Sed0012633.1 (mRNA) Chayote v1

Overview


Name	Sed0012633.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	CCHC-type domain-containing protein
Location	LG03: 4736047 .. 4738030 (-)
Sequence length	1984
RNA-Seq Expression	Sed0012633.1
Synteny	Sed0012633.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCCACCTTTATCGCAATCTCGCTTTTACGTTTTACTTTAACCCTCTTTTATATAATATCACTCTCTGCTACTTTAGACTAAAATTGGTATTAAAATAAATAAAAAGGAAGATAAGCACCTTCCTGCAAGAAAAGCATCTTCTCTAAAATCTGGCAATGGGCAAACAAACCATCTTTCCCCATTGGGAAAACCTGAAACTTACAGATGAAGAACAAGTGGCTATCCACTTGGATGCAGACCGGATAGCAGGAGCAGAAAAGGAGCTACAAAACGCCCTAGTTTGCAAAATCCTGACACCCAAACTGGCCAATGTGGAGAATTTCATATCATCCATCACAAAGCTTTGGAACATGGAGGAACAACTAAGCATCGTAAACGTGGGTTTCAACCTCTACTTATGCCTATTCAAAACCCTGAACCAAAAGCAAAGGGTTCTTGAAAATGGACCCTGGTGCTTTCACAGCAGCCTGCTGGTTTTCCAACAGCCACCAACAGGACATGGCAGGTTAGCAGATTTAGAGTTTCAGTATGCATCTTTCTGGCTTCATTTCCACCTTCCCTTGTGCTGCTTCTCTAGGAAAATGGCCATAGATTTTGGGAATGTGGTTGGGAGTTTTGAAGGTGTGGAAATGGAGGATGATGAAGGGATGTGTTGGGGGAGGAGTTTGAGAGTTAGAATAAGGATTGATGTGAACAAGCCTTTGAGAAGAGTGGTGAAGTCCAAAGTAGAGTCCATGGGGATTGAAACTTTTGTACCTATCACTTATGAAAAGCTTCCAGATTTCTGCTATGGATGTGGGAAACTTGGGCATGTTCTAAAAGACTGCGATCTTTATTGTGAAACTGCAGAGGAAGATTTGGAGTATGGAGACTGGCTCAGGGAAATGGATTCCAAAGGGAGTGATGACCAGAACCCCGAGTCGTCGGAATCAGCACCCGACGGTTGGGGGGGACCGGTCGCCGAGGAGAGGGAGGTGGCAGTGGAGGATAGGGCTGAAAATGGAAAGGAGAAAATAGAGGAAGAATCTGTAGCTGGAGTAATTTCAGGGGAAATTGAGGAAGAGGATGAGAACATAAAGGAATCTATGAGGACAGCTGGAGTATATGGGATCACAAAGGGAGATAATGGAGATGTGGTGGAATTGCATGAGGCAGTTCGGTGGGAGGACCTCGTAGAGAAGGGCTTGGAAGTCTCAGGTTCGAAACCTTCTTATCTCTCAGGTTCGGACCTTGTAATGGGCCCGAGTGCCTCTGTGGTGCCTAATTACCGATCATCAAAAGGCAAGAATAAAAAACAGCCGTTTAGGAAGATAAAGGCCCAGCAGTTAATTTGGGAGGAGGGTCCAGAGATGGGTTTGGACCAAATGGATGGTCTTACAACTTGGAGCTTCCAGAAGGGTTTCAATGGGTCAATTAAGAAAGGTTGAGTGGGGAAGCAGAGGAACTGGAAAAGAATGGAATCTATGATAGAAGATCAAAGTTCGCAGAAGAAGAAAGATAGGAAGAAGATCTCAAGTGTCTCTTTTGAAAAGAACAATCATCCCTTATGTTACTGTTTCCTAAATCATGTAATCTTTTATTTTCTTTTCCGTTTTCCTAAATGTTGCAACATGTCTGTGAAAGTTCTACTCGTACCAACTAGCTTTCTACCATGTTTGTCTTTGTTTTCTATGCATTATTGTAGTTCTGAGAACAAAAGAACGGTCAGTTCATTTTAGCCATGCATGTTTCTTTTCCCAAAAAGTAACTAATATTTTCTCCAACTGTACAGAGTTTCAAATATCTATTTTAACTATTTGATCAACAACCTTGGCTAGATGGAAATACAGCCCATCTACAAGTTCTTAATATTTGTTTCTTCAAGACAAATTTAATGAACTCACCTCGACTGCAAAGATATATTCCAGCTTCCTGCTGTCTATATCTAGCAAACTTCCCTTAGCCAAGCTTGTCCAACAATGAAGACATCGATCCCTTTTCGC

mRNA sequence

CCTCCACCTTTATCGCAATCTCGCTTTTACGTTTTACTTTAACCCTCTTTTATATAATATCACTCTCTGCTACTTTAGACTAAAATTGGTATTAAAATAAATAAAAAGGAAGATAAGCACCTTCCTGCAAGAAAAGCATCTTCTCTAAAATCTGGCAATGGGCAAACAAACCATCTTTCCCCATTGGGAAAACCTGAAACTTACAGATGAAGAACAAGTGGCTATCCACTTGGATGCAGACCGGATAGCAGGAGCAGAAAAGGAGCTACAAAACGCCCTAGTTTGCAAAATCCTGACACCCAAACTGGCCAATGTGGAGAATTTCATATCATCCATCACAAAGCTTTGGAACATGGAGGAACAACTAAGCATCGTAAACGTGGGTTTCAACCTCTACTTATGCCTATTCAAAACCCTGAACCAAAAGCAAAGGGTTCTTGAAAATGGACCCTGGTGCTTTCACAGCAGCCTGCTGGTTTTCCAACAGCCACCAACAGGACATGGCAGGTTAGCAGATTTAGAGTTTCAGTATGCATCTTTCTGGCTTCATTTCCACCTTCCCTTGTGCTGCTTCTCTAGGAAAATGGCCATAGATTTTGGGAATGTGGTTGGGAGTTTTGAAGGTGTGGAAATGGAGGATGATGAAGGGATGTGTTGGGGGAGGAGTTTGAGAGTTAGAATAAGGATTGATGTGAACAAGCCTTTGAGAAGAGTGGTGAAGTCCAAAGTAGAGTCCATGGGGATTGAAACTTTTGTACCTATCACTTATGAAAAGCTTCCAGATTTCTGCTATGGATGTGGGAAACTTGGGCATGTTCTAAAAGACTGCGATCTTTATTGTGAAACTGCAGAGGAAGATTTGGAGTATGGAGACTGGCTCAGGGAAATGGATTCCAAAGGGAGTGATGACCAGAACCCCGAGTCGTCGGAATCAGCACCCGACGGTTGGGGGGGACCGGTCGCCGAGGAGAGGGAGGTGGCAGTGGAGGATAGGGCTGAAAATGGAAAGGAGAAAATAGAGGAAGAATCTGTAGCTGGAGTAATTTCAGGGGAAATTGAGGAAGAGGATGAGAACATAAAGGAATCTATGAGGACAGCTGGAGTATATGGGATCACAAAGGGAGATAATGGAGATGTGGTGGAATTGCATGAGGCAGTTCGGTGGGAGGACCTCGTAGAGAAGGGCTTGGAAGTCTCAGGTTCGAAACCTTCTTATCTCTCAGGTTCGGACCTTGTAATGGGCCCGAGTGCCTCTGTGGTGCCTAATTACCGATCATCAAAAGGCAAGAATAAAAAACAGCCGTTTAGGAAGATAAAGGCCCAGCAGTTAATTTGGGAGGAGGGTCCAGAGATGGGTTTGGACCAAATGGATGGTCTTACAACTTGGAGCTTCCAGAAGGGTTTCAATGGGTCAATTAAGAAAGGTTGAGTGGGGAAGCAGAGGAACTGGAAAAGAATGGAATCTATGATAGAAGATCAAAGTTCGCAGAAGAAGAAAGATAGGAAGAAGATCTCAAGTGTCTCTTTTGAAAAGAACAATCATCCCTTATGTTACTGTTTCCTAAATCATGTAATCTTTTATTTTCTTTTCCGTTTTCCTAAATGTTGCAACATGTCTGTGAAAGTTCTACTCGTACCAACTAGCTTTCTACCATGTTTGTCTTTGTTTTCTATGCATTATTGTAGTTCTGAGAACAAAAGAACGGTCAGTTCATTTTAGCCATGCATGTTTCTTTTCCCAAAAAGTAACTAATATTTTCTCCAACTGTACAGAGTTTCAAATATCTATTTTAACTATTTGATCAACAACCTTGGCTAGATGGAAATACAGCCCATCTACAAGTTCTTAATATTTGTTTCTTCAAGACAAATTTAATGAACTCACCTCGACTGCAAAGATATATTCCAGCTTCCTGCTGTCTATATCTAGCAAACTTCCCTTAGCCAAGCTTGTCCAACAATGAAGACATCGATCCCTTTTCGC

Coding sequence (CDS)

ATGGGCAAACAAACCATCTTTCCCCATTGGGAAAACCTGAAACTTACAGATGAAGAACAAGTGGCTATCCACTTGGATGCAGACCGGATAGCAGGAGCAGAAAAGGAGCTACAAAACGCCCTAGTTTGCAAAATCCTGACACCCAAACTGGCCAATGTGGAGAATTTCATATCATCCATCACAAAGCTTTGGAACATGGAGGAACAACTAAGCATCGTAAACGTGGGTTTCAACCTCTACTTATGCCTATTCAAAACCCTGAACCAAAAGCAAAGGGTTCTTGAAAATGGACCCTGGTGCTTTCACAGCAGCCTGCTGGTTTTCCAACAGCCACCAACAGGACATGGCAGGTTAGCAGATTTAGAGTTTCAGTATGCATCTTTCTGGCTTCATTTCCACCTTCCCTTGTGCTGCTTCTCTAGGAAAATGGCCATAGATTTTGGGAATGTGGTTGGGAGTTTTGAAGGTGTGGAAATGGAGGATGATGAAGGGATGTGTTGGGGGAGGAGTTTGAGAGTTAGAATAAGGATTGATGTGAACAAGCCTTTGAGAAGAGTGGTGAAGTCCAAAGTAGAGTCCATGGGGATTGAAACTTTTGTACCTATCACTTATGAAAAGCTTCCAGATTTCTGCTATGGATGTGGGAAACTTGGGCATGTTCTAAAAGACTGCGATCTTTATTGTGAAACTGCAGAGGAAGATTTGGAGTATGGAGACTGGCTCAGGGAAATGGATTCCAAAGGGAGTGATGACCAGAACCCCGAGTCGTCGGAATCAGCACCCGACGGTTGGGGGGGACCGGTCGCCGAGGAGAGGGAGGTGGCAGTGGAGGATAGGGCTGAAAATGGAAAGGAGAAAATAGAGGAAGAATCTGTAGCTGGAGTAATTTCAGGGGAAATTGAGGAAGAGGATGAGAACATAAAGGAATCTATGAGGACAGCTGGAGTATATGGGATCACAAAGGGAGATAATGGAGATGTGGTGGAATTGCATGAGGCAGTTCGGTGGGAGGACCTCGTAGAGAAGGGCTTGGAAGTCTCAGGTTCGAAACCTTCTTATCTCTCAGGTTCGGACCTTGTAATGGGCCCGAGTGCCTCTGTGGTGCCTAATTACCGATCATCAAAAGGCAAGAATAAAAAACAGCCGTTTAGGAAGATAAAGGCCCAGCAGTTAATTTGGGAGGAGGGTCCAGAGATGGGTTTGGACCAAATGGATGGTCTTACAACTTGGAGCTTCCAGAAGGGTTTCAATGGGTCAATTAAGAAAGGTTGA

Protein sequence

MGKQTIFPHWENLKLTDEEQVAIHLDADRIAGAEKELQNALVCKILTPKLANVENFISSITKLWNMEEQLSIVNVGFNLYLCLFKTLNQKQRVLENGPWCFHSSLLVFQQPPTGHGRLADLEFQYASFWLHFHLPLCCFSRKMAIDFGNVVGSFEGVEMEDDEGMCWGRSLRVRIRIDVNKPLRRVVKSKVESMGIETFVPITYEKLPDFCYGCGKLGHVLKDCDLYCETAEEDLEYGDWLREMDSKGSDDQNPESSESAPDGWGGPVAEEREVAVEDRAENGKEKIEEESVAGVISGEIEEEDENIKESMRTAGVYGITKGDNGDVVELHEAVRWEDLVEKGLEVSGSKPSYLSGSDLVMGPSASVVPNYRSSKGKNKKQPFRKIKAQQLIWEEGPEMGLDQMDGLTTWSFQKGFNGSIKKG

Homology

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BLAST of Sed0012633.1 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 185.7 bits (470), Expect = 8.5e-43
Identity = 104/306 (33.99%), Postives = 168/306 (54.90%), Query Frame = 0


Query: 1   MGKQTIFPHWENLKLTDEE-QVAIHLDADRIAGAEKELQNALVCKILTPKLANVENFISS 60
           M  + +   W+  KLT EE ++A+ +D D +  AE+ L  +LV K+L  ++ + +     
Sbjct: 1   MDHENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRV 60

Query: 61  ITKLWNMEEQLSIVNVGFNLYLCLFKTLNQKQRVLENGPWCFHSSLLVFQQPPTGHGRLA 120
           +   W +E QL++ ++G NL+L  F       RV++ GPW F  +L+V Q+P +    ++
Sbjct: 61  LLLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSK-NIS 120

Query: 121 DLEFQYASFWLH-FHLPLCCFSRKMAIDFGNVVGSFEGVEMEDDEGMCWGRSLRVRIRID 180
           +LEF   +FW+H F LP+   ++ MAI  GN +G+F  V+  +++G  WG SLR+R+ ID
Sbjct: 121 ELEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVDC-NEKGFSWGASLRIRVLID 180

Query: 181 VNKPLRRVVKSKVESMGIETFVPITYEKLPDFCYGCGKLGHVLKDCDLYCETAEED---- 240
           + KPLRR +K  ++      ++PI YE+LPDFCY CG +GH   DCD     A++D    
Sbjct: 181 ITKPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRAT 240

Query: 241 LEYGDWLREMDSK-GSDDQNPESSESAPDGWGGPVAEEREVAVEDRAENGKEKIEEESVA 300
            EYG WLR + SK G+       S +  D  G      +E  VE+  +   E+  ++   
Sbjct: 241 SEYGPWLRFVGSKAGAQKGRKGKSPAREDSCGSSSMNSKERGVEETKQQLSEQTNQDGFQ 300

[Close]

BLAST of Sed0012633.1 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 182.2 bits (461), Expect = 9.4e-42
Identity = 91/255 (35.69%), Postives = 146/255 (57.25%), Query Frame = 0


Query: 1   MGKQTIFPHWENLKLTDEE-QVAIHLDADRIAGAEKELQNALVCKILTPKLANVENFISS 60
           M    +   W+N KLT EE ++A+ +D+  + G  K L+ +L+CK+L+ +  +     ++
Sbjct: 1   MAASNLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNT 60

Query: 61  ITKLWNME-EQLSIVNVGFNLYLCLFKTLNQKQRVLENGPWCFHSSLLVFQQPPTGHGRL 120
           +   W ++ +  S+  +GFN++L  F   + + R+L  GPW F  +L++    P    + 
Sbjct: 61  LKIAWKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDN-PVSLTKP 120

Query: 121 ADLEFQYASFWLH-FHLPLCCFSRKMAIDFGNVVGSFEGVEMEDDEGMCWGRSLRVRIRI 180
            D++F+  S W+H F L L C ++ MA   GN +G FE VE  +    CWG  LRVR+R 
Sbjct: 121 LDMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVE-SNANNFCWGSCLRVRVRF 180

Query: 181 DVNKPLRRVVKSKVESMGIETFVPITYEKLPDFCYGCGKLGHVLKDCDLYC-ETAEEDLE 240
           DV KPL R +K  ++      ++PI YE+LPDF Y CG+L H+LKDC   C ++  ++L+
Sbjct: 181 DVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDCSDCCVDSVSKNLQ 240

Query: 241 YGDWLREMDSKGSDD 252
           YG WLR    K S +
Sbjct: 241 YGPWLRFQGHKNSSN 253

[Close]

BLAST of Sed0012633.1 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 171.0 bits (432), Expect = 2.2e-38
Identity = 88/236 (37.29%), Postives = 135/236 (57.20%), Query Frame = 0


Query: 10  WENLKLTDEEQVAIHLDADRIAGAEKELQNALVCKILTPKLANVENFISSITKLWNMEEQ 69
           WE+ K T++E   + +D  +       ++  +V K+ T K  + E   S +  +W +   
Sbjct: 8   WEHFKSTNDENETVTIDRGKPILTADNVKLCVVAKLHTSKRISAEAIRSVMKSVWRVHNS 67

Query: 70  LSIVNVGFNLYLCLFKTLNQKQRVLENGPWCFHSSLLVFQQPPTGHGRLADLEFQYASFW 129
                +G N+Y+ LFK+L++K RVL +GPW F+ SLLV    PT   +  D+ F + +FW
Sbjct: 68  TRFEPLGMNIYVILFKSLSEKSRVLSSGPWTFNKSLLVLTS-PTATNQPLDMNFNFCAFW 127

Query: 130 LHFH-LPLCCFSRKMAIDFGNVVGSFEGVEMEDDEGMCWGRSLRVRIRIDVNKPLRRVVK 189
           +  H +P  C S +MA   G  +G  E +E +  +G   G  +RVR++IDV+KPLRR +K
Sbjct: 128 IQIHNIPFECISTEMANILGAKLGDVEEIEGDGADGWA-GPFIRVRVKIDVSKPLRRGIK 187

Query: 190 SKVESMGIETFVPITYEKLPDFCYGCGKLGHVLKDCDLYCE--TAEEDLEYGDWLR 243
            K  S G + + P+ YEKLPDFCY CGK+GH  ++C+   +  T     +YGDWLR
Sbjct: 188 LK-NSDGKDIWCPLRYEKLPDFCYECGKIGHSGRECEQRSKVVTTNSPEQYGDWLR 240

[Close]

BLAST of Sed0012633.1 vs. NCBI nr
Match: VVA32948.1 (PREDICTED: DUF4283 domain-containing [Prunus dulcis])

HSP 1 Score: 165.2 bits (417), Expect = 1.2e-36
Identity = 109/320 (34.06%), Postives = 173/320 (54.06%), Query Frame = 0


Query: 11  ENLKLTDEEQVAIHLDADRIAGAEKELQNALVCKILTPKLANVENFISSITKLWNMEEQL 70
           + L LT++E+ AI +  + I    + L+ +LV K+LT    N E F  ++ K+W+   ++
Sbjct: 10  KTLILTEDERDAIQVRQNDIDDVGERLKMSLVGKVLTTTAFNREAFKQTMLKIWSTVREV 69

Query: 71  SIVNVGFNLYLCLFKTLNQKQRVLENGPWCFHSSLLVFQQPPTGHGRLADLEFQYASFWL 130
            + ++G NL+L +F T   + RVL +GPW F  + LV  + P G    + +  +YA FW+
Sbjct: 70  VVKDIGENLFLFIFATEGDRLRVLRSGPWNFDKA-LVLLETPDGSIAPSKMLLKYADFWI 129

Query: 131 HFH-LPLCCFSRKMAIDFGNVVGSFEGVEMEDDEGMCWGRSLRVRIRIDVNKPLRRVVKS 190
             H +PL C S  +    GN  G    V +E  +G C GR LR+R+ +DV+KPLRR  K 
Sbjct: 130 QVHNVPLSCMSTNLGRQIGNSFGRCLDV-IEGMDGKCLGRFLRLRVSVDVSKPLRRGKKM 189

Query: 191 KVESMGIETFVPITYEKLPDFCYGCGKLGHVLKDCDLYCETAE--EDLEYGDWLR-EMDS 250
            + S G   FV   YE+LP+FC+ CG+LGHV K+C    + A+  ++  YG WL+   D 
Sbjct: 190 TLPS-GNTVFVEFRYERLPEFCFCCGRLGHVFKECSFVDQAAKQADEKPYGSWLKATKDF 249

Query: 251 KGSDDQNPESSESAPDGWGGPVAEEREVAVEDRAENGK-EKIEEESVAGVISGEIEEEDE 310
                 NP+ +  +     G  A+E+E+ VE +  N   EK+ E S+  +    + E  +
Sbjct: 250 HSIRAGNPKRTNGSGSEAEGDGAKEKEMEVEGQQSNSSGEKVAESSLGLLSKQRVGERRQ 309

Query: 311 NIKESMRTAGVYGITKGDNG 326
             +E+ R A V G+   +NG
Sbjct: 310 PPREADREA-VAGVGPANNG 325

[Close]

BLAST of Sed0012633.1 vs. NCBI nr
Match: TXG53056.1 (hypothetical protein EZV62_022225 [Acer yangbiense])

HSP 1 Score: 161.4 bits (407), Expect = 1.7e-35
Identity = 86/270 (31.85%), Postives = 147/270 (54.44%), Query Frame = 0


Query: 1   MGKQTIFPHWENLKLTDEEQVAIHLDADRIAGAEKELQNALVCKILTPKLANVENFISSI 60
           M  Q I    E+L L ++     H++ D      K++ + LV K+LT +  N E FI  I
Sbjct: 1   MDAQEIVRLCESLSLVEDVGAIRHVEEDHQMEGLKDVSHVLVGKVLTGRKVNREAFIGLI 60

Query: 61  TKLWNMEEQLSIVNVGFNLYLCLFKTLNQKQRVLENGPWCFHSSLLVFQQPPTGHGRLAD 120
            +LW+   ++   +VG N+++  F+    + R+ + GPW F +SL+  ++P    G ++ 
Sbjct: 61  EQLWSPIGRVDTESVGENIFMFYFENTEDRNRIWQRGPWHFDNSLITLEKPDR-LGDISM 120

Query: 121 LEFQYASFWLHFH-LPLCCFSRKMAIDFGNVVGSFEGVEMEDDEGMCWGRSLRVRIRIDV 180
           L+F  A FW+  H +P+ C +R MA    N +   E +E+  D   CWG+ LRV++RID+
Sbjct: 121 LKFNQADFWVQIHNIPIMCMNRSMARWLANQLE--EVLELPSDSKECWGKFLRVKVRIDI 180

Query: 181 NKPLRRVVKSKVESMGIETFVPITYEKLPDFCYGCGKLGHVLKDC---DLYCETAEEDL- 240
           ++PL R ++ ++++ G    V + YE+LP+FCY CGK+GH L+DC   +      E  + 
Sbjct: 181 SRPLERWLRLRLDNSGKVVVVVLKYERLPEFCYACGKIGHALRDCHDDEARMNAMEGSIA 240

Query: 241 EYGDWLREMDSKGSDDQNPESSESAPDGWG 266
            +G W+R      +  +N +S +    G G
Sbjct: 241 SFGAWMRATAPDRTKTRNSQSEKGESSGEG 267

[Close]

BLAST of Sed0012633.1 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 4.1e-43
Identity = 104/306 (33.99%), Postives = 168/306 (54.90%), Query Frame = 0


Query: 1   MGKQTIFPHWENLKLTDEE-QVAIHLDADRIAGAEKELQNALVCKILTPKLANVENFISS 60
           M  + +   W+  KLT EE ++A+ +D D +  AE+ L  +LV K+L  ++ + +     
Sbjct: 1   MDHENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRV 60

Query: 61  ITKLWNMEEQLSIVNVGFNLYLCLFKTLNQKQRVLENGPWCFHSSLLVFQQPPTGHGRLA 120
           +   W +E QL++ ++G NL+L  F       RV++ GPW F  +L+V Q+P +    ++
Sbjct: 61  LLLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSK-NIS 120

Query: 121 DLEFQYASFWLH-FHLPLCCFSRKMAIDFGNVVGSFEGVEMEDDEGMCWGRSLRVRIRID 180
           +LEF   +FW+H F LP+   ++ MAI  GN +G+F  V+  +++G  WG SLR+R+ ID
Sbjct: 121 ELEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVDC-NEKGFSWGASLRIRVLID 180

Query: 181 VNKPLRRVVKSKVESMGIETFVPITYEKLPDFCYGCGKLGHVLKDCDLYCETAEED---- 240
           + KPLRR +K  ++      ++PI YE+LPDFCY CG +GH   DCD     A++D    
Sbjct: 181 ITKPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRAT 240

Query: 241 LEYGDWLREMDSK-GSDDQNPESSESAPDGWGGPVAEEREVAVEDRAENGKEKIEEESVA 300
            EYG WLR + SK G+       S +  D  G      +E  VE+  +   E+  ++   
Sbjct: 241 SEYGPWLRFVGSKAGAQKGRKGKSPAREDSCGSSSMNSKERGVEETKQQLSEQTNQDGFQ 300

[Close]

BLAST of Sed0012633.1 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.6e-42
Identity = 91/255 (35.69%), Postives = 146/255 (57.25%), Query Frame = 0


Query: 1   MGKQTIFPHWENLKLTDEE-QVAIHLDADRIAGAEKELQNALVCKILTPKLANVENFISS 60
           M    +   W+N KLT EE ++A+ +D+  + G  K L+ +L+CK+L+ +  +     ++
Sbjct: 1   MAASNLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNT 60

Query: 61  ITKLWNME-EQLSIVNVGFNLYLCLFKTLNQKQRVLENGPWCFHSSLLVFQQPPTGHGRL 120
           +   W ++ +  S+  +GFN++L  F   + + R+L  GPW F  +L++    P    + 
Sbjct: 61  LKIAWKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDN-PVSLTKP 120

Query: 121 ADLEFQYASFWLH-FHLPLCCFSRKMAIDFGNVVGSFEGVEMEDDEGMCWGRSLRVRIRI 180
            D++F+  S W+H F L L C ++ MA   GN +G FE VE  +    CWG  LRVR+R 
Sbjct: 121 LDMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVE-SNANNFCWGSCLRVRVRF 180

Query: 181 DVNKPLRRVVKSKVESMGIETFVPITYEKLPDFCYGCGKLGHVLKDCDLYC-ETAEEDLE 240
           DV KPL R +K  ++      ++PI YE+LPDF Y CG+L H+LKDC   C ++  ++L+
Sbjct: 181 DVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDCSDCCVDSVSKNLQ 240

Query: 241 YGDWLREMDSKGSDD 252
           YG WLR    K S +
Sbjct: 241 YGPWLRFQGHKNSSN 253

[Close]

BLAST of Sed0012633.1 vs. ExPASy TrEMBL
Match: A0A6J1D765 (uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017902 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-38
Identity = 88/236 (37.29%), Postives = 135/236 (57.20%), Query Frame = 0


Query: 10  WENLKLTDEEQVAIHLDADRIAGAEKELQNALVCKILTPKLANVENFISSITKLWNMEEQ 69
           WE+ K T++E   + +D  +       ++  +V K+ T K  + E   S +  +W +   
Sbjct: 8   WEHFKSTNDENETVTIDRGKPILTADNVKLCVVAKLHTSKRISAEAIRSVMKSVWRVHNS 67

Query: 70  LSIVNVGFNLYLCLFKTLNQKQRVLENGPWCFHSSLLVFQQPPTGHGRLADLEFQYASFW 129
                +G N+Y+ LFK+L++K RVL +GPW F+ SLLV    PT   +  D+ F + +FW
Sbjct: 68  TRFEPLGMNIYVILFKSLSEKSRVLSSGPWTFNKSLLVLTS-PTATNQPLDMNFNFCAFW 127

Query: 130 LHFH-LPLCCFSRKMAIDFGNVVGSFEGVEMEDDEGMCWGRSLRVRIRIDVNKPLRRVVK 189
           +  H +P  C S +MA   G  +G  E +E +  +G   G  +RVR++IDV+KPLRR +K
Sbjct: 128 IQIHNIPFECISTEMANILGAKLGDVEEIEGDGADGWA-GPFIRVRVKIDVSKPLRRGIK 187

Query: 190 SKVESMGIETFVPITYEKLPDFCYGCGKLGHVLKDCDLYCE--TAEEDLEYGDWLR 243
            K  S G + + P+ YEKLPDFCY CGK+GH  ++C+   +  T     +YGDWLR
Sbjct: 188 LK-NSDGKDIWCPLRYEKLPDFCYECGKIGHSGRECEQRSKVVTTNSPEQYGDWLR 240

[Close]

BLAST of Sed0012633.1 vs. ExPASy TrEMBL
Match: A0A5E4G034 (PREDICTED: DUF4283 domain-containing OS=Prunus dulcis OX=3755 GN=ALMOND_2B021569 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 5.8e-37
Identity = 109/320 (34.06%), Postives = 173/320 (54.06%), Query Frame = 0


Query: 11  ENLKLTDEEQVAIHLDADRIAGAEKELQNALVCKILTPKLANVENFISSITKLWNMEEQL 70
           + L LT++E+ AI +  + I    + L+ +LV K+LT    N E F  ++ K+W+   ++
Sbjct: 10  KTLILTEDERDAIQVRQNDIDDVGERLKMSLVGKVLTTTAFNREAFKQTMLKIWSTVREV 69

Query: 71  SIVNVGFNLYLCLFKTLNQKQRVLENGPWCFHSSLLVFQQPPTGHGRLADLEFQYASFWL 130
            + ++G NL+L +F T   + RVL +GPW F  + LV  + P G    + +  +YA FW+
Sbjct: 70  VVKDIGENLFLFIFATEGDRLRVLRSGPWNFDKA-LVLLETPDGSIAPSKMLLKYADFWI 129

Query: 131 HFH-LPLCCFSRKMAIDFGNVVGSFEGVEMEDDEGMCWGRSLRVRIRIDVNKPLRRVVKS 190
             H +PL C S  +    GN  G    V +E  +G C GR LR+R+ +DV+KPLRR  K 
Sbjct: 130 QVHNVPLSCMSTNLGRQIGNSFGRCLDV-IEGMDGKCLGRFLRLRVSVDVSKPLRRGKKM 189

Query: 191 KVESMGIETFVPITYEKLPDFCYGCGKLGHVLKDCDLYCETAE--EDLEYGDWLR-EMDS 250
            + S G   FV   YE+LP+FC+ CG+LGHV K+C    + A+  ++  YG WL+   D 
Sbjct: 190 TLPS-GNTVFVEFRYERLPEFCFCCGRLGHVFKECSFVDQAAKQADEKPYGSWLKATKDF 249

Query: 251 KGSDDQNPESSESAPDGWGGPVAEEREVAVEDRAENGK-EKIEEESVAGVISGEIEEEDE 310
                 NP+ +  +     G  A+E+E+ VE +  N   EK+ E S+  +    + E  +
Sbjct: 250 HSIRAGNPKRTNGSGSEAEGDGAKEKEMEVEGQQSNSSGEKVAESSLGLLSKQRVGERRQ 309

Query: 311 NIKESMRTAGVYGITKGDNG 326
             +E+ R A V G+   +NG
Sbjct: 310 PPREADREA-VAGVGPANNG 325

[Close]

BLAST of Sed0012633.1 vs. ExPASy TrEMBL
Match: A0A5C7HA35 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_022225 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.3e-36
Identity = 86/270 (31.85%), Postives = 147/270 (54.44%), Query Frame = 0


Query: 1   MGKQTIFPHWENLKLTDEEQVAIHLDADRIAGAEKELQNALVCKILTPKLANVENFISSI 60
           M  Q I    E+L L ++     H++ D      K++ + LV K+LT +  N E FI  I
Sbjct: 1   MDAQEIVRLCESLSLVEDVGAIRHVEEDHQMEGLKDVSHVLVGKVLTGRKVNREAFIGLI 60

Query: 61  TKLWNMEEQLSIVNVGFNLYLCLFKTLNQKQRVLENGPWCFHSSLLVFQQPPTGHGRLAD 120
            +LW+   ++   +VG N+++  F+    + R+ + GPW F +SL+  ++P    G ++ 
Sbjct: 61  EQLWSPIGRVDTESVGENIFMFYFENTEDRNRIWQRGPWHFDNSLITLEKPDR-LGDISM 120

Query: 121 LEFQYASFWLHFH-LPLCCFSRKMAIDFGNVVGSFEGVEMEDDEGMCWGRSLRVRIRIDV 180
           L+F  A FW+  H +P+ C +R MA    N +   E +E+  D   CWG+ LRV++RID+
Sbjct: 121 LKFNQADFWVQIHNIPIMCMNRSMARWLANQLE--EVLELPSDSKECWGKFLRVKVRIDI 180

Query: 181 NKPLRRVVKSKVESMGIETFVPITYEKLPDFCYGCGKLGHVLKDC---DLYCETAEEDL- 240
           ++PL R ++ ++++ G    V + YE+LP+FCY CGK+GH L+DC   +      E  + 
Sbjct: 181 SRPLERWLRLRLDNSGKVVVVVLKYERLPEFCYACGKIGHALRDCHDDEARMNAMEGSIA 240

Query: 241 EYGDWLREMDSKGSDDQNPESSESAPDGWG 266
            +G W+R      +  +N +S +    G G
Sbjct: 241 SFGAWMRATAPDRTKTRNSQSEKGESSGEG 267

[Close]

BLAST of Sed0012633.1 vs. TAIR 10
Match: AT3G42140.1 (zinc ion binding;nucleic acid binding )

HSP 1 Score: 49.7 bits (117), Expect = 6.8e-06
Identity = 57/261 (21.84%), Postives = 104/261 (39.85%), Query Frame = 0


Query: 32  GAEKELQNALV--C--KILTPKLANVENFISSITKLWNMEEQLSIVNVGFNLYLCLFKTL 91
           G ++E  N L+  C   +  P LA+++N         N++E++    +  +    LF++ 
Sbjct: 15  GVQEEAINLLIELCDEALRKPNLASLQNRCPK-----NVDEEVVGRILEIHKIEFLFQSE 74

Query: 92  NQKQRVLENGPWCFHSSLLVFQQPPTGHGRLADLEFQYASFWLHFH-LPLCCFSRKMAID 151
                +L  GPW F+  + V Q+    H   +D EF+   FW+    +PL   + ++   
Sbjct: 75  ESMFSILRRGPWSFNDWMCVIQRWTKLH---SDAEFKRIPFWIQIRGIPLRFLTARIITS 134

Query: 152 FGNVVGSFEGVEMEDDEGMCWGRSLRVRIRIDVNKPLRRVVKSKVESMGIETFVPITYEK 211
            G  +G F    +        GR + V                          +   YEK
Sbjct: 135 IGERMGLFLETNL--------GRDVSV--------------------------LKFQYEK 194

Query: 212 LPDFCYGCGKLGHVLKDCDLYCETAEEDLEYGDWLREMDSKGSDDQNPESSESAPDGWGG 271
           L +FC  CG L H   +    C T+     + D   + D   +++ +P+     PD   G
Sbjct: 195 LKNFCTTCGMLSHDASE----CPTSGNQGPHADDDDDDDDNDANEDHPDVPGDNPDQVHG 229

Query: 272 PVAEER-EVAVEDRAENGKEK 287
           P+ ++  E + ED  +N  ++
Sbjct: 255 PMNQQHPEESTEDEHQNAPKR 229

The following BLAST results are available for this feature:

BLAST of Sed0012633.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156185.1	8.5e-43	33.99	uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha...	[more]
XP_022132681.1	9.4e-42	35.69	uncharacterized protein LOC111005481 [Momordica charantia]	[more]
XP_022149484.1	2.2e-38	37.29	uncharacterized protein LOC111017902 [Momordica charantia]	[more]
VVA32948.1	1.2e-36	34.06	PREDICTED: DUF4283 domain-containing [Prunus dulcis]	[more]
TXG53056.1	1.7e-35	31.85	hypothetical protein EZV62_022225 [Acer yangbiense]	[more]

BLAST of Sed0012633.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0012633.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU55	4.1e-43	33.99	uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1BSZ1	4.6e-42	35.69	uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1D765	1.1e-38	37.29	uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A5E4G034	5.8e-37	34.06	PREDICTED: DUF4283 domain-containing OS=Prunus dulcis OX=3755 GN=ALMOND_2B021569...	[more]
A0A5C7HA35	8.3e-36	31.85	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_02222...	[more]

BLAST of Sed0012633.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G42140.1	6.8e-06	21.84	zinc ion binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 32..174 e-value: 4.4E-13 score: 49.0
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 177..225 e-value: 2.1E-10 score: 40.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 243..268
None	No IPR available	PANTHER	PTHR31286:SF84	SUBFAMILY NOT NAMED	coord: 12..245
IPR040256	Uncharacterized protein At4g02000-like	PANTHER	PTHR31286	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE	coord: 12..245
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 211..224 score: 9.916444

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0012633	Sed0012633	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0012633.1-exon	Sed0012633.1-exon-LG03:4736047..4738030	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0012633.1-three_prime_utr	Sed0012633.1-three_prime_utr-LG03:4736047..4736601	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0012633.1-cds	Sed0012633.1-cds-LG03:4736602..4737873	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0012633.1-five_prime_utr	Sed0012633.1-five_prime_utr-LG03:4737874..4738030	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0012633.1	Sed0012633.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding