Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGATGATGCCGTATTGTGGCACTATGAGAAAACTGGAGTGTTTACGGTTAAGTCAGCTCATTGGCTTGGTATCGAACTAAGGGGGGAGCCTACTTCATCACATAAAGACATGTCAAAAGCTTGGTGGAACTACGTTTGGAATGCAACAGTCCCTAGTAAGGTAAAAAAAATTATCTGGTGTTTATATAACAATTTTGTTCCTGTGCAGATCAATTTAAATAAAAGAGGAATGATTTGTGATGTGCTTTGCAAGAGATTCCACTCTCATGTGGAAACAAGTTTCCATGCGATCTGGGATTGTAGATGTGTTAAAAATTATTGGAAGGAGTCTCCTTTCTTTCATGTTGGACCGCCAAACGTTACGATGGAAGTGGCAGATTTGCTACTTTGGTTTATTAAGAAGTTGAATTCTTTGCAAATGGAGGAGTTTTTGATGATGTGTTGGCGGATATGGAATGGAAGAAATTTGGTCGTGCTTAATAAAGTGGAGGAACCTTATAGGCTTTTCGATCTTAGGTATCAAAATGTTTGGGATTATTGTTCACTATATGTTGAAGAGTTTAGAGGTGCTAATCAATCTATTCAATCTGAGTTGATTACACAGAACTAG
mRNA sequence
ATGGGAGATGATGCCGTATTGTGGCACTATGAGAAAACTGGAGTGTTTACGGTTAAGTCAGCTCATTGGCTTGGTATCGAACTAAGGGGGGAGCCTACTTCATCACATAAAGACATGTCAAAAGCTTGGTGGAACTACGTTTGGAATGCAACAGTCCCTAGTAAGATCAATTTAAATAAAAGAGGAATGATTTGTGATGTGCTTTGCAAGAGATTCCACTCTCATGTGGAAACAAGTTTCCATGCGATCTGGGATTGTAGATGTGTTAAAAATTATTGGAAGGAGTCTCCTTTCTTTCATGTTGGACCGCCAAACGTTACGATGGAAGTGGCAGATTTGCTACTTTGGTTTATTAAGAAGTTGAATTCTTTGCAAATGGAGGAGTTTTTGATGATGTGTTGGCGGATATGGAATGGAAGAAATTTGGTCGTGCTTAATAAAGTGGAGGAACCTTATAGGCTTTTCGATCTTAGGTATCAAAATGTTTGGGATTATTGTTCACTATATGTTGAAGAGTTTAGAGGTGCTAATCAATCTATTCAATCTGAGTTGATTACACAGAACTAG
Coding sequence (CDS)
ATGGGAGATGATGCCGTATTGTGGCACTATGAGAAAACTGGAGTGTTTACGGTTAAGTCAGCTCATTGGCTTGGTATCGAACTAAGGGGGGAGCCTACTTCATCACATAAAGACATGTCAAAAGCTTGGTGGAACTACGTTTGGAATGCAACAGTCCCTAGTAAGATCAATTTAAATAAAAGAGGAATGATTTGTGATGTGCTTTGCAAGAGATTCCACTCTCATGTGGAAACAAGTTTCCATGCGATCTGGGATTGTAGATGTGTTAAAAATTATTGGAAGGAGTCTCCTTTCTTTCATGTTGGACCGCCAAACGTTACGATGGAAGTGGCAGATTTGCTACTTTGGTTTATTAAGAAGTTGAATTCTTTGCAAATGGAGGAGTTTTTGATGATGTGTTGGCGGATATGGAATGGAAGAAATTTGGTCGTGCTTAATAAAGTGGAGGAACCTTATAGGCTTTTCGATCTTAGGTATCAAAATGTTTGGGATTATTGTTCACTATATGTTGAAGAGTTTAGAGGTGCTAATCAATCTATTCAATCTGAGTTGATTACACAGAACTAG
Protein sequence
MGDDAVLWHYEKTGVFTVKSAHWLGIELRGEPTSSHKDMSKAWWNYVWNATVPSKINLNKRGMICDVLCKRFHSHVETSFHAIWDCRCVKNYWKESPFFHVGPPNVTMEVADLLLWFIKKLNSLQMEEFLMMCWRIWNGRNLVVLNKVEEPYRLFDLRYQNVWDYCSLYVEEFRGANQSIQSELITQN
Homology
BLAST of Sed0012963.1 vs. NCBI nr
Match:
XP_030497545.1 (uncharacterized protein LOC115713201 [Cannabis sativa])
HSP 1 Score: 99.4 bits (246), Expect = 3.6e-17
