Sed0012968.1 (mRNA) Chayote v1

Overview


Name	Sed0012968.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	photosynthetic NDH subunit of subcomplex B 4, chloroplastic
Location	LG12: 30610977 .. 30613110 (-)
Sequence length	801
RNA-Seq Expression	Sed0012968.1
Synteny	Sed0012968.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAAGGGTGGTTAGAAATGATTCCCTTATCCATTCCTTCTTTCTCCACACAGAATAAGATTCCAAAACAACAGTTCTTTCATCTATTCTTCTACAACAATGGCAAAGGCTATAACAGCCTTCAGCATTTTCAGTCCAACTCTGCATAGCTCTAATCTCCATCCTCACAAATCAACCCAATTCCCATTTTCAAAACTGGTATGATTATCATCTTTTTTCCTTGTTGTTTCAAAATTCCATCCATTTCAATGTGCTAGATTTTAGTATTTCATAACAATTCTTGCAGCTAGTTTCAAACTCTGGAGTTTTCACCCATCCACAACTGGTAAGTTGCTCTGATTCTGTACATCCAAACAAGTAAAATTGATTGGCAAATTCAATATAGAAAAGTTCATTGGGGTACATACGGTTCGGGTTGGGTTGGCGGGATTTTTGAATCAACCCAAATTTTCCAGTTAGTCAATCGCCAACTCCTTCAATCTTGTATATTAAAGCAACTCAATCCAATCCGACCTGTATTGAATCATATAATCTTCTTTTTTTTTTTCCTTGCTTAGACTCAACTCATAGCACATAAATATGTAGAAATAAAAATTAATGAAAAAATGCATGATATATTCAAACCTAAGTTATCTTATTAGTTTTTCCTTGCCAATATACTACTGATATATCTTATACATACACATATATAGTATTATTATGAGTTCAAGTTGAGTTGAGTCAACCGGAAAATCGATTCAACCCAACTAAAATTTCAAAATTATAACTCAACCCAAACCCAAAGAAAATTATAACGAAATACCTACGGTTTGGATTGTATGCTTTTGTGCAATGAATAGCCTGAGGGTAGCAACCAGCAAAGAGGGTCTGTGGGCAGAGTGAATGCTTTCCCAGATTGGCAATTGATGGCAGTTTTGGTTGATCATTTAGATGGCCAAAGAGACCTTGTTACTCATAAATCTATTGTACATCTTAGTGATGGAGCTATAAAGAATGTTTGTAAGTGTTTCTTTAAGCTCATTTTTGTGTTGTATATTGTACATGGAATGAGGATATGGGAAACTAATCTTTATTTTTAAATATTTGTTTGATGTCAGATAGTCTTTATATCATGTTCACTTGTTGGGGATGTTTGTTCTTTGGCTCCATGAAGGTATCATATCTCTTCACTAGCATTCTTTTAAGTTTTCAATATGAGAGGTTAAATGAGTGAAGGATAAAATGGTATGATTGTTAGGGCTTGAGAGATCTTCTCAAGAGTTCGAGAGAGTTAAATACCTCGAATCACGTGACTTATTGTGTACTTCAGTTATGATTTGTTCGTCAATAGATTTGGGTATGTACTCACGAATAAAAAAGTTTTGGGTTTAAATCTTCTAATTGTCGATTGTTGAACTAAAAAACAAATTCTATAGTTTCCAACCTGAACTCAGAATAGTAAGATAGGCTATTAGCATATTAATAGGAAACATGCGCTATCAAAATGAACTAAGAACAGATGAACACAACCGATAAACAAGCTAACAAAGAATATATGGATTGAGTTGAATTGCTACAATCCATGGATAAAAATAAGTTGGCAAATTGACCAACCCAGACGTAAATTTGCATTGGTCCAAAAAGACTAATCTAACTCAAGCCAACCCGGATCATGTCTATCCCTTTGTCTTCTAGGTTGAGACTACTAAACAAGATTATATTTTCAGGATCCTTTTTATGACTCAGAGGCATACAGGAAAGATGGAGGAGATGGAACAGGGCATTGGGTGTATGAGAAGGTGAAATAATAGTCTATTTCACCATGTCACTTATCTTAGCTTTGAATCAATTATTAGTATATTTGACCATGATATTGCAGCAAGAGGACATTGAAGAAGAAGCAAGAGCAGAGCTTTGGAGGGAGGAGCTGATTGAGGAGATTGAACAGAAGGTTGGAGGACTAAGAGAGCTAGAAGAAGCTGTCACAAAATAAGAGATTTTGGGCATCTTTTTATGTACTTAATTCAATATAGCACAATCATTATGTGTATATATTAAAAAGCCTTGGGATGTTAGGCTTGATTGAAAGTTCAACCACCTTCCTTCCATATGTTTTCCTTACTCCAATATCTAAATTTCACATACAAAAATTTAG

