Sed0012963.1 (mRNA) Chayote v1

Overview
NameSed0012963.1
TypemRNA
OrganismSechium edule (Chayote v1)
Descriptionzf-RVT domain-containing protein
LocationLG11: 19357530 .. 19358144 (+)
Sequence length567
RNA-Seq ExpressionSed0012963.1
SyntenySed0012963.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGATGATGCCGTATTGTGGCACTATGAGAAAACTGGAGTGTTTACGGTTAAGTCAGCTCATTGGCTTGGTATCGAACTAAGGGGGGAGCCTACTTCATCACATAAAGACATGTCAAAAGCTTGGTGGAACTACGTTTGGAATGCAACAGTCCCTAGTAAGGTAAAAAAAATTATCTGGTGTTTATATAACAATTTTGTTCCTGTGCAGATCAATTTAAATAAAAGAGGAATGATTTGTGATGTGCTTTGCAAGAGATTCCACTCTCATGTGGAAACAAGTTTCCATGCGATCTGGGATTGTAGATGTGTTAAAAATTATTGGAAGGAGTCTCCTTTCTTTCATGTTGGACCGCCAAACGTTACGATGGAAGTGGCAGATTTGCTACTTTGGTTTATTAAGAAGTTGAATTCTTTGCAAATGGAGGAGTTTTTGATGATGTGTTGGCGGATATGGAATGGAAGAAATTTGGTCGTGCTTAATAAAGTGGAGGAACCTTATAGGCTTTTCGATCTTAGGTATCAAAATGTTTGGGATTATTGTTCACTATATGTTGAAGAGTTTAGAGGTGCTAATCAATCTATTCAATCTGAGTTGATTACACAGAACTAG

mRNA sequence

ATGGGAGATGATGCCGTATTGTGGCACTATGAGAAAACTGGAGTGTTTACGGTTAAGTCAGCTCATTGGCTTGGTATCGAACTAAGGGGGGAGCCTACTTCATCACATAAAGACATGTCAAAAGCTTGGTGGAACTACGTTTGGAATGCAACAGTCCCTAGTAAGATCAATTTAAATAAAAGAGGAATGATTTGTGATGTGCTTTGCAAGAGATTCCACTCTCATGTGGAAACAAGTTTCCATGCGATCTGGGATTGTAGATGTGTTAAAAATTATTGGAAGGAGTCTCCTTTCTTTCATGTTGGACCGCCAAACGTTACGATGGAAGTGGCAGATTTGCTACTTTGGTTTATTAAGAAGTTGAATTCTTTGCAAATGGAGGAGTTTTTGATGATGTGTTGGCGGATATGGAATGGAAGAAATTTGGTCGTGCTTAATAAAGTGGAGGAACCTTATAGGCTTTTCGATCTTAGGTATCAAAATGTTTGGGATTATTGTTCACTATATGTTGAAGAGTTTAGAGGTGCTAATCAATCTATTCAATCTGAGTTGATTACACAGAACTAG

Coding sequence (CDS)

ATGGGAGATGATGCCGTATTGTGGCACTATGAGAAAACTGGAGTGTTTACGGTTAAGTCAGCTCATTGGCTTGGTATCGAACTAAGGGGGGAGCCTACTTCATCACATAAAGACATGTCAAAAGCTTGGTGGAACTACGTTTGGAATGCAACAGTCCCTAGTAAGATCAATTTAAATAAAAGAGGAATGATTTGTGATGTGCTTTGCAAGAGATTCCACTCTCATGTGGAAACAAGTTTCCATGCGATCTGGGATTGTAGATGTGTTAAAAATTATTGGAAGGAGTCTCCTTTCTTTCATGTTGGACCGCCAAACGTTACGATGGAAGTGGCAGATTTGCTACTTTGGTTTATTAAGAAGTTGAATTCTTTGCAAATGGAGGAGTTTTTGATGATGTGTTGGCGGATATGGAATGGAAGAAATTTGGTCGTGCTTAATAAAGTGGAGGAACCTTATAGGCTTTTCGATCTTAGGTATCAAAATGTTTGGGATTATTGTTCACTATATGTTGAAGAGTTTAGAGGTGCTAATCAATCTATTCAATCTGAGTTGATTACACAGAACTAG