Identity = 56/179 (31.28%), Postives = 83/179 (46.37%), Query Frame = 0
Query: 4 DAVLWHYEKTGVFTVKSAHWLGIELRGEPTSSHKDMSKAWWNYVWNATVPSKIN------ 63
D ++W +G+FTVKSA+ L + R P+SS D K +W+ +W+++VPSK+
Sbjct: 806 DDLIWSRNSSGIFTVKSAYHLAVTSRDIPSSSSFDQCKRFWSKIWSSSVPSKVKHLVWRV 865
Query: 64 ----------LNKRGMICDVLCKRFHSHVETSFHAIWDCRCVKNYWKESPFFHVGPPNVT 123
L R +I +C HS ET H C VK WK SP FH N
Sbjct: 866 LSNSVPVASLLFFRHIIPSPICPLCHSEWETVEHVFLGCVNVKKAWKHSPLFHFYSNNKG 925
Query: 124 MEVADLLLWFIKKLNSLQMEEFLMMCWRIWNGRNLVVLN-KVEEPYRLFDLRYQNVWDY 166
+ + D + I L+ F W +WN RN + N K+ P+ L+D + +Y
Sbjct: 926 LSIYDFIALAIDILDKSDCAIFFCFIWLLWNHRNNLYHNKKLLPPWHLYDQAVSYLLEY 984
BLAST of Sed0012963.1 vs. NCBI nr
Match:
GAY58380.1 (hypothetical protein CUMW_186600 [Citrus unshiu])
HSP 1 Score: 97.4 bits (241), Expect = 1.4e-16
Identity = 47/177 (26.55%), Postives = 87/177 (49.15%), Query Frame = 0
Query: 4 DAVLWHYEKTGVFTVKSAHWLGIELRGEPTSSHKDMSKAWWNYVWNATVPSKI------- 63
D LWHY+K+ ++VKS++ + ++++ S ++ WN +W +P K+
Sbjct: 13 DQPLWHYDKSSNYSVKSSYQVALKIKFPNCPSSSSSTQTSWNAIWTLGIPEKVKIFMWRT 72
Query: 64 ---------NLNKRGMICDVLCKRFHSHVETSFHAIWDCRCVKNYWKESPFFHVGPPNVT 123
N +R ++ D LCKR ET++H +++CR + WK +P +
Sbjct: 73 VKNLLPTVDNHWRRKIVQDPLCKRCGRTSETTYHVLFECRASQKTWKLTPVRETIRGLIH 132
Query: 124 MEVADLLLWFIKKLNSLQMEEFLMMCWRIWNGRNLVVLNKVEEPYRLFDLRYQNVWD 165
+ D+L + N+ ++E + +CW IW+ RNL V + E +RL R + + D
Sbjct: 133 QNMMDILYELKRSNNTNELEMIVTVCWAIWHSRNLFVFERKRENFRLSVARSKAILD 189
BLAST of Sed0012963.1 vs. NCBI nr
Match:
KAF4359788.1 (hypothetical protein F8388_008350 [Cannabis sativa] >KAF4383970.1 hypothetical protein G4B88_016403 [Cannabis sativa])
HSP 1 Score: 97.1 bits (240), Expect = 1.8e-16
Identity = 54/200 (27.00%), Postives = 95/200 (47.50%), Query Frame = 0
Query: 3 DDAVLWHYEKTGVFTVKSAHWLGIELRGEPTSSHKDMSKAWWNYVW-------------- 62
+D ++WHY K G ++V + + L +L E + S WWN +W
Sbjct: 50 EDKIMWHYSKNGEYSVSNGYRLASDLLEEESQSDNSRLSGWWNGLWKKKIPPKVKHFVWK 109
Query: 63 --NATVPSKINLNKRGMICDVLCKR-FHSHVETSFHAIWDCRCVKNYWKESPFFHVGPPN 122
++ +P+K++L RGM D C R + E FHA+W CRC + WK+S +
Sbjct: 110 ICHSWIPTKVSLAHRGMAIDKTCFRCSEGYEEDVFHALWGCRCTYDIWKQSGLWEQMKRQ 169
Query: 123 VTMEVADLLLWFIKKLNSL----QMEEFLMMCWRIWNGRNLVVLNKVEEPYRLFDLRYQN 182
T V + F++ LN + + FL++ W +W+ RN VL+ P R +
Sbjct: 170 RTSNV----IAFLEGLNEVWTFNVFDYFLLLSWHLWSIRN-SVLHGGSAP------RASD 229
BLAST of Sed0012963.1 vs. NCBI nr
Match:
KAF4347301.1 (hypothetical protein G4B88_018350 [Cannabis sativa] >KAF4381919.1 hypothetical protein F8388_000613 [Cannabis sativa])
HSP 1 Score: 96.7 bits (239), Expect = 2.3e-16
Identity = 48/170 (28.24%), Postives = 84/170 (49.41%), Query Frame = 0
Query: 2 GDDAVLWHYEKTGVFTVKSAHWLGIELRGEPTSSHKDMSKAWWNYVWNAT---------- 61
G+D ++W+ G +TV S++ + + +S+K ++K WW VW++
Sbjct: 378 GEDELIWNPTIDGEYTVASSYRMKQSEKEGAETSNKSITKGWWTAVWHSNLTPKIKNFIW 437
Query: 62 ------VPSKINLNKRGMICDVLCKRFHSHVETSFHAIWDCRCVKNYWKESPFFHVGPPN 121
VPSK L KRG+ D C + +ET HAIW C +K WKE+ +H+ P +
Sbjct: 438 RVCHNWVPSKTELAKRGIKLDRTCTGCWNQIETISHAIWQCPRLKYVWKETGLWHLFPKS 497
Query: 122 VTM--EVADLLLWFIKKLNSLQMEEFLMMCWRIWNGRNLVVLNKVEEPYR 154
+ + ++ + L++ K ++ E FL M W +W+ RN + P +
Sbjct: 498 LGLMSDLMEFLMFMKNKCSNQDFERFLGMSWMVWSQRNNQIFQNKNPPLK 547
BLAST of Sed0012963.1 vs. NCBI nr
Match:
XP_030506074.1 (uncharacterized protein LOC115720986 [Cannabis sativa])
HSP 1 Score: 96.3 bits (238), Expect = 3.0e-16
Identity = 48/170 (28.24%), Postives = 83/170 (48.82%), Query Frame = 0
Query: 2 GDDAVLWHYEKTGVFTVKSAHWLGIELRGEPTSSHKDMSKAWWNYVWNAT---------- 61
G+D ++W+ G +TV S + + + +S+K ++K WW VW++
Sbjct: 19 GEDELIWNPTIDGEYTVASCYRMKQSEKEGAETSNKSITKGWWTAVWHSNLTPKIKNFIW 78
Query: 62 ------VPSKINLNKRGMICDVLCKRFHSHVETSFHAIWDCRCVKNYWKESPFFHVGPPN 121
VPSK L KRG+ D C + +ET HAIW C +K WKE+ +H+ P +
Sbjct: 79 RVCHNWVPSKTELAKRGIKLDRTCNGCWNQIETISHAIWQCPRLKYVWKETGLWHLFPKS 138
Query: 122 VTM--EVADLLLWFIKKLNSLQMEEFLMMCWRIWNGRNLVVLNKVEEPYR 154
+ + ++ + L++ K ++ E FL M W +W+ RN + P +
Sbjct: 139 LGLMSDLMEFLMFMKNKCSNQDFERFLGMSWMVWSQRNNRIFQNKNPPLK 188
BLAST of Sed0012963.1 vs. ExPASy TrEMBL
Match:
A0A803QQT2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 106.7 bits (265), Expect = 1.1e-19
Identity = 59/195 (30.26%), Postives = 94/195 (48.21%), Query Frame = 0
Query: 3 DDAVLWHYEKTGVFTVKSAHWLGIELRGEPTSSHKDMSKAWWNYVWNATVPSK------- 62
+D +LWHY K G ++VKS + + E S++ WW +W +P K
Sbjct: 345 EDKILWHYSKYGEYSVKSGYRMAASFTTEQHQSNEHSIVQWWKKLWRLKIPPKVKHFVWK 404
Query: 63 ---------INLNKRGMICDVLCKRFHSHVETSF-HAIWDCRCVKNYWKESPFFH----- 122
+NL KRG+ V+C R SHV+ S HA+W+C+ K YW+ S +