mRNA sequence

GAGAAGGGTGGTTAGAAATGATTCCCTTATCCATTCCTTCTTTCTCCACACAGAATAAGATTCCAAAACAACAGTTCTTTCATCTATTCTTCTACAACAATGGCAAAGGCTATAACAGCCTTCAGCATTTTCAGTCCAACTCTGCATAGCTCTAATCTCCATCCTCACAAATCAACCCAATTCCCATTTTCAAAACTGCTAGTTTCAAACTCTGGAGTTTTCACCCATCCACAACTGCCTGAGGGTAGCAACCAGCAAAGAGGGTCTGTGGGCAGAGTGAATGCTTTCCCAGATTGGCAATTGATGGCAGTTTTGGTTGATCATTTAGATGGCCAAAGAGACCTTGTTACTCATAAATCTATTGTACATCTTAGTGATGGAGCTATAAAGAATGTTTATAGTCTTTATATCATGTTCACTTGTTGGGGATGTTTGTTCTTTGGCTCCATGAAGGATCCTTTTTATGACTCAGAGGCATACAGGAAAGATGGAGGAGATGGAACAGGGCATTGGGTGTATGAGAAGCAAGAGGACATTGAAGAAGAAGCAAGAGCAGAGCTTTGGAGGGAGGAGCTGATTGAGGAGATTGAACAGAAGGTTGGAGGACTAAGAGAGCTAGAAGAAGCTGTCACAAAATAAGAGATTTTGGGCATCTTTTTATGTACTTAATTCAATATAGCACAATCATTATGTGTATATATTAAAAAGCCTTGGGATGTTAGGCTTGATTGAAAGTTCAACCACCTTCCTTCCATATGTTTTCCTTACTCCAATATCTAAATTTCACATACAAAAATTTAG

Coding sequence (CDS)

ATGGCAAAGGCTATAACAGCCTTCAGCATTTTCAGTCCAACTCTGCATAGCTCTAATCTCCATCCTCACAAATCAACCCAATTCCCATTTTCAAAACTGCTAGTTTCAAACTCTGGAGTTTTCACCCATCCACAACTGCCTGAGGGTAGCAACCAGCAAAGAGGGTCTGTGGGCAGAGTGAATGCTTTCCCAGATTGGCAATTGATGGCAGTTTTGGTTGATCATTTAGATGGCCAAAGAGACCTTGTTACTCATAAATCTATTGTACATCTTAGTGATGGAGCTATAAAGAATGTTTATAGTCTTTATATCATGTTCACTTGTTGGGGATGTTTGTTCTTTGGCTCCATGAAGGATCCTTTTTATGACTCAGAGGCATACAGGAAAGATGGAGGAGATGGAACAGGGCATTGGGTGTATGAGAAGCAAGAGGACATTGAAGAAGAAGCAAGAGCAGAGCTTTGGAGGGAGGAGCTGATTGAGGAGATTGAACAGAAGGTTGGAGGACTAAGAGAGCTAGAAGAAGCTGTCACAAAATAA

Protein sequence

MAKAITAFSIFSPTLHSSNLHPHKSTQFPFSKLLVSNSGVFTHPQLPEGSNQQRGSVGRVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDGAIKNVYSLYIMFTCWGCLFFGSMKDPFYDSEAYRKDGGDGTGHWVYEKQEDIEEEARAELWREELIEEIEQKVGGLRELEEAVTK

Homology

[Close]

BLAST of Sed0012968.1 vs. NCBI nr
Match: XP_022933404.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucurbita moschata] >XP_023531595.1 photosynthetic NDH subunit of subcomplex B 4, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo] >KAG6587547.1 Photosynthetic NDH subunit of subcomplex B 4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021522.1 Photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 305.1 bits (780), Expect = 4.1e-79
Identity = 155/180 (86.11%), Postives = 160/180 (88.89%), Query Frame = 0


Query: 1   MAKAITAFSIFSPTLH-SSNLHPHKSTQFPFSKLLVSNSGVFTHPQLPEGSNQQRGSVGR 60
           MAKAI  FSI   TL+ SSNLHPHKST  PFS LL  NSGVF+H QL EGS +QRGS+GR
Sbjct: 1   MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTLL-PNSGVFSHRQLTEGSKRQRGSLGR 60

Query: 61  VNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDGAIKNVYSLYIMFTCWGCLFFGSMKD 120
           VNAFPDW LMAVLVDHLDGQRDLVTHKSIVHLSD AIKNVYSLYIMFTCWGCLFFGSMKD
Sbjct: 61  VNAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120

Query: 121 PFYDSEAYRKDGGDGTGHWVYEKQEDIEEEARAELWREELIEEIEQKVGGLRELEEAVTK 180
           P+YDSE YRKDGGDGTGHWVYEKQEDIEE ARAELWREELIEEIEQKVGGLRELEEA  K
Sbjct: 121 PYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 179

[Close]

BLAST of Sed0012968.1 vs. NCBI nr
Match: XP_022921851.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita moschata] >KAG7023202.1 Photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 304.7 bits (779), Expect = 5.3e-79
Identity = 151/179 (84.36%), Postives = 161/179 (89.94%), Query Frame = 0


Query: 1   MAKAITAFSIFSPTLHSSNLHPHKSTQFPFSKLLVSNSGVFTHPQLPEGSNQQRGSVGRV 60
           MAKAI  FS+ +PTLHSSNLHPHKST  P  K L SNSG+F H QL E + +QRGS+G+V
Sbjct: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPK-LPSNSGIFGHQQLIEDTKRQRGSMGKV 60

Query: 61  NAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDGAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           +AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSD AIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 61  SAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120

Query: 121 FYDSEAYRKDGGDGTGHWVYEKQEDIEEEARAELWREELIEEIEQKVGGLRELEEAVTK 180
           +YDSE YRKDGGDGTGHWVYEKQEDIEEEARA+LWREELIEEIEQKVGGLRELEEA  K
Sbjct: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of Sed0012968.1 vs. NCBI nr
Match: XP_023516363.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 303.5 bits (776), Expect = 1.2e-78
Identity = 150/179 (83.80%), Postives = 160/179 (89.39%), Query Frame = 0


Query: 1   MAKAITAFSIFSPTLHSSNLHPHKSTQFPFSKLLVSNSGVFTHPQLPEGSNQQRGSVGRV 60
           MAKAI  FS+ +PTLHSSNLHPHKST  P  K L SNSG+F H QL E + +QRGS+G+V
Sbjct: 1   MAKAIAGFSMINPTLHSSNLHPHKSTLIPHPK-LPSNSGIFGHQQLIEDTKRQRGSMGKV 60

Query: 61  NAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDGAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           +AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSD AIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 61  SAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120

Query: 121 FYDSEAYRKDGGDGTGHWVYEKQEDIEEEARAELWREELIEEIEQKVGGLRELEEAVTK 180
           +YDSE YRKDGGDGTGHWVYEKQEDIEE ARA+LWREELIEEIEQKVGGLRELEEA  K
Sbjct: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of Sed0012968.1 vs. NCBI nr
Match: XP_023531594.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 302.8 bits (774), Expect = 2.0e-78
Identity = 151/180 (83.89%), Postives = 158/180 (87.78%), Query Frame = 0


Query: 1   MAKAITAFSIFSPTLH-SSNLHPHKSTQFPFSKLLVSNSGVFTHPQLPEGSNQQRGSVGR 60
           MAKAI  FSI   TL+ SSNLHPHKST  P   + + NSGVF+H QL EGS +QRGS+GR
Sbjct: 1   MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPLQFMQLPNSGVFSHRQLTEGSKRQRGSLGR 60

Query: 61  VNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDGAIKNVYSLYIMFTCWGCLFFGSMKD 120
           VNAFPDW LMAVLVDHLDGQRDLVTHKSIVHLSD AIKNVYSLYIMFTCWGCLFFGSMKD
Sbjct: 61  VNAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120

Query: 121 PFYDSEAYRKDGGDGTGHWVYEKQEDIEEEARAELWREELIEEIEQKVGGLRELEEAVTK 180
           P+YDSE YRKDGGDGTGHWVYEKQEDIEE ARAELWREELIEEIEQKVGGLRELEEA  K
Sbjct: 121 PYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 180

[Close]

BLAST of Sed0012968.1 vs. NCBI nr
Match: XP_022987205.1 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 301.6 bits (771), Expect = 4.5e-78
Identity = 149/179 (83.24%), Postives = 160/179 (89.39%), Query Frame = 0


Query: 1   MAKAITAFSIFSPTLHSSNLHPHKSTQFPFSKLLVSNSGVFTHPQLPEGSNQQRGSVGRV 60
           MAKAI  FS+ +PTLHSSNLHPHK+T  P  K L SNSG+F H QL E + +QRGS+G+V
Sbjct: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPK-LPSNSGIFGHQQLIEDTKRQRGSMGKV 60

Query: 61  NAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDGAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           +AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSD AIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 61  SAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120

Query: 121 FYDSEAYRKDGGDGTGHWVYEKQEDIEEEARAELWREELIEEIEQKVGGLRELEEAVTK 180
           +YDSE YRKDGGDGTGHWVYEKQEDIEE ARA+LWREELIEEIEQKVGGLRELEEA  K
Sbjct: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of Sed0012968.1 vs. ExPASy Swiss-Prot
Match: Q8RXS1 (Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB4 PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.2e-50
Identity = 110/182 (60.44%), Postives = 127/182 (69.78%), Query Frame = 0


Query: 1   MAKAITAFSIFSPTLHSSNLHPHKSTQFPFSKLLVSNSGVFTHPQLPE--GSNQQRGSVG 60
           MA+A T+F+  +  + SS  H  K    P       N G +    + E    N  RGS+ 
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGP-------NHGYWLSKNVNEKRERNLMRGSLC 60

Query: 61  RVNAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDGAIKNVYSLYIMFTCWGCLFFGSM 120
              A P D  LMAV+V  ++G RD++T K + HLSD AIKNVY  YIMFTCWGCL+FGS 
Sbjct: 61  VRKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSA 120

Query: 121 KDPFYDSEAYRKDGGDGTGHWVYEKQEDIEEEARAELWREELIEEIEQKVGGLRELEEAV 180
           KDPFYDSE YR DGGDGTG+WVYE QEDIEE+ARAELWREELIEEIEQKVGGLRELEEAV
Sbjct: 121 KDPFYDSEEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAV 175

[Close]

BLAST of Sed0012968.1 vs. ExPASy TrEMBL
Match: A0A6J1EZP2 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111440832 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 2.0e-79
Identity = 155/180 (86.11%), Postives = 160/180 (88.89%), Query Frame = 0


Query: 1   MAKAITAFSIFSPTLH-SSNLHPHKSTQFPFSKLLVSNSGVFTHPQLPEGSNQQRGSVGR 60
           MAKAI  FSI   TL+ SSNLHPHKST  PFS LL  NSGVF+H QL EGS +QRGS+GR
Sbjct: 1   MAKAIAGFSIIKQTLYSSSNLHPHKSTHIPFSTLL-PNSGVFSHRQLTEGSKRQRGSLGR 60

Query: 61  VNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDGAIKNVYSLYIMFTCWGCLFFGSMKD 120
           VNAFPDW LMAVLVDHLDGQRDLVTHKSIVHLSD AIKNVYSLYIMFTCWGCLFFGSMKD
Sbjct: 61  VNAFPDWPLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKD 120

Query: 121 PFYDSEAYRKDGGDGTGHWVYEKQEDIEEEARAELWREELIEEIEQKVGGLRELEEAVTK 180
           P+YDSE YRKDGGDGTGHWVYEKQEDIEE ARAELWREELIEEIEQKVGGLRELEEA  K
Sbjct: 121 PYYDSEVYRKDGGDGTGHWVYEKQEDIEEAARAELWREELIEEIEQKVGGLRELEEAGKK 179

[Close]

BLAST of Sed0012968.1 vs. ExPASy TrEMBL
Match: A0A6J1E2I6 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111429992 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.6e-79
Identity = 151/179 (84.36%), Postives = 161/179 (89.94%), Query Frame = 0


Query: 1   MAKAITAFSIFSPTLHSSNLHPHKSTQFPFSKLLVSNSGVFTHPQLPEGSNQQRGSVGRV 60
           MAKAI  FS+ +PTLHSSNLHPHKST  P  K L SNSG+F H QL E + +QRGS+G+V
Sbjct: 1   MAKAIAGFSMVNPTLHSSNLHPHKSTLIPQPK-LPSNSGIFGHQQLIEDTKRQRGSMGKV 60

Query: 61  NAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDGAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           +AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSD AIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 61  SAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120

Query: 121 FYDSEAYRKDGGDGTGHWVYEKQEDIEEEARAELWREELIEEIEQKVGGLRELEEAVTK 180
           +YDSE YRKDGGDGTGHWVYEKQEDIEEEARA+LWREELIEEIEQKVGGLRELEEA  K
Sbjct: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEEARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of Sed0012968.1 vs. ExPASy TrEMBL
Match: A0A6J1JG67 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111484826 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 2.2e-78
Identity = 149/179 (83.24%), Postives = 160/179 (89.39%), Query Frame = 0


Query: 1   MAKAITAFSIFSPTLHSSNLHPHKSTQFPFSKLLVSNSGVFTHPQLPEGSNQQRGSVGRV 60
           MAKAI  FS+ +PTLHSSNLHPHK+T  P  K L SNSG+F H QL E + +QRGS+G+V
Sbjct: 1   MAKAIAGFSMINPTLHSSNLHPHKATLIPQPK-LPSNSGIFGHQQLIEDTKRQRGSMGKV 60

Query: 61  NAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDGAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           +AFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSD AIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 61  SAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120

Query: 121 FYDSEAYRKDGGDGTGHWVYEKQEDIEEEARAELWREELIEEIEQKVGGLRELEEAVTK 180
           +YDSE YRKDGGDGTGHWVYEKQEDIEE ARA+LWREELIEEIEQKVGGLRELEEA  K
Sbjct: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGRK 178

[Close]

BLAST of Sed0012968.1 vs. ExPASy TrEMBL
Match: A0A6J1BYE8 (photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006874 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 7.0e-77
Identity = 148/182 (81.32%), Postives = 160/182 (87.91%), Query Frame = 0


Query: 1   MAKAITAFSIFSPTLHSSNLHPHKSTQFPFSKLLVSNSGVFTHPQLPEGS---NQQRGSV 60
           MAKAI  FSI  P L++SNLH HKST  P+SKLL  NSGVF+HPQL E +    ++RGS+
Sbjct: 12  MAKAIAGFSIIKPHLNTSNLHQHKSTIIPYSKLLF-NSGVFSHPQLHESTTTKKRERGSL 71

Query: 61  GRVNAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDGAIKNVYSLYIMFTCWGCLFFGSM 120
           G+VNAFPDWQLMAVLVDH+DGQRDL+THKSIVHLSD AIKNVYSLYIMFTCWGCLFFGSM
Sbjct: 72  GKVNAFPDWQLMAVLVDHMDGQRDLITHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSM 131

Query: 121 KDPFYDSEAYRKDGGDGTGHWVYEKQEDIEEEARAELWREELIEEIEQKVGGLRELEEAV 180
           KDP+YDSE YRKDGGDGTGHWVYE QEDIEE ARAELWREELIEEIEQKVGGLRELEEA 
Sbjct: 132 KDPYYDSEVYRKDGGDGTGHWVYETQEDIEEAARAELWREELIEEIEQKVGGLRELEEAG 191

[Close]

BLAST of Sed0012968.1 vs. ExPASy TrEMBL
Match: A0A5A7UWT7 (Photosynthetic NDH subunit of subcomplex B 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002540 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.6e-76
Identity = 149/179 (83.24%), Postives = 158/179 (88.27%), Query Frame = 0


Query: 1   MAKAITAFSIFSPTLHSSNLHPHKSTQFPFSKLLVSNSGVFTHPQLPEGSNQQRGSVGRV 60
           MAKAI  FSI  PTLHSSNLHP KS   P SKLL SNSG F+H +LP+ +  +RGS+ +V
Sbjct: 1   MAKAIAGFSIIKPTLHSSNLHP-KSALIPHSKLL-SNSGGFSHQELPKVAKPKRGSLSKV 60

Query: 61  NAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDGAIKNVYSLYIMFTCWGCLFFGSMKDP 120
           NAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSD AIKNVYSLYIMFTCWGCLFFGSMKDP
Sbjct: 61  NAFPDWQLMAVLVDHLDGQRDLVTHKSIVHLSDEAIKNVYSLYIMFTCWGCLFFGSMKDP 120

Query: 121 FYDSEAYRKDGGDGTGHWVYEKQEDIEEEARAELWREELIEEIEQKVGGLRELEEAVTK 180
           +YDSE YRKDGGDGTGHWVYEKQEDIEE ARA+LWREELIEEIEQKVGGLRELEEA  K
Sbjct: 121 YYDSEVYRKDGGDGTGHWVYEKQEDIEEAARADLWREELIEEIEQKVGGLRELEEAGKK 177

[Close]

BLAST of Sed0012968.1 vs. TAIR 10
Match: AT1G18730.1 (NDH dependent flow 6 )

HSP 1 Score: 199.5 bits (506), Expect = 2.3e-51
Identity = 110/182 (60.44%), Postives = 127/182 (69.78%), Query Frame = 0


Query: 1   MAKAITAFSIFSPTLHSSNLHPHKSTQFPFSKLLVSNSGVFTHPQLPE--GSNQQRGSVG 60
           MA+A T+F+  +  + SS  H  K    P       N G +    + E    N  RGS+ 
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGP-------NHGYWLSKNVNEKRERNLMRGSLC 60

Query: 61  RVNAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDGAIKNVYSLYIMFTCWGCLFFGSM 120
              A P D  LMAV+V  ++G RD++T K + HLSD AIKNVY  YIMFTCWGCL+FGS 
Sbjct: 61  VRKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSA 120

Query: 121 KDPFYDSEAYRKDGGDGTGHWVYEKQEDIEEEARAELWREELIEEIEQKVGGLRELEEAV 180
           KDPFYDSE YR DGGDGTG+WVYE QEDIEE+ARAELWREELIEEIEQKVGGLRELEEAV
Sbjct: 121 KDPFYDSEEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAV 175

[Close]

BLAST of Sed0012968.1 vs. TAIR 10
Match: AT1G18730.3 (NDH dependent flow 6 )

HSP 1 Score: 199.1 bits (505), Expect = 2.9e-51
Identity = 109/180 (60.56%), Postives = 125/180 (69.44%), Query Frame = 0


Query: 1   MAKAITAFSIFSPTLHSSNLHPHKSTQFPFSKLLVSNSGVFTHPQLPEGSNQQRGSVGRV 60
           MA+A T+F+  +  + SS  H  K    P     +SN             N  RGS+   
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGPNHGYWLSNVNE------KRERNLMRGSLCVR 60

Query: 61  NAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDGAIKNVYSLYIMFTCWGCLFFGSMKD 120
            A P D  LMAV+V  ++G RD++T K + HLSD AIKNVY  YIMFTCWGCL+FGS KD
Sbjct: 61  KALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKD 120

Query: 121 PFYDSEAYRKDGGDGTGHWVYEKQEDIEEEARAELWREELIEEIEQKVGGLRELEEAVTK 180
           PFYDSE YR DGGDGTG+WVYE QEDIEE+ARAELWREELIEEIEQKVGGLRELEEAVTK
Sbjct: 121 PFYDSEEYRGDGGDGTGYWVYETQEDIEEKARAELWREELIEEIEQKVGGLRELEEAVTK 174

[Close]

BLAST of Sed0012968.1 vs. TAIR 10
Match: AT1G18730.2 (NDH dependent flow 6 )

HSP 1 Score: 136.7 bits (343), Expect = 1.8e-32
Identity = 73/142 (51.41%), Postives = 88/142 (61.97%), Query Frame = 0


Query: 1   MAKAITAFSIFSPTLHSSNLHPHKSTQFPFSKLLVSNSGVFTHPQLPEGSNQQRGSVGRV 60
           MA+A T+F+  +  + SS  H  K    P     +SN             N  RGS+   
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGPNHGYWLSNVNE------KRERNLMRGSLCVR 60

Query: 61  NAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDGAIKNVYSLYIMFTCWGCLFFGSMKD 120
            A P D  LMAV+V  ++G RD++T K + HLSD AIKNVY  YIMFTCWGCL+FGS KD
Sbjct: 61  KALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKD 120

Query: 121 PFYDSEAYRKDGGDGTGHWVYE 142
           PFYDSE YR DGGDGTG+WVYE
Sbjct: 121 PFYDSEEYRGDGGDGTGYWVYE 136

[Close]

BLAST of Sed0012968.1 vs. TAIR 10
Match: AT1G18730.4 (NDH dependent flow 6 )

HSP 1 Score: 136.7 bits (343), Expect = 1.8e-32
Identity = 73/142 (51.41%), Postives = 88/142 (61.97%), Query Frame = 0


Query: 1   MAKAITAFSIFSPTLHSSNLHPHKSTQFPFSKLLVSNSGVFTHPQLPEGSNQQRGSVGRV 60
           MA+A T+F+  +  + SS  H  K    P     +SN             N  RGS+   
Sbjct: 1   MAEAFTSFTFTNLHIPSSYNHSPKQNSGPNHGYWLSNVNE------KRERNLMRGSLCVR 60

Query: 61  NAFP-DWQLMAVLVDHLDGQRDLVTHKSIVHLSDGAIKNVYSLYIMFTCWGCLFFGSMKD 120
            A P D  LMAV+V  ++G RD++T K + HLSD AIKNVY  YIMFTCWGCL+FGS KD
Sbjct: 61  KALPHDLPLMAVMVQQIEGMRDIITEKHVWHLSDKAIKNVYMFYIMFTCWGCLYFGSAKD 120

Query: 121 PFYDSEAYRKDGGDGTGHWVYE 142
           PFYDSE YR DGGDGTG+WVYE
Sbjct: 121 PFYDSEEYRGDGGDGTGYWVYE 136

The following BLAST results are available for this feature:

BLAST of Sed0012968.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022933404.1	4.1e-79	86.11	photosynthetic NDH subunit of subcomplex B 4, chloroplastic [Cucurbita moschata]...	[more]
XP_022921851.1	5.3e-79	84.36	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita mosc...	[more]
XP_023516363.1	1.2e-78	83.80	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita pepo...	[more]
XP_023531594.1	2.0e-78	83.89	photosynthetic NDH subunit of subcomplex B 4, chloroplastic isoform X1 [Cucurbit...	[more]
XP_022987205.1	4.5e-78	83.24	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Cucurbita maxi...	[more]

BLAST of Sed0012968.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RXS1	3.2e-50	60.44	Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of Sed0012968.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZP2	2.0e-79	86.11	photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Cucurbita moschat...	[more]
A0A6J1E2I6	2.6e-79	84.36	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita mo...	[more]
A0A6J1JG67	2.2e-78	83.24	photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like OS=Cucurbita ma...	[more]
A0A6J1BYE8	7.0e-77	81.32	photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Momordica charant...	[more]
A0A5A7UWT7	1.6e-76	83.24	Photosynthetic NDH subunit of subcomplex B 4 OS=Cucumis melo var. makuwa OX=1194...	[more]

BLAST of Sed0012968.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18730.1	2.3e-51	60.44	NDH dependent flow 6	[more]
AT1G18730.3	2.9e-51	60.56	NDH dependent flow 6	[more]
AT1G18730.2	1.8e-32	51.41	NDH dependent flow 6	[more]
AT1G18730.4	1.8e-32	51.41	NDH dependent flow 6	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 156..176
IPR034570	Photosynthetic NDH subunit of subcomplex B 4, chloroplastic	PANTHER	PTHR36315	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 4, CHLOROPLASTIC	coord: 1..179

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0012968	Sed0012968	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0012968.1-exon	Sed0012968.1-exon-LG12:30610977..30611252	exon
Sed0012968.1-exon	Sed0012968.1-exon-LG12:30611333..30611404	exon
Sed0012968.1-exon	Sed0012968.1-exon-LG12:30611958..30612013	exon
Sed0012968.1-exon	Sed0012968.1-exon-LG12:30612112..30612271	exon
Sed0012968.1-exon	Sed0012968.1-exon-LG12:30612786..30612824	exon
Sed0012968.1-exon	Sed0012968.1-exon-LG12:30612913..30613110	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0012968.1-three_prime_utr	Sed0012968.1-three_prime_utr-LG12:30610977..30611138	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0012968.1-cds	Sed0012968.1-cds-LG12:30611139..30611252	CDS
Sed0012968.1-cds	Sed0012968.1-cds-LG12:30611333..30611404	CDS
Sed0012968.1-cds	Sed0012968.1-cds-LG12:30611958..30612013	CDS
Sed0012968.1-cds	Sed0012968.1-cds-LG12:30612112..30612271	CDS
Sed0012968.1-cds	Sed0012968.1-cds-LG12:30612786..30612824	CDS
Sed0012968.1-cds	Sed0012968.1-cds-LG12:30612913..30613011	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0012968.1-five_prime_utr	Sed0012968.1-five_prime_utr-LG12:30613012..30613110	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0012968.1	Sed0012968.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component	GO:0016021	integral component of membrane