Protein sequence

MGDDAVLWHYEKTGVFTVKSAHWLGIELRGEPTSSHKDMSKAWWNYVWNATVPSKINLNKRGMICDVLCKRFHSHVETSFHAIWDCRCVKNYWKESPFFHVGPPNVTMEVADLLLWFIKKLNSLQMEEFLMMCWRIWNGRNLVVLNKVEEPYRLFDLRYQNVWDYCSLYVEEFRGANQSIQSELITQN
Homology
BLAST of Sed0012963.1 vs. NCBI nr
Match: XP_030497545.1 (uncharacterized protein LOC115713201 [Cannabis sativa])

HSP 1 Score: 99.4 bits (246), Expect = 3.6e-17
Identity = 56/179 (31.28%), Postives = 83/179 (46.37%), Query Frame = 0

Query: 4   DAVLWHYEKTGVFTVKSAHWLGIELRGEPTSSHKDMSKAWWNYVWNATVPSKIN------ 63
           D ++W    +G+FTVKSA+ L +  R  P+SS  D  K +W+ +W+++VPSK+       
Sbjct: 806 DDLIWSRNSSGIFTVKSAYHLAVTSRDIPSSSSFDQCKRFWSKIWSSSVPSKVKHLVWRV 865

Query: 64  ----------LNKRGMICDVLCKRFHSHVETSFHAIWDCRCVKNYWKESPFFHVGPPNVT 123
                     L  R +I   +C   HS  ET  H    C  VK  WK SP FH    N  
Sbjct: 866 LSNSVPVASLLFFRHIIPSPICPLCHSEWETVEHVFLGCVNVKKAWKHSPLFHFYSNNKG 925

Query: 124 MEVADLLLWFIKKLNSLQMEEFLMMCWRIWNGRNLVVLN-KVEEPYRLFDLRYQNVWDY 166
           + + D +   I  L+      F    W +WN RN +  N K+  P+ L+D     + +Y
Sbjct: 926 LSIYDFIALAIDILDKSDCAIFFCFIWLLWNHRNNLYHNKKLLPPWHLYDQAVSYLLEY 984

BLAST of Sed0012963.1 vs. NCBI nr
Match: GAY58380.1 (hypothetical protein CUMW_186600 [Citrus unshiu])

HSP 1 Score: 97.4 bits (241), Expect = 1.4e-16
Identity = 47/177 (26.55%), Postives = 87/177 (49.15%), Query Frame = 0

Query: 4   DAVLWHYEKTGVFTVKSAHWLGIELRGEPTSSHKDMSKAWWNYVWNATVPSKI------- 63
           D  LWHY+K+  ++VKS++ + ++++     S    ++  WN +W   +P K+       
Sbjct: 13  DQPLWHYDKSSNYSVKSSYQVALKIKFPNCPSSSSSTQTSWNAIWTLGIPEKVKIFMWRT 72

Query: 64  ---------NLNKRGMICDVLCKRFHSHVETSFHAIWDCRCVKNYWKESPFFHVGPPNVT 123
                    N  +R ++ D LCKR     ET++H +++CR  +  WK +P        + 
Sbjct: 73  VKNLLPTVDNHWRRKIVQDPLCKRCGRTSETTYHVLFECRASQKTWKLTPVRETIRGLIH 132

Query: 124 MEVADLLLWFIKKLNSLQMEEFLMMCWRIWNGRNLVVLNKVEEPYRLFDLRYQNVWD 165
             + D+L    +  N+ ++E  + +CW IW+ RNL V  +  E +RL   R + + D
Sbjct: 133 QNMMDILYELKRSNNTNELEMIVTVCWAIWHSRNLFVFERKRENFRLSVARSKAILD 189

BLAST of Sed0012963.1 vs. NCBI nr
Match: KAF4359788.1 (hypothetical protein F8388_008350 [Cannabis sativa] >KAF4383970.1 hypothetical protein G4B88_016403 [Cannabis sativa])

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-16
Identity = 54/200 (27.00%), Postives = 95/200 (47.50%), Query Frame = 0

Query: 3   DDAVLWHYEKTGVFTVKSAHWLGIELRGEPTSSHKDMSKAWWNYVW-------------- 62
           +D ++WHY K G ++V + + L  +L  E + S       WWN +W              
Sbjct: 50  EDKIMWHYSKNGEYSVSNGYRLASDLLEEESQSDNSRLSGWWNGLWKKKIPPKVKHFVWK 109

Query: 63  --NATVPSKINLNKRGMICDVLCKR-FHSHVETSFHAIWDCRCVKNYWKESPFFHVGPPN 122
             ++ +P+K++L  RGM  D  C R    + E  FHA+W CRC  + WK+S  +      
Sbjct: 110 ICHSWIPTKVSLAHRGMAIDKTCFRCSEGYEEDVFHALWGCRCTYDIWKQSGLWEQMKRQ 169

Query: 123 VTMEVADLLLWFIKKLNSL----QMEEFLMMCWRIWNGRNLVVLNKVEEPYRLFDLRYQN 182
            T  V    + F++ LN +      + FL++ W +W+ RN  VL+    P      R  +
Sbjct: 170 RTSNV----IAFLEGLNEVWTFNVFDYFLLLSWHLWSIRN-SVLHGGSAP------RASD 229

BLAST of Sed0012963.1 vs. NCBI nr
Match: KAF4347301.1 (hypothetical protein G4B88_018350 [Cannabis sativa] >KAF4381919.1 hypothetical protein F8388_000613 [Cannabis sativa])

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-16
Identity = 48/170 (28.24%), Postives = 84/170 (49.41%), Query Frame = 0

Query: 2   GDDAVLWHYEKTGVFTVKSAHWLGIELRGEPTSSHKDMSKAWWNYVWNAT---------- 61
           G+D ++W+    G +TV S++ +    +    +S+K ++K WW  VW++           
Sbjct: 378 GEDELIWNPTIDGEYTVASSYRMKQSEKEGAETSNKSITKGWWTAVWHSNLTPKIKNFIW 437

Query: 62  ------VPSKINLNKRGMICDVLCKRFHSHVETSFHAIWDCRCVKNYWKESPFFHVGPPN 121
                 VPSK  L KRG+  D  C    + +ET  HAIW C  +K  WKE+  +H+ P +
Sbjct: 438 RVCHNWVPSKTELAKRGIKLDRTCTGCWNQIETISHAIWQCPRLKYVWKETGLWHLFPKS 497

Query: 122 VTM--EVADLLLWFIKKLNSLQMEEFLMMCWRIWNGRNLVVLNKVEEPYR 154
           + +  ++ + L++   K ++   E FL M W +W+ RN  +      P +
Sbjct: 498 LGLMSDLMEFLMFMKNKCSNQDFERFLGMSWMVWSQRNNQIFQNKNPPLK 547

BLAST of Sed0012963.1 vs. NCBI nr
Match: XP_030506074.1 (uncharacterized protein LOC115720986 [Cannabis sativa])

HSP 1 Score: 96.3 bits (238), Expect = 3.0e-16
Identity = 48/170 (28.24%), Postives = 83/170 (48.82%), Query Frame = 0

Query: 2   GDDAVLWHYEKTGVFTVKSAHWLGIELRGEPTSSHKDMSKAWWNYVWNAT---------- 61
           G+D ++W+    G +TV S + +    +    +S+K ++K WW  VW++           
Sbjct: 19  GEDELIWNPTIDGEYTVASCYRMKQSEKEGAETSNKSITKGWWTAVWHSNLTPKIKNFIW 78

Query: 62  ------VPSKINLNKRGMICDVLCKRFHSHVETSFHAIWDCRCVKNYWKESPFFHVGPPN 121
                 VPSK  L KRG+  D  C    + +ET  HAIW C  +K  WKE+  +H+ P +
Sbjct: 79  RVCHNWVPSKTELAKRGIKLDRTCNGCWNQIETISHAIWQCPRLKYVWKETGLWHLFPKS 138

Query: 122 VTM--EVADLLLWFIKKLNSLQMEEFLMMCWRIWNGRNLVVLNKVEEPYR 154
           + +  ++ + L++   K ++   E FL M W +W+ RN  +      P +
Sbjct: 139 LGLMSDLMEFLMFMKNKCSNQDFERFLGMSWMVWSQRNNRIFQNKNPPLK 188

BLAST of Sed0012963.1 vs. ExPASy TrEMBL
Match: A0A803QQT2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-19
Identity = 59/195 (30.26%), Postives = 94/195 (48.21%), Query Frame = 0

Query: 3   DDAVLWHYEKTGVFTVKSAHWLGIELRGEPTSSHKDMSKAWWNYVWNATVPSK------- 62
           +D +LWHY K G ++VKS + +      E   S++     WW  +W   +P K       
Sbjct: 345 EDKILWHYSKYGEYSVKSGYRMAASFTTEQHQSNEHSIVQWWKKLWRLKIPPKVKHFVWK 404

Query: 63  ---------INLNKRGMICDVLCKRFHSHVETSF-HAIWDCRCVKNYWKESPFFH----- 122
                    +NL KRG+   V+C R  SHV+ S  HA+W+C+  K YW+ S  +      
Sbjct: 405 VAHNWLPANVNLAKRGIASSVVCSRCSSHVDESVAHALWECKASKGYWRVSGLYDDLKQM 464

Query: 123 VGPPNVTMEVADLLLWFIKKLNSLQMEEFLMMCWRIWNGRNLVVLNKVEEPYRLFDLRYQ 176
           +G  N+TM +     W  +KL     E FL++ W IWN RN VV       +  +  + +
Sbjct: 465 LGEDNLTMLMRIAAEWDKEKL-----EFFLLVSWNIWNVRNTVV-------HGGYHPKPE 524

BLAST of Sed0012963.1 vs. ExPASy TrEMBL
Match: A0A803Q1K6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-19
Identity = 60/195 (30.77%), Postives = 93/195 (47.69%), Query Frame = 0

Query: 3    DDAVLWHYEKTGVFTVKSAHWLGIELRGEPTSSHKDMSKAWWNYVWNATVPSK------- 62
            +D +LWHY K G ++VKS + +   L  E   S++     WW  +W    P K       
Sbjct: 1300 EDKILWHYSKNGEYSVKSGYRMAASLTTEQHQSNEHSIVQWWKKLWRLNFPPKVKHFVWK 1359

Query: 63   ---------INLNKRGMICDVLCKRFHSHVETSF-HAIWDCRCVKNYWKESPFFH----- 122
                     +NL KRG+   V+C R  SHVE S  HA+W+C+  K YW+ S  +      
Sbjct: 1360 VAHNWLPANVNLAKRGIASSVVCSRCSSHVEESVAHALWECKASKGYWRVSGLYDDLKLI 1419

Query: 123  VGPPNVTMEVADLLLWFIKKLNSLQMEEFLMMCWRIWNGRNLVVLNKVEEPYRLFDLRYQ 176
            +G  N++M +     W  +KL     E FL++ W IWN RN VV       +  +  + +
Sbjct: 1420 LGEDNLSMLMRIAAEWDKEKL-----EFFLLVSWNIWNVRNTVV-------HGGYHPKPE 1479

BLAST of Sed0012963.1 vs. ExPASy TrEMBL
Match: A0A803NT49 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.4e-19
Identity = 52/171 (30.41%), Postives = 91/171 (53.22%), Query Frame = 0

Query: 2   GDDAVLWHYEKTGVFTVKSAH-WLGIELRGEPTSSHKDMSKAWWNYVWNAT--------- 61
           G+D ++W+Y   G +TV S +  + IE +G  TS  K + + WW  VW++          
Sbjct: 390 GEDELIWNYTVDGEYTVASGYTMMQIEKKGAETSD-KSILRKWWKEVWHSNLTPKMKNFV 449

Query: 62  -------VPSKINLNKRGMICDVLCKRFHSHVETSFHAIWDCRCVKNYWKESPFFHVGPP 121
                  VPSK  L K+G+  D++C    S+VET  HA+W C  +++ WKE+ F+H+ P 
Sbjct: 450 WRVCHSWVPSKSELVKKGIKMDIICSGCWSNVETISHALWHCPRLRSVWKEAGFWHLFPK 509

Query: 122 NVTM--EVADLLLWFIKKLNSLQMEEFLMMCWRIWNGRNLVVLNKVEEPYR 154
           ++ +  ++ D L++   K +  + E FL + W +W+ R+  +    E P +
Sbjct: 510 SLGLMSDLMDFLMFMASKCSKQEFEMFLGLSWMVWSQRSKQIFQNKETPLK 559

BLAST of Sed0012963.1 vs. ExPASy TrEMBL
Match: A0A803PCN1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-18
Identity = 48/164 (29.27%), Postives = 83/164 (50.61%), Query Frame = 0

Query: 2    GDDAVLWHYEKTGVFTVKSAHWLGIELRGEPTSSHKDMSKAWWNYVWNAT---------- 61
            G+D ++WH   TG + V S + +    +  P SS+KDM + WW  +WN+           
Sbjct: 1882 GEDEIVWHDSTTGEYKVSSGYMINYVEKQGPESSNKDMVRNWWKGIWNSNLTPKMKNFIW 1941

Query: 62   ------VPSKINLNKRGMICDVLCKRFHSHVETSFHAIWDCRCVKNYWKESPFFHVGPPN 121
                  +P+K  L KRG+  D  C    S  ET  HA+W C  +K  WKE+ F+H+ P +
Sbjct: 1942 RVCHNWIPTKTELVKRGIKIDQTCSDCWSKDETIGHALWTCSSLKVIWKETGFWHLFPTS 2001

Query: 122  VTM--EVADLLLWFIKKLNSLQMEEFLMMCWRIWNGRNLVVLNK 148
            + +  ++ + L++   + +  + + FL + W +W+ RN  +  K
Sbjct: 2002 LGLMKDLLEFLMFMANQCSKQKFDRFLGLSWLVWSQRNQRIFQK 2045

BLAST of Sed0012963.1 vs. ExPASy TrEMBL
Match: A0A803QE56 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.0e-17
Identity = 54/195 (27.69%), Postives = 87/195 (44.62%), Query Frame = 0

Query: 3    DDAVLWHYEKTGVFTVKSAHWLGIELRGEPTSSHKDMSKAWWNYVWNATVPSKIN----- 62
            +D ++WHY K G ++VKS + + +ELR E T S++    AWW  +W   +P K+      
Sbjct: 1174 EDKIMWHYTKNGEYSVKSGYCMAMELRKEVTQSNEKDMMAWWRGMWKLKLPPKVKHFVWK 1233

Query: 63   -----------LNKRGMICDVLCKR-FHSHVETSFHAIWDCRCVKNYWKESPFFHVGPPN 122
                       L  RGM  D  C R  +   E  FHA+W C   K+ WK     H     
Sbjct: 1234 MANSWLPTHSALTSRGMDVDPRCSRCSNGGRENIFHALWRCHANKDVWKRFGIQHQIKRQ 1293

Query: 123  VTMEVADLLLWFIKKLNSLQMEEFLMMCWRIWNGRNLVVLNKVEEPYRLFDLRYQNVWDY 181
             + +V    +   K       E FL++ W++W  RN      ++        +   V+++
Sbjct: 1294 GSEDVLAFFMRISKAWEKETFELFLVVSWQLWYIRNNTKHGGIQP-------KATEVFEW 1353

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030497545.13.6e-1731.28uncharacterized protein LOC115713201 [Cannabis sativa][more]
GAY58380.11.4e-1626.55hypothetical protein CUMW_186600 [Citrus unshiu][more]
KAF4359788.11.8e-1627.00hypothetical protein F8388_008350 [Cannabis sativa] >KAF4383970.1 hypothetical p... [more]
KAF4347301.12.3e-1628.24hypothetical protein G4B88_018350 [Cannabis sativa] >KAF4381919.1 hypothetical p... [more]
XP_030506074.13.0e-1628.24uncharacterized protein LOC115720986 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A803QQT21.1e-1930.26Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803Q1K61.8e-1930.77Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803NT492.4e-1930.41Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PCN11.2e-1829.27Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803QE563.0e-1727.69Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46736FAMILY NOT NAMEDcoord: 6..149

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Sed0012963Sed0012963gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0012963.1-exonSed0012963.1-exon-LG11:19357530..19357694exon
Sed0012963.1-exonSed0012963.1-exon-LG11:19357743..19358144exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Sed0012963.1-cdsSed0012963.1-cds-LG11:19357530..19357694CDS
Sed0012963.1-cdsSed0012963.1-cds-LG11:19357743..19358144CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Sed0012963.1Sed0012963.1-proteinpolypeptide