.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 3.1e-05
Identity = 32/121 (26.45%), Postives = 52/121 (42.98%), Query Frame = 0


Query: 2   ALKNSLFLILPLIFCLSLSHPTSG------DEDSKQKELV-----IGSRPPQCFSKCLNC 61
           A+  S  L+LPLI  L ++   S          S Q  L+     +GS PP C ++C NC
Sbjct: 3   AIYKSTLLLLPLILILLITPQVSSFLQPIQPPISPQVALIEDKARLGSTPPSCHNRCNNC 62

Query: 62  RPCVAALV--------ISQRHKADDNYGVAVSNLESAQIPKDDAYYLLSWKCKCRDKYFQ 104
            PC+A  V         ++ +     +    S+L +  + +   Y  + WKC C   ++ 
Sbjct: 63  HPCMAIQVPTLPTRSRFTRVNPFSGGFVRPPSSLTTV-LDQYSNYKPMGWKCHCNGHFYN 122

The following BLAST results are available for this feature:

BLAST of Sed0013123.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933441.1	2.1e-43	83.65	EPIDERMAL PATTERNING FACTOR-like protein 8 isoform X2 [Cucurbita moschata] >KAG7...	[more]
XP_023531007.1	2.1e-43	83.65	EPIDERMAL PATTERNING FACTOR-like protein 1 isoform X2 [Cucurbita pepo subsp. pep...	[more]
XP_022933440.1	1.5e-41	79.82	EPIDERMAL PATTERNING FACTOR-like protein 8 isoform X1 [Cucurbita moschata] >KAG6...	[more]
XP_023531006.1	1.5e-41	79.82	EPIDERMAL PATTERNING FACTOR-like protein 1 isoform X1 [Cucurbita pepo subsp. pep...	[more]
XP_022971966.1	4.8e-40	79.81	EPIDERMAL PATTERNING FACTOR-like protein 1 isoform X2 [Cucurbita maxima]	[more]

BLAST of Sed0013123.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G3V9	3.5e-09	33.33	EPIDERMAL PATTERNING FACTOR-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q9LFT5	4.4e-04	26.45	EPIDERMAL PATTERNING FACTOR-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]

BLAST of Sed0013123.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZ19	1.0e-43	83.65	Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1F4W6	7.2e-42	79.82	Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1I4N2	2.3e-40	79.81	Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1I8G8	1.7e-38	76.15	Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1JFP8	1.1e-37	80.00	Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]

BLAST of Sed0013123.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80133.1	2.5e-10	33.33	unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 prot...	[more]
AT5G10310.1	3.1e-05	26.45	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 35..103 e-value: 5.0E-19 score: 68.0
None	No IPR available	PANTHER	PTHR33109:SF57	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN	coord: 6..103
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 6..103

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0013123	Sed0013123	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013123.1-exon	Sed0013123.1-exon-LG12:33642854..33643649	exon
Sed0013123.1-exon	Sed0013123.1-exon-LG12:33643748..33643858	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013123.1-three_prime_utr	Sed0013123.1-three_prime_utr-LG12:33642854..33643410	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013123.1-cds	Sed0013123.1-cds-LG12:33643411..33643649	CDS
Sed0013123.1-cds	Sed0013123.1-cds-LG12:33643748..33643820	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0013123.1-five_prime_utr	Sed0013123.1-five_prime_utr-LG12:33643821..33643858	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0013123.1	Sed0013123.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010374	stomatal complex development
biological_process	GO:0010052	guard cell differentiation
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane