Sed0012647.1 (mRNA) Chayote v1

Overview


Name	Sed0012647.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	bHLH-MYC_N domain-containing protein
Location	LG03: 43282459 .. 43283915 (-)
Sequence length	732
RNA-Seq Expression	Sed0012647.1
Synteny	Sed0012647.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGGGAAGAACATCTAAGGCCATTAGATGTGACTCATCTTCTTCAACATACACTGAGAAGTGTACTCTCAATGGGTTTATGCAGTGTTTTGGAGGATACATATTAAAATCAATGACTTGCACTTTTCCACCGTAAGATCTTAACAACCAATTTCATAGCAGATGGGATGGTCAAGATGTTTAGAAGAAACTCTGATAGAATCTACCACACTATTTTATTAAACTACGTTAATTCTCTCGAGAGGATCTCTCAAAGAGCCAAAGTATAAAGACAACAATTCAATGGATGAATGACAATGACTTAACAACTCCTATTTATAACCCTAAATCCTAATTTAACCTAATTAATAAAAGACTAATAATAGGCCCAAGCTCAATACAGTTAAAATAGCAATTAACTAATAATTAATAAATACTAATATTCCCAAAACTCCAAGGCCGGATTGTATCATTTTCTTTATAAATATATATGAGCTAAAACTTTGGCACTTTTTACAAACATATTTATGCATTTATAAGAATATAAATACATGCAGCCTAACCATGAGAAATGGCTGCAGGTTACTAGTCTGGGAAGATGGTTTCTGCAATTTCGCCGCCTCATCATCAGCCTATATTGGCAATTGTGAGTTTCAGGGACTCCAACCAGAGCTCTCTTCTTTAAGATGTCTCATGAGATCTACAATTATGGAGAAGGGCAAGTAGCCGTAATTAAATTCAATACATGATAATGATATGATATACAGATTACAGGACTCACTTGTACTGATTCGGATTGCACGCCTCTTTATTGCAGCTTAATCGGAAAAGTCGCAGCCGATAATAGTCATAAGTGGATTTACAAGGAACCAAATGATCAAGAAATAAACTTGCTGTCTTCGTGCCTCTACTCTGCGGACACAGTACTAAGCATCTCTCTTGTTGCAAATGATTAATTTTTCCTCATTTGAATTATGTGGCTCATGCTCATGCAGAACTTGGGAAGCACAGTTTCAGTCCAGCATAAAGGTACAGCTGACCAAACTAAAACCAGATTAGTTTATCCATAGATCTAATTTCTCGTGCAGTTTGTGTCCTCTGCTGATCCACTATATTTGTCTTGCAGACCATAGCTCTTATAGCTGCTAGAGGAGTTGTTCAATTAGGAGCTACACACAAGGTGGTTGAAGACTTGAGCTCTGTGGTGTGTTTGAGAAAGAAATTCAACTGCATAGAAAGCATTTCAAGTGTGCTTTTTCCGCACCCGTGATCGAACTCTTTGAAAGTCGACAGCTTTGGCAGCTCAGATACATGGCAATTCCCTGGAGTAGCAAAAGCAAACCCACCTGAGTTGTACAACCACTTGACAATAGCTCCCTCTATGAGCAGCCTTGAAGCTCTCCTCTCAAAGCTACCTTCGGTGGTGCCACAATCGTCGCCTTCTCAGTTTTCGCCACTACCCCAAGGTGGCTAA

mRNA sequence

ATGGAAGGGGAAGAACATCTAAGGCCATTAGATGTGACTCATCTTCTTCAACATACACTGAGAAGTGTACTCTCAATGGATCTTAACAACCAATTTCATAGCAGATGGGATGGTCAAGATAATATAAATACATGCAGCCTAACCATGAGAAATGGCTGCAGGTTACTAGTCTGGGAAGATGGTTTCTGCAATTTCGCCGCCTCATCATCAGCCTATATTGGCAATTGTGAGTTTCAGGGACTCCAACCAGAGCTCTCTTCTTTAAGATGTCTCATGAGATCTACAATTATGGAGAAGGGCAACTTAATCGGAAAAGTCGCAGCCGATAATAGTCATAAGTGGATTTACAAGGAACCAAATGATCAAGAAATAAACTTGCTGTCTTCAACTTGGGAAGCACAGTTTCAGTCCAGCATAAAGACCATAGCTCTTATAGCTGCTAGAGGAGTTGTTCAATTAGGAGCTACACACAAGGTGGTTGAAGACTTGAGCTCTGTGGTGTGTTTGAGAAAGAAATTCAACTGCATAGAAAGCATTTCAAGTGTGCTTTTTCCGCACCCCTCAGATACATGGCAATTCCCTGGAGTAGCAAAAGCAAACCCACCTGAGTTGTACAACCACTTGACAATAGCTCCCTCTATGAGCAGCCTTGAAGCTCTCCTCTCAAAGCTACCTTCGGTGGTGCCACAATCGTCGCCTTCTCAGTTTTCGCCACTACCCCAAGGTGGCTAA

Coding sequence (CDS)

ATGGAAGGGGAAGAACATCTAAGGCCATTAGATGTGACTCATCTTCTTCAACATACACTGAGAAGTGTACTCTCAATGGATCTTAACAACCAATTTCATAGCAGATGGGATGGTCAAGATAATATAAATACATGCAGCCTAACCATGAGAAATGGCTGCAGGTTACTAGTCTGGGAAGATGGTTTCTGCAATTTCGCCGCCTCATCATCAGCCTATATTGGCAATTGTGAGTTTCAGGGACTCCAACCAGAGCTCTCTTCTTTAAGATGTCTCATGAGATCTACAATTATGGAGAAGGGCAACTTAATCGGAAAAGTCGCAGCCGATAATAGTCATAAGTGGATTTACAAGGAACCAAATGATCAAGAAATAAACTTGCTGTCTTCAACTTGGGAAGCACAGTTTCAGTCCAGCATAAAGACCATAGCTCTTATAGCTGCTAGAGGAGTTGTTCAATTAGGAGCTACACACAAGGTGGTTGAAGACTTGAGCTCTGTGGTGTGTTTGAGAAAGAAATTCAACTGCATAGAAAGCATTTCAAGTGTGCTTTTTCCGCACCCCTCAGATACATGGCAATTCCCTGGAGTAGCAAAAGCAAACCCACCTGAGTTGTACAACCACTTGACAATAGCTCCCTCTATGAGCAGCCTTGAAGCTCTCCTCTCAAAGCTACCTTCGGTGGTGCCACAATCGTCGCCTTCTCAGTTTTCGCCACTACCCCAAGGTGGCTAA

Protein sequence

MEGEEHLRPLDVTHLLQHTLRSVLSMDLNNQFHSRWDGQDNINTCSLTMRNGCRLLVWEDGFCNFAASSSAYIGNCEFQGLQPELSSLRCLMRSTIMEKGNLIGKVAADNSHKWIYKEPNDQEINLLSSTWEAQFQSSIKTIALIAARGVVQLGATHKVVEDLSSVVCLRKKFNCIESISSVLFPHPSDTWQFPGVAKANPPELYNHLTIAPSMSSLEALLSKLPSVVPQSSPSQFSPLPQGG

Homology

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BLAST of Sed0012647.1 vs. NCBI nr
Match: XP_022159131.1 (protein RICE SALT SENSITIVE 3 isoform X1 [Momordica charantia])

HSP 1 Score: 246.1 bits (627), Expect = 3.1e-61
Identity = 168/305 (55.08%), Postives = 178/305 (58.36%), Query Frame = 0


Query: 4   EEHLRPLDVTHLLQHTLRSVLSMDLNNQFH--------------SRWDGQDNINTCSLTM 63
           EEHL PL VTHLLQHTLRS+   + +   +              +RWDGQ   +      
Sbjct: 2   EEHLSPLAVTHLLQHTLRSLCIHENSRWVYAVFWRILPRNYPPPNRWDGQAAYDRSRGNR 61

Query: 64  RNGCRLLVWEDGFCNFAA---------------SSSAYIGNCEF---QGLQPELSSLRCL 123
           RN   +L WEDGFCNFAA               SSSAYIGNCEF   QGLQPEL      
Sbjct: 62  RNW--ILAWEDGFCNFAASSASELNSGGGDFPSSSSAYIGNCEFQRCQGLQPELF---FK 121

Query: 124 MRSTIMEKG-NLIGKVAADNSHKWIYKEPNDQEINLLSS------------TWEAQFQSS 183
           M   I   G  LIGKVAAD+SHKWI KEPNDQ IN L+S            TWEAQFQS 
Sbjct: 122 MSHEIYNYGEGLIGKVAADHSHKWIIKEPNDQTINFLTSSWHHSAADTQPRTWEAQFQSG 181

Query: 184 IKTIALIAAR-GVVQLGATHKVVEDLSSVVCLRKKFNCIESISSVLFPHP---------- 239
           IKTIALIA R GVVQLGA HKVVEDLS VV LRKKFN IESI  VL PHP          
Sbjct: 182 IKTIALIAVREGVVQLGAIHKVVEDLSYVVFLRKKFNYIESIPGVLLPHPSSSSSSSLYP 241

[Close]

BLAST of Sed0012647.1 vs. NCBI nr
Match: XP_022159132.1 (protein RICE SALT SENSITIVE 3 isoform X2 [Momordica charantia])

HSP 1 Score: 245.4 bits (625), Expect = 5.2e-61
Identity = 167/304 (54.93%), Postives = 178/304 (58.55%), Query Frame = 0


Query: 4   EEHLRPLDVTHLLQHTLRSVLSMDLNNQFHS-------------RWDGQDNINTCSLTMR 63
           EEHL PL VTHLLQHTLRS+   + +   ++             +WDGQ   +      R
Sbjct: 2   EEHLSPLAVTHLLQHTLRSLCIHENSRWVYAVFWRILPRNYPPPKWDGQAAYDRSRGNRR 61

Query: 64  NGCRLLVWEDGFCNFAA---------------SSSAYIGNCEF---QGLQPELSSLRCLM 123
           N   +L WEDGFCNFAA               SSSAYIGNCEF   QGLQPEL      M
Sbjct: 62  NW--ILAWEDGFCNFAASSASELNSGGGDFPSSSSAYIGNCEFQRCQGLQPELF---FKM 121

Query: 124 RSTIMEKG-NLIGKVAADNSHKWIYKEPNDQEINLLSS------------TWEAQFQSSI 183
              I   G  LIGKVAAD+SHKWI KEPNDQ IN L+S            TWEAQFQS I
Sbjct: 122 SHEIYNYGEGLIGKVAADHSHKWIIKEPNDQTINFLTSSWHHSAADTQPRTWEAQFQSGI 181

Query: 184 KTIALIAAR-GVVQLGATHKVVEDLSSVVCLRKKFNCIESISSVLFPHP----------- 239
           KTIALIA R GVVQLGA HKVVEDLS VV LRKKFN IESI  VL PHP           
Sbjct: 182 KTIALIAVREGVVQLGAIHKVVEDLSYVVFLRKKFNYIESIPGVLLPHPSSSSSSSLYPF 241

[Close]

BLAST of Sed0012647.1 vs. NCBI nr
Match: XP_011021653.1 (PREDICTED: transcription factor EMB1444-like [Populus euphratica] >XP_011021654.1 PREDICTED: transcription factor EMB1444-like [Populus euphratica])

HSP 1 Score: 237.3 bits (604), Expect = 1.4e-58
Identity = 159/291 (54.64%), Postives = 173/291 (59.45%), Query Frame = 0


Query: 4   EEHLRPLDVTHLLQHTLRSVLSMDLNNQF--------------HSRWDGQDNINTCSLTM 63
           EEHL PL VTHLLQHTLRS L +  N+Q+                +WDGQ   +      
Sbjct: 2   EEHLSPLAVTHLLQHTLRS-LCVHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR 61

Query: 64  RNGCRLLVWEDGFCNFAAS----------SSAYIGNCEF---QGLQPELSSLRCLMRSTI 123
           RN   +LVWEDGFCNFAAS          SS+  GNCEF   QGLQPEL      M   I
Sbjct: 62  RNW--ILVWEDGFCNFAASTADINSGDCPSSSVFGNCEFQHYQGLQPELF---FKMSHEI 121

Query: 124 MEKG-NLIGKVAADNSHKWIYKEPNDQEINLLSS----------TWEAQFQSSIKTIALI 183
              G  LIGKVAAD+SHKWIYKEPNDQEIN LS+          TWEAQFQS IKTIALI
Sbjct: 122 YNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNTADSQPRTWEAQFQSGIKTIALI 181

Query: 184 AAR-GVVQLGATHKVVEDLSSVVCLRKKFNCIESISSVLFPHP---------------SD 234
           A R GVVQLGA HKV+EDLS VV LRKKF+ IESI  VL PHP               SD
Sbjct: 182 AVREGVVQLGAVHKVIEDLSYVVLLRKKFSYIESIPGVLLPHPSSSANPYKVDGYGSVSD 241

[Close]

BLAST of Sed0012647.1 vs. NCBI nr
Match: XP_002314734.1 (protein RICE SALT SENSITIVE 3 [Populus trichocarpa] >PNT15645.1 hypothetical protein POPTR_010G096400 [Populus trichocarpa])

HSP 1 Score: 236.9 bits (603), Expect = 1.9e-58
Identity = 158/292 (54.11%), Postives = 174/292 (59.59%), Query Frame = 0


Query: 4   EEHLRPLDVTHLLQHTLRSVLSMDLNNQF--------------HSRWDGQDNINTCSLTM 63
           EEHL PL VTHLLQHTLRS L +  N+Q+                +WDGQ   +      
Sbjct: 2   EEHLSPLAVTHLLQHTLRS-LCVHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR 61

Query: 64  RNGCRLLVWEDGFCNFAAS----------SSAYIGNCEF---QGLQPELSSLRCLMRSTI 123
           RN   +LVWEDGFCNFAAS          SS+  GNCEF   QGLQPEL      M   I
Sbjct: 62  RNW--ILVWEDGFCNFAASTAEINSGDCPSSSVYGNCEFQHYQGLQPELF---FKMSHEI 121

Query: 124 MEKG-NLIGKVAADNSHKWIYKEPNDQEINLLSS----------TWEAQFQSSIKTIALI 183
              G  LIGKVAAD+SHKWIYKEPNDQEIN LS+          TWEAQFQS IKTIALI
Sbjct: 122 YNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNTADSQPRTWEAQFQSGIKTIALI 181

Query: 184 AAR-GVVQLGATHKVVEDLSSVVCLRKKFNCIESISSVLFPHP---------------SD 235
           A R GVVQLGA HKV+EDLS VV LRKKF+ IESI  VL PHP               SD
Sbjct: 182 AVREGVVQLGAVHKVIEDLSYVVLLRKKFSYIESIPGVLLPHPSSSAYPYKVDGYGTVSD 241

[Close]

BLAST of Sed0012647.1 vs. NCBI nr
Match: OMO78151.1 (hypothetical protein CCACVL1_14613 [Corchorus capsularis])

HSP 1 Score: 235.0 bits (598), Expect = 7.0e-58
Identity = 154/283 (54.42%), Postives = 172/283 (60.78%), Query Frame = 0


Query: 4   EEHLRPLDVTHLLQHTLRSVLSMDLNNQF--------------HSRWDGQDNINTCSLTM 63
           EEHL PL VTHLLQHTLRS L +  N+Q+                +WDGQ   +      
Sbjct: 2   EEHLSPLAVTHLLQHTLRS-LCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR 61

Query: 64  RNGCRLLVWEDGFCNFAASS----------SAYIGNCEF---QGLQPELSSLRCLMRSTI 123
           RN   +LVWEDGFCNFAAS+          S+  G+CEF   QGLQPEL      M   I
Sbjct: 62  RNW--ILVWEDGFCNFAASAAEINSGDCPGSSVYGSCEFQHYQGLQPELF---FKMSHEI 121

Query: 124 MEKG-NLIGKVAADNSHKWIYKEPNDQEINLLSS----------TWEAQFQSSIKTIALI 183
              G  LIGKVAAD+SHKWIYKEPN+QEIN LS+          TWEAQFQ+ IKTIALI
Sbjct: 122 YNYGEGLIGKVAADHSHKWIYKEPNEQEINFLSAWHNSADSHPRTWEAQFQAGIKTIALI 181

Query: 184 AAR-GVVQLGATHKVVEDLSSVVCLRKKFNCIESISSVLFPHPS--------------DT 230
           A R GVVQLGA HKV+EDLS VV LRKKF+ IESI  VL PHPS              + 
Sbjct: 182 AVREGVVQLGAVHKVIEDLSYVVLLRKKFSYIESIPGVLLPHPSSSAYPYKVDGYGAPEA 241

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BLAST of Sed0012647.1 vs. ExPASy Swiss-Prot
Match: K4PW38 (Protein RICE SALT SENSITIVE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RSS3 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-13
Identity = 70/226 (30.97%), Postives = 97/226 (42.92%), Query Frame = 0


Query: 43  NTCSLTMRNGCRLLVWEDGFCNFAASSSAYIGNC--EFQGLQPELSSLRCLMRSTIMEKG 102
           N C +   NG  +L+WEDGFC         +  C  +  G  P   +   +         
Sbjct: 62  NGCKVGDDNGSLMLMWEDGFCR------PRVAECLEDIDGEDPVRKAFSKMSIQLYNYGE 121

Query: 103 NLIGKVAADNSHKWIYKEPNDQEINL----------LSSTWEAQFQSSIKTIALI-AARG 162
            L+GKVA+D  HKW++KEP++ E N+          L   W  QF S I+TIA+I A  G
Sbjct: 122 GLMGKVASDKCHKWVFKEPSECEPNIANYWQSSFDALPPEWTDQFASGIQTIAVIQAGHG 181

Query: 163 VVQLGATHKVVEDLSSVVCLRKKFNCIESIS----SVLFPHPSDTWQFPG-----VAKAN 222
           ++QLG+   + EDL  V+ +R  F  +   S    S LF     T   P        +  
Sbjct: 182 LLQLGSCKIIPEDLHFVLRMRHMFESLGYQSGFFLSQLFSSSRGTSPSPSSFPLKQQQPP 241

Query: 223 PPELYNHLTIAPSM--SSLEALLSKLPSVV-PQSSPSQFSPLPQGG 244
           PP+L+N    AP         L    P+   P S P    P P GG
Sbjct: 242 PPQLFNWPGHAPPQLPPGASPLFPPGPAAFHPSSRP--MPPFPGGG 279

[Close]

BLAST of Sed0012647.1 vs. ExPASy Swiss-Prot
Match: Q58G01 (Transcription factor bHLH155 OS=Arabidopsis thaliana OX=3702 GN=BHLH155 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.2e-04
Identity = 28/76 (36.84%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 102 LIGKVAADNSHKWIYKE--PNDQEINLLSSTWEAQFQSSIKTIALIAAR--GVVQLGATH 161
           ++G+VA    H+W++ E   N        + WE+Q  + IKTI ++A    GVVQLG+  
Sbjct: 74  IVGQVAVSGEHQWVFPENYNNCNSAFEFHNVWESQISAGIKTILVVAVGPCGVVQLGSLC 133

Query: 162 KVVEDLSSVVCLRKKF 174
           KV ED++ V  +R  F
Sbjct: 134 KVNEDVNFVNHIRHLF 149

[Close]

BLAST of Sed0012647.1 vs. ExPASy TrEMBL
Match: A0A6J1E2Z9 (protein RICE SALT SENSITIVE 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111025561 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 1.5e-61
Identity = 168/305 (55.08%), Postives = 178/305 (58.36%), Query Frame = 0


Query: 4   EEHLRPLDVTHLLQHTLRSVLSMDLNNQFH--------------SRWDGQDNINTCSLTM 63
           EEHL PL VTHLLQHTLRS+   + +   +              +RWDGQ   +      
Sbjct: 2   EEHLSPLAVTHLLQHTLRSLCIHENSRWVYAVFWRILPRNYPPPNRWDGQAAYDRSRGNR 61

Query: 64  RNGCRLLVWEDGFCNFAA---------------SSSAYIGNCEF---QGLQPELSSLRCL 123
           RN   +L WEDGFCNFAA               SSSAYIGNCEF   QGLQPEL      
Sbjct: 62  RNW--ILAWEDGFCNFAASSASELNSGGGDFPSSSSAYIGNCEFQRCQGLQPELF---FK 121

Query: 124 MRSTIMEKG-NLIGKVAADNSHKWIYKEPNDQEINLLSS------------TWEAQFQSS 183
           M   I   G  LIGKVAAD+SHKWI KEPNDQ IN L+S            TWEAQFQS 
Sbjct: 122 MSHEIYNYGEGLIGKVAADHSHKWIIKEPNDQTINFLTSSWHHSAADTQPRTWEAQFQSG 181

Query: 184 IKTIALIAAR-GVVQLGATHKVVEDLSSVVCLRKKFNCIESISSVLFPHP---------- 239
           IKTIALIA R GVVQLGA HKVVEDLS VV LRKKFN IESI  VL PHP          
Sbjct: 182 IKTIALIAVREGVVQLGAIHKVVEDLSYVVFLRKKFNYIESIPGVLLPHPSSSSSSSLYP 241

[Close]

BLAST of Sed0012647.1 vs. ExPASy TrEMBL
Match: A0A6J1DYZ3 (protein RICE SALT SENSITIVE 3 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111025561 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 2.5e-61
Identity = 167/304 (54.93%), Postives = 178/304 (58.55%), Query Frame = 0


Query: 4   EEHLRPLDVTHLLQHTLRSVLSMDLNNQFHS-------------RWDGQDNINTCSLTMR 63
           EEHL PL VTHLLQHTLRS+   + +   ++             +WDGQ   +      R
Sbjct: 2   EEHLSPLAVTHLLQHTLRSLCIHENSRWVYAVFWRILPRNYPPPKWDGQAAYDRSRGNRR 61

Query: 64  NGCRLLVWEDGFCNFAA---------------SSSAYIGNCEF---QGLQPELSSLRCLM 123
           N   +L WEDGFCNFAA               SSSAYIGNCEF   QGLQPEL      M
Sbjct: 62  NW--ILAWEDGFCNFAASSASELNSGGGDFPSSSSAYIGNCEFQRCQGLQPELF---FKM 121

Query: 124 RSTIMEKG-NLIGKVAADNSHKWIYKEPNDQEINLLSS------------TWEAQFQSSI 183
              I   G  LIGKVAAD+SHKWI KEPNDQ IN L+S            TWEAQFQS I
Sbjct: 122 SHEIYNYGEGLIGKVAADHSHKWIIKEPNDQTINFLTSSWHHSAADTQPRTWEAQFQSGI 181

Query: 184 KTIALIAAR-GVVQLGATHKVVEDLSSVVCLRKKFNCIESISSVLFPHP----------- 239
           KTIALIA R GVVQLGA HKVVEDLS VV LRKKFN IESI  VL PHP           
Sbjct: 182 KTIALIAVREGVVQLGAIHKVVEDLSYVVFLRKKFNYIESIPGVLLPHPSSSSSSSLYPF 241

[Close]

BLAST of Sed0012647.1 vs. ExPASy TrEMBL
Match: A0A6M2FAV5 (bHLH-MYC_N domain-containing protein OS=Populus davidiana OX=266767 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 5.3e-59
Identity = 159/292 (54.45%), Postives = 175/292 (59.93%), Query Frame = 0


Query: 4   EEHLRPLDVTHLLQHTLRSVLSMDLNNQF--------------HSRWDGQDNINTCSLTM 63
           +EHL PL VTHLLQHTLRS L +  N+Q+                +WDGQ   +      
Sbjct: 2   DEHLSPLAVTHLLQHTLRS-LCVHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR 61

Query: 64  RNGCRLLVWEDGFCNFAAS----------SSAYIGNCEF---QGLQPELSSLRCLMRSTI 123
           RN   +LVWEDGFCNFAAS          SS+  GNCEF   QGLQPEL      M   I
Sbjct: 62  RNW--ILVWEDGFCNFAASTAEINSGDCPSSSVYGNCEFQHYQGLQPELF---FKMSHEI 121

Query: 124 MEKG-NLIGKVAADNSHKWIYKEPNDQEINLLSS----------TWEAQFQSSIKTIALI 183
              G  LIGKVAAD+SHKWIYKEPNDQEIN LS+          TWEAQFQS IKTIALI
Sbjct: 122 YNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNTADSQPRTWEAQFQSGIKTIALI 181

Query: 184 AAR-GVVQLGATHKVVEDLSSVVCLRKKFNCIESISSVLFPHP---------------SD 235
           A R GVVQLGA HKVVEDLS VV LRKKF+ IESI  VL PHP               SD
Sbjct: 182 AVREGVVQLGAVHKVVEDLSYVVLLRKKFSYIESIPGVLLPHPSSSAHPYKVDGYGTASD 241

[Close]

BLAST of Sed0012647.1 vs. ExPASy TrEMBL
Match: B9HVC9 (bHLH-MYC_N domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G096400 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 9.0e-59
Identity = 158/292 (54.11%), Postives = 174/292 (59.59%), Query Frame = 0


Query: 4   EEHLRPLDVTHLLQHTLRSVLSMDLNNQF--------------HSRWDGQDNINTCSLTM 63
           EEHL PL VTHLLQHTLRS L +  N+Q+                +WDGQ   +      
Sbjct: 2   EEHLSPLAVTHLLQHTLRS-LCVHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR 61

Query: 64  RNGCRLLVWEDGFCNFAAS----------SSAYIGNCEF---QGLQPELSSLRCLMRSTI 123
           RN   +LVWEDGFCNFAAS          SS+  GNCEF   QGLQPEL      M   I
Sbjct: 62  RNW--ILVWEDGFCNFAASTAEINSGDCPSSSVYGNCEFQHYQGLQPELF---FKMSHEI 121

Query: 124 MEKG-NLIGKVAADNSHKWIYKEPNDQEINLLSS----------TWEAQFQSSIKTIALI 183
              G  LIGKVAAD+SHKWIYKEPNDQEIN LS+          TWEAQFQS IKTIALI
Sbjct: 122 YNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNTADSQPRTWEAQFQSGIKTIALI 181

Query: 184 AAR-GVVQLGATHKVVEDLSSVVCLRKKFNCIESISSVLFPHP---------------SD 235
           A R GVVQLGA HKV+EDLS VV LRKKF+ IESI  VL PHP               SD
Sbjct: 182 AVREGVVQLGAVHKVIEDLSYVVLLRKKFSYIESIPGVLLPHPSSSAYPYKVDGYGTVSD 241

[Close]

BLAST of Sed0012647.1 vs. ExPASy TrEMBL
Match: A0A1R3I6L5 (bHLH-MYC_N domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_14613 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 3.4e-58
Identity = 154/283 (54.42%), Postives = 172/283 (60.78%), Query Frame = 0


Query: 4   EEHLRPLDVTHLLQHTLRSVLSMDLNNQF--------------HSRWDGQDNINTCSLTM 63
           EEHL PL VTHLLQHTLRS L +  N+Q+                +WDGQ   +      
Sbjct: 2   EEHLSPLAVTHLLQHTLRS-LCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR 61

Query: 64  RNGCRLLVWEDGFCNFAASS----------SAYIGNCEF---QGLQPELSSLRCLMRSTI 123
           RN   +LVWEDGFCNFAAS+          S+  G+CEF   QGLQPEL      M   I
Sbjct: 62  RNW--ILVWEDGFCNFAASAAEINSGDCPGSSVYGSCEFQHYQGLQPELF---FKMSHEI 121

Query: 124 MEKG-NLIGKVAADNSHKWIYKEPNDQEINLLSS----------TWEAQFQSSIKTIALI 183
              G  LIGKVAAD+SHKWIYKEPN+QEIN LS+          TWEAQFQ+ IKTIALI
Sbjct: 122 YNYGEGLIGKVAADHSHKWIYKEPNEQEINFLSAWHNSADSHPRTWEAQFQAGIKTIALI 181

Query: 184 AAR-GVVQLGATHKVVEDLSSVVCLRKKFNCIESISSVLFPHPS--------------DT 230
           A R GVVQLGA HKV+EDLS VV LRKKF+ IESI  VL PHPS              + 
Sbjct: 182 AVREGVVQLGAVHKVIEDLSYVVLLRKKFSYIESIPGVLLPHPSSSAYPYKVDGYGAPEA 241

[Close]

BLAST of Sed0012647.1 vs. TAIR 10
Match: AT1G60060.1 (Serine/threonine-protein kinase WNK (With No Lysine)-related )

HSP 1 Score: 218.0 bits (554), Expect = 8.3e-57
Identity = 155/320 (48.44%), Postives = 173/320 (54.06%), Query Frame = 0


Query: 4   EEHLRPLDVTHLLQHTLRSVLSMDLNNQF--------------HSRWDGQDNINTCSLTM 63
           EEHL PL VTHLLQHTLRS L +  N+Q+                +WDGQ   +      
Sbjct: 2   EEHLNPLAVTHLLQHTLRS-LCIHENSQWVYAVFWRILPRNYPPPKWDGQGAYDRSRGNR 61

Query: 64  RNGCRLLVWEDGFCNFAASS--------------SAYIGNCEF---QGLQPELSSLRCLM 123
           RN   +LVWEDGFCNFAAS+              SA  GN +F   QGLQPEL      M
Sbjct: 62  RNW--ILVWEDGFCNFAASAAEMSSGEGSGGGGGSAAYGNSDFQQYQGLQPELF---FKM 121

Query: 124 RSTIMEKG-NLIGKVAADNSHKWIYKEPNDQEINLLSS----------TWEAQFQSSIKT 183
              I   G  LIGKVAAD+SHKWIYKEPNDQEIN LS+          TWEAQFQS IKT
Sbjct: 122 SHEIYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNSADSYPRTWEAQFQSGIKT 181

Query: 184 IALIAAR-GVVQLGATHKVVEDLSSVVCLRKKFNCIESISSVLFPH------------PS 239
           IALI+ R GVVQLGA HKV+EDLS VV LRKK + IESI  VL PH            PS
Sbjct: 182 IALISVREGVVQLGAVHKVIEDLSYVVMLRKKLSYIESIPGVLLPHPSSSGYPFINASPS 241

[Close]

BLAST of Sed0012647.1 vs. TAIR 10
Match: AT3G15240.2 (Serine/threonine-protein kinase WNK (With No Lysine)-related )

HSP 1 Score: 82.0 bits (201), Expect = 7.1e-16
Identity = 50/145 (34.48%), Postives = 72/145 (49.66%), Query Frame = 0


Query: 43  NTCSLTMRNGCRLLVWEDGFCNFAASSSAYIGNCEFQGLQPELSSLRCLMRSTIMEKGNL 102
           N C +   NG  +L+WEDG+C     +    G+ E  G  P   S   +          L
Sbjct: 66  NGCKVGDDNGSLMLMWEDGYCRGRGGTEGCYGDME--GEDPVRKSFSKMSIQLYNYGEGL 125

Query: 103 IGKVAADNSHKWIYKEPNDQEINLLS----------STWEAQFQSSIKTIALI-AARGVV 162
           +GKVA+D  HKW++KE  + E N  S          S W  QF+S I+TIA+I A  G++
Sbjct: 126 MGKVASDKCHKWVFKEQTESESNASSYWQSSFDAIPSEWNDQFESGIRTIAVIQAGHGLL 185

Query: 163 QLGATHKVVEDLSSVVCLRKKFNCI 177
           QLG+   + EDL  V+ +R  F  +
Sbjct: 186 QLGSCKIIPEDLHFVLRMRHTFESL 208

[Close]

BLAST of Sed0012647.1 vs. TAIR 10
Match: AT5G53900.2 (Serine/threonine-protein kinase WNK (With No Lysine)-related )

HSP 1 Score: 82.0 bits (201), Expect = 7.1e-16
Identity = 52/147 (35.37%), Postives = 78/147 (53.06%), Query Frame = 0


Query: 43  NTCSLTMRNGCRLLVWEDGFCNFAASSSAYIGNCEFQGLQPEL-SSLRCLMRSTIMEKG- 102
           N C +   +G  +L+WEDGFC    S    +   + +G + +L       M   +   G 
Sbjct: 52  NGCKIGDESGSLMLMWEDGFCGGGRSEDLCL-ETDIEGHEEDLVRKAFSKMSIQLYNYGE 111

Query: 103 NLIGKVAADNSHKWIYKEPNDQEINL----------LSSTWEAQFQSSIKTIALI-AARG 162
            L+GKVA+D  HKW++KEP++ E NL          L   W  QF+S I+TIA+I A  G
Sbjct: 112 GLMGKVASDKCHKWVFKEPSESEPNLANYWQSSFDALPPEWTDQFESGIQTIAVIQAGHG 171

Query: 163 VVQLGATHKVVEDLSSVVCLRKKFNCI 177
           ++QLG+   + EDL  V+ +R+ F  I
Sbjct: 172 LLQLGSCKIIPEDLHFVLRMRQMFESI 197

[Close]

BLAST of Sed0012647.1 vs. TAIR 10
Match: AT5G53900.1 (Serine/threonine-protein kinase WNK (With No Lysine)-related )

HSP 1 Score: 65.1 bits (157), Expect = 9.0e-11
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 0


Query: 103 IGKVAADNSHKWIYKEPNDQEINL----------LSSTWEAQFQSSIKTIALI-AARGVV 162
           +GKVA+D  HKW++KEP++ E NL          L   W  QF+S I+TIA+I A  G++
Sbjct: 1   MGKVASDKCHKWVFKEPSESEPNLANYWQSSFDALPPEWTDQFESGIQTIAVIQAGHGLL 60

Query: 163 QLGATHKVVEDLSSVVCLRKKFNCI 177
           QLG+   + EDL  V+ +R+ F  I
Sbjct: 61  QLGSCKIIPEDLHFVLRMRQMFESI 85

[Close]

BLAST of Sed0012647.1 vs. TAIR 10
Match: AT2G31280.1 (conserved peptide upstream open reading frame 7 )

HSP 1 Score: 48.5 bits (114), Expect = 8.7e-06
Identity = 28/76 (36.84%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 102 LIGKVAADNSHKWIYKE--PNDQEINLLSSTWEAQFQSSIKTIALIAAR--GVVQLGATH 161
           ++G+VA    H+W++ E   N        + WE+Q  + IKTI ++A    GVVQLG+  
Sbjct: 74  IVGQVAVSGEHQWVFPENYNNCNSAFEFHNVWESQISAGIKTILVVAVGPCGVVQLGSLC 133

Query: 162 KVVEDLSSVVCLRKKF 174
           KV ED++ V  +R  F
Sbjct: 134 KVNEDVNFVNHIRHLF 149

The following BLAST results are available for this feature:

BLAST of Sed0012647.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159131.1	3.1e-61	55.08	protein RICE SALT SENSITIVE 3 isoform X1 [Momordica charantia]	[more]
XP_022159132.1	5.2e-61	54.93	protein RICE SALT SENSITIVE 3 isoform X2 [Momordica charantia]	[more]
XP_011021653.1	1.4e-58	54.64	PREDICTED: transcription factor EMB1444-like [Populus euphratica] >XP_011021654....	[more]
XP_002314734.1	1.9e-58	54.11	protein RICE SALT SENSITIVE 3 [Populus trichocarpa] >PNT15645.1 hypothetical pro...	[more]
OMO78151.1	7.0e-58	54.42	hypothetical protein CCACVL1_14613 [Corchorus capsularis]	[more]

BLAST of Sed0012647.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
K4PW38	1.4e-13	30.97	Protein RICE SALT SENSITIVE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RSS3 P...	[more]
Q58G01	1.2e-04	36.84	Transcription factor bHLH155 OS=Arabidopsis thaliana OX=3702 GN=BHLH155 PE=1 SV=...	[more]

BLAST of Sed0012647.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E2Z9	1.5e-61	55.08	protein RICE SALT SENSITIVE 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1DYZ3	2.5e-61	54.93	protein RICE SALT SENSITIVE 3 isoform X2 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6M2FAV5	5.3e-59	54.45	bHLH-MYC_N domain-containing protein OS=Populus davidiana OX=266767 PE=4 SV=1	[more]
B9HVC9	9.0e-59	54.11	bHLH-MYC_N domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_010...	[more]
A0A1R3I6L5	3.4e-58	54.42	bHLH-MYC_N domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL...	[more]

BLAST of Sed0012647.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60060.1	8.3e-57	48.44	Serine/threonine-protein kinase WNK (With No Lysine)-related	[more]
AT3G15240.2	7.1e-16	34.48	Serine/threonine-protein kinase WNK (With No Lysine)-related	[more]
AT5G53900.2	7.1e-16	35.37	Serine/threonine-protein kinase WNK (With No Lysine)-related	[more]
AT5G53900.1	9.0e-11	42.35	Serine/threonine-protein kinase WNK (With No Lysine)-related	[more]
AT2G31280.1	8.7e-06	36.84	conserved peptide upstream open reading frame 7	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025610	Transcription factor MYC/MYB N-terminal	PFAM	PF14215	bHLH-MYC_N	coord: 84..173 e-value: 3.8E-13 score: 50.1
None	No IPR available	PANTHER	PTHR46633	TRANSCRIPTION FACTOR MYC/MYB-RELATED	coord: 207..235 coord: 4..194
None	No IPR available	PANTHER	PTHR46633:SF3	SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-LIKE PROTEIN	coord: 207..235
None	No IPR available	PANTHER	PTHR46633:SF3	SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-LIKE PROTEIN	coord: 4..194

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0012647	Sed0012647	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0012647.1-exon	Sed0012647.1-exon-LG03:43282459..43282630	exon
Sed0012647.1-exon	Sed0012647.1-exon-LG03:43282667..43282806	exon
Sed0012647.1-exon	Sed0012647.1-exon-LG03:43282904..43282937	exon
Sed0012647.1-exon	Sed0012647.1-exon-LG03:43283032..43283115	exon
Sed0012647.1-exon	Sed0012647.1-exon-LG03:43283211..43283392	exon
Sed0012647.1-exon	Sed0012647.1-exon-LG03:43283734..43283774	exon
Sed0012647.1-exon	Sed0012647.1-exon-LG03:43283837..43283915	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0012647.1-cds	Sed0012647.1-cds-LG03:43282459..43282630	CDS
Sed0012647.1-cds	Sed0012647.1-cds-LG03:43282667..43282806	CDS
Sed0012647.1-cds	Sed0012647.1-cds-LG03:43282904..43282937	CDS
Sed0012647.1-cds	Sed0012647.1-cds-LG03:43283032..43283115	CDS
Sed0012647.1-cds	Sed0012647.1-cds-LG03:43283211..43283392	CDS
Sed0012647.1-cds	Sed0012647.1-cds-LG03:43283734..43283774	CDS
Sed0012647.1-cds	Sed0012647.1-cds-LG03:43283837..43283915	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0012647.1	Sed0012647.1-protein	polypeptide