Sbjct: 405 VAHNWLPANVNLAKRGIASSVVCSRCSSHVDESVAHALWECKASKGYWRVSGLYDDLKQM 464
Query: 123 VGPPNVTMEVADLLLWFIKKLNSLQMEEFLMMCWRIWNGRNLVVLNKVEEPYRLFDLRYQ 176
+G N+TM + W +KL E FL++ W IWN RN VV + + + +
Sbjct: 465 LGEDNLTMLMRIAAEWDKEKL-----EFFLLVSWNIWNVRNTVV-------HGGYHPKPE 524
BLAST of Sed0012963.1 vs. ExPASy TrEMBL
Match:
A0A803Q1K6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 105.9 bits (263), Expect = 1.8e-19
Identity = 60/195 (30.77%), Postives = 93/195 (47.69%), Query Frame = 0
Query: 3 DDAVLWHYEKTGVFTVKSAHWLGIELRGEPTSSHKDMSKAWWNYVWNATVPSK------- 62
+D +LWHY K G ++VKS + + L E S++ WW +W P K
Sbjct: 1300 EDKILWHYSKNGEYSVKSGYRMAASLTTEQHQSNEHSIVQWWKKLWRLNFPPKVKHFVWK 1359
Query: 63 ---------INLNKRGMICDVLCKRFHSHVETSF-HAIWDCRCVKNYWKESPFFH----- 122
+NL KRG+ V+C R SHVE S HA+W+C+ K YW+ S +
Sbjct: 1360 VAHNWLPANVNLAKRGIASSVVCSRCSSHVEESVAHALWECKASKGYWRVSGLYDDLKLI 1419
Query: 123 VGPPNVTMEVADLLLWFIKKLNSLQMEEFLMMCWRIWNGRNLVVLNKVEEPYRLFDLRYQ 176
+G N++M + W +KL E FL++ W IWN RN VV + + + +
Sbjct: 1420 LGEDNLSMLMRIAAEWDKEKL-----EFFLLVSWNIWNVRNTVV-------HGGYHPKPE 1479
BLAST of Sed0012963.1 vs. ExPASy TrEMBL
Match:
A0A803NT49 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 105.5 bits (262), Expect = 2.4e-19
Identity = 52/171 (30.41%), Postives = 91/171 (53.22%), Query Frame = 0
Query: 2 GDDAVLWHYEKTGVFTVKSAH-WLGIELRGEPTSSHKDMSKAWWNYVWNAT--------- 61
G+D ++W+Y G +TV S + + IE +G TS K + + WW VW++
Sbjct: 390 GEDELIWNYTVDGEYTVASGYTMMQIEKKGAETSD-KSILRKWWKEVWHSNLTPKMKNFV 449
Query: 62 -------VPSKINLNKRGMICDVLCKRFHSHVETSFHAIWDCRCVKNYWKESPFFHVGPP 121
VPSK L K+G+ D++C S+VET HA+W C +++ WKE+ F+H+ P
Sbjct: 450 WRVCHSWVPSKSELVKKGIKMDIICSGCWSNVETISHALWHCPRLRSVWKEAGFWHLFPK 509
Query: 122 NVTM--EVADLLLWFIKKLNSLQMEEFLMMCWRIWNGRNLVVLNKVEEPYR 154
++ + ++ D L++ K + + E FL + W +W+ R+ + E P +
Sbjct: 510 SLGLMSDLMDFLMFMASKCSKQEFEMFLGLSWMVWSQRSKQIFQNKETPLK 559
BLAST of Sed0012963.1 vs. ExPASy TrEMBL
Match:
A0A803PCN1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 103.2 bits (256), Expect = 1.2e-18
Identity = 48/164 (29.27%), Postives = 83/164 (50.61%), Query Frame = 0
Query: 2 GDDAVLWHYEKTGVFTVKSAHWLGIELRGEPTSSHKDMSKAWWNYVWNAT---------- 61
G+D ++WH TG + V S + + + P SS+KDM + WW +WN+
Sbjct: 1882 GEDEIVWHDSTTGEYKVSSGYMINYVEKQGPESSNKDMVRNWWKGIWNSNLTPKMKNFIW 1941
Query: 62 ------VPSKINLNKRGMICDVLCKRFHSHVETSFHAIWDCRCVKNYWKESPFFHVGPPN 121
+P+K L KRG+ D C S ET HA+W C +K WKE+ F+H+ P +
Sbjct: 1942 RVCHNWIPTKTELVKRGIKIDQTCSDCWSKDETIGHALWTCSSLKVIWKETGFWHLFPTS 2001
Query: 122 VTM--EVADLLLWFIKKLNSLQMEEFLMMCWRIWNGRNLVVLNK 148
+ + ++ + L++ + + + + FL + W +W+ RN + K
Sbjct: 2002 LGLMKDLLEFLMFMANQCSKQKFDRFLGLSWLVWSQRNQRIFQK 2045
BLAST of Sed0012963.1 vs. ExPASy TrEMBL
Match:
A0A803QE56 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 98.6 bits (244), Expect = 3.0e-17
Identity = 54/195 (27.69%), Postives = 87/195 (44.62%), Query Frame = 0
Query: 3 DDAVLWHYEKTGVFTVKSAHWLGIELRGEPTSSHKDMSKAWWNYVWNATVPSKIN----- 62
+D ++WHY K G ++VKS + + +ELR E T S++ AWW +W +P K+
Sbjct: 1174 EDKIMWHYTKNGEYSVKSGYCMAMELRKEVTQSNEKDMMAWWRGMWKLKLPPKVKHFVWK 1233
Query: 63 -----------LNKRGMICDVLCKR-FHSHVETSFHAIWDCRCVKNYWKESPFFHVGPPN 122
L RGM D C R + E FHA+W C K+ WK H
Sbjct: 1234 MANSWLPTHSALTSRGMDVDPRCSRCSNGGRENIFHALWRCHANKDVWKRFGIQHQIKRQ 1293
Query: 123 VTMEVADLLLWFIKKLNSLQMEEFLMMCWRIWNGRNLVVLNKVEEPYRLFDLRYQNVWDY 181
+ +V + K E FL++ W++W RN ++ + V+++
Sbjct: 1294 GSEDVLAFFMRISKAWEKETFELFLVVSWQLWYIRNNTKHGGIQP-------KATEVFEW 1353
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_030497545.1 | 3.6e-17 | 31.28 | uncharacterized protein LOC115713201 [Cannabis sativa] | [more] |
GAY58380.1 | 1.4e-16 | 26.55 | hypothetical protein CUMW_186600 [Citrus unshiu] | [more] |
KAF4359788.1 | 1.8e-16 | 27.00 | hypothetical protein F8388_008350 [Cannabis sativa] >KAF4383970.1 hypothetical p... | [more] |
KAF4347301.1 | 2.3e-16 | 28.24 | hypothetical protein G4B88_018350 [Cannabis sativa] >KAF4381919.1 hypothetical p... | [more] |
XP_030506074.1 | 3.0e-16 | 28.24 | uncharacterized protein LOC115720986 [Cannabis sativa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A803QQT2 | 1.1e-19 | 30.26 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803Q1K6 | 1.8e-19 | 30.77 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803NT49 | 2.4e-19 | 30.41 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803PCN1 | 1.2e-18 | 29.27 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803QE56 | 3.0e-17 | 27.69 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |